Query psy8916
Match_columns 520
No_of_seqs 256 out of 381
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 22:45:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pjh_A Protein NPL4, nuclear p 99.6 1.5E-16 5E-21 131.8 5.7 74 174-248 5-78 (80)
2 1wf9_A NPL4 family protein; be 99.2 6E-11 2E-15 102.2 8.8 81 174-255 8-99 (107)
3 2kzr_A Ubiquitin thioesterase 98.5 3.2E-07 1.1E-11 75.6 8.0 74 174-250 1-77 (86)
4 1ndd_A NEDD8, protein (ubiquit 97.9 4.1E-05 1.4E-09 59.6 8.3 71 174-249 1-71 (76)
5 3a9j_A Ubiquitin; protein comp 97.8 5.2E-05 1.8E-09 59.0 7.9 71 174-249 1-71 (76)
6 3phx_B Ubiquitin-like protein 97.8 9.6E-05 3.3E-09 58.8 8.6 71 174-249 5-75 (79)
7 2dzi_A Ubiquitin-like protein 97.7 9.8E-05 3.4E-09 58.5 8.1 70 174-248 8-77 (81)
8 1yx5_B Ubiquitin; proteasome, 97.7 9.8E-05 3.3E-09 61.6 8.0 72 174-250 1-72 (98)
9 2bwf_A Ubiquitin-like protein 97.7 0.00014 4.7E-09 57.1 8.5 71 173-249 4-74 (77)
10 3mtn_B UBA80, ubcep1, ubiquiti 97.7 0.00014 4.7E-09 58.0 8.5 72 174-250 4-75 (85)
11 3n3k_B Ubiquitin; hydrolase, p 97.7 0.00011 3.8E-09 58.7 7.4 72 174-250 4-75 (85)
12 3dbh_I NEDD8; cell cycle, acti 97.7 0.00014 4.9E-09 58.5 8.1 72 173-249 12-83 (88)
13 3v6c_B Ubiquitin; structural g 97.6 0.00018 6.1E-09 59.2 8.6 71 173-248 17-87 (91)
14 4fbj_B NEDD8; effector-HOST ta 97.6 0.00012 4.2E-09 60.1 7.6 72 174-250 1-72 (88)
15 3k9o_B Ubiquitin, UBB+1; E2-25 97.6 0.00017 5.8E-09 59.4 7.8 72 174-250 2-73 (96)
16 3m62_B UV excision repair prot 97.6 0.00015 5.3E-09 61.9 7.7 73 174-251 2-74 (106)
17 2hj8_A Interferon-induced 17 k 97.6 0.00017 5.7E-09 59.2 7.5 72 174-250 5-76 (88)
18 1uel_A HHR23B, UV excision rep 97.6 0.00047 1.6E-08 57.4 10.0 72 174-250 1-75 (95)
19 4dwf_A HLA-B-associated transc 97.6 0.00026 8.8E-09 57.8 8.3 73 173-251 5-77 (90)
20 2faz_A Ubiquitin-like containi 97.5 0.00026 8.8E-09 56.0 7.9 71 174-249 3-75 (78)
21 1wh3_A 59 kDa 2'-5'-oligoadeny 97.5 0.00021 7.3E-09 57.7 7.5 72 174-250 8-79 (87)
22 2ojr_A Ubiquitin; lanthide-bin 97.5 0.00043 1.5E-08 59.4 9.8 73 172-249 34-106 (111)
23 1wy8_A NP95-like ring finger p 97.5 0.00041 1.4E-08 56.3 9.1 72 174-250 8-81 (89)
24 2uyz_B Small ubiquitin-related 97.5 0.00018 6.2E-09 57.2 6.7 72 173-249 3-74 (79)
25 2wyq_A HHR23A, UV excision rep 97.5 0.00044 1.5E-08 55.4 8.6 73 173-250 5-80 (85)
26 4hcn_B Polyubiquitin, ubiquiti 97.5 0.00026 8.7E-09 59.3 7.4 72 173-249 22-93 (98)
