Query psy8915
Match_columns 220
No_of_seqs 145 out of 538
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 22:43:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0958|consensus 100.0 9E-57 1.9E-61 426.7 9.7 185 7-209 105-307 (690)
2 KOG1246|consensus 100.0 2E-47 4.3E-52 383.1 12.4 219 1-220 230-476 (904)
3 PF02373 JmjC: JmjC domain, hy 100.0 7.4E-30 1.6E-34 195.0 6.8 98 93-194 15-114 (114)
4 smart00558 JmjC A domain famil 97.8 1.7E-05 3.6E-10 53.8 2.7 43 64-109 1-57 (57)
5 KOG1356|consensus 94.0 0.058 1.3E-06 54.4 4.1 103 110-212 742-850 (889)
6 KOG2131|consensus 92.8 0.22 4.7E-06 46.3 5.4 87 99-201 221-308 (427)
7 PF13621 Cupin_8: Cupin-like d 91.0 0.47 1E-05 39.9 5.3 98 89-197 135-248 (251)
8 KOG2130|consensus 79.3 4 8.6E-05 37.6 5.2 95 93-199 196-301 (407)
9 PF08007 Cupin_4: Cupin superf 68.4 8.6 0.00019 34.7 4.7 46 158-203 173-218 (319)
10 KOG1246|consensus 44.9 16 0.00036 37.7 2.6 96 94-197 655-752 (904)
11 PF13721 SecD-TM1: SecD export 37.1 29 0.00063 26.3 2.3 27 151-177 53-79 (101)
12 TIGR03792 uncharacterized cyan 33.4 60 0.0013 24.3 3.4 47 111-173 7-53 (90)
13 COG1791 Uncharacterized conser 28.6 49 0.0011 27.9 2.4 43 155-202 112-161 (181)
14 PRK10629 EnvZ/OmpR regulon mod 27.0 52 0.0011 26.1 2.2 51 151-201 57-117 (127)
15 COG2731 EbgC Beta-galactosidas 24.3 77 0.0017 26.0 2.8 26 160-185 111-136 (154)
16 KOG1905|consensus 23.9 97 0.0021 28.5 3.6 42 12-56 31-75 (353)
17 COG2140 Thermophilic glucose-6 23.5 90 0.002 27.0 3.2 35 160-194 125-159 (209)
18 TIGR00022 uncharacterized prot 23.3 83 0.0018 24.9 2.8 25 158-182 110-134 (142)
19 PF04074 DUF386: Domain of unk 22.5 90 0.002 24.9 2.9 23 159-181 111-133 (153)
20 TIGR03225 benzo_boxB benzoyl-C 21.9 48 0.001 31.5 1.3 23 105-127 91-114 (471)
No 1
>KOG0958|consensus
Probab=100.00 E-value=9e-57 Score=426.72 Aligned_cols=185 Identities=28% Similarity=0.551 Sum_probs=170.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHhhccCCCCceeEEeecccCCCCCCCCCCCCCCCccccccccCccCCCCCchHH--hhcc
Q psy8915 7 SDNPNDPGSNPSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILR--SLNS 84 (220)
Q Consensus 7 ~~~~~~~~~~~~~~~iE~~yW~~v~~~~~~v~V~gadl~s~~~Gsgfp~~~~~~y~~~~WNL~nlp~~~~SlL~--~l~~ 84 (220)
++.|.+|....+.+|+|++|||+++... ++||||+. ||.|+.. ...||+++|+ .+|. ..+.
