Query psy8915
Match_columns 220
No_of_seqs 145 out of 538
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 22:44:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dxt_A JMJC domain-containing 100.0 3.1E-60 1.1E-64 428.2 13.8 189 7-210 107-311 (354)
2 2ox0_A JMJC domain-containing 100.0 2.8E-60 9.5E-65 433.0 11.5 181 16-210 133-329 (381)
3 3opt_A DNA damage-responsive t 100.0 2E-59 6.7E-64 425.1 13.2 174 18-209 164-353 (373)
4 2xxz_A Lysine-specific demethy 100.0 6.3E-36 2.2E-40 268.5 7.1 137 66-212 172-329 (332)
5 3avr_A Lysine-specific demethy 100.0 3.6E-35 1.2E-39 277.1 10.0 142 61-212 226-388 (531)
6 4ask_A Lysine-specific demethy 100.0 1.6E-33 5.6E-38 262.9 10.3 138 66-212 206-366 (510)
7 2ypd_A Probable JMJC domain-co 97.9 1.5E-05 5.1E-10 72.6 6.9 103 110-212 236-344 (392)
8 3kv4_A PHD finger protein 8; e 96.1 0.019 6.4E-07 53.3 8.7 104 89-208 235-348 (447)
9 3k3o_A PHF8, PHD finger protei 96.0 0.018 6.1E-07 52.3 7.8 104 89-208 151-264 (371)
10 3pua_A GRC5, PHD finger protei 95.8 0.021 7.4E-07 52.1 7.4 105 89-209 178-292 (392)
11 4gjz_A Lysine-specific demethy 95.6 0.026 8.9E-07 46.0 6.9 86 99-194 145-234 (235)
12 3kv9_A JMJC domain-containing 95.6 0.034 1.2E-06 50.9 8.0 105 89-209 179-293 (397)
13 3k2o_A Bifunctional arginine d 95.5 0.072 2.4E-06 47.5 9.7 109 89-203 176-298 (336)
14 3kv5_D JMJC domain-containing 95.3 0.041 1.4E-06 51.6 7.7 104 89-208 270-383 (488)
15 2yu1_A JMJC domain-containing 94.9 0.11 3.8E-06 48.2 9.3 94 98-207 218-312 (451)
16 3pur_A Lysine-specific demethy 94.5 0.13 4.4E-06 48.6 8.8 93 98-206 318-411 (528)
17 3d8c_A Hypoxia-inducible facto 90.2 0.91 3.1E-05 40.2 8.1 87 99-194 204-295 (349)
18 3al5_A HTYW5, JMJC domain-cont 82.9 1.1 3.8E-05 39.4 4.3 87 100-197 189-276 (338)
19 1vrb_A Putative asparaginyl hy 64.0 12 0.0004 32.9 6.0 50 158-209 215-266 (342)
20 4diq_A Lysine-specific demethy 30.4 86 0.003 29.1 6.1 82 103-205 190-275 (489)
21 4hpq_A ATG31, KLTH0C07942P; au 24.9 77 0.0026 21.6 3.5 30 5-34 14-44 (69)
22 1iuj_A Hypothetical protein TT 24.7 1.2E+02 0.0041 20.6 4.9 22 111-132 8-29 (106)
23 2gjf_A Designed protein; proca 23.9 1.3E+02 0.0046 19.8 4.8 62 103-165 3-77 (78)
24 2gu9_A Tetracenomycin polyketi 23.7 62 0.0021 22.0 3.1 35 162-196 63-97 (113)
25 3hx9_A Protein RV3592; DI-heme 23.6 1.2E+02 0.0042 22.3 4.9 46 111-173 9-54 (124)
26 2pfw_A Cupin 2, conserved barr 23.4 67 0.0023 22.2 3.3 24 162-185 73-96 (116)
27 2y0o_A Probable D-lyxose ketol 21.8 66 0.0023 25.7 3.2 24 160-183 118-141 (175)
No 1
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=100.00 E-value=3.1e-60 Score=428.22 Aligned_cols=189 Identities=25% Similarity=0.487 Sum_probs=175.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHhhccCCCCceeEEeecccCCCCCCCCCCCCCCCccccccccCccCCCCCchHHhhcc-c
Q psy8915 7 SDNPNDPGSNPSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNS-L 85 (220)
Q Consensus 7 ~~~~~~~~~~~~~~~iE~~yW~~v~~~~~~v~V~gadl~s~~~Gsgfp~~~~~~y~~~~WNL~nlp~~~~SlL~~l~~-i 85 (220)
++++.+|.+ .+.++||++|||++.... +.||||++ ||+||.. .++|||+|||...++||++++. |
T Consensus 107 ~~~~~~p~~-~~~~~lE~~fW~~~~~~~---p~YgaD~~----gS~F~~~------~~~WNL~~L~~~~~~Ll~~~~~~I 172 (354)
T 3dxt_A 107 SKKYQTPPH-QNFEDLERKYWKNRIYNS---PIYGADIS----GSLFDEN------TKQWNLGHLGTIQDLLEKECGVVI 172 (354)
T ss_dssp STTTSCCCC-SSHHHHHHHHHHHGGGCC---CEEEEEEE----CCCSCTT------CCSSCTTSSCCHHHHHHHHHCCCC
T ss_pred hhhccCCCC-CCHHHHHHHHhhhcccCC---ceeeecCC----CcccCCC------cchhhhhhccchhHHHHhhcCCCC
Confidence 455667655 589999999999998765 57899998 9999986 6899999999999999999985 9
Q ss_pred cCc----eeec---------ccccccceeeeeeCCCC--ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCc
Q psy8915 86 VDR----ISFG---------KIDFGFEIIEFLLPISP--RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPP 150 (220)
Q Consensus 86 ~G~----lyvG---------~ED~~l~SinYlH~G~p--WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P 150 (220)
+|| ||+| +||++|+||||+|+|+| ||+||+++++|||++|++.+|++++ .|+++|+|++++++|
T Consensus 173 ~GVntP~LYiGm~~Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~k~~~p~~~~-~c~~fL~h~~~lisP 251 (354)
T 3dxt_A 173 EGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSR-GCGAFLRHKVALISP 251 (354)
T ss_dssp CCCCCCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHSHHHHH-HCTTGGGGCCEEECH
T ss_pred CCccceeeeeccccCCCcceecCCcceEEEEEecCCceEEEEeCHHHHHHHHHHHHHhCchhhh-hcHHHHhcCcccCCH
Confidence 999 9999 89999999999999999 9999999999999999999999988 578899999999999
Q ss_pred hhhhhcCCceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHHHH
Q psy8915 151 SLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIY 210 (220)
Q Consensus 151 ~~L~~~gI~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~~y 210 (220)
+.|+++||||++++|+|||||||||++||+|||+||||+||||||+++||++|+.|.+..
