RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8912
(538 letters)
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase,
protein phosphatase, hydrolase, magne metal-binding;
1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Length = 187
Score = 141 bits (357), Expect = 1e-39
Identities = 76/147 (51%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Query: 5 SNSLDPSVKKFPKMVVFDLDYTLWPLHVHDLV-APFKKIGQ-KVMDAKGTLIKYYRGVPE 62
N S+ + PK+ VFDLDYTLWP V V PF K V D +G ++ Y VPE
Sbjct: 16 ENLYFQSMARLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPE 75
Query: 63 ILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGI 122
+L+ L+ AAASRTSEI A Q+L L +L +YF ++EIYPG K THFE L++ TGI
Sbjct: 76 VLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGI 135
Query: 123 EYKDMVFFDDEERNSHDVSPLGVTCIH 149
+ M+FFDDE RN DVS LGVTCIH
Sbjct: 136 PFSQMIFFDDERRNIVDVSKLGVTCIH 162
Score = 125 bits (314), Expect = 2e-33
Identities = 59/136 (43%), Positives = 87/136 (63%)
Query: 402 LGVIGIQVHRDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF 461
+ + V D G ++ Y +VP +LK L+ AAASRT+E+ A+QL++LF
Sbjct: 47 VDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELF 106
Query: 462 NWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 521
+ ++F H+EI+PG K THF L++ TGI + M+FFDDE RN DVS LGVTCIH+++G
Sbjct: 107 DLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNG 166
Query: 522 MSHSVLHKGLKQWASK 537
M+ L +GL+ +A
Sbjct: 167 MNLQTLSQGLETFAKA 182
Score = 100 bits (249), Expect = 1e-24
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 297 KHLKKDRVEDAKGTLLNLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDF 356
V D +G + LY ++PE++K L+ + A ASRT I A LL L L +
Sbjct: 52 HKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRY 111
Query: 357 FDYKEIFPAEKKIKHFANLKKDSKIKYKDMVFFDDEERNARSISKLGVIGIQV 409
F ++EI+P KI HF L++ + I + M+FFDDE RN +SKLGV I +
Sbjct: 112 FVHREIYP-GSKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHI 163
Score = 58.9 bits (142), Expect = 2e-10
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 232 VLDSNGMVIKYYQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDHKEIY 291
V D G ++ Y +VP +L+ L+ + AA S T I +LE+ + RYF H+EIY
Sbjct: 59 VRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIY 118
Query: 292 PRQKTKHLKK 301
P K H ++
Sbjct: 119 PGSKITHFER 128
Score = 45.0 bits (106), Expect = 1e-05
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 171 IYFDDEQEHVNDISKLGVTATRKDSKIKYKDMVFFDDEERNARSISKLGVIGIQVMHSMT 230
IY + H + ++ + I + M+FFDDE RN +SKLGV I + + M
Sbjct: 117 IYPGSKITHFERL--------QQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMN 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.7 bits (183), Expect = 4e-14
Identities = 98/566 (17%), Positives = 160/566 (28%), Gaps = 196/566 (34%)
Query: 21 FDLDYTLWPLH---VHDLVAPFKKIGQKVMDAKGTLIK-YYRGVPEILRYLKENK--CLV 74
F+ Y L +H L A + + LIK Y R + L
Sbjct: 91 FENCY----LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 75 AAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVFFDDEE 134
A + L A I+ GQ T +Y F +E
Sbjct: 147 RAVGEGNAQLVA-----------------IFGGQGNTD----------DY----F--EEL 173
Query: 135 RNSHDVSPLGVTCIHSWLMMSSGRLKEATGIDYKDMIYFDDEQEHVNDISK-LGVTATRK 193
R+ + + + S+ L E F +I + L +
Sbjct: 174 RDLYQTYH---VLVGDLIKFSAETLSELIRTTLDAEKVF----TQGLNILEWLENPSNTP 226
Query: 194 DSKIKYKDMVFFDDEERNARSISKLGVIGI-QVMHSMTNVLDSNGMVIKYYQDVPRILEY 252
D Y + IS +IG+ Q+ H Y ++L +
Sbjct: 227 DK--DYLLSI----------PIS-CPLIGVIQLAH---------------YVVTAKLLGF 258
Query: 253 ----LREH---------NILVAAV---STTVRILH--VQNILEM---IGVARYFDHKEIY 291
LR + ++ A + + V+ + + IGV Y E Y
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY----EAY 314
Query: 292 PRQK-TKHLKKDRVEDAKGT---LLNLYRDIP--EIVKYLKDHNIKLALASRTVHI--RN 343
P + +D +E+ +G +L++ ++ ++ Y+ N L A + V I N
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNKTNSHLP-AGKQVEISLVN 372
Query: 344 AY----------SLLHL-LGLSDFFDYKEIFPAEKKIKHFANLKKD-SKIKYKDMVFFDD 391
SL L L L +K K A D S+I +
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTL-------------RKAK--APSGLDQSRIPF-------- 409
Query: 392 EERNARSISKLGVIGIQVHRDKVLDAGGAIIKYYRD-VPAILKYLKQNNCLVAAAS---- 446
ER + ++ + H I K L +NN A
Sbjct: 410 SERKLKFSNRFLPVASPFHSH-----------LLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 447 ----RTTEMLR------AHQLVDLF-----NW--NQHFD--HKEIF-PGQKT-----THF 481
LR + ++VD W F H F PG + TH
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH- 517
Query: 482 ANLKKATGIEYKDMVFFDDEERNSHD 507
K TG+ ++ + N D
Sbjct: 518 -RNKDGTGVR---VIVAGTLDINPDD 539
Score = 42.0 bits (98), Expect = 6e-04
Identities = 46/321 (14%), Positives = 90/321 (28%), Gaps = 127/321 (39%)
Query: 79 RTSEILHAKQILNLIN---LNQY-FSNKEI---YPGQKTTHFESLK-KATGIEYKDMVF- 129
+TS+ A+ + N + + Y FS +I P T HF K K Y M+F
Sbjct: 1637 KTSKA--AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 130 -FDDEERNSHDVSPLGVTCIHSWLMMSSGRLKEATGIDYKDMIYFDDEQEHVNDISKLGV 188
D + + + KE + ++ L
Sbjct: 1695 TIVDGKLKTEKI------------------FKEIN-EHSTSYTFRSEK-------GLLSA 1728
Query: 189 T--------ATRKDSKIKYKDMVFFDDEERNARSISKLGVIGIQVMHSMTNVLDSNGMVI 240
T K ++D+ + + G HS L G
Sbjct: 1729 TQFTQPALTLM---EKAAFEDL-----KSKGLIPADAT-FAG----HS----L---G--- 1765
Query: 241 KYYQDVPRILEYLREHNILVAA-----VSTTVRILH-----VQNILE----------MIG 280
EY L + + + V ++ +Q + MI
Sbjct: 1766 ----------EY----AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 281 VARYFDHKEIYPRQKTKHLKK--DRVEDAKGTLL-----NL----Y------RDIP---E 320
+ + + + L+ +RV G L+ N+ Y R +
Sbjct: 1812 I----NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 321 IVKYLKDHNIKLALASRTVHI 341
++ ++K I + +++ +
Sbjct: 1868 VLNFIKLQKIDIIELQKSLSL 1888
Score = 32.3 bits (73), Expect = 0.51
Identities = 44/256 (17%), Positives = 72/256 (28%), Gaps = 94/256 (36%)
Query: 333 ALASRTVHIRNA---YSLL-------HLLGLSDFF-------------DYKEIFPAE--- 366
A ++R + + + + LL L + F D + PAE
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 367 KKIKHFANLKKDSKIKYKDMV---FFDDEERNARSISKLGVIGIQVH---------RDKV 414
K + + ++L + SK+ D V + E L G +H D
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY-----LE--GNDIHALAAKLLQENDTT 115
Query: 415 LDAGGAIIK-YYRDVPAILKYLKQ--NNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKE 471
L +IK Y + + N+ L A L A
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA----------------- 158
Query: 472 IFPGQKTTH--FANLKK--ATGIEYKDMV--FFD-------DEERNSHDVSPLGVTCIHV 518
IF GQ T F L+ T Y +V + R + D
Sbjct: 159 IFGGQGNTDDYFEELRDLYQT---YHVLVGDLIKFSAETLSELIRTTLDAEK------VF 209
Query: 519 KDGMSHSVLHKGLKQW 534
G++ + +W
Sbjct: 210 TQGLN-------ILEW 218
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 2e-08
Identities = 82/568 (14%), Positives = 157/568 (27%), Gaps = 144/568 (25%)
Query: 1 MSPQSNSLDPSVKK----FPKMVVFDLDYTLWPLHVHDLVAP-FKK------IGQK---- 45
M ++ K F V + D V D+ K I K
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCK----DVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 46 -------VMDAKGTLIKYYRGVPEILR----YLKENKCLVAAASRTSEILHAKQILNLIN 94