T Consensus 105 s~~y~tpr~~~d~~dle~kYWKnltf~~---PiYGaD~~----gSi~~~~------~~~WNi~~L~----tild~~~~~~ 167 (690)
T KOG0958|consen 105 SDKYCTPRGSQDFEDLEQKYWKNLTFDS---PIYGADIN----GSIYDED------LDEWNIARLD----TILDLEECGI 167 (690)
T ss_pred hcccCCCcccccHHHHHHHHHhcccCCC---CcccccCC----CccCccc------cccccccccc----chhchhhcce
Confidence 4556677767799999999999999998 79999998 9999987 8999999995 4453 5554
Q ss_pred -ccCc----eeec---------ccccccceeeeeeCCCC--ceecCcchHHHHHHHHHhhccchhhcCCCcccccccccc
Q psy8915 85 -LVDR----ISFG---------KIDFGFEIIEFLLPISP--RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMI 148 (220)
Q Consensus 85 -i~G~----lyvG---------~ED~~l~SinYlH~G~p--WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i 148 (220)
|.|| ||+| +||++||||||||||+| ||+||++|.++||+++.+++|+..+ +|+.||||++++|
T Consensus 168 ~i~gvNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~-~C~aFLRHK~~Li 246 (690)
T KOG0958|consen 168 IIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQ-GCPAFLRHKMTLI 246 (690)
T ss_pred eecccCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCcccc-CCHHHHhhccccc
Confidence 8888 9999 89999999999999999 9999999999999999999999987 8999999999999
Q ss_pred CchhhhhcCCceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHHH
Q psy8915 149 PPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKI 209 (220)
Q Consensus 149 ~P~~L~~~gI~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~~ 209 (220)
+|.+|+++|||+.+++|++||||||||++||+|||+||||||++|||+++|++||++|.+.
T Consensus 247 SP~~LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK~a~~C 307 (690)
T KOG0958|consen 247 SPSVLKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGKQALLC 307 (690)
T ss_pred CHHHHHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999988753
No 2
>KOG1246|consensus
Probab=100.00 E-value=2e-47 Score=383.10 Aligned_cols=219 Identities=27% Similarity=0.521 Sum_probs=204.2
Q ss_pred CccccCCCCCCCCCCCCC-hHHHHHHHHhhccCCCCceeEE-eecccCCCCCCCCCCCCC--------CCccccccccCc
Q psy8915 1 MAMYFKSDNPNDPGSNPS-PAEVESEFWNHVTNRMLHICVH-SASIDTGSNGCGFPTAKN--------STFAKHPWNLKV 70 (220)
Q Consensus 1 ma~~fk~~~~~~~~~~~~-~~~iE~~yW~~v~~~~~~v~V~-gadl~s~~~Gsgfp~~~~--------~~y~~~~WNL~n 70 (220)
||+.|+..||.++.+... ++++|++||++|......++|+ |+|+.+..+|||||.... .+|+.++|||++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~~~~~y~~s~wnL~~ 309 (904)
T KOG1246|consen 230 YADNFKKDYFPKSKNSPDSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGSEAEKYSNSGWNLNN 309 (904)
T ss_pred HhhhhhccccccccCCCCchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCcchhhhccCcccccc
Confidence 688999999998888777 9999999999999998888887 999999999999998641 478999999999
Q ss_pred cCCCCCchHHhhcc-ccCc----eeec---------ccccccceeeeeeCCCC--ceecCcchHHHHHHHHHhhccchhh
Q psy8915 71 LTNNSASILRSLNS-LVDR----ISFG---------KIDFGFEIIEFLLPISP--RYGIPDEHSTAFRSTMMSLFPHYCR 134 (220)
Q Consensus 71 lp~~~~SlL~~l~~-i~G~----lyvG---------~ED~~l~SinYlH~G~p--WY~IP~~~~~kfe~~~~~~~p~~~~ 134 (220)
+|.+.+|+|++.+. |+|+ +|+| +||+.++|+||+|+|+| ||+||++++++||+++++..|+++.
T Consensus 310 i~~~~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~~e~~~~~~~p~~~~ 389 (904)
T KOG1246|consen 310 IPRLEGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEKFEKAMNKLSPGLFI 389 (904)
T ss_pred cccCCccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHHHHHHHHhhCCcccc
Confidence 99999999999985 7887 9999 89999999999999999 9999999999999999999999999
Q ss_pred cCCCccccccccccCchhhhhcCCceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHHHHh--h
Q psy8915 135 SDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIYK--T 212 (220)
Q Consensus 135 ~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~~y~--~ 212 (220)
++++ .+++..++++|..|.++|||+++++|+|||||||||++||+|||+||||+|+|||||.+||+.|+.+.+.|+ .
