RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8912
(538 letters)
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 164
Score = 79.5 bits (195), Expect = 4e-18
Identities = 74/138 (53%), Positives = 87/138 (63%), Gaps = 2/138 (1%)
Query: 14 KFPKMVVFDLDYTLWPLHV-HDLVAPFKKIGQ-KVMDAKGTLIKYYRGVPEILRYLKENK 71
+ PK+ VFDLDYTLWP V + PF K V D +G I+ Y VPE+L L+
Sbjct: 3 RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLG 62
Query: 72 CLVAAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVFFD 131
VAAASRTSEI A Q+L L +L +YF +EIYPG K THFE L TG+ + MVFFD
Sbjct: 63 VPVAAASRTSEIQGANQLLELFDLGKYFIQREIYPGSKVTHFERLHHKTGVPFSQMVFFD 122
Query: 132 DEERNSHDVSPLGVTCIH 149
DE RN DV LGVTCIH
Sbjct: 123 DENRNIIDVGRLGVTCIH 140
Score = 70.2 bits (171), Expect = 7e-15
Identities = 60/127 (47%), Positives = 81/127 (63%)
Query: 411 RDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK 470
V D G I+ Y +VP +L L+ VAAASRT+E+ A+QL++LF+ ++F +
Sbjct: 34 DGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGKYFIQR 93
Query: 471 EIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHKG 530
EI+PG K THF L TG+ + MVFFDDE RN DV LGVTCIH++DGMS L +G
Sbjct: 94 EIYPGSKVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHIRDGMSLQTLTQG 153
Query: 531 LKQWASK 537
L+ +A
Sbjct: 154 LETFAKA 160
Score = 43.7 bits (102), Expect = 9e-06
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 297 KHLKKDRVEDAKGTLLNLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDF 356
V D +G + LY ++PE++ L+ + +A ASRT I+ A LL L L +
Sbjct: 30 HKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGKY 89
Query: 357 FDYKEIFPAEKKIKHFANLKKDSKIKYKDMVFFDDEERNARSISKLGVIGIQV 409
F +EI+P K+ HF L + + + MVFFDDE RN + +LGV I +
Sbjct: 90 FIQREIYP-GSKVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHI 141
Score = 28.3 bits (62), Expect = 1.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 193 KDSKIKYKDMVFFDDEERNARSISKLGVIGIQVMHSMT 230
+ + + MVFFDDE RN + +LGV I + M+
Sbjct: 109 HKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHIRDGMS 146
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 35.2 bits (80), Expect = 0.018
Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 41/170 (24%)
Query: 310 TLLNLYRDIPEIVKYLKDHNIKLALASRTVHIRNAYSLLHLLGLSDFFDYKEIF------ 363
+L ++ ++ LK +L +A+ LGL +F+ I
Sbjct: 212 IILRPVDEVKVLLNDLKGAGFELGIATGR-PYTETVVPFENLGLLPYFEADFIATASDVL 270
Query: 364 -------------------------PAEKKIKHFANLKKDSKIKYKDMVFFDDEERNARS 398
+ K+D+ + D+ D + S
Sbjct: 271 EAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLS 330
Query: 399 ISKLGVIGIQV-------HRDKVLDAGGA--IIKYYRDVPAILKYLKQNN 439
K+G I L+A A +I + ++ +L L +++
Sbjct: 331 AQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNLLEHH 380
Score = 33.6 bits (76), Expect = 0.054
Identities = 24/207 (11%), Positives = 55/207 (26%), Gaps = 39/207 (18%)
Query: 52 TLIKYYRGVPEILRYLKENKCLVAAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTT 111
+++ V +L LK + A+ + L YF I
Sbjct: 212 IILRPVDEVKVLLNDLKGAGFELGIATGRPYT-ETVVPFENLGLLPYFEADFIATASDVL 270
