BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8915
         (220 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d
          Length = 354

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 95  DFGFEIIEFLLPISPR--YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSL 152
           D     I +L    P+  Y +P EH          LFP   R      L   VA+I P++
Sbjct: 195 DMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAF-LRHKVALISPTV 253

Query: 153 LTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLS 201
           L E G+  +R+ QE G+F++ FP  + +    G+  AE++ FA P W+ 
Sbjct: 254 LKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWID 302


>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
           H3k9me3 Peptide And 2-oxoglutarate
 pdb|4HON|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
           H3k9me3 Peptide And 2-oxoglutarate
          Length = 330

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 95  DFGFEIIEFLLPISPR--YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSL 152
           D     I +L    P+  Y +P EH          LFP   R      L   VA+I P++
Sbjct: 184 DMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAF-LRHKVALISPTV 242

Query: 153 LTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLS 201
           L E G+  +R+ QE G+F++ FP  + +    G+  AE++ FA P W+ 
Sbjct: 243 LKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWID 291


>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
 pdb|4HOO|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
          Length = 330

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 95  DFGFEIIEFLLPISPR--YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSL 152
           D     I +L    P+  Y +P EH          LFP   R      L   VA+I P++
Sbjct: 184 DMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAF-LRHKVALISPTV 242

Query: 153 LTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLS 201
           L E G+  +R+ QE G+F++ FP  + +    G+  AE++ FA P W+ 
Sbjct: 243 LKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWID 291


>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And
           N- Oxalylglycine
          Length = 337

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 95  DFGFEIIEFLLPISPR--YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSL 152
           D     I +L    P+  Y +P EH          LFP   R      L   VA+I P++
Sbjct: 188 DMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAF-LRHKVALISPTV 246

Query: 153 LTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLS 201
           L E G+  +R+ QE G+F++ FP  + +    G+  AE++ FA P W+ 
Sbjct: 247 LKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWID 295


>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
           Loc390245
 pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
           Loc390245
 pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
           Loc390245
          Length = 358

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 111 YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQF 170
           Y +P EH          LFP   R  +   L   VA+I P++L E G+  + + QE G+F
Sbjct: 232 YVVPPEHGQHLERLARELFPDISRGCEAF-LRHKVALISPTVLKENGIPFNCMTQEAGEF 290

Query: 171 ILVFPSAFTSSIATGYLVAESVYFARPSWLS 201
           ++ FP  + +    G+  AE++ FA P W+ 
Sbjct: 291 MVTFPYGYHAGFNHGFNCAEAINFATPRWID 321


>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With
           A-Ketoglutarate
 pdb|3OPW|A Chain A, Crystal Structure Of The Rph1 Catalytic Core
          Length = 373

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 111 YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQF 170
           Y IP E    F   M   FP   ++     L   + +  P LL E G+  + +V   G+F
Sbjct: 256 YSIPQEDRFKFYKFMQEQFPEEAKNCPEF-LRHKMFLASPKLLQENGIRCNEIVHHEGEF 314

Query: 171 ILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFK 208
           ++ +P  + +    GY +AESV FA   WL   ++  K
Sbjct: 315 MITYPYGYHAGFNYGYNLAESVNFALEEWLPIGKKAGK 352


>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain
 pdb|2XML|B Chain B, Crystal Structure Of Human Jmjd2c Catalytic Domain
          Length = 348

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 111 YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQF 170
           Y IP EH           FP   +      L   + +I PS+L + G+   ++ QE G+F
Sbjct: 212 YAIPPEHGKRLERLAQGFFPSSSQGCDAF-LRHKMTLISPSVLKKYGIPFDKITQEAGEF 270

Query: 171 ILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIYKTRQYCLKV 219
           ++ FP  + +    G+  AES  FA   W+    +V K+   R+  +K+
Sbjct: 271 MITFPYGYHAGFNHGFNCAESTNFATVRWIDYG-KVAKLCTCRKDMVKI 318


>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a
 pdb|2WWJ|B Chain B, Structure Of Jmjd2a Complexed With Inhibitor 10a
          Length = 348

 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 111 YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQF 170
           Y +P EH           FP   +S +   L   + +I P +L + G+   +V QE G+F
Sbjct: 203 YSVPPEHGKRLERLAKGFFPGSAQSCEAF-LRHKMTLISPLMLKKYGIPFDKVTQEAGEF 261

Query: 171 ILVFPSAFTSSIATGYLVAESVYFARPSWLS 201
           ++ FP  + +    G+  AES  FA   W+ 
Sbjct: 262 MITFPYGYHAGFNHGFNCAESTNFATRRWIE 292


>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36
           Peptide
 pdb|2PXJ|B Chain B, The Complex Structure Of Jmjd2a And Monomethylated H3k36
           Peptide
          Length = 347

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 111 YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQF 170
           Y +P EH           FP   +S +   L   + +I P +L + G+   +V QE G+F
Sbjct: 208 YSVPPEHGKRLERLAKGFFPGSAQSCEAF-LRHKMTLISPLMLKKYGIPFDKVTQEAGEF 266

Query: 171 ILVFPSAFTSSIATGYLVAESVYFARPSWLS 201
           ++ FP  + +    G+  AES  FA   W+ 
Sbjct: 267 MITFPYGYHAGFNHGFNCAESTNFATRRWIE 297