T Consensus 390 ~~pd-~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~~~~~~~~~~ 468 (904)
T KOG1246|consen 390 EQPD-LLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRGAAEAYSLLL 468 (904)
T ss_pred cCcc-cccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHHHHHHHHhhc
Confidence 6554 688889999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cCcccccC
Q psy8915 213 RQYCLKVD 220 (220)
Q Consensus 213 ~~~~~~~~ 220 (220)
+...+|||
T Consensus 469 ~~~lfs~~ 476 (904)
T KOG1246|consen 469 RLSLFSHD 476 (904)
T ss_pred cCCccCHH
Confidence 77778875
No 3
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.96 E-value=7.4e-30 Score=195.00 Aligned_cols=98 Identities=23% Similarity=0.425 Sum_probs=84.0
Q ss_pred ccccccceeeeeeCCCC--ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCCceeEeeeCCCcE
Q psy8915 93 KIDFGFEIIEFLLPISP--RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQF 170 (220)
Q Consensus 93 ~ED~~l~SinYlH~G~p--WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGef 170 (220)
+||..++|+||+|.|++ ||+||++++++||+++++. ..+ +++.+++++..++.|+.|+++|||+++++|+|||+
T Consensus 15 ~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~p~~l~~~gi~~~~~~Q~~Ge~ 90 (114)
T PF02373_consen 15 IEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSK---ESQ-NCPQFLDHKNIFVSPEQLKKAGIPVYRFVQKPGEF 90 (114)
T ss_dssp E-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHH---HHH-HSTTGGCTGGEEEGHHHHHHTTS--EEEEEETT-E
T ss_pred ecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhc---ccc-cccccccccccccceeeeeccCcccccceECCCCE
Confidence 89999999999999999 9999999999999999988 222 35566899999999999999999999999999999
Q ss_pred EEEccCcceeecccCccceeeccc
Q psy8915 171 ILVFPSAFTSSIATGYLVAESVYF 194 (220)
Q Consensus 171 vvtfP~aYh~gfn~G~n~aEavnF 194 (220)
|||+|++||+++|.|++++||+||
T Consensus 91 V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 91 VFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp EEE-TT-EEEEEESSSEEEEEEEE
T ss_pred EEECCCceEEEEeCCceEEEEecC
Confidence 999999999999999999999998
No 4
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=97.79 E-value=1.7e-05 Score=53.83 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=37.2
Q ss_pred cccccCccCCCCCchHHhhc-cccCc----eeec---------ccccccceeeeeeCCCC
Q psy8915 64 HPWNLKVLTNNSASILRSLN-SLVDR----ISFG---------KIDFGFEIIEFLLPISP 109 (220)
Q Consensus 64 ~~WNL~nlp~~~~SlL~~l~-~i~G~----lyvG---------~ED~~l~SinYlH~G~p 109 (220)
..||++++|. +++++++++ .++|+ +|+| .|++++ +||+|.|++
T Consensus 1 ~~~~l~~lP~-~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 1 QLNNLAKLPF-KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred CcchhhhCCC-cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecCC
Confidence 3699999999 899999997 47776 8999 799888 999999874
No 5
>KOG1356|consensus
Probab=94.04 E-value=0.058 Score=54.41 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=82.4
Q ss_pred ceecCcchHHHHHHHHHhhccchhhcCCCcc--ccccccccCc---hhh-hhcCCceeEeeeCCCcEEEEccCcceeecc
Q psy8915 110 RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIW--LSSDVAMIPP---SLL-TEKGVSLSRVVQEPGQFILVFPSAFTSSIA 183 (220)
Q Consensus 110 WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~--l~h~~~~i~P---~~L-~~~gI~v~~~~Q~pGefvvtfP~aYh~gfn 183 (220)
|=+.+..+++|.++++++..++.-....... ++-++..+.- ..| .+.||.--.++|..||.|+.-.||-|.+-|
T Consensus 742 WhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrN 821 (889)
T KOG1356|consen 742 WHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRN 821 (889)
T ss_pred hhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhh
Confidence 9999999999999999998776544221110 1222333333 223 346999999999999999999999999999
Q ss_pred cCccceeecccCCcccHHHHHHHHHHHhh
Q psy8915 184 TGYLVAESVYFARPSWLSTCERVFKIYKT 212 (220)
Q Consensus 184 ~G~n~aEavnFa~~~Wl~~g~~~~~~y~~ 212 (220)
.-..+.-|+.|..|.-+....+-.+.||.