T Consensus 252 ~~L~~~GIpv~~~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~A~~C~ 311 (354)
T 3dxt_A 252 TVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCS 311 (354)
T ss_dssp HHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCGGGHHHHHHCCCCC
T ss_pred HHHHHCCCceEEEEeCCCcEEEECCCceEEEeeccccHhHhhccCcHHHHHhhhhccccc
Confidence 999999999999999999999999999999999999999999999999999999886544
No 2
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=100.00 E-value=2.8e-60 Score=433.03 Aligned_cols=181 Identities=22% Similarity=0.449 Sum_probs=169.7
Q ss_pred CCChHHHHHHHHhhccCCCCceeEEeecccCCCCCCCCCCCCCCCccccccccCccCCCCCchHHhhcc-ccCc----ee
Q psy8915 16 NPSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNS-LVDR----IS 90 (220)
Q Consensus 16 ~~~~~~iE~~yW~~v~~~~~~v~V~gadl~s~~~Gsgfp~~~~~~y~~~~WNL~nlp~~~~SlL~~l~~-i~G~----ly 90 (220)
..+.++||++|||+|+... ..||||++ ||+|+.. .++|||++||.+.++||++++. |+|| ||
T Consensus 133 ~~~~~~lE~~fWr~v~~~~---~~YgaD~~----gS~f~~~------~~~WNL~~Lp~ll~~ll~~~~~~I~GVn~P~LY 199 (381)
T 2ox0_A 133 YSEFEELERKYWKNLTFNP---PIYGADVN----GTLYEKH------VDEWNIGRLRTILDLVEKESGITIEGVNTPYLY 199 (381)
T ss_dssp CSSHHHHHHHHHHHTTSSC---CEEEEEEE----CCCSCTT------CCSSCTTCCCCGGGHHHHHHCCCCBTTTSCEEE
T ss_pred cCCHHHHHHHHHhhCCcCC---ceeecCCC----cccCCCC------CCCCchhhhhhHHHHHHHhcCCCCCCcccceEE
Confidence 3589999999999999754 35799998 7888875 6899999999999999999986 9998 99
Q ss_pred ec---------ccccccceeeeeeCCCC--ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCCc
Q psy8915 91 FG---------KIDFGFEIIEFLLPISP--RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVS 159 (220)
Q Consensus 91 vG---------~ED~~l~SinYlH~G~p--WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~ 159 (220)
+| +||++|+||||+|+|+| ||+||+++++|||++|++.+|++++ +|+++|+|++++++|+.|+++|||
T Consensus 200 iGm~~S~f~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~P~~~~-~~~~~L~h~~~~isP~~L~~~GIp 278 (381)
T 2ox0_A 200 FGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQ-SCEAFLRHKMTLISPLMLKKYGIP 278 (381)
T ss_dssp EECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHSHHHHH-HCTTGGGGSCEEECHHHHHHTTCC
T ss_pred eeccccCcCceecCCcceeeEEeecCCceEEEecCHHHHHHHHHHHHHhChhhhh-cchHHhhccccccCHHHHHHCCCc
Confidence 99 89999999999999999 9999999999999999999999998 577899999999999999999999
Q ss_pred eeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHHHH
Q psy8915 160 LSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIY 210 (220)
Q Consensus 160 v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~~y 210 (220)
|+|++|+|||||||||+|||+|||+||||+||||||+++||++|+.|.+..
T Consensus 279 v~r~vQ~pGEfViTfP~aYH~gfn~GfN~aEAvNFA~~~Wl~~g~~a~~c~ 329 (381)
T 2ox0_A 279 FDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCS 329 (381)
T ss_dssp CEEEEECTTCEEEECTTCEEEEEECSSEEEEEEEECCTTHHHHHHHCCCCC
T ss_pred eEEEEecCCCEEEECCCcEEEeecCcccHHHHhccCcHHHHHHhHhhhhcc
Confidence 999999999999999999999999999999999999999999999987654
No 3
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=100.00 E-value=2e-59 Score=425.11 Aligned_cols=174 Identities=25% Similarity=0.461 Sum_probs=143.5
Q ss_pred ChHHHHHHHHhhccCCCCceeEEeecccCCCCCCCCCCCCCCCccccccccCccCCCCCchHHhhcc-ccCc----eeec
Q psy8915 18 SPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNS-LVDR----ISFG 92 (220)
Q Consensus 18 ~~~~iE~~yW~~v~~~~~~v~V~gadl~s~~~Gsgfp~~~~~~y~~~~WNL~nlp~~~~SlL~~l~~-i~G~----lyvG 92 (220)
..++||++|||+|+..+ +.||||+. ||+||.+ .++|||+||| +||++++. |+|| ||+|
T Consensus 164 ~~~~lE~~yW~~~~~~~---p~YgaD~~----GS~F~~~------~~~WNL~~Lp----~lL~~l~~~I~GVntP~LYvG 226 (373)
T 3opt_A 164 RLKFLEEYYWKTLNFTT---PMYGADTP----GSIFPEG------LNVWNVAKLP----NILDHMETKVPGVNDSYLYAG 226 (373)
T ss_dssp HHHHHHHHHHHTTTTSC---CEEEEEEE----CCCSCTT------CCSSCTTSCC------------------CCEEEEE
T ss_pred hHHHHHHHHHHhccCCC---ceEecCCC----CCCcCCC------CCccChhhhh----hHHHHhcccCCCcchhheeec
Confidence 46799999999999875 57899986 9999986 7999999997 58999985 9998 9999
Q ss_pred ---------ccccccceeeeeeCCCC--ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCCcee
Q psy8915 93 ---------KIDFGFEIIEFLLPISP--RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLS 161 (220)
Q Consensus 93 ---------~ED~~l~SinYlH~G~p--WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~ 161 (220)
+||++|+||||+|+|+| ||+||+++++|||++|++.+|++++ +|+++|+|++++++|+.|+++||||+
T Consensus 227 m~~Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~k~~~p~~~~-~c~~fL~h~~~lisP~~L~~~GIpv~ 305 (373)
T 3opt_A 227 LWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDRFKFYKFMQEQFPEEAK-NCPEFLRHKMFLASPKLLQENGIRCN 305 (373)
T ss_dssp CTTCEEEEECCGGGCEEEEEEEEESCEEEEECCGGGHHHHHHHHHHSSHHHHS-SCSSCTTTSCEEECHHHHHTTTCCCE
T ss_pred cccCCcceeecCCcceeEEEeecCCCeEEEEeCHHHHHHHHHHHHHhChhhhh-hCHHHhhCCcccCCHHHHHhcCCceE
Confidence 89999999999999999 9999999999999999999999998 68889999999999999999999999
Q ss_pred EeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHHH
Q psy8915 162 RVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKI 209 (220)
Q Consensus 162 ~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~~ 209 (220)
+++|+|||||||||+|||+|||+||||+||||||+++||++|++|.+.