Query: 112 HFESLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHSWLMMSSGRLKEATGIDYKDMI 171
E++ K F ++ S K+ ++ D+
Sbjct: 271 EAENMYPQARPLGKPNPFSYIAALYGNNRDKYE-----------SYINKQDNIVNKDDVF 319
Query: 172 YFDDEQEHVNDISKLGVTATRKDSKIKYKDMVFFDDEERNARSISKLGVIGIQVMHSMTN 231
D + D+ + + + G++ +
Sbjct: 320 IVGD---SLADLLSA-----------------------QKIGATFIGTLTGLKGKDAAGE 353
Query: 232 VLDSNG-MVIKYYQDVPRILEYLREHN 257
+ + VI + ++ +L+ L EH+
Sbjct: 354 LEAHHADYVINHLGELRGVLDNLLEHH 380
>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 222
Score = 34.3 bits (77), Expect = 0.022
Identities = 22/195 (11%), Positives = 42/195 (21%), Gaps = 14/195 (7%)
Query: 336 SRTVHIRNAYSLLHLLGLSDFFDYKEIFPAEKKIKHFANLKKDSKIKYKDMVFFDDEERN 395
L + E + K M +
Sbjct: 14 PSIAGAFRRSEEALALPRDFLLGAYQTEFPEGPTEQLMKGKITFSQWVPLMDESYRKSSK 73
Query: 396 ARSISKLGVIGIQVHRDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVA---------AAS 446
A + I + + A R + LK+
Sbjct: 74 ACGANLPENFSISQIFSQAMAA----RSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDK 129
Query: 447 RTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSH 506
R + +L F++ + + L + ++VF DD N
Sbjct: 130 RDSLAQMMCELSQHFDFLIESCQ-VGMIKPEPQIYNFLLDTLKAKPNEVVFLDDFGSNLK 188
Query: 507 DVSPLGVTCIHVKDG 521
+G+ I V +
Sbjct: 189 PARDMGMVTILVHNT 203
Score = 32.8 bits (73), Expect = 0.073
Identities = 25/209 (11%), Positives = 57/209 (27%), Gaps = 9/209 (4%)
Query: 17 KMVVFDLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAA 76
++ FDLD L + F++ + + + L+ Y+ + K +
Sbjct: 1 RVAAFDLDGVLAL---PSIAGAFRRSEEALALPRDFLLGAYQTEFPEGPTEQLMKGKITF 57
Query: 77 ASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVFFDDEERN 136
+ + + + + N I S A + M+ +
Sbjct: 58 SQWVPLMDESYRKSSKACGANLPENFSIS------QIFSQAMAARSINRPMLQAAIALKK 111
Query: 137 SHDVSPLGVTCIHSWLMMSSGRLKEATGIDYKDMIYFDDEQEHVNDISKLGVTATRKDSK 196
+ + + + + Q + K
Sbjct: 112 KGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQVGMIKPEPQIYNFLLDTLK 171
Query: 197 IKYKDMVFFDDEERNARSISKLGVIGIQV 225
K ++VF DD N + +G++ I V
Sbjct: 172 AKPNEVVFLDDFGSNLKPARDMGMVTILV 200
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase
domain {Bacteriophage T4 [TaxId: 10665]}
Length = 149
Score = 32.4 bits (73), Expect = 0.054
Identities = 20/146 (13%), Positives = 33/146 (22%), Gaps = 23/146 (15%)
Query: 16 PKMVVFDLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVA 75
PK V+FD+D TL +K V E+ + +
Sbjct: 7 PKAVIFDVDGTLA-KMNGRGPYDLEKCDT---------DVINPMVVELSKMYALMGYQIV 56
Query: 76 AASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFES-------------LKKATGI 122
S ++ + P E K
Sbjct: 57 VVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAP 116
Query: 123 EYKDMVFFDDEERNSHDVSPLGVTCI 148
+ + DD + +GV C
Sbjct: 117 HFDVKLAIDDRTQVVEMWRRIGVECW 142
Score = 26.6 bits (58), Expect = 4.6
Identities = 14/132 (10%), Positives = 24/132 (18%), Gaps = 13/132 (9%)
Query: 403 GVIGIQVHRDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN 462
G + R V + K + S +
Sbjct: 16 GTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRM 75