>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36
           Peptide
 pdb|2P5B|B Chain B, The Complex Structure Of Jmjd2a And Trimethylated H3k36
           Peptide
 pdb|2Q8C|A Chain A, Crystal Structure Of Jmjd2a In Ternary Complex With An
           Histone H3k9me3 Peptide And 2-Oxoglutarate
 pdb|2Q8C|B Chain B, Crystal Structure Of Jmjd2a In Ternary Complex With An
           Histone H3k9me3 Peptide And 2-Oxoglutarate
 pdb|2Q8D|A Chain A, Crystal Structure Of Jmj2d2a In Ternary Complex With
           Histone H3-K36me2 And Succinate
 pdb|2Q8D|B Chain B, Crystal Structure Of Jmj2d2a In Ternary Complex With
           Histone H3-K36me2 And Succinate
 pdb|2Q8E|A Chain A, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
           Specific Histone Demethylase
 pdb|2Q8E|B Chain B, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
           Specific Histone Demethylase
          Length = 352

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 111 YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQF 170
           Y +P EH           FP   +S +   L   + +I P +L + G+   +V QE G+F
Sbjct: 211 YSVPPEHGKRLERLAKGFFPGSAQSCEAF-LRHKMTLISPLMLKKYGIPFDKVTQEAGEF 269

Query: 171 ILVFPSAFTSSIATGYLVAESVYFARPSWLS 201
           ++ FP  + +    G+  AES  FA   W+ 
Sbjct: 270 MITFPYGYHAGFNHGFNCAESTNFATRRWIE 300


>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
           Peptide Trimethylated At Lys9
 pdb|2OQ6|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
           Peptide Trimethylated At Lys9
 pdb|2OQ7|A Chain A, The Crystal Structure Of Jmjd2a Complexed With Ni And
           N-Oxalylglycine
 pdb|2OQ7|B Chain B, The Crystal Structure Of Jmjd2a Complexed With Ni And
           N-Oxalylglycine
 pdb|2OS2|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
           Peptide Trimethylated At Lys36
 pdb|2OS2|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
           Peptide Trimethylated At Lys36
 pdb|2OT7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
           Peptide Monomethylated At Lys9
 pdb|2OT7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
           Peptide Monomethylated At Lys9
 pdb|2OX0|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
           Peptide Dimethylated At Lys9
 pdb|2OX0|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
           Peptide Dimethylated At Lys9
 pdb|2VD7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
           Pyridine-2,4-Dicarboxylic Acid
 pdb|2VD7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
           Pyridine-2,4-Dicarboxylic Acid
 pdb|3NJY|A Chain A, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
           Hydroxyquinoline
 pdb|3NJY|B Chain B, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
           Hydroxyquinoline
 pdb|2YBP|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
           H3k36me3 Peptide (30-41)
 pdb|2YBP|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
           H3k36me3 Peptide (30-41)
 pdb|2YBS|A Chain A, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
           H3k36me3 Peptide (30-41)
 pdb|2YBS|B Chain B, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
           H3k36me3 Peptide (30-41)
 pdb|3PDQ|A Chain A, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
           Inhibitor
 pdb|3PDQ|B Chain B, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
           Inhibitor
 pdb|2YBK|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate
 pdb|2YBK|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate
 pdb|3U4S|A Chain A, Histone Lysine Demethylase Jmjd2a In Complex With T11c
           Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
 pdb|3U4S|B Chain B, Histone Lysine Demethylase Jmjd2a In Complex With T11c
           Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
 pdb|3RVH|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
 pdb|3RVH|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
 pdb|4GD4|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
 pdb|4GD4|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
 pdb|4AI9|A Chain A, Jmjd2a Complexed With Daminozide
 pdb|4AI9|B Chain B, Jmjd2a Complexed With Daminozide
          Length = 381

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 111 YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQF 170
           Y +P EH           FP   +S +   L   + +I P +L + G+   +V QE G+F
Sbjct: 231 YSVPPEHGKRLERLAKGFFPGSAQSCEAF-LRHKMTLISPLMLKKYGIPFDKVTQEAGEF 289

Query: 171 ILVFPSAFTSSIATGYLVAESVYFARPSWLS 201
           ++ FP  + +    G+  AES  FA   W+ 
Sbjct: 290 MITFPYGYHAGFNHGFNCAESTNFATRRWIE 320


>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
 pdb|2GP3|B Chain B, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
 pdb|2GP5|A Chain A, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
           Complexed With Alpha-Ketoglutarate
 pdb|2GP5|B Chain B, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
           Complexed With Alpha-Ketoglutarate
          Length = 349

 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 111 YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQF 170
           Y +P EH           FP   +S +   L   + +I P +L + G+   +V QE G+F
Sbjct: 208 YSVPPEHGKRLERLAKGFFPGSAQSCEAF-LRHKMTLISPLMLKKYGIPFDKVTQEAGEF 266

Query: 171 ILVFPSAFTSSIATGYLVAESVYFARPSWLS 201
           ++ FP  + +    G+  AES  FA   W+ 
Sbjct: 267 MITFPYGYHAGFNHGFNCAESTNFATRRWIE 297


>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
           Heat Shock Transcription Factor
 pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
           Heat Shock Transcription Factor
          Length = 106

 Score = 27.3 bits (59), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 48  SNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNSL----VDRISFGKIDFGFEIIEF 103
            +G  F     + FAK    L    NN AS +R LN      +  I  G + F  + IEF
Sbjct: 28  KDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEF 87

Query: 104 LLPISPR 110
             P   R
Sbjct: 88  SHPFFKR 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,779,929
Number of Sequences: 62578
Number of extensions: 204842
Number of successful extensions: 397
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 13
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)