T Consensus 306 r~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~a~~C 353 (373)
T 3opt_A 306 EIVHHEGEFMITYPYGYHAGFNYGYNLAESVNFALEEWLPIGKKAGKC 353 (373)
T ss_dssp EEEECTTCEEEECTTCCEEEEESSSEEEEEEEECCC------------
T ss_pred EEEECCCCEEEECCCceEEEEecCccHHHHHccCcHHHHHhhccCccC
Confidence 999999999999999999999999999999999999999999988754
No 4
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.3e-36 Score=268.46 Aligned_cols=137 Identities=11% Similarity=0.090 Sum_probs=119.2
Q ss_pred cccCccCCC-----CCchHHhhc-cccCc----eeec---------ccccccceeeeeeCCCC--ceecCcchHHHHHHH
Q psy8915 66 WNLKVLTNN-----SASILRSLN-SLVDR----ISFG---------KIDFGFEIIEFLLPISP--RYGIPDEHSTAFRST 124 (220)
Q Consensus 66 WNL~nlp~~-----~~SlL~~l~-~i~G~----lyvG---------~ED~~l~SinYlH~G~p--WY~IP~~~~~kfe~~ 124 (220)
.+|+.||.. .+|||++++ .|+|| ||+| +||++|+||||+|.|++ ||+||++++.+||++
T Consensus 172 ~el~kLP~~lr~~~~gslL~~~~~~I~Gvn~pqLYig~~gS~t~~H~Ed~~l~SiNynhgp~~~~Wy~VP~e~~~~~e~l 251 (332)
T 2xxz_A 172 QELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAF 251 (332)
T ss_dssp HHHTTSCGGGCTTTTCCCSEETTEECCCTTSEEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHH
T ss_pred HHHhhCcHhhcccCccchhhhcCCcCCCcChhheEeecCcccccceecCCcceeEEeecCCCceEEEEECHHHHHHHHHH
Confidence 348888864 799999998 49999 9999 89999999999999999 999999999999999
Q ss_pred HHhhccchhhcCCCccccccccccCchhhhhcCCceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHH
Q psy8915 125 MMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCE 204 (220)
Q Consensus 125 ~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~ 204 (220)
+++.-+++ .+...+++|+.|+++||||+|++|+|||||+|||+|||+|||+||||+||+|||+++|+.+ .
T Consensus 252 ~~k~~~d~---------~~~~~~~~p~~L~~~gIPvyr~~QkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~q~-~ 321 (332)
T 2xxz_A 252 CDRHGVDY---------LTGSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQY-Q 321 (332)
T ss_dssp HHHTTCCT---------TTSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEESCTTGGG-G
T ss_pred HHhcCCch---------hhceecCCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecceeeEEEEEeCCCcHHHH-H
Confidence 99865433 3445689999999999999999999999999999999999999999999999999999987 4
Q ss_pred HHHHHHhh
Q psy8915 205 RVFKIYKT 212 (220)
Q Consensus 205 ~~~~~y~~ 212 (220)
.|+++|+-
T Consensus 322 ~a~erye~ 329 (332)
T 2xxz_A 322 LALERYEW 329 (332)
T ss_dssp GC------
T ss_pred HHHHHHHh
Confidence 88888864
No 5
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=100.00 E-value=3.6e-35 Score=277.08 Aligned_cols=142 Identities=11% Similarity=0.082 Sum_probs=128.1
Q ss_pred ccccccccCccCC-----CCCchHHhhc-cccCc----eeec---------ccccccceeeeeeCCCC--ceecCcchHH
Q psy8915 61 FAKHPWNLKVLTN-----NSASILRSLN-SLVDR----ISFG---------KIDFGFEIIEFLLPISP--RYGIPDEHST 119 (220)
Q Consensus 61 y~~~~WNL~nlp~-----~~~SlL~~l~-~i~G~----lyvG---------~ED~~l~SinYlH~G~p--WY~IP~~~~~ 119 (220)
+..+.|||++||. ..+|||++++ .|+|| ||+| +||++|+||||+|.|++ ||+||.++++
T Consensus 226 w~~ql~el~kLP~~lr~~~~gslL~~~~~~I~Gvn~pqLYig~~gS~t~~H~E~~~l~SiNynhggg~~~Wy~VP~e~~~ 305 (531)
T 3avr_A 226 WKLQLHELTKLPAFVRVVSAGNLLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWG 305 (531)
T ss_dssp THHHHHHGGGSCGGGCSSCTTCGGGGSCSCCBTTSSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHH
T ss_pred hHHHHHHHHhCCHHHcccCccchhhhcCCCCCCcChhheEeecCcccccceecCCcceeeEeecCCCCeEEEEeCHHHHH
Confidence 4456789999997 5899999998 59998 9999 89999999999999999 9999999999
Q ss_pred HHHHHHHhhccchhhcCCCccccccccccCchhhhhcCCceeEeeeCCCcEEEEccCcceeecccCccceeecccCCccc
Q psy8915 120 AFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSW 199 (220)
Q Consensus 120 kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~W 199 (220)
+||+++++.-.+ +.+...+.+|+.|+++||||+|++|+|||||+|||+|||+|+|+|||++||+|||+++|
T Consensus 306 k~e~l~~k~~~~---------~~~~~~~~~p~~L~~~gIPvyr~vQkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~ 376 (531)
T 3avr_A 306 VLNDFCEKNNLN---------FLMGSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTA 376 (531)
T ss_dssp HHHHHHHHTTCC---------TTTSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCSSH
T ss_pred HHHHHHHHcCCC---------hhhceeecCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecceeeeeEEEeccCch
Confidence 999999875332 23456778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy8915 200 LSTCERVFKIYKT 212 (220)
Q Consensus 200 l~~g~~~~~~y~~ 212 (220)
++++. |+++|+.