T Consensus 822 LkSCikVa~DFVSPE~v~ec~rLT~EfR~ 850 (889)
T KOG1356|consen 822 LKSCIKVAEDFVSPEHVSECFRLTQEFRQ 850 (889)
T ss_pred hhhHHHHHHhhCChhhHHHHHHHHHHHhh
Confidence 99999999999999999998888888876
No 6
>KOG2131|consensus
Probab=92.79 E-value=0.22 Score=46.32 Aligned_cols=87 Identities=13% Similarity=0.052 Sum_probs=59.8
Q ss_pred ceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCCceeEeeeCCCcEEEEccCc
Q psy8915 99 EIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSA 177 (220)
Q Consensus 99 ~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGefvvtfP~a 177 (220)
+|-.-+-+|.+ |..+||.+..++ ++...++ -.-+.-..|.....+...+.|+|||.|++--|=
T Consensus 221 ~swS~nicG~KrWl~~pP~qe~~l----~dr~gnl------------p~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 221 PSWSVNICGRKRWLLYPPEQEQTL----ADRYGNL------------PLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred CcceeeeecceeEEEeChHHhhhh----hhhccCc------------CCccccccccccccchhhhhccCCceeeccCcc
Confidence 33344468999 999999996654 3322211 011122235566677789999999999998889
Q ss_pred ceeecccCccceeecccCCcccHH
Q psy8915 178 FTSSIATGYLVAESVYFARPSWLS 201 (220)
Q Consensus 178 Yh~gfn~G~n~aEavnFa~~~Wl~ 201 (220)
||.+.|.|=.++-.=|.+-..=|.
T Consensus 285 ~hQV~NL~dTISINHNW~N~~nl~ 308 (427)
T KOG2131|consen 285 HHQVLNLGDTISINHNWCNATNLA 308 (427)
T ss_pred ccccccccceeeecccccccccHH
Confidence 999999998888776666554443
No 7
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=91.01 E-value=0.47 Score=39.94 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=54.1
Q ss_pred eeec--------ccccccceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCcc----ccccccccCchhhhh
Q psy8915 89 ISFG--------KIDFGFEIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIW----LSSDVAMIPPSLLTE 155 (220)
Q Consensus 89 lyvG--------~ED~~l~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~----l~h~~~~i~P~~L~~ 155 (220)
|++| --|. ...++-+-.|.+ |..+||++...+ .+.-.......+ +.....-..|. ++
T Consensus 135 l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l-------~~~~~~~~~~~~~~~d~~~~d~~~~p~-~~- 204 (251)
T PF13621_consen 135 LWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNL-------YPRPDSHGGTVFSWVDPDNPDLERFPK-FR- 204 (251)
T ss_dssp EEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGC-------TBETTTST-TCBBSS-TTS--TTT-CG-GG-
T ss_pred EEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCcccccc-------ccceecccccceeeeeccChhhhhhhh-hc-
Confidence 8888 2333 345555668999 999999997643 221110000000 00111111222 12
Q ss_pred cCCceeEeeeCCCcEEEEccCcceeeccc---CccceeecccCCc
Q psy8915 156 KGVSLSRVVQEPGQFILVFPSAFTSSIAT---GYLVAESVYFARP 197 (220)
Q Consensus 156 ~gI~v~~~~Q~pGefvvtfP~aYh~gfn~---G~n~aEavnFa~~ 197 (220)
.++...++++|||.++.-++-+|.+.|. +++++-.+.|-++
T Consensus 205 -~~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 205 -KAPPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp -G--EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred -cCceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 2388999999999999999999999999 4677776666554
No 8
>KOG2130|consensus
Probab=79.32 E-value=4 Score=37.59 Aligned_cols=95 Identities=13% Similarity=0.037 Sum_probs=60.7
Q ss_pred ccccccceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchh----------hhhcCCcee
Q psy8915 93 KIDFGFEIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSL----------LTEKGVSLS 161 (220)
Q Consensus 93 ~ED~~l~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~----------L~~~gI~v~ 161 (220)
++.+.+..-|-+-.|.. |..+|+.--.-.-+. .++.-.++++ ..|.+-. +-.. -+-.