+ +K + + V E+LR +L ++ +Q L N
Sbjct: 63 GTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 95 LNQYFSNKEIYPGQK----TTHFESLKKATGIEYKDM-----------VFFDDEERNSHD 139
NQ F+ + Q L+ A + + V +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV---QC 178
Query: 140 VSPLGVTCIHSWLMMSSGRLKEATGI-DYKDMIYFDDEQEHVNDISKLGVTATRKDSKIK 198
+ WL + + + + + + + R S
Sbjct: 179 KMDFKI----FWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 199 YKDMVFFDDEERNARSISKLGVIGIQVMHSMTNVLDSNGMVIKYYQDVP-RILEYLREHN 257
+ N L V + NV ++ + ++ +IL R
Sbjct: 233 ELRRLLKSKPYENC-----LLV--------LLNVQNAK--AWNAF-NLSCKILLTTRFKQ 276
Query: 258 I---LVAAVSTTVRILHVQNIL---EMIGV-ARYFDHKEIYPRQKTKHLKKDRVEDAKGT 310
+ L AA +T + + H L E+ + +Y D + + E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----------QDLPREVLTTN 326
Query: 311 LLNL------YRDIPEIVKYLKDHNI-KLALASRTVHIRNAYSLLHLLGLSDFFDYKEIF 363
L RD K N KL I ++ ++L FD +F
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-----IESSLNVLEPAEYRKMFDRLSVF 381
Query: 364 PAEKKIKHFANLKKDSKIKYK--DMVFFDDEERNARSISKLGVIGIQVHRDKVLDAGGAI 421
P + I +++FD + + + ++H+ +++
Sbjct: 382 P------------PSAHIPTILLSLIWFDVIKSDVMVVVN------KLHKYSLVEKQPKE 423
Query: 422 IKYYRDVPAI-LKYLKQNNCLVAAASRTTEMLRAHQ-LVDLFNWNQHFDHKEIFPGQKTT 479
+P+I L+ + H+ +VD +N + FD ++ P
Sbjct: 424 STIS--IPSIYLELKVKLE----------NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 480 HFAN-----LKKATGIEYKDM---VFFD 499
+F + LK E + VF D
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Score = 48.7 bits (115), Expect = 4e-06
Identities = 60/407 (14%), Positives = 124/407 (30%), Gaps = 107/407 (26%)
Query: 29 PLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGV--PEILRYLKENKCLVAAASRTSEILHA 86
L +H + A +++ + L+ V + C + +R
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKAWNAF-NLSCKILLTTRF------ 274
Query: 87 KQILNLINLNQYFSNKEIYPGQKTTHFESLK---KATGIEYKDMVFFDDEERNSHDVSPL 143
KQ+ + ++ + T E K D R +P
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR------PQDLPREVLTTNPR 328
Query: 144 GVTCIHSWLMMSSGRLKEATGIDYKDMIYFDDEQEHVNDIS--KLGVTATRKDSKIKYKD 201
++ I + G AT ++K D+ + + S L RK +
Sbjct: 329 RLSII--AESIRDGL---ATWDNWKH--VNCDKLTTIIESSLNVLEPAEYRK----MFDR 377
Query: 202 MVFFDDEERNARSISKLGVIGI-------QVMHSMTNVLDSNGMVIKYYQD----VPRIL 250
+ F I ++ + + + N L +V K ++ +P I
Sbjct: 378 LSVFPPSAH----IP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 251 EYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDHKEIYPRQKTK--------HLKK- 301
L+ A LH ++I++ + + FD ++ P + HLK
Sbjct: 433 LELKVKLENEYA-------LH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 302 ---DRVE------------DAK-----------GTLLNLYRDIPEIVKYLKDHN------ 329
+R+ + K G++LN + + Y+ D++
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 330 ----IKLALASRTVHIRNAYS-LLHLLGLSDFFDYKEIF-PAEKKIK 370
+ I + Y+ LL + L + + IF A K+++
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLR-IAL--MAEDEAIFEEAHKQVQ 588
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural
genomics, PSI-2, protei structure initiative; 1.71A
{Bacteroides fragilis} PDB: 3slr_A
Length = 387
Score = 52.2 bits (124), Expect = 2e-07
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
Query: 14 KFPKMVVFDLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCL 73
KF K ++ DLD T+W V D ++G + K + E ++ LK +
Sbjct: 220 KFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGK-----AFTEFQEWVKKLKNRGII 274
Query: 74 VAAASRTSE---ILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVFF 130
+A S+ +E ++ ++ + K + ++++ I + MVF
Sbjct: 275 IAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWENKADNIRTIQRTLNIGFDSMVFL 334
Query: 131 DDE--ERNSHDVSPLGVTCIH 149
DD ERN GVT
Sbjct: 335 DDNPFERNMVREHVPGVTVPE 355
Score = 43.0 bits (100), Expect = 2e-04
Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 21/214 (9%)
Query: 320 EIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDYKEIFPA---------EKKIK 370
+ L + ++ A I N + G + FD
Sbjct: 149 YQLTKLNYELMNISQAYPNFFICNLAGISAKYGRNFMFDSSVYVNTEIILSLDALPIISS 208
Query: 371 HFANLKKDSKIKYKDMVFFD-DEERNARSISKLGVIGIQVHRDKVLDAGGAIIKYYRDVP 429
++ + K+K + D D + G IQV + K + +
Sbjct: 209 RTIDIIAAIQGKFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIG------KAFTEFQ 262
Query: 430 AILKYLKQNNCLVAAASRTTE---MLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKK 486
+K LK ++A S+ E + ++ K + +++
Sbjct: 263 EWVKKLKNRGIIIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWENKADNIRTIQR 322
Query: 487 ATGIEYKDMVFFDDE--ERNSHDVSPLGVTCIHV 518
I + MVF DD ERN GVT +
Sbjct: 323 TLNIGFDSMVFLDDNPFERNMVREHVPGVTVPEL 356
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics,
protein structure initiative, NEW research center for
structural genomics; 3.00A {Bacillus subtilis}
Length = 233
Score = 45.8 bits (109), Expect = 1e-05
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 272 VQNILEMIGVARYFDHKEIYPRQKTKHLKKDRVED--AKGTLLNLYRDIPEIVKYLKDHN 329
+++IL G + + E Q+ H K + +K T +L I ++ LK+ N
Sbjct: 52 LESILIFGGAETKYTNAEK---QELMHRKNRDYQMLISKLTPEDLLPGIGRLLCQLKNEN 108
Query: 330 IKLALASRTVHIRNAYSLLHLLGLSDFFDY 359
IK+ LAS + RNA +L L + D F
Sbjct: 109 IKIGLASSS---RNAPKILRRLAIIDDFHA 135
Score = 36.5 bits (85), Expect = 0.014
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 246 VPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
+ R+L L+ NI + S++ IL + + F
Sbjct: 97 IGRLLCQLKNENIKIGLASSSRNA---PKILRRLAIIDDFHA 135
Score = 33.8 bits (78), Expect = 0.081
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 21 FDLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAAASRT 80
+ +L+ K +++ +K T G+ +L LK + AS +
Sbjct: 59 GGAETKYTNAEKQELMH-RKNRDYQMLISKLTPEDLLPGIGRLLCQLKNENIKIGLASSS 117
Query: 81 SEILHAKQILNLINLNQYFS 100
+A +IL + + F
Sbjct: 118 R---NAPKILRRLAIIDDFH 134
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure,
structural genomics, NPPSFA; HET: MSE GOL; 1.73A
{Thermotoga maritima MSB8} PDB: 3kbb_A*
Length = 216
Score = 45.7 bits (109), Expect = 1e-05
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 291 YPRQKTKHLKKDRVEDAKGTLLNLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHL 350
+ K + + LL + E ++++K IKLALA+ T R A L
Sbjct: 62 DSLENFKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLALATST-PQREALERLRR 120
Query: 351 LGLSDFFDY 359
L L +FD
Sbjct: 121 LDLEKYFDV 129
Score = 38.3 bits (90), Expect = 0.003
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 246 VPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
V LE+++ I +A ++T + L + + +YFD
Sbjct: 89 VREALEFVKSKRIKLALATSTPQRE-ALERLRRLDLEKYFDV 129
Score = 34.5 bits (80), Expect = 0.047
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 59 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 100
GV E L ++K + +A A+ ++ A + L ++L +YF
Sbjct: 88 GVREALEFVKSKRIKLALAT-STPQREALERLRRLDLEKYFD 128
Score = 27.9 bits (63), Expect = 6.4