T Consensus 377 ~q~~~-A~e~y~~ 388 (531)
T 3avr_A 377 CQYKL-AVERYEW 388 (531)
T ss_dssp HHHHH-HHHHHHH
T ss_pred HHHHH-HHHHHHH
Confidence 99985 8888854
No 6
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=100.00 E-value=1.6e-33 Score=262.86 Aligned_cols=138 Identities=10% Similarity=0.093 Sum_probs=120.8
Q ss_pred cccCccCC-----CCCchHHhhc-cccCc----eeec---------ccccccceeeeeeCCCC--ceecCcchHHHHHHH
Q psy8915 66 WNLKVLTN-----NSASILRSLN-SLVDR----ISFG---------KIDFGFEIIEFLLPISP--RYGIPDEHSTAFRST 124 (220)
Q Consensus 66 WNL~nlp~-----~~~SlL~~l~-~i~G~----lyvG---------~ED~~l~SinYlH~G~p--WY~IP~~~~~kfe~~ 124 (220)
.+|+.||. ..+|||++++ .|+|+ ||+| +||++|+||||+|.|++ ||+||++++++||++
T Consensus 206 ~eL~kLP~flr~~~~gslLs~l~~~I~GVNtpqLYigm~gS~t~wH~Ed~~l~SINynhggg~c~WY~VP~e~~~k~e~l 285 (510)
T 4ask_A 206 QELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAF 285 (510)
T ss_dssp HHGGGSCGGGSSSCTTBGGGGSSSCCTTTTSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHH
T ss_pred HHHhhCcHHhCcCCCCchhhhCCCcCCCcChhheEEccccccccceecCCcceeEEEeecCCceeEEEECHHHHHHHHHH
Confidence 34677776 4589999998 49998 9999 89999999999999999 999999999999999
Q ss_pred HHhhccchhhcCCCccccccccccCchhhhhcCCceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccH--HH
Q psy8915 125 MMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWL--ST 202 (220)
Q Consensus 125 ~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl--~~ 202 (220)
+++.-++ ++ +...+.+|+.|+++||||+|++|+|||||||||++||+|+|+||++++|+|||+++|. ..
T Consensus 286 ~~k~~~d--------~l-~~~~~pspe~L~kagIPvyr~iQkPGdfVit~PgtyH~Vqs~Gf~~niaWNvap~t~~qlql 356 (510)
T 4ask_A 286 CDRHGVD--------YL-TGSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQL 356 (510)
T ss_dssp HHHTTCC--------TT-TSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECBSSHHHHHH
T ss_pred HHHhCcc--------hh-hccccCCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecCeeeeeEEEecCCCHHHHHH
Confidence 9875443 23 3456789999999999999999999999999999999999999999999999999875 45
Q ss_pred HHHHHHHHhh
Q psy8915 203 CERVFKIYKT 212 (220)
Q Consensus 203 g~~~~~~y~~ 212 (220)
+.++.++++.
T Consensus 357 A~e~y~~n~~ 366 (510)
T 4ask_A 357 ALERYEWNEV 366 (510)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6667777755
No 7
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=97.92 E-value=1.5e-05 Score=72.59 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=81.4
Q ss_pred ceecCcchHHHHHHHHHhhccchhhcC--CCccccccccccCchh----hhhcCCceeEeeeCCCcEEEEccCcceeecc
Q psy8915 110 RYGIPDEHSTAFRSTMMSLFPHYCRSD--KTIWLSSDVAMIPPSL----LTEKGVSLSRVVQEPGQFILVFPSAFTSSIA 183 (220)
Q Consensus 110 WY~IP~~~~~kfe~~~~~~~p~~~~~~--~~~~l~h~~~~i~P~~----L~~~gI~v~~~~Q~pGefvvtfP~aYh~gfn 183 (220)
|-+..+.+++|+.+++++...+..... ...-++.+...++... ..+.||..+.++|++||.|+.-+|++|.+-|
T Consensus 236 W~Ifr~~D~~klr~~L~~~~~e~~~~~~~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~N 315 (392)
T 2ypd_A 236 WHIYAGKDVDKIREFLQKISKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQN 315 (392)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHC------CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEE
T ss_pred eeeeCHhhHHHHHHHHHHHHHhhCCCccCCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhc
Confidence 999999999999999999776532110 0112344566777732 3457999999999999999999999999999
Q ss_pred cCccceeecccCCcccHHHHHHHHHHHhh
Q psy8915 184 TGYLVAESVYFARPSWLSTCERVFKIYKT 212 (220)
Q Consensus 184 ~G~n~aEavnFa~~~Wl~~g~~~~~~y~~ 212 (220)
..-++.-|.||..|.-+....+-.+.+|.
T Consensus 316 l~~~i~va~df~spe~~~~c~~lt~E~R~ 344 (392)
T 2ypd_A 316 FHSCIQVTEDFVSPEHLVESFHLTQELRL 344 (392)
T ss_dssp SSEEEEEEEEECCGGGHHHHHHHHHHC--
T ss_pred ccchhhHhhhhcChhhHHHHHHHHHHHhh
Confidence 99999999999999999888777777765
No 8
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=96.10 E-value=0.019 Score=53.35 Aligned_cols=104 Identities=8% Similarity=-0.006 Sum_probs=71.2
Q ss_pred eeec---------ccccccceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCC
Q psy8915 89 ISFG---------KIDFGFEIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGV 158 (220)
Q Consensus 89 lyvG---------~ED~~l~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI 158 (220)
+++| .+-....+.+.+..|.. |+.+||.... + ...++....... .+.++ +. ...
T Consensus 235 ~~mG~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~n-l-~~~~~~~~s~~~--~~~~~--------~~----~~~ 298 (447)
T 3kv4_A 235 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNAN-L-TLFECWSSSSNQ--NEMFF--------GD----QVD 298 (447)
T ss_dssp EEEECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHH-H-HHHHHHHTCSSG--GGSCG--------GG----GSS
T ss_pred EEEeCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCccc-c-cchhhcccCcch--hhhhc--------cc----ccc
Confidence 8888 33333455677788999 9999999754 1 111111111000 01111 11 124
Q ss_pred ceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHH
Q psy8915 159 SLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFK 208 (220)
Q Consensus 159 ~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~ 208 (220)
..++++|+|||-++.-.|-+|+++|..-+++-.-||.+..-|+.-.+..+
T Consensus 299 ~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~ 348 (447)
T 3kv4_A 299 KCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYE 348 (447)
T ss_dssp CCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHH
T ss_pred ceEEEEECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHH
Confidence 67889999999999999999999999999999999999998887665544
No 9
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=95.98 E-value=0.018 Score=52.28 Aligned_cols=104 Identities=8% Similarity=-0.023 Sum_probs=71.0
Q ss_pred eeec---------ccccccceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCC
Q psy8915 89 ISFG---------KIDFGFEIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGV 158 (220)
Q Consensus 89 lyvG---------~ED~~l~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI 158 (220)
+++| .+-....+-+.+..|.. |+.+||..... . +.++...... +.+.++ +. ...