T Consensus 196 IDPlgTSAWNtll~GhKrW~LfPp~~p~~lvkv----~~~e~g~~~d-------e~itwf~~~y~rt~~Pswp~E-~kPI 263 (407)
T KOG2130|consen 196 IDPLGTSAWNTLLQGHKRWVLFPPGTPPELVKV----TVDEGGKQPD-------EIITWFSTIYPRTQLPSWPDE-YKPI 263 (407)
T ss_pred ECCcchHHHHHHhhccceeEEcCCCCCCCceee----cccccCCCCc-------ceechhhhccccccCCCCccc-cCCc
Confidence 56666777788889999 999998752211100 1111111111 1121111 1111 2334
Q ss_pred EeeeCCCcEEEEccCcceeecccCccceeecccCCccc
Q psy8915 162 RVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSW 199 (220)
Q Consensus 162 ~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~W 199 (220)
.+.|.|||-|++--+=+|..+|.-..+|-.-|||...=
T Consensus 264 Ec~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eN 301 (407)
T KOG2130|consen 264 ECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKEN 301 (407)
T ss_pred eeeecCCceEEecCCeEEEEeccCceeeeeeccccccC
Confidence 67899999999999999999999999999999998753
No 9
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=68.39 E-value=8.6 Score=34.75 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=37.4
Q ss_pred CceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHH
Q psy8915 158 VSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTC 203 (220)
Q Consensus 158 I~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g 203 (220)
-++..++-+||+.+..-++..|.+...|.++.-++.|-++.|.++-
T Consensus 173 ~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl~ 218 (319)
T PF08007_consen 173 EPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADLL 218 (319)
T ss_dssp STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHHH
T ss_pred ceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhHH
Confidence 5677899999999999999999999999999999999999998754
No 10
>KOG1246|consensus
Probab=44.89 E-value=16 Score=37.74 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=66.1
Q ss_pred cccccceeeeee-CCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCCceeEeeeCCCcEE
Q psy8915 94 IDFGFEIIEFLL-PISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFI 171 (220)
Q Consensus 94 ED~~l~SinYlH-~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGefv 171 (220)
|...+.|+|-.+ -|+- |+.||.++..+.++.+.+.--.+.. ...|-. .-..|...+|++++.+|++|.++
T Consensus 655 ~n~~~~s~~~n~~p~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~w~~------~~~~l~~~~i~~~~~~~~~~~~~ 726 (904)
T KOG1246|consen 655 ENSALASININLGPGDCVWFAVPLEYWGVVEDACEKHNLKYSD--SSVWPS------SEEELLNLVIPVQKFIQKAGDLV 726 (904)
T ss_pred HHHHHhhhhccCCcccceeeecccchhHHHHHHHhhccccccc--hhccch------hhHHHHhccchHHHHHhcccccc
Confidence 555566777666 2324 9999999999988776654221111 000000 22457888999999999999999
Q ss_pred EEccCcceeecccCccceeecccCCc
Q psy8915 172 LVFPSAFTSSIATGYLVAESVYFARP 197 (220)
Q Consensus 172 vtfP~aYh~gfn~G~n~aEavnFa~~ 197 (220)
-...+.+|..-..|+...-+.|.+..