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 428 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 469
V L+++K +A A+ +T A + + + ++FD
Sbjct: 89 VREALEFVKSKRIKLALAT-STPQREALERLRRLDLEKYFDV 129
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis}
PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A*
1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 45.3 bits (108), Expect = 2e-05
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 272 VQNILEMIGVARYFDHKEIYPRQKTKHLKKDRVEDAKGTLLNLYRDIPEIVKYLKDHNIK 331
+Q IL++ + + ++K + K ++D ++Y I +++K L+ + IK
Sbjct: 53 LQKILDLADKKVSAEEFKELAKRKNDNYVK-MIQDVSP--ADVYPGILQLLKDLRSNKIK 109
Query: 332 LALASRTVHIRNAYSLLHLLGLSDFFDY 359
+ALAS + +N LL + L+ +FD
Sbjct: 110 IALASAS---KNGPFLLERMNLTGYFDA 134
Score = 37.2 bits (87), Expect = 0.007
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 240 IKYYQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
Y + ++L+ LR + I +A S + +LE + + YFD
Sbjct: 90 ADVYPGILQLLKDLRSNKIKIALASASKNGPF---LLERMNLTGYFDA 134
Score = 33.7 bits (78), Expect = 0.083
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 49 AKGTLIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 100
+ Y G+ ++L+ L+ NK +A AS + + +L +NL YF
Sbjct: 85 QDVSPADVYPGILQLLKDLRSNKIKIALASASK---NGPFLLERMNLTGYFD 133
Score = 28.7 bits (65), Expect = 3.7
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 422 IKYYRDVPAILKYLKQNNCLVAAAS---RTTEMLRAHQLVDLF 461
Y + +LK L+ N +A AS +L L F
Sbjct: 90 ADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGYF 132
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative
phosphoglucomutase, enzyme function initiative
structural genomics, isomerase; 1.70A {Escherichia coli}
Length = 243
Score = 44.2 bits (105), Expect = 5e-05
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 272 VQNILEMIGVARYFDHKEIYPRQKTKHLKKDRVED--AKGTLLNLYRDIPEIVKYLKDHN 329
++ IL+ G F+ +E + + K + T+ + I ++ L+
Sbjct: 55 LRRILQHGGKEGDFNSQER---AQLAYRKNLLYVHSLRELTVNAVLPGIRSLLADLRAQQ 111
Query: 330 IKLALASRTVHIRNAYSLLHLLGLSDFFDY 359
I + LAS + NA ++L L L +FF +
Sbjct: 112 ISVGLASVS---LNAPTILAALELREFFTF 138
Score = 36.9 bits (86), Expect = 0.010
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 246 VPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
+ +L LR I V S ++ IL + + +F
Sbjct: 100 IRSLLADLRAQQISVGLASVSLNA---PTILAALELREFFTF 138
Score = 33.8 bits (78), Expect = 0.11
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 59 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 100
G+ +L L+ + V AS + +A IL + L ++F+
Sbjct: 99 GIRSLLADLRAQQISVGLASVSL---NAPTILAALELREFFT 137
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.86A {Streptococcus thermophilus lmg 18311}
Length = 214
Score = 42.6 bits (101), Expect = 1e-04
Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 293 RQKTKHLKKDRVEDAKGTLLNLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLG 352
+++ K++ K + D+ +++ +K +++ LAS + + + L
Sbjct: 72 QEEYNTYKQNNPLPYKELIFP---DVLKVLNEVKSQGLEIGLASSS-VKADIFRALEENR 127
Query: 353 LSDFFDY 359
L FFD
Sbjct: 128 LQGFFDI 134
Score = 37.9 bits (89), Expect = 0.004
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 246 VPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
V ++L ++ + + S++V+ + LE + +FD
Sbjct: 94 VLKVLNEVKSQGLEIGLASSSVKA-DIFRALEENRLQGFFDI 134
Score = 34.1 bits (79), Expect = 0.061
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 59 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 100
V ++L +K + AS +S + L L +F
Sbjct: 93 DVLKVLNEVKSQGLEIGLAS-SSVKADIFRALEENRLQGFFD 133
Score = 28.3 bits (64), Expect = 5.6
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 428 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 469
V +L +K + AS ++ + ++ FD
Sbjct: 94 VLKVLNEVKSQGLEIGLAS-SSVKADIFRALEENRLQGFFDI 134
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein
S initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Length = 226
Score = 42.2 bits (100), Expect = 2e-04
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 275 ILEMIG-----VARYFDHKEIYP---RQKTKHLKKDRVEDAKGTLLNLYRDIPEIVKYLK 326
+ + +G V + ++ + RQ+ R L + E V K
Sbjct: 48 LPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVALCK 107
Query: 327 DHNIKLALASRTVHIRNAYSLLHLLGLSDFFD 358
+ + + LAS + +L + L D FD
Sbjct: 108 EQGLLVGLASASPL-HMLEKVLTMFDLRDSFD 138
Score = 39.1 bits (92), Expect = 0.002
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 246 VPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
V + +E +LV S + + ++ +L M + FD
Sbjct: 99 VREAVALCKEQGLLVGLASASPLHM-LEKVLTMFDLRDSFDA 139
Score = 33.0 bits (76), Expect = 0.18
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 59 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 100
GV E + KE LV AS S + +++L + +L F
Sbjct: 98 GVREAVALCKEQGLLVGLAS-ASPLHMLEKVLTMFDLRDSFD 138
Score = 27.6 bits (62), Expect = 8.0
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 428 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 469
V + K+ LV AS + + +++ +F+ FD
Sbjct: 99 VREAVALCKEQGLLVGLAS-ASPLHMLEKVLTMFDLRDSFDA 139
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A
3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A
3quc_A 3qub_A 3qu4_A
Length = 243
Score = 41.1 bits (97), Expect = 4e-04
Identities = 10/93 (10%), Positives = 26/93 (27%), Gaps = 9/93 (9%)
Query: 275 ILEMIGVARYFDHKEIYPRQKTKHLKKDRVEDAKGTLLNLYRDIPEI---------VKYL 325
G ++ R+ K ++ +E L+ PE ++ +
Sbjct: 62 AYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKV 121
Query: 326 KDHNIKLALASRTVHIRNAYSLLHLLGLSDFFD 358
K + + + + + L H +
Sbjct: 122 KSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE 154
Score = 35.0 bits (81), Expect = 0.045
Identities = 2/42 (4%), Positives = 16/42 (38%)
Query: 246 VPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
+L+ ++ + V+ + ++ ++ + + +
Sbjct: 114 AWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKEL 155
Score = 28.4 bits (64), Expect = 5.3
Identities = 4/42 (9%), Positives = 16/42 (38%)
Query: 59 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 100
G E+L+ +K + + ++ +++ + +
Sbjct: 113 GAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE 154
Score = 27.6 bits (62), Expect = 9.8
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 428 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 469
+L+ +K + + ++ +L F H +
Sbjct: 114 AWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKEL 155
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 39.7 bits (93), Expect = 5e-04
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 8/117 (6%)
Query: 301 KDRVEDAKGTLLNLYRDIP---EIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFF 357
+ + D G L D ++ K + + + S A + L +
Sbjct: 3 RGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAA-PIRELETNGVV 61
Query: 358 DYKEIFPAEKKIK----HFANLKKDSKIKYKDMVFFDDEERNARSISKLGVIGIQVH 410
D + K F + +D V DD N R + G++G+
Sbjct: 62 DKVLLSGELGVEKPEEAAFQAAADAIDLPMRDCVLVDDSILNVRGAVEAGLVGVYYQ 118
Score = 34.3 bits (79), Expect = 0.028
Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 10/122 (8%)
Query: 406 GIQVHRDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 465
G++ + R +L K+N S L A + N
Sbjct: 1 GMRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPI-RELETNG 59
Query: 466 HFDHKEIFPGQKTTH-------FANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHV 518
D + + F A + +D V DD N G+ ++
Sbjct: 60 VVDK--VLLSGELGVEKPEEAAFQAAADAIDLPMRDCVLVDDSILNVRGAVEAGLVGVYY 117
Query: 519 KD 520
+
Sbjct: 118 QQ 119
Score = 29.7 bits (67), Expect = 0.98
Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 22/106 (20%)
Query: 57 YRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS-------------NKE 103
R +L K+N S + + N +
Sbjct: 20 QRRWRNLLAAAKKNGVGTVILSNDPG-GLGAAPIRELETNGVVDKVLLSGELGVEKPEEA 78
Query: 104 IYPGQKTTHFESLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIH 149
+ ++ A + +D V DD N G+ ++
Sbjct: 79 AF--------QAAADAIDLPMRDCVLVDDSILNVRGAVEAGLVGVY 116
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomic protein structure initiative, midwest center for
structural genomics, MCSG; HET: G1P; 2.00A {Escherichia
coli} SCOP: c.108.1.2
Length = 206
Score = 40.0 bits (94), Expect = 7e-04
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 8/111 (7%)
Query: 311 LLNLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDYKEIFP--AEKK 368
+ L ++ I+ L++ ++ + S T + + + D D+ I+
Sbjct: 89 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADH--IYLSQDLGM 146
Query: 369 IKH----FANLKKDSKIKYKDMVFFDDEERNARSISKLGVIGIQVHRDKVL 415
K + ++ + D VFFDD N ++LG+ I V +
Sbjct: 147 RKPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKDKTTI 197
Score = 35.4 bits (82), Expect = 0.025
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 28/133 (21%)
Query: 405 IGIQVHRDKVLDAGGAIIKYYR-DVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNW 463
+ + + ++ A+ R +V AI+ L++ V S T + +
Sbjct: 72 MALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEI 131
Query: 464 NQHFDH-------------KEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSP 510
DH I + ++ +A G D VFFDD N +
Sbjct: 132 RDAADHIYLSQDLGMRKPEARI--------YQHVLQAEGFSPSDTVFFDDNADN---IEG 180
Query: 511 ---LGVTCIHVKD 520
LG+T I VKD
Sbjct: 181 ANQLGITSILVKD 193
Score = 30.0 bits (68), Expect = 1.6
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 236 NGMVIKYYQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
+ + +V I+ LRE V +S T R+ E + DH
Sbjct: 86 QAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADH 137
Score = 29.6 bits (67), Expect = 1.9
Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 21/97 (21%)
Query: 53 LIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS------------ 100
+ V I+ L+E V S T+ + +
Sbjct: 89 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRK 148
Query: 101 -NKEIYPGQKTTHFESLKKATGIEYKDMVFFDDEERN 136
IY + + +A G D VFFDD N
Sbjct: 149 PEARIY--------QHVLQAEGFSPSDTVFFDDNADN 177
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain-
containing protein 1A; HDHD1A, haloacid
dehalogenase-like hydrolase domain containing 1A; 2.00A
{Homo sapiens}
Length = 250
Score = 39.3 bits (92), Expect = 0.002
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 318 IPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFD 358
+++ +L+ H I ALA+ + F
Sbjct: 117 AEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFS 157
Score = 32.3 bits (74), Expect = 0.30
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 246 VPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
+++ +LR+H I A +++ F H
Sbjct: 117 AEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSH 158
Score = 30.4 bits (69), Expect = 1.4
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 59 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 100
G +++ +L+++ A A+ + + FS
Sbjct: 116 GAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFS 157
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde
hydrolase like P structural genomics, PSI-2, protein
structure initiative; 2.30A {Oleispira antarctica}
Length = 277
Score = 39.1 bits (91), Expect = 0.002
Identities = 11/99 (11%), Positives = 26/99 (26%), Gaps = 9/99 (9%)
Query: 268 RILHVQNILEMIGVARYFDHKEIYPRQKTKHLKKDRVEDAKGTLLNLYRD-------IPE 320
+ H++ +L +A + I + + K + + E
Sbjct: 61 KSEHIRRMLGNSRIANAW--LSIKGQASNEEDIKRLYDLFAPIQTRIVAQRSQLIPGWKE 118
Query: 321 IVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDY 359
+ L IK+ + A +L+
Sbjct: 119 VFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYTPAS 157
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 38.0 bits (89), Expect = 0.003
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 314 LYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDY 359
L E++ LK++NI +A+ S S +H L+ +FD
Sbjct: 104 LNDGAIELLDTLKENNITMAIVSNKNG-ERLRSEIHHKNLTHYFDS 148
Score = 36.1 bits (84), Expect = 0.015
Identities = 25/137 (18%), Positives = 39/137 (28%), Gaps = 40/137 (29%)
Query: 3 PQSNSLDPSVKKFPKMVVFDLDYTL---WP-LHVHDLVAPFKKIGQKVMD---------- 48
++ + P K P V+FD TL + ++G K +D
Sbjct: 12 LEAQTQGPGSMKQPTAVIFDWYNTLIDTSINIDRTTFYQVLDQMGYKNIDLDSIPNSTIP 71
Query: 49 -------------------------AKGTLIKYYRGVPEILRYLKENKCLVAAASRTSEI 83
K G E+L LKEN +A S +
Sbjct: 72 KYLITLLGKRWKEATILYENSLEKSQKSDNFMLNDGAIELLDTLKENNITMAIVSNKNGE 131
Query: 84 LHAKQILNLINLNQYFS 100
+ ++ NL YF
Sbjct: 132 R-LRSEIHHKNLTHYFD 147
Score = 32.7 bits (75), Expect = 0.19
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 240 IKYYQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFD 286
+L+ L+E+NI +A VS +++ + + YFD
Sbjct: 102 FMLNDGAIELLDTLKENNITMAIVSNKNGER-LRSEIHHKNLTHYFD 147
Score = 28.4 bits (64), Expect = 5.1
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 422 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFD 468
+L LK+NN +A S + N +FD
Sbjct: 102 FMLNDGAIELLDTLKENNITMAIVSNKNGER-LRSEIHHKNLTHYFD 147
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI-
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides
vulgatus}
Length = 247
Score = 38.1 bits (89), Expect = 0.004
Identities = 7/93 (7%), Positives = 23/93 (24%), Gaps = 9/93 (9%)
Query: 275 ILEMIGVARYFDHKEIYPRQKTKHLKKDRVEDAKGTLLNLYRDIP---------EIVKYL 325
G + R++ ++ ++ + P E++ +
Sbjct: 61 AYMHEGRTGASTINIVSRRERGHDATEEEIKAIYQAKTEEFNKCPKAERMPGALEVLTKI 120
Query: 326 KDHNIKLALASRTVHIRNAYSLLHLLGLSDFFD 358
K + + + + L H +
Sbjct: 121 KSEGLTPMVVTGSGQTSLLDRLNHNFPGIFQAN 153
Score = 35.0 bits (81), Expect = 0.037
Identities = 2/42 (4%), Positives = 12/42 (28%)
Query: 246 VPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
+L ++ + V+ + + + + +
Sbjct: 113 ALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNHNFPGIFQANL 154
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 38.0 bits (89), Expect = 0.005
Identities = 11/87 (12%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 272 VQNILEMIGVARYFDHKEIYPRQKTKHLKKDRVEDAKGTLLNLYRDIPEIVKYLKDHNIK 331
++++ G++ + E + + ++ + + + E+++ L N+K