T Consensus 151 l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl-~-~y~~~~~s~~--~~e~~~--------~~----~~~ 214 (371)
T 3k3o_A 151 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANL-T-LFECWSSSSN--QNEMFF--------GD----QVD 214 (371)
T ss_dssp EEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHH-H-HHHHHHTSTT--GGGSCG--------GG----TSS
T ss_pred EEEcCCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCcccc-c-cccccccCCc--cchhhc--------cc----ccC
Confidence 8888 33333445677889999 99999988642 1 1111111000 001111 11 124
Q ss_pred ceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHH
Q psy8915 159 SLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFK 208 (220)
Q Consensus 159 ~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~ 208 (220)
..++++|+|||.++.-.|-+|+++|..-+++-.-||....=|+.-.++.+
T Consensus 215 ~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~ 264 (371)
T 3k3o_A 215 KCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYE 264 (371)
T ss_dssp CCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred ceEEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHH
Confidence 67899999999999999999999999999999999999988876655444
No 10
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=95.76 E-value=0.021 Score=52.10 Aligned_cols=105 Identities=9% Similarity=-0.017 Sum_probs=72.2
Q ss_pred eeec---------ccccccceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCC
Q psy8915 89 ISFG---------KIDFGFEIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGV 158 (220)
Q Consensus 89 lyvG---------~ED~~l~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI 158 (220)
+++| .+-....+.+.+..|.. ||.+||..... . +.++...... +.+.|+ +.. ..
T Consensus 178 ~~mGp~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl-~-~y~~~~~s~~--~~e~~~--------~~~----~~ 241 (392)
T 3pua_A 178 CLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANI-S-LYERWRSASN--HSEMFF--------ADQ----VD 241 (392)
T ss_dssp EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHH-H-HHHHHHHSTT--GGGSCG--------GGG----SS
T ss_pred EEEeCCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccc-c-chhhcccCcc--hhhhhh--------ccc----cc
Confidence 8888 23333456677889999 99999987642 1 1111110000 001121 111 23
Q ss_pred ceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHHH
Q psy8915 159 SLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKI 209 (220)
Q Consensus 159 ~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~~ 209 (220)
..++++|+|||-++.-.|-+|+++|..-+++-.-||.+..=|+...++.+.
T Consensus 242 ~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~ 292 (392)
T 3pua_A 242 KCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEV 292 (392)
T ss_dssp CCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHH
T ss_pred ceEEEEECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHHH
Confidence 568999999999999999999999999999999999999988877666553
No 11
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=95.65 E-value=0.026 Score=46.00 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=54.0
Q ss_pred ceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhh---hhcCCceeEeeeCCCcEEEEc
Q psy8915 99 EIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLL---TEKGVSLSRVVQEPGQFILVF 174 (220)
Q Consensus 99 ~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L---~~~gI~v~~~~Q~pGefvvtf 174 (220)
..++.+-.|.. |..+||++...+ +|........ ....-.-.|+.- +-...+...++|+|||.++.-
T Consensus 145 ~n~~~qv~G~K~w~L~pP~~~~~l-------~~~~~~~~~~---~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~LyiP 214 (235)
T 4gjz_A 145 QNFLVQVMGRKYIRLYSPQESGAL-------YPHDTHLLHN---TSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIP 214 (235)
T ss_dssp EEEEEEEESCEEEEEECGGGGGGS-------CBCSSTTTTT---BBSSCTTSCCTTTCGGGGGCCCEEEEECTTCEEEEC
T ss_pred cceEEEEeeeEeeEEcCccccccc-------ccCcccccCc---cccccccCcchhhCccccCCCcEEEEECCCCEEEeC
Confidence 34555668999 999999986532 3321110000 000111112110 113467889999999999999
Q ss_pred cCcceeecccCccceeeccc
Q psy8915 175 PSAFTSSIATGYLVAESVYF 194 (220)
Q Consensus 175 P~aYh~gfn~G~n~aEavnF 194 (220)
++-+|.+.|.+.+++-.++|
T Consensus 215 ~gW~H~V~~l~~sisvn~w~ 234 (235)
T 4gjz_A 215 VKYWHYVRALDLSFSVSFWW 234 (235)
T ss_dssp TTCEEEEEESSSEEEEEEEE
T ss_pred CCCcEEEEECCCEEEEEEec
Confidence 99999999999887665554
No 12
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=95.56 E-value=0.034 Score=50.86 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=71.6
Q ss_pred eeec---------ccccccceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCC
Q psy8915 89 ISFG---------KIDFGFEIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGV 158 (220)
Q Consensus 89 lyvG---------~ED~~l~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI 158 (220)
+++| .+-....+.+.+..|.. |+.+||..... .+.++...... +.+.++ +. ...
T Consensus 179 l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl--~ly~~~~~s~~--~~e~~~--------~~----~~~ 242 (397)
T 3kv9_A 179 CLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENL--ARYESWSSSVT--QSEVFF--------GD----KVD 242 (397)
T ss_dssp EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHH--HHHHHHHTSGG--GGGSCG--------GG----GSS
T ss_pred EEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCccccc--ccccccccCCC--cchhhh--------cc----ccC
Confidence 7888 33333455677889999 99999988651 11111110000 001111 11 123
Q ss_pred ceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHHH
Q psy8915 159 SLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKI 209 (220)
Q Consensus 159 ~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~~ 209 (220)
..++++|+|||-+++-.+-+|+.+|..-+++-.-||....=|+.-.++.+.
T Consensus 243 ~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~~ 293 (397)
T 3kv9_A 243 KCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEM 293 (397)
T ss_dssp CCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHH
T ss_pred ceEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHHH
Confidence 678899999999999999999999999999999999999988876665443
No 13
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=95.49 E-value=0.072 Score=47.51 Aligned_cols=109 Identities=12% Similarity=0.100 Sum_probs=69.6
Q ss_pred eeec---------ccccccceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcC-CCccccccccccCchhhhh--
Q psy8915 89 ISFG---------KIDFGFEIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSD-KTIWLSSDVAMIPPSLLTE-- 155 (220)
Q Consensus 89 lyvG---------~ED~~l~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~-~~~~l~h~~~~i~P~~L~~-- 155 (220)
+++| .+.....+++.+-.|.. |+.+||.....+-. .+...... .+.-+.- ....-|..-..