T Consensus 727 ~~~~~~~~~~~~~~~~~nv~~~v~~~ 752 (904)
T KOG1246|consen 727 YVGNGTVHWVQVLGFCINVSWNVSES 752 (904)
T ss_pred ccCCceEEEeeecCccccceeccccc
Confidence 99999999998888854444444443
No 11
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=37.05 E-value=29 Score=26.26 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.9
Q ss_pred hhhhhcCCceeEeeeCCCcEEEEccCc
Q psy8915 151 SLLTEKGVSLSRVVQEPGQFILVFPSA 177 (220)
Q Consensus 151 ~~L~~~gI~v~~~~Q~pGefvvtfP~a 177 (220)
..|.++||.+.++.++.+..+|.|..+
T Consensus 53 ~~L~~~~I~~k~i~~~~~~llirf~~~ 79 (101)
T PF13721_consen 53 QALKAAGIAVKSIEQEGDSLLIRFDST 79 (101)
T ss_pred HHHHHCCCCcceEEeeCCEEEEEECCH
Confidence 358899999999999999999999753
No 12
>TIGR03792 uncharacterized cyanobacterial protein, TIGR03792 family. Members of this family are found, no more than one to a genome, exclusively in (but not universal to) the Cyanobacteria. These proteins are small, 100-150 amino acids. The function is unknown.
Probab=33.43 E-value=60 Score=24.27 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=31.9
Q ss_pred eecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCCceeEeeeCCCcEEEE
Q psy8915 111 YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILV 173 (220)
Q Consensus 111 Y~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGefvvt 173 (220)
+-|||...+.|+++.+..+-..+. ..+.|+.+. +.+..+.|+++++.
T Consensus 7 ~~V~p~~~~~f~~a~~~~w~~~l~-~~~GFlg~e---------------v~~~~e~pee~~ll 53 (90)
T TIGR03792 7 FKVPPEDREAFLEADEEIWTPWLA-KQPGFLGKE---------------VWWDPEKPEEGVLL 53 (90)
T ss_pred EeeChhhHHHHHHHHHHHHHHHHH-hCCCccceE---------------EEecCCCCCEEEEE
Confidence 358999999999999998544444 356676553 33444457777664
No 13
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=28.63 E-value=49 Score=27.86 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=34.0
Q ss_pred hcCCceeEeeeCCCcEEEEccCcceeecccCccceeeccc-------CCcccHHH
Q psy8915 155 EKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYF-------ARPSWLST 202 (220)
Q Consensus 155 ~~gI~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnF-------a~~~Wl~~ 202 (220)
...=+++.+...+|++|..-|+.|| =|.+.|+-|| .++.|.+.
T Consensus 112 ~~d~~~~~i~c~~gDLI~vP~gi~H-----wFtlt~~~~f~AvRlF~~~~gWVa~ 161 (181)
T COG1791 112 SPDGKVYQIRCEKGDLISVPPGIYH-----WFTLTESPNFKAVRLFTEPEGWVAI 161 (181)
T ss_pred CCCCcEEEEEEccCCEEecCCCceE-----EEEccCCCcEEEEEEeeCCCCceee
Confidence 3344788999999999999999999 4677777776 56788764
No 14
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=26.97 E-value=52 Score=26.07 Aligned_cols=51 Identities=20% Similarity=0.447 Sum_probs=35.9
Q ss_pred hhhhhcCCceeEeeeCCCcEEEEccCcce---------eecccCccceeeccc-CCcccHH
Q psy8915 151 SLLTEKGVSLSRVVQEPGQFILVFPSAFT---------SSIATGYLVAESVYF-ARPSWLS 201 (220)
Q Consensus 151 ~~L~~~gI~v~~~~Q~pGefvvtfP~aYh---------~gfn~G~n~aEavnF-a~~~Wl~ 201 (220)
+.|.++||++..+.++.+..+|.|...=- ...+.+|-++-..-= ++|.||.