Query: 463 WNQHFDHKEIFPGQKTTHFAN-------------LKKATGIEYKDMVFFDDEERNSHDVS 509
+ + P K + + DD +
Sbjct: 76 TRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWR 135
Query: 510 PLGVTCIHVKDG 521
+GV C V G
Sbjct: 136 RIGVECWQVASG 147
>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 225
Score = 32.5 bits (72), Expect = 0.093
Identities = 28/194 (14%), Positives = 51/194 (26%), Gaps = 12/194 (6%)
Query: 336 SRTVHIRNAYSLLHLLGLSDFFDYKEIFPAEKKIKHFANLKKDSKIKYKDMVFFDDEERN 395
+ L D + E +I + +E
Sbjct: 16 PAVFGVLGRTEEALALPRGLLNDAFQKGGPEGATTRL----MKGEITLSQWIPLMEENCR 71
Query: 396 ARSISKLGVIGIQVHRDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAH 455
S + + ++ D + K R + L++ A + T RA
Sbjct: 72 KCSETAKVCLPKNFSIKEIFDKAISARKINRPMLQAALMLRKKGFTTAILTNTWLDDRAE 131
Query: 456 QL---VDLFNWNQHFDH-----KEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHD 507
+ + HFD + + + L ++VF DD N
Sbjct: 132 RDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPSEVVFLDDIGANLKP 191
Query: 508 VSPLGVTCIHVKDG 521
LG+ I V+D
Sbjct: 192 ARDLGMVTILVQDT 205
Score = 29.0 bits (63), Expect = 1.2
Identities = 35/210 (16%), Positives = 61/210 (29%), Gaps = 11/210 (5%)
Query: 17 KMVVFDLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAA 76
+ VFDLD L V ++ ++ + R +K L
Sbjct: 3 RAAVFDLDGVLALPAVFGVLGRTEEALALPRGLLNDAFQKGGPEGATTRLMKGEITLSQW 62
Query: 77 ASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVFFDDEERN 136
E + L + FS KEI F+ A I + M+ R
Sbjct: 63 IPLMEENCRKCSETAKVCLPKNFSIKEI--------FDKAISARKI-NRPMLQAALMLRK 113
Query: 137 SHDVSPLGVTCIHSWLMMSSGRLKEATGI-DYKDMIYFDDEQEHVNDISKLGVTATRKDS 195
+ + G + + + D + + V ++
Sbjct: 114 KGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQI-YKFLLDTL 172
Query: 196 KIKYKDMVFFDDEERNARSISKLGVIGIQV 225
K ++VF DD N + LG++ I V
Sbjct: 173 KASPSEVVFLDDIGANLKPARDLGMVTILV 202
>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II
polypeptide A small phosphatase 1, NRAMP1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 181
Score = 29.6 bits (66), Expect = 0.60
Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 5/124 (4%)
Query: 16 PKMVVFDLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYR-GVPEILRYLKENKCLV 74
VV DLD TL + I ++ + R V E L+ + E V
Sbjct: 15 KICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECV 74
Query: 75 AAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLK--KATGIEYKDMVFFDD 132
+ ++ +A + +L++ F + +K G + + ++ D+
Sbjct: 75 LFTASLAK--YADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDN 132
Query: 133 EERN 136
+
Sbjct: 133 SPAS 136
>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3'
phosphatase, middle domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 195
Score = 28.9 bits (64), Expect = 1.00
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 10/79 (12%)
Query: 9 DPSVKKFPKMVVFDLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLK 68
VK K+ FDLD TL + G+ + Y +P+ L+ L
Sbjct: 14 ASGVKPQGKVAAFDLDGTLI----------TTRSGKVFPTSPSDWRILYPEIPKKLQELA 63
Query: 69 ENKCLVAAASRTSEILHAK 87