Sbjct: 56 LKSLSRETGMSITDEQAERLSEKHAQAYERLQHQ------IIALPGAVELLETLDKENLK 109
Query: 332 LALASRTVHIRNAYSLLHLLGLSDFFD 358
+A+ A L L L
Sbjct: 110 WCIATSGGI-DTATINLKALKLDINKI 135
Score = 32.6 bits (75), Expect = 0.21
Identities = 5/42 (11%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 246 VPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
+LE L + N+ ++ L+ + + +
Sbjct: 96 AVELLETLDKENLKWCIATSGGIDT-ATINLKALKLDINKIN 136
Score = 28.0 bits (63), Expect = 7.1
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 59 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 100
G E+L L + A+ + I A L + L+
Sbjct: 95 GAVELLETLDKENLKWCIAT-SGGIDTATINLKALKLDINKI 135
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic;
probable 2-haloalkanoic acid dehalogenase, hydrolase,
structural genomics; 2.40A {Sulfolobus tokodaii}
Length = 220
Score = 37.4 bits (87), Expect = 0.005
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 243 YQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
Y D LE L+ + +A VS V+ +LE + +YFD
Sbjct: 97 YDDTLEFLEGLKSNGYKLALVSNASP--RVKTLLEKFDLKKYFDA 139
Score = 34.3 bits (79), Expect = 0.055
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 314 LYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDY 359
LY D E ++ LK + KLAL S +LL L +FD
Sbjct: 96 LYDDTLEFLEGLKSNGYKLALVSNAS--PRVKTLLEKFDLKKYFDA 139
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3,
haloacid dehalogenase-like hydrolase domain containin
structural genomics; 1.55A {Homo sapiens}
Length = 263
Score = 37.1 bits (86), Expect = 0.009
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 243 YQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
L R + +A +S R ++ IL +G+ +FD
Sbjct: 108 LDGAEDTLRECRTRGLRLAVISNFDR--RLEGILGGLGLREHFDF 150
Score = 33.2 bits (76), Expect = 0.17
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 281 VARYFDHKEIYPRQKTKHLKKDRVED-AKGTLLNLYRDIPEIVKYLKDHNIKLALASRTV 339
V + F + Q + + +D + + + ++ + ++LA+ S
Sbjct: 73 VLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDGAEDTLRECRTRGLRLAVIS--- 129
Query: 340 HIRNAYS----LLHLLGLSDFFDY 359
N +L LGL + FD+
Sbjct: 130 ---NFDRRLEGILGGLGLREHFDF 150
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 36.7 bits (86), Expect = 0.010
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 28/111 (25%)
Query: 309 GTLLNLYRDIP----EIVKYLKDHNIKLALAS-RTVHIRNAYSLLHLLGLSDFF------ 357
G L + R I E ++ + + ++L S I Y+L LG++
Sbjct: 14 GNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGN--VIPVVYALKIFLGINGPVFGENGG 71
Query: 358 -------DYKEIFPAEKKIKHFANLKK--------DSKIKYKDMVFFDDEE 393
K+ F E K + K ++ + F D E
Sbjct: 72 IMFDNDGSIKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPE 122
>3ib6_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.20A {Listeria
monocytogenes}
Length = 189
Score = 36.3 bits (84), Expect = 0.012
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 312 LNLYRDIPEIVKYLKDHNIKLALAS--RTVHIRNAYSLLHLLGLSDFFDYKEIFPAEKKI 369
+ L ++ E ++ +K K A+ S T +L G+ D+FD+ I+ + ++
Sbjct: 33 VVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDF--IYASNSEL 90
Query: 370 KHFANLKKDSKI 381
+ K D I
Sbjct: 91 QPGKMEKPDKTI 102
Score = 34.0 bits (78), Expect = 0.071
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 243 YQDVPRILEYLREHNILVAAVS--TTVRILHVQNILEMIGVARYFDH 287
++ LE +++ A +S T ++ +L G+ YFD
Sbjct: 36 RKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDF 82
Score = 28.6 bits (64), Expect = 3.4
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 17/76 (22%)
Query: 39 FKKIGQKVMDAKGTLIKYYR-----------GVPEILRYLKENKCLVAAAS----RTSEI 83
+G+ + T ++ E L +K+ A S +E+
Sbjct: 7 IWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEV 66
Query: 84 LHAKQILNLINLNQYF 99
+ L + YF
Sbjct: 67 IKRV--LTNFGIIDYF 80
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.10A {Streptococcus pneumoniae}
SCOP: c.108.1.6
Length = 207
Score = 35.6 bits (83), Expect = 0.020
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 314 LYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDY 359
L E++ + + I+ + + NA+++L LG+ +F
Sbjct: 86 LMPGAREVLAWADESGIQQFIYTHK--GNNAFTILKDLGVESYFTE 129
Score = 35.6 bits (83), Expect = 0.024
Identities = 17/126 (13%), Positives = 33/126 (26%), Gaps = 44/126 (34%)
Query: 17 KMVVFDLDYTL-------------------WPLHVHDLVAPFKKIGQKVM--------DA 49
++DLD TL P + K + + +
Sbjct: 5 TAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNL 64
Query: 50 KGTLIKYYR---------------GVPEILRYLKENKCLVAAASRTSEILHAKQILNLIN 94
++ R G E+L + E+ + +A IL +
Sbjct: 65 DVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGN--NAFTILKDLG 122
Query: 95 LNQYFS 100
+ YF+
Sbjct: 123 VESYFT 128
Score = 27.5 bits (62), Expect = 9.1
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 243 YQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFD 286
+L + E I + + IL+ +GV YF
Sbjct: 87 MPGAREVLAWADESGIQQFIYTHKGN--NAFTILKDLGVESYFT 128
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 35.9 bits (82), Expect = 0.025
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 310 TLLNLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDYKEIFPAE 366
+L ++ ++ LK +L +A+ + LGL +F+ I A
Sbjct: 212 IILRPVDEVKVLLNDLKGAGFELGIATGRPY-TETVVPFENLGLLPYFEADFIATAS 267
Score = 32.1 bits (72), Expect = 0.44
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 1/74 (1%)
Query: 52 TLIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTT 111
+++ V +L LK + A+ + L YF I
Sbjct: 212 IILRPVDEVKVLLNDLKGAGFELGIATGRPYT-ETVVPFENLGLLPYFEADFIATASDVL 270
Query: 112 HFESLKKATGIEYK 125
E++ K
Sbjct: 271 EAENMYPQARPLGK 284
Score = 31.7 bits (71), Expect = 0.58
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 239 VIKYYQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDHKEI 290
+++ +V +L L+ + + E +G+ YF+ I
Sbjct: 213 ILRPVDEVKVLLNDLKGAGFELGIATGRPYT-ETVVPFENLGLLPYFEADFI 263
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A*
3r09_A*
Length = 205
Score = 34.5 bits (80), Expect = 0.042
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 314 LYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFD 358
E+V+ L +L + +R A+ L +GL+D F
Sbjct: 71 PAPGAVELVRELAGRGYRLGILTRNAR-ELAHVTLEAIGLADCFA 114
Score = 32.2 bits (74), Expect = 0.28
Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 30/112 (26%)
Query: 16 PKMVVFDLDYTLWPLH-VHDLVAPFKKIGQKVMD---------------AKGTLIKYYR- 58
K VFD+D TL VHD A + + D AK + +
Sbjct: 6 IKHWVFDMDGTL--TIAVHDFAAIREALSIPAEDDILTHLAALPADESAAKHAWLLEHER 63
Query: 59 ----------GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 100
G E++R L + +R + L A L I L F+
Sbjct: 64 DLAQGSRPAPGAVELVRELAGRGYRLGILTRNAREL-AHVTLEAIGLADCFA 114
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 34.5 bits (80), Expect = 0.050
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 314 LYRDIPEIVKYLKDHNIKLALAS--RTVHIRNAYSLLHLLGLSDFFDY 359
+Y ++ EI++ L + L +A+ TV +L + +F Y
Sbjct: 111 IYENMKEILEMLYKNGKILLVATSKPTVFAET---ILRYFDIDRYFKY 155