T Consensus 176 ~~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~-----~~~~~~~~~~~~~~~w-~~~~~P~~~~~~~ 249 (336)
T 3k2o_A 176 FVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIK-----VTRDEGGNQQDEAITW-FNVIYPRTQLPTW 249 (336)
T ss_dssp EEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHC-----CCHHHHGGGTTCHHHH-HHHTGGGGGSTTS
T ss_pred EEECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhccc-----CcccccCCCccchhhh-hhhhCcchhhhcc
Confidence 6787 23333446777889999 99999997543210 11110000 0000000 00012221111
Q ss_pred -cCCceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHH
Q psy8915 156 -KGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTC 203 (220)
Q Consensus 156 -~gI~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g 203 (220)
...+.++++|+|||.+++-++-+|.+.|.+-+++-+.||..+..|+.-
T Consensus 250 p~~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~ 298 (336)
T 3k2o_A 250 PPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVV 298 (336)
T ss_dssp CGGGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHH
T ss_pred cccCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHH
Confidence 246788999999999999999999999999999999999999888653
No 14
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.29 E-value=0.041 Score=51.57 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=70.1
Q ss_pred eeec---------ccccccceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCC
Q psy8915 89 ISFG---------KIDFGFEIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGV 158 (220)
Q Consensus 89 lyvG---------~ED~~l~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI 158 (220)
+++| .+-....+.+.+-.|.. |+.+||...... +.++ ... ...+ .... +.....
T Consensus 270 ~~mG~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~--~y~~----~~~-~~~~-----~~~~----~~~~~~ 333 (488)
T 3kv5_D 270 CLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLA--RYES----WSS-SVTQ-----SEVF----FGDKVD 333 (488)
T ss_dssp EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHH--HHHH----HHT-CSSG-----GGSC----GGGSSS
T ss_pred EEEcCCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccc--cccc----ccc-CCcc-----chhh----hccccc
Confidence 7787 33333445567778999 999999875421 1111 111 0100 0001 111224
Q ss_pred ceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHH
Q psy8915 159 SLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFK 208 (220)
Q Consensus 159 ~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~ 208 (220)
..++++|+|||.++.-.+-+|+++|..-+++-.-||....=|+.-.++.+
T Consensus 334 ~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~ 383 (488)
T 3kv5_D 334 KCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 383 (488)
T ss_dssp CCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred ceEEEeeCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHH
Confidence 67899999999999999999999999999999999999988877665543
No 15
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=94.87 E-value=0.11 Score=48.16 Aligned_cols=94 Identities=7% Similarity=-0.008 Sum_probs=63.7
Q ss_pred cceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCCceeEeeeCCCcEEEEccC
Q psy8915 98 FEIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPS 176 (220)
Q Consensus 98 l~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGefvvtfP~ 176 (220)
..+.+.+-.|.. |+.+||...... +.... . ....+.+.+ -|..+ -..++++++|||.++.-.|
T Consensus 218 ts~w~avi~GrK~w~L~PP~~~~~~--~y~~~-~-~s~~q~~~~--------~p~~~----~~~~~v~l~pGE~LfIPsG 281 (451)
T 2yu1_A 218 TSVWYHIHQGGKVFWLIPPTAHNLE--LYENW-L-LSGSQGDIF--------LGDRV----SDCQRIELKQGYTFVIPSG 281 (451)
T ss_dssp CEEEEEEEESCEEEEEECCCHHHHH--HHHHH-H-HTTCCSSSC--------HHHHS----SCCEEEEECTTCEEEECTT
T ss_pred cchhhheecceEEEEEeCCCccccc--ccccc-c-ccccchhhh--------hcccc----ccceEEEECCCcEEEeCCC
Confidence 455666779999 999999986521 11110 0 000011111 23321 2467899999999999999
Q ss_pred cceeecccCccceeecccCCcccHHHHHHHH
Q psy8915 177 AFTSSIATGYLVAESVYFARPSWLSTCERVF 207 (220)
Q Consensus 177 aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~ 207 (220)
=+|++.|..-+++-..||....=++.-.++.
T Consensus 282 WwH~V~nledsIait~NF~~~~nl~~~l~~~ 312 (451)
T 2yu1_A 282 WIHAVYTPTDTLVFGGNFLHSFNIPMQLKIY 312 (451)
T ss_dssp CEEEEECSSCEEEEEEEECCSSSHHHHHHHH
T ss_pred ceEEEecCCCeEEEeeeeCCcccHHHHHHHH
Confidence 9999999999999999999987777554443
No 16
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=94.52 E-value=0.13 Score=48.61 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=62.1
Q ss_pred cceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCCceeEeeeCCCcEEEEccC
Q psy8915 98 FEIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPS 176 (220)
Q Consensus 98 l~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGefvvtfP~ 176 (220)
....+.+-.|.. ||.+||..... . +.+..... . +...|+. ..+. ..+++++|+|||.++.-+|
T Consensus 318 ts~w~~v~~GrK~w~L~PPt~~nl-~-~y~~w~~s--~-~~~~wfg--------d~l~---~~~~~v~l~pGEtlfIPsG 381 (528)
T 3pur_A 318 SSVYYHILKGEKIFYIAAPTEQNF-A-AYQAHETS--P-DTTTWFG--------DIAN---GAVKRVVIKEGQTLLIPAG 381 (528)
T ss_dssp CEEEEEEEEEEEEEEEECCCHHHH-H-HHHHHHHS--S-CCSCCGG--------GGTT---TCCEEEEEETTCEEEECTT
T ss_pred CceeEEEecceEEEEEeCCCccch-h-hhhhhccC--C-chhhhhc--------cccc---ccEEEEEECCCCEEEecCC