+ + I K
Sbjct: 64 AEGYKLVIFTNQMGIGRGK 82
>d2hz5a1 d.110.7.1 (A:5-94) Dynein light chain 2A, cytoplasmic
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 27.4 bits (61), Expect = 1.3
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 208 EERNARSISKLGVIGIQVMHSMTNVLDSNGMVIKYYQDVPRILEYLREHNILVAAVSTTV 267
EE R S+ GV GI V+ ++ G+ IK D P +Y + + +TV
Sbjct: 1 EETLKRLQSQKGVQGIIVV-------NTEGIPIKSTMDNPTTTQYASLMHSFILKARSTV 53
Query: 268 RILHVQNILEMI 279
R + QN L +
Sbjct: 54 RDIDPQNDLTFL 65
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 28.8 bits (63), Expect = 1.6
Identities = 17/145 (11%), Positives = 39/145 (26%), Gaps = 12/145 (8%)
Query: 17 KMVVFDLDYTL------WPLHVHDLVAPFKKIGQKVMDAKG----TLIKYYRGVPEILRY 66
++ D+D L + + +K G V G + +
Sbjct: 4 RLAAIDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGPV 63
Query: 67 LKENKCLVAAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKD 126
EN ++ + + + + N + S + T + I+ +D
Sbjct: 64 FGENGGIMFDNDGSIKKFFSNEGTN--KFLEEMSKRTSMRSILTNRWREASTGFDIDPED 121
Query: 127 MVFFDDEERNSHDVSPLGVTCIHSW 151
+ + E + V H
Sbjct: 122 VDYVRKEAESRGFVIFYSGYSWHLM 146
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS
(YggB), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 101
Score = 27.3 bits (60), Expect = 1.7
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 269 ILHVQNILEMIGVARYFDHKEIYPRQKTKHLKKD------RVEDAKGTLLNLYRDIPEIV 322
I V+ IL I + K+ + L RV G L N+Y D+ E +
Sbjct: 19 IDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERI 78
Query: 323 KY-LKDHNIKLALASRTVHIRN 343
K I V+ +
Sbjct: 79 KREFDAAGISFPYPQMDVNFKR 100
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 28.4 bits (62), Expect = 2.0
Identities = 16/178 (8%), Positives = 47/178 (26%), Gaps = 17/178 (9%)
Query: 16 PKMVVFDLDYTLWPLHVHDLVA------PFKKIGQKVMDAKGTLIKYYRGVPEILRYLKE 69
++ D D T+ + + + V+ ++ + + +L +
Sbjct: 4 KPFIICDFDGTITMNDNIINIMKTFAPPEWMALKDGVLSKTLSIKEGVGRMFGLLPSSLK 63
Query: 70 NKCLVAAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVF 129
+ ++ + +N++ + G L + KD ++
Sbjct: 64 EEITSFVLEDAKIREGFREFVA--FINEHEIPFYVISGGMDFFVYPLLEGIVE--KDRIY 119
Query: 130 FDDEERNSHDVSPLGVTCIHSWLMMSSGRLK----EATGIDYKDMIYFDDEQEHVNDI 183
+ ++ + G K + +I D V D+
Sbjct: 120 CNHASFDNDYIHIDWPHSCKGTCSNQCGCCKPSVIHELSEPNQYIIMIGD---SVTDV 174
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia
coli [TaxId: 562]}
Length = 197
Score = 27.8 bits (60), Expect = 3.1
Identities = 21/208 (10%), Positives = 55/208 (26%), Gaps = 25/208 (12%)
Query: 18 MVVFDLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAAA 77
+ +FDL + + + ++ + + + + + + R ++ A
Sbjct: 2 LYIFDLGNVIVDIDFNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAEAL 61
Query: 78 SRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVFFDDEERNS 137
+ + + F +A + + V +
Sbjct: 62 CHEMALPLSYE-----------------------QFSHGWQAVFVALRPEVIAIMHKLRE 98
Query: 138 HDVSPLGVTCIHSWLMMSSGRLKEATGIDYKDMIYFDDEQEHVNDISKLGVTATRKDSKI 197
+ ++ + +E I + + + +
Sbjct: 99 QGHRVVVLSNTNRLHTTF--WPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGF 156