Score = 33.4 bits (77), Expect = 0.15
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 57 YRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 100
Y + EIL L +N ++ A+ + A+ IL ++++YF
Sbjct: 112 YENMKEILEMLYKNGKILLVATSKPTVF-AETILRYFDIDRYFK 154
Score = 29.1 bits (66), Expect = 3.3
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 243 YQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFD 286
Y+++ ILE L ++ ++ ++ + + IL + RYF
Sbjct: 112 YENMKEILEMLYKNGKILLVATSKPTVF-AETILRYFDIDRYFK 154
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin,
four-helix bundle, structural GENO NPPSFA; 2.20A
{Pyrococcus horikoshii}
Length = 235
Score = 34.4 bits (79), Expect = 0.067
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 243 YQDVPRILEYLREHNILVAAVS--TTVRILHVQNILEMIGVARYFDH 287
+ L++++E + A + + + +LE G+ + D
Sbjct: 101 LEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEFIDK 147
Score = 32.9 bits (75), Expect = 0.18
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 314 LYRDIPEIVKYLKDHNIKLALASRTVHIRNAY--SLLHLLGLSDFFDY 359
+ E ++++K+ +K A+ + +Y LL GL +F D
Sbjct: 100 VLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEFIDK 147
Score = 27.9 bits (62), Expect = 7.9
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 17 KMVVFDLDYTLWPLHVHDLVAPFKKIGQKVMDAKG 51
K+V FD+ TL DL + ++ G
Sbjct: 5 KLVTFDVWNTLL-----DLNIMLDEFSHQLAKISG 34
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
haloacid dehalogenase-like F PSI, protein structure
initiative; 1.40A {Streptococcus pneumoniae} SCOP:
c.108.1.3
Length = 190
Score = 34.1 bits (79), Expect = 0.069
Identities = 16/122 (13%), Positives = 31/122 (25%), Gaps = 41/122 (33%)
Query: 17 KMVVFDLDYTL-------------------WPLHVHDLVAPFKKIG-----QKVMDAKGT 52
++DL TL HD V K+ +
Sbjct: 7 HDYIWDLGGTLLDNYETSTAAFVETLALYGITQD-HDSVYQALKVSTPFAIETFAPNLEN 65
Query: 53 LIKYYR--------------GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQY 98
++ Y+ GV ++L + + +IL ++ Y
Sbjct: 66 FLEKYKENEARELEHPILFEGVSDLLEDISNQGGRHFLV--SHRNDQVLEILEKTSIAAY 123
Query: 99 FS 100
F+
Sbjct: 124 FT 125
Score = 32.9 bits (76), Expect = 0.13
Identities = 6/49 (12%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 314 LYRDIPEIVKYLKDHNIKLALAS----RTVHIRNAYSLLHLLGLSDFFD 358
L+ + ++++ + + + L S + + I L ++ +F
Sbjct: 83 LFEGVSDLLEDISNQGGRHFLVSHRNDQVLEI------LEKTSIAAYFT 125
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 34.1 bits (79), Expect = 0.069
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 314 LYRDIPEIVKYLKDHNIKLALAS--RTVHIRNAYSLLHLLGLSDFFDY 359
+Y I ++ LKD+ L +A+ TV + +L L+ +FD
Sbjct: 87 VYDGIEALLSSLKDYGFHLVVATSKPTVFSKQ---ILEHFKLAFYFDA 131
Score = 31.4 bits (72), Expect = 0.49
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 57 YRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 100
Y G+ +L LK+ + A+ + +KQIL L YF
Sbjct: 88 YDGIEALLSSLKDYGFHLVVATSKPTVF-SKQILEHFKLAFYFD 130
Score = 28.7 bits (65), Expect = 4.1
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 243 YQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFD 286
Y + +L L+++ + ++ + + ILE +A YFD
Sbjct: 88 YDGIEALLSSLKDYGFHLVVATSKPTVF-SKQILEHFKLAFYFD 130
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Bacteroides
fragilis nctc 9343}
Length = 225
Score = 34.1 bits (79), Expect = 0.081
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 314 LYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDY 359
L+ D + +LK I++ + S S L D+FD
Sbjct: 90 LFPDTLPTLTHLKKQGIRIGIISTKYR-FRILSFLRNHMPDDWFDI 134
Score = 31.4 bits (72), Expect = 0.58
Identities = 16/131 (12%), Positives = 30/131 (22%), Gaps = 49/131 (37%)
Query: 16 PKMVVFDLDYTL-------------------WPLHVHDLVAPFKKIGQ------------ 44
+ +FD DYTL + D++ IG+
Sbjct: 6 YTVYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITDDMIKRT--IGKTLEESFSILTGI 63
Query: 45 ----KVMDAKGTLIKYYR-----------GVPEILRYLKENKCLVAAASRTSEILHAKQI 89
++ + K L +LK+ + S
Sbjct: 64 TDADQLESFRQEYSKEADIYMNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFR-ILSF 122
Query: 90 LNLINLNQYFS 100
L + +F
Sbjct: 123 LRNHMPDDWFD 133
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of
haloacid dehalogenase-LI superfamily; HET: MSE PG4;
1.66A {Deinococcus radiodurans R1}
Length = 200
Score = 33.9 bits (78), Expect = 0.082
Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 11/132 (8%)
Query: 286 DHKEIYPRQKTKHLKKDRVEDAKGTLLNLYRDIPEIVKYLKD--HNIKLALASRTVHIRN 343
E + + ED + + + PE++ +D ++ + N
Sbjct: 56 TLAEYLEQVVFYQPRDFTPEDFRAVMEEQSQPRPEVLALARDLGQRYRMYSLNNEGRDLN 115
Query: 344 AYSLLHLLGLSDFFDYKEIFP--AEKKIKH----FANLKKDSKIKYKDMVFFDDEERNAR 397
Y + GL +F F A +K + ++++ ++ V DD +N +
Sbjct: 116 EY-RIRTFGLGEFLLA--FFTSSALGVMKPNPAMYRLGLTLAQVRPEEAVMVDDRLQNVQ 172
Query: 398 SISKLGVIGIQV 409
+ +G+ +Q
Sbjct: 173 AARAVGMHAVQC 184
Score = 28.9 bits (65), Expect = 3.5
Identities = 15/131 (11%), Positives = 37/131 (28%), Gaps = 29/131 (22%)
Query: 406 GIQVHRDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 465
+ + +V A+ + L Q + + + L +++ F +
Sbjct: 69 PRDFTPEDFRAVMEEQSQPRPEVLALARDLGQ-RYRMYSLNNEGRDLNEYRI-RTFGLGE 126
Query: 466 HFD-------------HKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSP-- 510
+ ++ L A + ++ V DD +N V
Sbjct: 127 FLLAFFTSSALGVMKPNPAMY------RLG-LTLA-QVRPEEAVMVDDRLQN---VQAAR 175
Query: 511 -LGVTCIHVKD 520
+G+ + D
Sbjct: 176 AVGMHAVQCVD 186
>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily,
phosphonotase, metal binding; 2.30A {Bacillus cereus}
SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A
2iof_K* 1rdf_A 1fez_A
Length = 267
Score = 33.7 bits (77), Expect = 0.12
Identities = 11/95 (11%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 271 HVQNILEMIGVARYFDHKEIYPR-------QKTKHLKKDRVEDAKGTLLNLYRDIPEIVK 323
HV+ + EM +A + ++ + Q+ ++ + + + E++
Sbjct: 56 HVRALTEMPRIASEW--NRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINGVKEVIA 113
Query: 324 YLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFD 358
L++ IK+ + + L +
Sbjct: 114 SLRERGIKIGSTTGYTR-EMMDIVAKEAALQGYKP 147
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Aquifex
aeolicus} PDB: 2yy6_A
Length = 222
Score = 32.9 bits (76), Expect = 0.19
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 314 LYRDIPEIVKYLKDHNIKLALASRTVHIRN-----AYSLLHLLGLSDFFDY 359
Y +IP ++ LK KLA+ S N + +L +L LS +FD
Sbjct: 84 PYPEIPYTLEALKSKGFKLAVVS------NKLEELSKKILDILNLSGYFDL 128
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP:
c.108.1.6
Length = 243
Score = 32.6 bits (75), Expect = 0.21
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 314 LYRDIPEIVKYLKDHNIKLALASRTVHIRN-----AYSLLHLLGLSDFFDY 359
LY ++ E ++ LK LA+ + N +L G+ F
Sbjct: 115 LYPNVKETLEALKAQGYILAVVT------NKPTKHVQPILTAFGIDHLFSE 159
>2fdr_A Conserved hypothetical protein; SAD, structural genomics,
agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A
{Agrobacterium tumefaciens str} SCOP: c.108.1.6
Length = 229
Score = 31.5 bits (72), Expect = 0.49