T Consensus 57 ~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p~~tP~WL~ 117 (127)
T PRK10629 57 QHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDNSQAMQWLT 117 (127)
T ss_pred HHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCCCcchHHHH
Confidence 45889999999999999999999986422 233445555433333 4578986
No 15
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=24.30 E-value=77 Score=26.04 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=20.3
Q ss_pred eeEeeeCCCcEEEEccCcceeecccC
Q psy8915 160 LSRVVQEPGQFILVFPSAFTSSIATG 185 (220)
Q Consensus 160 v~~~~Q~pGefvvtfP~aYh~gfn~G 185 (220)
=..+.-.||.|+|.||+--|.--+.+
T Consensus 111 e~~v~L~~G~faiFfP~e~H~P~c~~ 136 (154)
T COG2731 111 ESTVELNPGMFAIFFPGEPHRPGCNV 136 (154)
T ss_pred ceEEEeCCCCEEEECCCCcccccccc
Confidence 34677899999999999888655444
No 16
>KOG1905|consensus
Probab=23.88 E-value=97 Score=28.53 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=32.4
Q ss_pred CCCCCCChHHHHHHHHhhccCCC--CceeEE-eecccCCCCCCCCCCC
Q psy8915 12 DPGSNPSPAEVESEFWNHVTNRM--LHICVH-SASIDTGSNGCGFPTA 56 (220)
Q Consensus 12 ~~~~~~~~~~iE~~yW~~v~~~~--~~v~V~-gadl~s~~~Gsgfp~~ 56 (220)
+|..--+++.||.++|.+..-.. .++-|+ ||-|.| ++|-|.=
T Consensus 31 ~~e~~D~~e~l~~kv~elA~li~~sk~lvv~tGAGIST---aa~IPDf 75 (353)
T KOG1905|consen 31 RPEEFDPPEVLRTKVEELAQLIQQSKHLVVYTGAGIST---AAGIPDF 75 (353)
T ss_pred CccccCCHHHHHHHHHHHHHHHhhCCcEEEEeCCcccc---ccCCCCc
Confidence 56666789999999999877333 467788 999988 6787764
No 17
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=23.51 E-value=90 Score=26.98 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=29.3
Q ss_pred eeEeeeCCCcEEEEccCcceeecccCccceeeccc
Q psy8915 160 LSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYF 194 (220)
Q Consensus 160 v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnF 194 (220)
+..+.+++|+-|++-|+-.|..+|.|-.=..-+|.
T Consensus 125 ~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v 159 (209)
T COG2140 125 ARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNV 159 (209)
T ss_pred EEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEE
Confidence 77889999999999999999999999665544443
No 18
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=23.28 E-value=83 Score=24.93 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=20.4
Q ss_pred CceeEeeeCCCcEEEEccCcceeec
Q psy8915 158 VSLSRVVQEPGQFILVFPSAFTSSI 182 (220)
Q Consensus 158 I~v~~~~Q~pGefvvtfP~aYh~gf 182 (220)
.+-..+.-.||+|+|.||.=-|..-
T Consensus 110 ~~~~~i~l~~G~faiffP~D~H~P~ 134 (142)
T TIGR00022 110 DDEQTVILKPGMFAVFYPGEPHKPG 134 (142)
T ss_pred CCceEEEeCCCcEEEECCCCccccc
Confidence 4556888999999999999777653
No 19
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=22.45 E-value=90 Score=24.91 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=15.1
Q ss_pred ceeEeeeCCCcEEEEccCcceee
Q psy8915 159 SLSRVVQEPGQFILVFPSAFTSS 181 (220)
Q Consensus 159 ~v~~~~Q~pGefvvtfP~aYh~g 181 (220)
.-..+.-.||+|+|.||.--|..
T Consensus 111 ~~~~i~l~~g~f~iffP~d~H~p 133 (153)
T PF04074_consen 111 NESFITLKPGDFAIFFPEDAHRP 133 (153)
T ss_dssp TEEEEEE-TTEEEEE-TT--EEE
T ss_pred CceEEEEcCCEEEEECCCccccc
Confidence 34466778999999999988874
No 20
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=21.86 E-value=48 Score=31.49 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.0
Q ss_pred eCCCC-ceecCcchHHHHHHHHHh
Q psy8915 105 LPISP-RYGIPDEHSTAFRSTMMS 127 (220)
Q Consensus 105 H~G~p-WY~IP~~~~~kfe~~~~~ 127 (220)
|.|.+ |+-||+++.+.+.+++.-
T Consensus 91 hkGe~awqevPgE~r~~L~riIv~ 114 (471)
T TIGR03225 91 HKGEPAWQEVPGEYRSMLRRLIVI 114 (471)
T ss_pred ccccchHhhCCHHHHHHHHHHHhh
Confidence 78888 999999999988887754
Done!