27 1uh6_A Ubiquitin-like 5; beta- 97.5 0.00023 7.8E-09 61.6 7.1 72 174-250 29-100 (100)
28 1ttn_A DC-UBP, dendritic cell- 97.5 0.00039 1.3E-08 59.2 8.5 73 173-250 23-95 (106)
29 1wx7_A Ubiquilin 3; ubiquitin- 97.5 0.00046 1.6E-08 58.5 8.9 72 173-250 17-88 (106)
30 1sif_A Ubiquitin; hydrophobic 97.4 0.00039 1.3E-08 57.1 7.7 73 172-249 8-80 (88)
31 1wyw_B Ubiquitin-like protein 97.3 0.00048 1.6E-08 57.8 7.5 72 173-249 21-92 (97)
32 1v5o_A 1700011N24RIK protein; 97.3 0.00059 2E-08 57.7 8.1 73 174-250 8-84 (102)
33 1yqb_A Ubiquilin 3; structural 97.3 0.00071 2.4E-08 57.3 8.5 71 174-250 23-93 (100)
34 3vdz_A Ubiquitin-40S ribosomal 97.3 0.00077 2.6E-08 58.0 8.3 89 156-249 17-106 (111)
35 3plu_A Ubiquitin-like modifier 97.3 0.00096 3.3E-08 57.2 8.6 72 173-249 21-92 (93)
36 2kk8_A Uncharacterized protein 97.3 0.00065 2.2E-08 55.8 7.2 71 173-248 10-81 (84)
37 3b08_A Polyubiquitin-C, ubiqui 97.2 0.00075 2.6E-08 59.1 7.8 72 174-250 1-72 (152)
38 3b1l_X E3 ubiquitin-protein li 96.3 4.8E-05 1.6E-09 59.9 0.0 70 174-248 1-70 (76)
39 2kan_A Uncharacterized protein 97.2 0.00089 3.1E-08 56.1 7.7 71 174-250 16-87 (94)
40 4eew_A Large proline-rich prot 97.2 0.0011 3.6E-08 53.9 7.6 70 173-248 17-86 (88)
41 2klc_A Ubiquilin-1; ubiquitin- 97.2 0.0017 5.8E-08 54.9 9.0 72 173-250 25-96 (101)
42 1we6_A Splicing factor, putati 97.1 0.0018 6.3E-08 55.3 8.8 71 174-249 28-102 (111)
43 1j8c_A Ubiquitin-like protein 97.1 0.0016 5.4E-08 57.5 8.3 72 173-250 32-103 (125)
44 1wx8_A Riken cDNA 4931431F19; 97.1 0.0013 4.5E-08 54.3 7.2 71 173-249 17-87 (96)
45 2l7r_A Ubiquitin-like protein 97.0 0.0014 4.9E-08 54.4 7.2 69 174-249 20-88 (93)
46 3m63_B Ubiquitin domain-contai 97.0 0.00088 3E-08 56.9 5.8 70 173-248 28-97 (101)
47 1wia_A Hypothetical ubiquitin- 97.0 0.0034 1.2E-07 51.8 9.2 70 173-250 7-77 (95)
48 1wm3_A Ubiquitin-like protein 97.0 0.0023 7.9E-08 51.0 7.8 70 173-247 1-70 (72)
49 3q3f_A Ribonuclease/ubiquitin 97.0 0.0023 8E-08 60.7 9.0 81 164-249 95-176 (189)
50 3l0w_B Monoubiquitinated proli 96.9 0.0026 8.8E-08 58.8 8.2 72 174-250 1-72 (169)
51 3b08_A Polyubiquitin-C, ubiqui 96.9 0.0032 1.1E-07 55.0 8.3 71 174-249 77-147 (152)
52 2znr_A AMSH-like protease; met 96.8 0.0029 9.8E-08 59.2 7.9 76 422-507 15-93 (178)
53 3rt3_B Ubiquitin-like protein 96.8 0.0041 1.4E-07 55.6 8.6 71 174-249 82-152 (159)
54 3u5c_f 40S ribosomal protein S 96.8 0.00047 1.6E-08 63.3 2.4 71 174-249 1-71 (152)