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 318 IPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDYKEIFPAE 366
I + L + S + +L +GL +F I+ A+
Sbjct: 89 IDGVKFALSRLTTPRCICSNSSS-HRLDMMLTKVGLKPYFAPH-IYSAK 135
Score = 31.5 bits (72), Expect = 0.54
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 59 GVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFS 100
GV L L +C+ + +S +L + L YF+
Sbjct: 91 GVKFALSRLTTPRCICSNSSSH----RLDMMLTKVGLKPYFA 128
Score = 27.6 bits (62), Expect = 10.0
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 246 VPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDHK 288
+ + L S + + +L +G+ YF
Sbjct: 89 IDGVKFALSRLTTPRCICSNSSSHR-LDMMLTKVGLKPYFAPH 130
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.70A {Pyrococcus horikoshii}
Length = 241
Score = 31.2 bits (71), Expect = 0.58
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 305 EDAKGTLLNLYRDIPEIVKYLKDHNIKLALAS----RTVHIRNAYSLLHLLGLSDFFDY 359
+ K L +++ LK+ +L + + + + L L DFF++
Sbjct: 86 HNTKFAYLREVPGARKVLIRLKELGYELGIITDGNPVKQWEK-----ILRLELDDFFEH 139
Score = 30.1 bits (68), Expect = 1.4
Identities = 5/48 (10%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 240 IKYYQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
++ ++L L+E + ++ + + + + +F+H
Sbjct: 93 LREVPGARKVLIRLKELGYELGIITDGNPV-KQWEKILRLELDDFFEH 139
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 31.6 bits (71), Expect = 0.64
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 309 GTLLN----LYRDIPEIVKYLKDHNIKLALAS-RTVHIRNAYSLLHLLGLSD----FFDY 359
GTLL+ ++ + L++ N+ + L S +T L LGL +
Sbjct: 18 GTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKT--SAEMLYLQKTLGLQGLPLIAENG 75
Query: 360 KEIFPAEKKIKHFANLKKDSKIKYKDMVFF 389
I AE+ + + S I + ++
Sbjct: 76 AVIQLAEQWQEIDGFPRIISGISHGEISLV 105
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 30.9 bits (71), Expect = 0.79
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 309 GTLLNLYRDIP----EIVKYLKDHNIKLALAS-RTVHIRNAYSLLHLLGLSDFF 357
GT+ R I E ++ + I + L + ++ A + L+G S
Sbjct: 12 GTITYPNRMIHEKALEAIRRAESLGIPIMLVTGN--TVQFAEAASILIGTSGPV 63
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 30.6 bits (69), Expect = 1.1
Identities = 16/150 (10%), Positives = 47/150 (31%), Gaps = 13/150 (8%)
Query: 3 PQSNSLDPSVKKFPKMVVFDLDYTLWPLHVHDL----VAPFKKIGQKVMDAKGTLIKYY- 57
+V+ +V D D T +P + + + + ++ +I +
Sbjct: 9 KSEYKTLSTVEHPQYIVFCDFDETYFPHTIDEQKQQDIYELEDYLEQKSKDGELII-GWV 67
Query: 58 --RGVPEILRYLKENKCL----VAAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTT 111
+ IL + K A+ +EI + + N + ++++ K
Sbjct: 68 TGSSIESILDKMGRGKFRYFPHFIASDLGTEITYFSE-HNFGQQDNKWNSRINEGFSKEK 126
Query: 112 HFESLKKATGIEYKDMVFFDDEERNSHDVS 141
+ +K+ + ++ + +
Sbjct: 127 VEKLVKQLHENHNILLNPQTQLGKSRYKHN 156
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 30.6 bits (68), Expect = 1.5
Identities = 19/159 (11%), Positives = 45/159 (28%), Gaps = 1/159 (0%)
Query: 239 VIKYYQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDHKEIYPRQKTKH 298
+ + Q P + + + + V + R + K+I +Q +
Sbjct: 34 IAERIQRNPELYYHYIQESSKVFPDTKLPRSSLIAENKIYKFKKVKRKRKQIILQQHEIN 93
Query: 299 LKKDRVEDAKGTLLNLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFD 358
+ ++ + T + R N + L ++N L ++ D
Sbjct: 94 IFLRDYQEKQQTFNKINRPEETQEDDKDLPNFERKLQQLEKELKNEDEN-FELDINSKKD 152
Query: 359 YKEIFPAEKKIKHFANLKKDSKIKYKDMVFFDDEERNAR 397
+F + N+ D F +E+
Sbjct: 153 KYALFSSSSDPSRRTNILSDRARDLDLNEIFTRDEQYGE 191
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP:
c.108.1.22 PDB: 1zs9_A
Length = 261
Score = 30.2 bits (67), Expect = 1.6
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 6/106 (5%)
Query: 312 LNLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDY-KEIFPAEKKIK 370
+ D+ V+ ++ +K+ + S + + L D + F + K
Sbjct: 129 AEFFADVVPAVRKWREAGMKVYIYS-SGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHK 187
Query: 371 H----FANLKKDSKIKYKDMVFFDDEERNARSISKLGVIGIQVHRD 412
+ + +++F D R A + + V V R
Sbjct: 188 VESESYRKIADSIGCSTNNILFLTDVTREASAAEEADVHVAVVVRP 233
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST
genomics, joint center for structural genomics, JCSG;
1.81A {Xanthomonas campestris PV}
Length = 251
Score = 30.0 bits (67), Expect = 1.6
Identities = 17/142 (11%), Positives = 44/142 (30%), Gaps = 4/142 (2%)
Query: 273 QNILEMIGVARYFDHKEIYPRQKTKHLKKDRVEDAKGTLLNLYRDIPEIVKYLKDHNIKL 332
+ + + + E + + + + + E V + + +
Sbjct: 72 AKGMTLSMIETAIELTEARIEARDIQRIVEIGRATLQHPVEVIAGVREAVAAIAA-DYAV 130
Query: 333 ALASRTVHIRNAYSLLHLLGLSDFFDYKEIFPAEKKIKHFANLKKDSKIKYKDMVFF-DD 391
L ++ + + GLSD F E+ EK + +A + + + + V +
Sbjct: 131 VLITKGDL-FHQEQKIEQSGLSDLFPRIEVVS-EKDPQTYARVLSEFDLPAERFVMIGNS 188
Query: 392 EERNARSISKLGVIGIQVHRDK 413
+ + +G GI
Sbjct: 189 LRSDVEPVLAIGGWGIYTPYAV 210
Score = 29.6 bits (66), Expect = 2.1
Identities = 25/196 (12%), Positives = 51/196 (26%), Gaps = 67/196 (34%)
Query: 17 KMVVFDLDYTLW---------------------PLHVHDLVAPFKKIGQKVMDAKGT--- 52
++V FD D TLW L + + ++ + G
Sbjct: 14 QLVGFDGDDTLWKSEDYYRTAEADFEAILSGYLDLGDSRMQQHLLAVERRNLKIFGYGAK 73
Query: 53 -------------------------LIKYYR-----------GVPEILRYLKENKCLVAA 76
+++ R GV E + + + +V
Sbjct: 74 GMTLSMIETAIELTEARIEARDIQRIVEIGRATLQHPVEVIAGVREAVAAIAADYAVVLI 133
Query: 77 ASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVFFDDEERN 136
K + L+ F E+ + + + + + V + R+
Sbjct: 134 TKGDLFHQEQK--IEQSGLSDLFPRIEVVSEKDPQTYARVLSEFDLPAERFVMIGNSLRS 191
Query: 137 SHDVSP---LGVTCIH 149
DV P +G I+
Sbjct: 192 --DVEPVLAIGGWGIY 205
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein;
2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Length = 106
Score = 28.6 bits (64), Expect = 1.9
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 206 DDEERNARSISKLGVIGIQVMHSMTNVLDSNGMVIKYYQDVPRILEYLREHNILVAAVST 265
+ EE R S+ GV GI V+ ++ G+ IK D P +Y + + +
Sbjct: 13 EVEETLKRLQSQKGVQGIIVV-------NTEGIPIKSTMDNPTTTQYASLMHSFILKARS 65
Query: 266 TVRILHVQNILEMI 279
TVR + QN L +
Sbjct: 66 TVRDIDPQNDLTFL 79
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST
genomics, PSI-2, protein structure initiative; 1.80A
{Chlorobaculum tepidum} SCOP: c.108.1.6
Length = 234
Score = 29.2 bits (66), Expect = 2.6
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 305 EDAKGTLLNLYRDIPEIVKYLKDH-NIKLALA---SRTVHIRNAYSLLHLLGLSDFFD 358
E A+ + L + E++ L ++ L L + L L G+ +F
Sbjct: 85 ERARREDITLLEGVRELLDALSSRSDVLLGLLTGNFE----ASGRHKLKLPGIDHYFP 138
Score = 28.1 bits (63), Expect = 5.9
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 243 YQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDH 287
+ V +L+ L + ++ + T ++ L++ G+ YF
Sbjct: 95 LEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGIDHYFPF 139
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A
{Streptococcus mutans}
Length = 304
Score = 29.2 bits (66), Expect = 3.1
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 309 GTLLNLYRDIPE-----IVKYLKDHNIKLALAS-RTVHIRNAYSLLHLLGLSDFF 357