Query: 198 KYKDMVFFDDEERNARSISKLGVIGIQV 225
D VFFDD N ++LG+ I V
Sbjct: 157 SPSDTVFFDDNADNIEGANQLGITSILV 184
>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 27.5 bits (59), Expect = 3.6
Identities = 29/239 (12%), Positives = 64/239 (26%), Gaps = 14/239 (5%)
Query: 17 KMVVFDLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVAA 76
+ V FD TL + + K + + + D ++ R N
Sbjct: 3 RAVFFDFVGTLLSVE-GEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSN--YAGK 59
Query: 77 ASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVFFDDEERN 136
R + + + L + + + H + + E
Sbjct: 60 PYRPIRDIEEEVMRKLAEKYGFKYPENFWEIHLRMHQRYGELYPEVV---------EVLK 110
Query: 137 SHDVSPLGVTCIHSWLMMSSGRLKEATGIDYKDMIYFDDEQEHVNDISKLGVTATRKDSK 196
S S L D D I +E ++ A +K
Sbjct: 111 SLKGKYHVGMITDSDTEYLMAHLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGV 170
Query: 197 IKYKDMVFFDDEERNARSISKLGVIGIQVMHSMTNVLDSNG--MVIKYYQDVPRILEYL 253
+ + D+ ++ LG+ I + + ++ ++V +I++ L
Sbjct: 171 KGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREVIKIVDEL 229
>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 210
Score = 27.1 bits (58), Expect = 5.2
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 17 KMVVFDLDYTLW---PLHVHDLVAPFKKIGQKVMDAK 50
+ FDLD TL + FK++G DAK
Sbjct: 5 TAIFFDLDGTLVDSSIGIHNAFTYTFKELGVPSPDAK 41
>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 247
Score = 26.7 bits (57), Expect = 6.1
Identities = 31/244 (12%), Positives = 69/244 (28%), Gaps = 17/244 (6%)
Query: 17 KMVVFDLDYTLW---PLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCL 73
+ V FDLD TL ++ K + K + I + +K +K
Sbjct: 7 RAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKV------QVKLSKEC 60
Query: 74 VAAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVFFDDE 133
S + I + ++ + ++S + I D+ E
Sbjct: 61 FHPYSTCITDVRTSHWEEAIQETKGGADNRKLAEECYFLWKSTRLQHMILADDVKAMLTE 120
Query: 134 ERNSHDVSPLGVTCIHSWLMMSSGRLKEATGIDYKDMIYFDDEQEHVNDISKLGVTATRK 193
R + L + + Y D I EQ+ +
Sbjct: 121 LRKEVRLLLLTNGDRQTQREKI----EACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDL 176
Query: 194 DSKIKYKDMVFFDDEERNARSISKLGVIGIQVMHSMTNVLDSNG----MVIKYYQDVPRI 249
++ D E + + G+ ++ V ++ ++ ++P +
Sbjct: 177 LGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLELPAL 236
Query: 250 LEYL 253
L+ +
Sbjct: 237 LQSI 240
>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph
{Haemophilus somnus [TaxId: 731]}
Length = 224
Score = 26.8 bits (57), Expect = 6.1
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 13 KKFPKMVVFDLDYTLW---PLHVHDLVAPFKKIGQKVMD 48
+F K++ FDLD TL P + + K +
Sbjct: 2 TQF-KLIGFDLDGTLVNSLPDLALSINSALKDVNLPQAS 39
>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId:
562]}
Length = 218
Score = 26.7 bits (57), Expect = 6.8
Identities = 17/213 (7%), Positives = 46/213 (21%), Gaps = 14/213 (6%)
Query: 17 KMVVFDLDYTLW---PLHVHDLVAPFKKIGQKVMDA----KGTLIKYYRGVPEILRYLKE 69
+FD+D L PL + +G + ++ V
Sbjct: 4 LAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPW 63