55 1wxv_A BAG-family molecular ch 96.8 0.0064 2.2E-07 49.9 8.9 71 173-248 7-82 (92)
56 2io0_B Small ubiquitin-related 96.7 0.0043 1.5E-07 52.2 7.9 72 173-249 5-76 (91)
57 3a4r_A Nfatc2-interacting prot 96.7 0.005 1.7E-07 50.1 7.8 70 173-247 7-77 (79)
58 3rt3_B Ubiquitin-like protein 96.7 0.0045 1.5E-07 55.3 7.9 73 174-250 3-76 (159)
59 2io1_B Small ubiquitin-related 96.7 0.0051 1.8E-07 51.9 7.7 72 173-249 7-78 (94)
60 3u30_A Ubiquitin, linear DI-ub 96.7 0.0048 1.6E-07 56.1 8.1 73 173-250 20-92 (172)
61 3rzv_A STAM-binding protein; u 96.6 0.0083 2.8E-07 58.0 10.1 77 420-506 46-125 (211)
62 2kd0_A LRR repeats and ubiquit 96.6 0.0059 2E-07 50.0 7.6 65 179-248 17-81 (85)
63 1v2y_A 3300001G02RIK protein; 96.6 0.0026 9E-08 55.2 5.5 72 174-249 8-94 (105)
64 2kdi_A Ubiquitin, vacuolar pro 96.6 0.0055 1.9E-07 53.0 7.4 71 175-250 11-81 (114)
65 2p8r_A PRP8, PRE-mRNA-splicing 96.5 0.0031 1.1E-07 63.2 6.4 81 417-508 40-121 (273)
66 1wgd_A Homocysteine-responsive 96.4 0.012 4E-07 48.5 8.4 71 174-249 8-84 (93)
67 2og4_A PRE-mRNA-splicing facto 96.4 0.0045 1.6E-07 61.5 6.7 82 417-508 39-122 (254)
68 2d07_B Ubiquitin-like protein 96.3 0.0097 3.3E-07 50.0 7.5 72 173-249 17-88 (93)
69 1v86_A DNA segment, CHR 7, way 96.3 0.0073 2.5E-07 50.5 6.7 69 173-248 17-85 (95)
70 1wju_A NEDD8 ultimate buster-1 96.3 0.012 4.2E-07 50.7 8.2 69 175-248 17-89 (100)
71 1wz0_A Ubiquitin-like protein 96.3 0.011 3.7E-07 51.0 7.9 72 173-249 24-95 (104)
72 3u5e_m 60S ribosomal protein L 96.3 0.00061 2.1E-08 59.9 0.0 71 174-249 1-71 (128)
73 1we7_A SF3A1 protein; structur 96.3 0.011 3.7E-07 50.9 7.8 72 174-250 26-107 (115)
74 3u30_A Ubiquitin, linear DI-ub 96.1 0.013 4.5E-07 53.2 7.7 70 174-248 97-166 (172)
75 3qx1_A FAS-associated factor 1 96.1 0.026 8.8E-07 46.2 8.5 72 175-248 9-81 (84)
76 1x1m_A Ubiquitin-like protein 96.0 0.019 6.5E-07 48.8 7.8 72 174-250 13-99 (107)
77 1v5t_A 8430435I17RIK protein; 96.0 0.011 3.6E-07 48.8 6.0 71 174-248 8-80 (90)
78 1wgg_A Ubiquitin carboxyl-term 96.0 0.013 4.3E-07 49.3 6.5 68 174-248 8-76 (96)
79 2kdb_A Homocysteine-responsive 95.9 0.016 5.4E-07 49.4 6.9 69 174-247 24-98 (99)
80 2dzj_A Synaptic glycoprotein S 95.9 0.016 5.4E-07 48.2 6.7 72 173-248 10-86 (88)
81 4a20_A Ubiquitin-like protein 95.9 0.031 1.1E-06 47.6 8.5 71 174-249 20-94 (98)
82 2k8h_A Small ubiquitin protein 95.9 0.013 4.5E-07 51.1 6.2 73 172-249 25-97 (110)