GT LN I+K L++ +I+ +AS R F
Sbjct: 46 GTFLNSKGSYDHNRFQRILKQLQERDIRFVVASSN--PYRQLREHFPDCHEQLTF 98
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A
{Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A*
2hf2_A
Length = 271
Score = 29.0 bits (66), Expect = 3.3
Identities = 13/55 (23%), Positives = 16/55 (29%), Gaps = 8/55 (14%)
Query: 309 GTLLNLYRDIP-----EIVKYLKDHNIKLALAS-RTVHIRNAYSLLHLLGLSDFF 357
GT LN + + LK IK +AS S L F
Sbjct: 12 GTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGN--QYYQLISFFPELKDEISF 64
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.51A {Lactobacillus delbrueckii}
Length = 240
Score = 28.8 bits (65), Expect = 4.4
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
Query: 314 LYRDIPEIVKYLKDHNIKLALASRTVHIRN-----AYSLLHLLGLSDFFDY 359
+ I +++K L+ +KLA+ S N L+ L FD+
Sbjct: 111 PFPGILDLMKNLRQKGVKLAVVS------NKPNEAVQVLVEEL-FPGSFDF 154
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD
superfamily, ST genomics, PSI-2, protein structure
initiative; 2.00A {Bacteroides thetaiotaomicron}
Length = 234
Score = 28.7 bits (64), Expect = 4.6
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 314 LYRDIPEIVKYLKDH-NIKLALASRTVHIRNAYSLLHLLGLSDFFDYKEIFPAEKKIKHF 372
L + E +K LK+ KL +A++ + + L GLS +FD+ E+ +K K +
Sbjct: 106 LLPGVKETLKTLKETGKYKLVVATKGDL-LDQENKLERSGLSPYFDHIEVMS-DKTEKEY 163
Query: 373 ANLKKDSKIKYKDMVF 388
L +I +++
Sbjct: 164 LRLLSILQIAPSELLM 179
Score = 28.7 bits (64), Expect = 4.6
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 240 IKYYQDVPRILEYLREHNILVAAVSTTVRILHVQNILEMIGVARYFDHKEI 290
I+ V L+ L+E V+T +L +N LE G++ YFDH E+
Sbjct: 104 IELLPGVKETLKTLKETGKYKLVVATKGDLLDQENKLERSGLSPYFDHIEV 154
Score = 28.3 bits (63), Expect = 5.1
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 13 KKFPKMVVFDLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKE 69
K+ K++ FD D TLW F+++ ++ D L+K Y EI L +
Sbjct: 5 KELIKVIAFDADDTLW-----SNEPFFQEVEKQYTD----LLKPYGTSKEISAALFQ 52
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU
sensitivity of transcription elongation II; 1.70A
{Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Length = 282
Score = 28.6 bits (63), Expect = 4.6
Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 35/206 (16%)
Query: 2 SPQSNSLDPSVKKFPKM-----VVFDLDYTLWPLH--VHDLVAPFKKIGQKVM------- 47
S + +D + P+ FD+D L+ +HDL+ + I +
Sbjct: 38 SKVTFPIDQDISATPQNPNLKVFFFDIDNCLYKSSTRIHDLMQ--QSILRFFQTHLKLSP 95
Query: 48 -DAKGTLIKYYRGV------------PEILRYLKENKCLVAAASRTSEILHAKQILNLIN 94
DA YY+ L Y + + + + +L +
Sbjct: 96 EDAHVLNNSYYKEYGLAIRGLVMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLR 155
Query: 95 LNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHSWLMM 154
+ ++ H + GI + + + + ++
Sbjct: 156 QSGKIDKLWLFTNAYKNHAIRCLRLLGIADLFDGLTYCDYSRTDTLVC--KPHVKAFEKA 213
Query: 155 SSGRLKEATGIDYKDMIYFDDEQEHV 180
+KE+ Y++ + DD +++
Sbjct: 214 ----MKESGLARYENAYFIDDSGKNI 235
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 28.8 bits (65), Expect = 4.7
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 309 GTLLNLYRDIP----EIVKYLKDHNIKLALAS-RTVHIRNAYSLLHLLGLSDF 356
GTLLN + ++ + I++ +++ R + S+ LG+ +
Sbjct: 13 GTLLNSKHQVSLENENALRQAQRDGIEVVVSTGR--AHFDVMSIFEPLGIKTW 63
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola
haloacid dehalogenase-like, PSI; 1.74A {Streptococcus
pneumoniae} SCOP: c.108.1.6
Length = 210
Score = 28.3 bits (64), Expect = 5.2
Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 47/130 (36%)
Query: 14 KFPKMVVFDLDYTL-------------------WPLHVHDLVAPFKKIG-------QKVM 47
+ FDLD TL P + F +G +
Sbjct: 2 TSITAIFFDLDGTLVDSSIGIHNAFTYTFKELGVPSPDAKTIRGF--MGPPLESSFATCL 59
Query: 48 DAKGT--LIKYYR---------------GVPEILRYLKENKCLVAAASRTSEILHAKQIL 90
++ YR + ++L L + L ++ + A+ +
Sbjct: 60 SKDQISEAVQIYRSYYKAKGIYEAQLFPQIIDLLEELSSSYPLYITTTKDTS--TAQDMA 117
Query: 91 NLINLNQYFS 100
+ ++ +F
Sbjct: 118 KNLEIHHFFD 127
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 28.3 bits (64), Expect = 5.8
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 15/105 (14%)
Query: 358 DYKEIFPAEKKIKHFANLKKDSKIKYKDMVFFDD---EERNARSISKLGVIGIQVHRDKV 414
+Y E+ P E ++ L K+ +K + D E A +++LG IGI +H++
Sbjct: 23 NYSEVLPREVSLE--TKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGI-IHKNM- 78
Query: 415 LDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVD 459
++ + +K V AA E+ RA LV+
Sbjct: 79 ------DMESQVNEVLKVK--NSGGLRVGAAIGVNEIERAKLLVE 115
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA
binding protein; 1.60A {Saccharomyces cerevisiae} PDB:
2f8k_A 2fe9_A
Length = 88
Score = 26.4 bits (58), Expect = 6.9
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 139 DVSPLGVTCIHSWLMMSSGRLKEAT----GIDYKDMIYFDDEQEHVNDISKLGVTA 190
P + I WL S RL + + G + ++IY DDE + K GV A
Sbjct: 12 LTDPKLLKNIPMWL--KSLRLHKYSDALSGTPWIELIYLDDE-----TLEKKGVLA 60
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 27.9 bits (63), Expect = 7.4
Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 317 DIPEIVKYLKDHNIKLALASRT---VHIRNAYSLLHLLGLSDFFDYKEIFPAEKKIKHFA 373
I E+V LK + ++ S+ ++ + + L ++KI +
Sbjct: 88 LIKEVVCLLKKREVAFSIESQEKVFMNQKAKEIFETMNQLKGTNSCINKQHIQEKITYEN 147
Query: 374 NLKKDSKIKYKDMVFFDDEERNARSISKL 402
N+++ + + +E+ L
Sbjct: 148 NIEEYKSQDIHKICLWSNEKVFDEVKDIL 176
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 28.3 bits (64), Expect = 7.9
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 241 KYYQDVPRILEYLREHN 257
Y + PRI E+ +E N
Sbjct: 243 PYTLNGPRIHEFHQEMN 259
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 28.3 bits (64), Expect = 7.9
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 234 DSNGMVIKYYQDVPRILEYLRE 255
+ K++ + P I +YL E
Sbjct: 218 EGYVSGHKHFMNGPNIHKYLHE 239
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast
structural genom consortium, NESG, unknown function;
1.59A {Pyrococcus horikoshii} PDB: 1x42_A
Length = 234
Score = 27.7 bits (62), Expect = 8.4
Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 8/124 (6%)
Query: 352 GLSDFFDYKEIFP--AEKKIKHFANLKKDSKIKYKDMVFFDDEERNARSISKL----GVI 405
L + +P + + + L +++ Y + + + KL G
Sbjct: 23 HLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRPLRDILEEVMRKLAEKYGFK 82
Query: 406 GIQVHRDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 465
+ + L + Y +V +LK LK + TE +D
Sbjct: 83 YPENFWEISLRMSQRYGELYPEVVEVLKSLKGKYHVGMITDSDTEQAM--AFLDALGIKD 140
Query: 466 HFDH 469
FD
Sbjct: 141 LFDS 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.398
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,517,371
Number of extensions: 539666
Number of successful extensions: 1707
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1649
Number of HSP's successfully gapped: 179
Length of query: 538
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 440
Effective length of database: 3,965,535
Effective search space: 1744835400
Effective search space used: 1744835400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)