Confidence 344555667888 99999986542 1 11111100 0 1111222 1121 2467899999999999999
Q ss_pred cceeecccCccceeecccCCcccHHHHHHH
Q psy8915 177 AFTSSIATGYLVAESVYFARPSWLSTCERV 206 (220)
Q Consensus 177 aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~ 206 (220)
-+|+++|.--+++-.-||.+..=|+...++
T Consensus 382 W~HaV~tleDSIaiggNFl~~~nl~~qlri 411 (528)
T 3pur_A 382 WIHAVLTPVDSLVFGGNFLHLGNLEMQMRV 411 (528)
T ss_dssp CEEEEEEEEEEEEEEEEECCGGGHHHHHHH
T ss_pred ceEEEecCCCeEEEcCcccchhhHHHHHHH
Confidence 999999999999999999998877765543
No 17
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=90.22 E-value=0.91 Score=40.22 Aligned_cols=87 Identities=13% Similarity=0.022 Sum_probs=52.7
Q ss_pred ceeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchh---hhhcCCceeEeeeCCCcEEEEc
Q psy8915 99 EIIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSL---LTEKGVSLSRVVQEPGQFILVF 174 (220)
Q Consensus 99 ~SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~---L~~~gI~v~~~~Q~pGefvvtf 174 (220)
..++-+-.|.+ |..+||.+...+ +|......+.. ...+-.-.|+. -+-...+...++++|||.++.-
T Consensus 204 ~n~~~qv~G~K~~~L~pP~~~~~l-------y~~~~~~~~~~--~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~LyiP 274 (349)
T 3d8c_A 204 QNFFAQIKGYKRCILFPPDQFECL-------YPYPVHHPCDR--QSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIP 274 (349)
T ss_dssp EEEEEEEESCEEEEEECGGGHHHH-------CBBCTTSTTBT--BBCSCTTSCCTTTCGGGGGCCEEEEEECTTCEEEEC
T ss_pred hcEEEEEeceEEEEEeCcchhhhh-------ccccccCCCCC--cccccCCCcchhhCcccccCCcEEEEECCCCEEEEC
Confidence 35555668999 999999987543 33211100000 00000111211 0112357899999999999999
Q ss_pred cCcceeecccC-ccceeeccc
Q psy8915 175 PSAFTSSIATG-YLVAESVYF 194 (220)
Q Consensus 175 P~aYh~gfn~G-~n~aEavnF 194 (220)
++-+|.+.|.+ -.++-||||
T Consensus 275 ~gWwH~V~~l~d~~~sisvn~ 295 (349)
T 3d8c_A 275 MYWWHHIESLLNGGITITVNF 295 (349)
T ss_dssp TTCEEEEEECTTSCCEEEEEE
T ss_pred CCCcEEEEEcCCCCcEEEEEE
Confidence 99999999986 345556665
No 18
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=82.87 E-value=1.1 Score=39.42 Aligned_cols=87 Identities=8% Similarity=0.086 Sum_probs=55.2
Q ss_pred eeeeeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCCceeEeeeCCCcEEEEccCcc
Q psy8915 100 IIEFLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAF 178 (220)
Q Consensus 100 SinYlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGefvvtfP~aY 178 (220)
.++-+-.|.+ |...||.+...+ +|.-..+ ...-+.....-.-|. ++ ..+...++++|||.++.-++-+
T Consensus 189 n~~~qv~G~K~w~L~pP~~~~~l-------y~~~~~~-~~~d~~~~d~~~~p~-~~--~~~~~~~~L~pGD~LyiP~gWw 257 (338)
T 3al5_A 189 NLLIQVTGKKRVVLFSPRDAQYL-------YLKGTKS-EVLNIDNPDLAKYPL-FS--KARRYECSLEAGDVLFIPALWF 257 (338)
T ss_dssp EEEEECSSCEEEEEECGGGGGGG-------TEETTEE-SCCCSSSCCTTTCTT-GG--GCCEEEEEECTTCEEEECTTCE
T ss_pred cEEEEEEEEEEEEEECccccccc-------ccCCCCc-ccccCCCcchhhCcc-cc--cCCCEEEEECCCCEEEECCCCe
Confidence 4445568999 999999886432 2211000 000000001111122 22 2468899999999999999999
Q ss_pred eeecccCccceeecccCCc
Q psy8915 179 TSSIATGYLVAESVYFARP 197 (220)
Q Consensus 179 h~gfn~G~n~aEavnFa~~ 197 (220)
|.+.|.+.+++-+++|...
T Consensus 258 H~v~~l~~sisvn~~~~~~ 276 (338)
T 3al5_A 258 HNVISEEFGVGVNIFWKHL 276 (338)
T ss_dssp EEEEESSCEEEEEEEECSS
T ss_pred EEEeeCCCEEEEEEEecCC
Confidence 9999999999888877553
No 19
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=64.01 E-value=12 Score=32.95 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=41.4
Q ss_pred CceeEeeeCCCcEEEEccCcceeecccC--ccceeecccCCcccHHHHHHHHHH
Q psy8915 158 VSLSRVVQEPGQFILVFPSAFTSSIATG--YLVAESVYFARPSWLSTCERVFKI 209 (220)
Q Consensus 158 I~v~~~~Q~pGefvvtfP~aYh~gfn~G--~n~aEavnFa~~~Wl~~g~~~~~~ 209 (220)
.+...++.+||+.+..-++.+|.+.+.| -+++-+++ .++|.+....+++.
T Consensus 215 ~~~~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~--~~~~~dll~~~l~~ 266 (342)
T 1vrb_A 215 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFG--QPAWLDLMLAALRK 266 (342)
T ss_dssp CSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEEC--CCBHHHHHHHHHHH
T ss_pred CCceEEEECCCcEEEeCCCccEEEEECCCCceEEEEEC--CCcHHHHHHHHHHH
Confidence 6778999999999999999999999993 56666666 78999877665544
No 20
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=30.42 E-value=86 Score=29.13 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=56.4
Q ss_pred eeeCCCC-ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCCceeEeeeCCCcEEEEccCcceee
Q psy8915 103 FLLPISP-RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSS 181 (220)
Q Consensus 103 YlH~G~p-WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGefvvtfP~aYh~g 181 (220)
..-.|.+ |...+|.+... .+|.... . -+.+. +.+-++..++-+||+.+..-|+..|.+
T Consensus 190 lQv~G~KrWrL~~P~~~~~-------~lp~~~~--~---------~~~~~---~~~~p~~e~~L~pGDvLYiP~g~~H~~ 248 (489)
T 4diq_A 190 LQLEGRKLWRVYRPRAPTE-------ELALTSS--P---------NFSQD---DLGEPVLQTVLEPGDLLYFPRGFIHQA 248 (489)
T ss_dssp EEEEECEEEEEECCSSGGG-------TTCSSCC--C---------CCCGG---GCCCCSEEEEECTTCEEEECTTCEEEE
T ss_pred EEEeeEEEEEEeCCCCccc-------cCCCccc--c---------cCCcc---cccCcceEEEECCCCEEEECCCCceEE
Confidence 3458999 99999887542 2332110 0 11121 235688999999999999999999999
Q ss_pred ccc--CccceeecccC-CcccHHHHHH
Q psy8915 182 IAT--GYLVAESVYFA-RPSWLSTCER 205 (220)
Q Consensus 182 fn~--G~n~aEavnFa-~~~Wl~~g~~ 205 (220)
.+. ++++.-++.+. +.+|.+.-..