83 2eke_C Ubiquitin-like protein 95.9 0.021 7.3E-07 49.6 7.5 73 170-248 28-100 (106)
84 1wjn_A Tubulin-folding protein 95.8 0.053 1.8E-06 45.1 9.4 76 174-249 10-91 (97)
85 2dzm_A FAS-associated factor 1 95.8 0.039 1.3E-06 47.3 8.7 72 174-250 10-81 (100)
86 3ai5_A Yeast enhanced green fl 95.7 0.025 8.5E-07 57.4 8.4 71 173-248 233-303 (307)
87 2dzk_A UBX domain-containing p 95.6 0.068 2.3E-06 46.2 9.7 76 174-250 14-90 (109)
88 2lxa_A Ubiquitin-like protein 95.6 0.02 7E-07 47.7 6.1 70 174-248 2-75 (87)
89 1v6e_A Cytoskeleton-associated 95.6 0.062 2.1E-06 44.6 9.0 74 175-248 9-85 (95)
90 4ajy_B Transcription elongatio 95.5 0.034 1.1E-06 49.5 7.6 71 175-251 4-81 (118)
91 4dbg_A Ranbp-type and C3HC4-ty 95.5 0.037 1.3E-06 48.1 7.8 78 167-250 18-99 (105)
92 2fnj_B Transcription elongatio 95.4 0.035 1.2E-06 49.3 7.1 71 174-250 3-80 (118)
93 3sbg_A PRE-mRNA-splicing facto 95.3 0.043 1.5E-06 59.3 9.0 84 415-507 348-432 (565)
94 2kjr_A CG11242; UBL, ubiquitin 95.2 0.054 1.8E-06 45.7 7.4 73 175-248 17-93 (95)
95 1t0y_A Tubulin folding cofacto 95.0 0.067 2.3E-06 46.7 7.9 76 174-249 7-85 (122)
96 3kyd_D Small ubiquitin-related 95.0 0.076 2.6E-06 46.9 8.1 72 172-248 39-110 (115)
97 2kj6_A Tubulin folding cofacto 94.9 0.091 3.1E-06 44.6 8.1 74 175-248 16-93 (97)
98 1oqy_A HHR23A, UV excision rep 94.6 0.085 2.9E-06 54.7 8.5 71 174-249 8-82 (368)
99 2cr5_A Reproduction 8; UBX dom 94.6 0.19 6.6E-06 43.2 9.4 77 173-251 23-99 (109)
100 1wgh_A Ubiquitin-like 3, HCG-1 94.2 0.19 6.4E-06 44.2 8.6 69 174-247 17-93 (116)
101 2jxx_A Nfatc2-interacting prot 94.0 0.14 4.9E-06 43.8 7.3 70 173-247 25-95 (97)
102 2gow_A HCG-1 protein, ubiquiti 93.7 0.23 7.9E-06 44.1 8.3 68 172-244 16-91 (125)
103 1wj4_A KIAA0794 protein; UBX d 93.6 0.24 8.2E-06 43.8 8.2 76 173-250 43-119 (124)
104 3rzv_A STAM-binding protein; u 92.9 0.73 2.5E-05 44.4 11.0 75 13-154 112-189 (211)
105 2p8r_A PRP8, PRE-mRNA-splicing 92.8 0.24 8.4E-06 49.7 7.9 72 14-145 107-178 (273)
106 2znr_A AMSH-like protease; met 92.6 0.33 1.1E-05 45.2 8.0 75 13-154 79-156 (178)
107 4b6w_A Tubulin-specific chaper 92.5 0.46 1.6E-05 39.2 7.9 62 186-248 17-81 (86)
108 1se9_A Ubiquitin family; ubiqu 91.9 0.46 1.6E-05 42.5 7.7 67 173-244 16-90 (126)
109 2xzm_9 RPS31E; ribosome, trans 91.6 0.082 2.8E-06 50.4 2.7 66 174-249 1-66 (189)
110 2daf_A FLJ35834 protein; hypot 91.4 0.57 1.9E-05 41.7 7.7 72 174-250 16-88 (118)