Query: 70 NKCLVAAASRTSEILHAKQILNLINLNQYFSNKEIYPGQKTTHFESLKKATGIEYKDMVF 129
N + L ++ + + ++
Sbjct: 64 NGPSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLT 123
Query: 130 FDDEERNSHDVSPLGVTCIHSWLMMSSGRLKEATGIDYKDMIYFDDEQEHVNDISKLGVT 189
D + ++ G+D + +D + +
Sbjct: 124 MFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMR 183
Query: 190 A-------TRKDSKIKYKDMVFFDDEERNARSI 215
+ + D + ++ E A+ +
Sbjct: 184 SIVVPAPEAQNDPRFVLANVKLSSLTELTAKDL 216
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 26.1 bits (56), Expect = 7.7
Identities = 14/142 (9%), Positives = 34/142 (23%), Gaps = 9/142 (6%)
Query: 199 YKDMVFFDDEERNARSISKLGVIGIQVMHSMTNVLDSNGMVIKYYQDVPRILEYLREHNI 258
Y + DEE + G + + I Q
Sbjct: 40 YTANLGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYF 99
Query: 259 LVAAVSTTVRILHVQNILEMIGVARYFDHKEIYPRQKTKHLKKDRVEDAKGTLLNLYRDI 318
+ V + ++ GV + D + + + +A+ + + D
Sbjct: 100 NTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDT 159
Query: 319 ---------PEIVKYLKDHNIK 331
E+ +++
Sbjct: 160 DFIDELGGRHEMSEFMIACGFD 181
>d1m3ya1 b.121.2.3 (A:25-221) Major capsid protein vp54 {Paramecium
bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}
Length = 197
Score = 26.0 bits (56), Expect = 9.1
Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 3/99 (3%)
Query: 116 LKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHSWLMMSSGR---LKEATGIDYKDMIY 172
L + Y D + + + G L + K
Sbjct: 95 LFRMNDDRYNYRRMTDWVNNELVGAQKRFYVPLIFFFNQTPGLALPLIALQYHEVKLYFT 154
Query: 173 FDDEQEHVNDISKLGVTATRKDSKIKYKDMVFFDDEERN 211
+ + VN + + + + D +F D +ER
Sbjct: 155 LASQVQGVNYNGSSAIAGAAQPTMSVWVDYIFLDTQERT 193
>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 243
Score = 26.2 bits (56), Expect = 9.6
Identities = 31/259 (11%), Positives = 67/259 (25%), Gaps = 27/259 (10%)
Query: 16 PKMVVFDLDYTLWPLHVHDLVAPFKKIGQKVMDAKGTLIKYYRGVPEILRYLKENKCLVA 75
P + +FD+D TL P +KI +++ D L+ L++ +
Sbjct: 3 PALCLFDVDGTLTA--------PRQKITKEMDDF--------------LQKLRQKIKIGV 40
Query: 76 AASRTSEILHAKQILNLINLNQYFSNK---EIYPGQKTTHFESLKKATGIEYKDMVFFDD 132
E + + +++ Y + Y K ++++ G +
Sbjct: 41 VGGSDFEKVQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYC 100
Query: 133 EERNSHDVSPLGVTCIHSWLMMSSGRLKEATGIDYKDMIYFDDEQEHVNDISKLGVTATR 192
+ P + ++ I F + + N K +
Sbjct: 101 LSYIAKIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRK 160
Query: 193 KDSKIKYKDMVFFDDE-ERNARSISKLGVIGIQVMHSMTNVLDSNGMVIKYYQDVPRILE 251
+ + + + K + + + D I
Sbjct: 161 EFAGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHE-IFT 219
Query: 252 YLREHNILVAAVSTTVRIL 270
R V A T RI
Sbjct: 220 DPRTMGYSVTAPEDTRRIC 238
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.398
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,079,558
Number of extensions: 103789
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 58
Length of query: 538
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 448
Effective length of database: 1,171,896
Effective search space: 525009408
Effective search space used: 525009408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)