T Consensus 249 ~s~~~~~SlhlTi~~~~~~tw~dll~~ 275 (489)
T 4diq_A 249 ECQDGVHSLHLTLSTYQRNTWGDFLEA 275 (489)
T ss_dssp EBCSSCCEEEEEEEECTTCBHHHHHHH
T ss_pred EecCCCceEEEeecccCcccHHHHHHH
Confidence 998 46777777764 4689765543
No 21
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=24.89 E-value=77 Score=21.56 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=25.2
Q ss_pred cCC-CCCCCCCCCCChHHHHHHHHhhccCCC
Q psy8915 5 FKS-DNPNDPGSNPSPAEVESEFWNHVTNRM 34 (220)
Q Consensus 5 fk~-~~~~~~~~~~~~~~iE~~yW~~v~~~~ 34 (220)
|++ ..|..|+.-.+..+=|+..|++|+..+
T Consensus 14 g~Rp~gFVDPPp~~Wna~KD~~LW~IIS~~d 44 (69)
T 4hpq_A 14 GRARNGFVDPLKFYWDLERDRSLWSSVXXXX 44 (69)
T ss_dssp SCCCSCCCCCCCCCCHHHHHHHHHHHCCHHH
T ss_pred CCCCCCCCCCCCCccChHHHHHHHHHHHhhh
Confidence 555 568888888999999999999998654
No 22
>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5
Probab=24.71 E-value=1.2e+02 Score=20.56 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=18.0
Q ss_pred eecCcchHHHHHHHHHhhccch
Q psy8915 111 YGIPDEHSTAFRSTMMSLFPHY 132 (220)
Q Consensus 111 Y~IP~~~~~kfe~~~~~~~p~~ 132 (220)
+-|++...+.|++.+++..+..
T Consensus 8 ~~v~~g~~~~f~~~~~~~~~~~ 29 (106)
T 1iuj_A 8 IPVRPEYAEQFEEAFRQRARLV 29 (106)
T ss_dssp ECBCGGGHHHHHHHHHHHGGGG
T ss_pred EEeCcchHHHHHHHHHHHHHHh
Confidence 4578899999999999987654
No 23
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=23.88 E-value=1.3e+02 Score=19.78 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=28.7
Q ss_pred eeeCCCC-ceecCcchHHHHHHHHHhhcc----ch-hhcCCCccccccccccCch-------hhhhcCCceeEeee
Q psy8915 103 FLLPISP-RYGIPDEHSTAFRSTMMSLFP----HY-CRSDKTIWLSSDVAMIPPS-------LLTEKGVSLSRVVQ 165 (220)
Q Consensus 103 YlH~G~p-WY~IP~~~~~kfe~~~~~~~p----~~-~~~~~~~~l~h~~~~i~P~-------~L~~~gI~v~~~~Q 165 (220)
.+|-|+. -|-|.+...+..+. ++++.- ++ +.+.+...=..-.+||+|. .|.++||++..++.
T Consensus 3 ~~~~~~~~~~rV~~~~~~q~~~-L~~L~~~~~~~ldfW~~~~~~~~~vdI~V~p~~~~~f~~~L~~~~I~y~Vlie 77 (78)
T 2gjf_A 3 HHHHGSKTIFVIVPTNEEQVAF-LEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAKGIPFTVYVE 77 (78)
T ss_dssp ----CCCEEEEECCCSHHHHHH-HHHHHTCTTTCCEESSCTTSTTCCEEEEECTTSHHHHHHHHHHHTCCEEEEEE
T ss_pred cccCCCeeEEEEEcCCHHHHHH-HHHHHhcCCCCEEeeCCCCCCCCeEEEEECHHHHHHHHHHHHHCCCcEEEEeC
Confidence 3578988 66666655554432 222211 11 1111110001235689995 35667998877654
No 24
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=23.71 E-value=62 Score=21.96 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=26.6
Q ss_pred EeeeCCCcEEEEccCcceeecccCccceeecccCC
Q psy8915 162 RVVQEPGQFILVFPSAFTSSIATGYLVAESVYFAR 196 (220)
Q Consensus 162 ~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~ 196 (220)
+..-.||++++.-|+.-|+..|.|-.-+..+.+..
T Consensus 63 ~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~ 97 (113)
T 2gu9_A 63 TQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYH 97 (113)
T ss_dssp EEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEE
T ss_pred EEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEEC
Confidence 56678999999999999999998755444444433
No 25
>3hx9_A Protein RV3592; DI-heme, beta barrel, dimer, oxidoreductase; HET: HEM; 1.75A {Mycobacterium tuberculosis}
Probab=23.61 E-value=1.2e+02 Score=22.28 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=30.9
Q ss_pred eecCcchHHHHHHHHHhhccchhhcCCCccccccccccCchhhhhcCCceeEeeeCCCcEEEE
Q psy8915 111 YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILV 173 (220)
Q Consensus 111 Y~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P~~L~~~gI~v~~~~Q~pGefvvt 173 (220)
+-|++...+.|++.+++..+.+. +.+.++... +.+-...|++|++.
T Consensus 9 ~~V~pg~~~efe~~~~~~~~~~~--~~pGfl~~~---------------L~r~~~~p~~yv~~ 54 (124)
T 3hx9_A 9 IEVPAGAGPELEKRFAHRAHAVE--NSPGFLGFQ---------------LLRPVKGEERYFVV 54 (124)
T ss_dssp ECCCTTCHHHHHHHHHHTTTTTT--TCTTEEEEE---------------EEEEEESCCSEEEE
T ss_pred EEECCCCHHHHHHHHHHHHHHHh--cCCCceEEE---------------EEeCCCCCCEEEEE
Confidence 45889999999999999876543 344555432 23444567777765
No 26
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=23.44 E-value=67 Score=22.20 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.9
Q ss_pred EeeeCCCcEEEEccCcceeecccC
Q psy8915 162 RVVQEPGQFILVFPSAFTSSIATG 185 (220)
Q Consensus 162 ~~~Q~pGefvvtfP~aYh~gfn~G 185 (220)
...-.||+.++.-|+.-|+..|.+
T Consensus 73 ~~~l~~Gd~~~ip~~~~H~~~~~~ 96 (116)
T 2pfw_A 73 IKVLTAGDSFFVPPHVDHGAVCPT 96 (116)
T ss_dssp EEEECTTCEEEECTTCCEEEEESS
T ss_pred EEEeCCCCEEEECcCCceeeEeCC
Confidence 567889999999999999999988
No 27
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=21.76 E-value=66 Score=25.69 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.9
Q ss_pred eeEeeeCCCcEEEEccCcceeecc
Q psy8915 160 LSRVVQEPGQFILVFPSAFTSSIA 183 (220)
Q Consensus 160 v~~~~Q~pGefvvtfP~aYh~gfn 183 (220)
-..++..|||.+..-|+++|+-.+
T Consensus 118 ~~~i~L~pGesvtIppg~~H~f~a 141 (175)
T 2y0o_A 118 WHEIELEPGGQYTIPPNTKHWFQA 141 (175)
T ss_dssp CEEEEECTTCEEEECTTCCEEEEE
T ss_pred CcEEEECCCCEEEECCCCcEEEEe
Confidence 467899999999999999999887
Done!