111 2kc2_A Talin-1, F1; FERM, adhe 91.4 0.54 1.8E-05 42.3 7.6 77 173-249 11-121 (128)
112 2al3_A TUG long isoform; TUG U 91.3 0.62 2.1E-05 39.7 7.5 71 174-249 10-80 (90)
113 3sbg_A PRE-mRNA-splicing facto 90.8 0.87 3E-05 49.4 9.8 68 14-145 419-486 (565)
114 4a3p_A Ubiquitin carboxyl-term 89.9 1.1 3.6E-05 42.8 8.7 88 167-255 121-213 (217)
115 2og4_A PRE-mRNA-splicing facto 89.2 0.98 3.4E-05 44.9 8.1 68 13-145 107-175 (254)
116 4b4t_V 26S proteasome regulato 89.0 0.28 9.5E-06 49.5 4.1 85 415-506 25-112 (306)
117 3jyu_A Ubiquitin carboxyl-term 88.6 3.5 0.00012 39.6 11.4 93 163-256 129-226 (231)
118 2l76_A Nfatc2-interacting prot 88.4 2 6.8E-05 37.0 8.3 72 171-248 19-90 (95)
119 3pge_A SUMO-modified prolifera 88.0 1.1 3.9E-05 42.9 7.4 75 170-250 26-100 (200)
120 3shq_A UBLCP1; phosphatase, hy 87.8 0.95 3.2E-05 45.8 7.1 71 174-248 6-77 (320)
121 3tix_A Ubiquitin-like protein 87.3 1.3 4.4E-05 42.8 7.2 73 171-249 55-127 (207)
122 1s3s_G P47 protein; AAA ATPase 85.2 1.7 5.6E-05 38.5 6.4 71 173-245 52-123 (127)
123 2kcq_A MOV34/MPN/PAD-1 family; 84.4 4.7 0.00016 36.0 9.2 80 421-507 4-87 (153)
124 4b4t_V 26S proteasome regulato 82.3 3 0.0001 41.9 7.7 68 14-145 100-169 (306)
125 3goe_A DNA repair protein RAD6 80.7 4.3 0.00015 34.1 6.7 63 179-247 16-79 (82)
126 2kks_A Uncharacterized protein 78.3 3.9 0.00013 36.2 6.3 77 422-507 6-85 (146)
127 1y8x_B Ubiquitin-activating en 72.0 2.6 9E-05 36.1 3.3 62 186-248 7-82 (98)
128 3onh_A Ubiquitin-activating en 70.4 8 0.00027 34.8 6.2 63 187-251 9-80 (127)
129 3v7o_A Minor nucleoprotein VP3 69.1 0.98 3.4E-05 44.2 0.0 72 172-249 20-91 (227)
130 2bps_A YUKD protein; ubiquitin 52.9 26 0.0009 28.9 5.8 63 182-247 15-80 (81)
131 3uf8_A Ubiquitin-like protein 52.3 26 0.00089 33.0 6.5 71 173-249 21-91 (209)
132 1wgr_A Growth factor receptor- 51.3 23 0.00079 30.4 5.4 46 174-219 10-56 (100)
133 1ef1_A Moesin; membrane, FERM 48.7 54 0.0019 31.4 8.3 44 174-218 2-46 (294)
134 3ix6_A TS, tsase, thymidylate 48.3 3.8 0.00013 42.6 0.0 71 173-249 21-91 (360)
135 4da1_A Protein phosphatase 1K, 47.5 3.9 0.00013 41.7 0.0 75 168-248 25-99 (389)
136 1h4r_A Merlin; FERM, neurofibr 43.5 66 0.0022 31.3 8.1 45 174-219 23-68 (314)
137 2ylm_A Ubiquitin carboxyl-term 37.3 32 0.0011 36.9 5.1 64 185-249 148-216 (530)
138 2o95_A 26S proteasome non-ATPa 37.0 71 0.0024 29.0 6.7 84 415-506 8-100 (187)
139 1oey_A P67-PHOX, neutrophil cy 35.1 83 0.0028 26.2 6.2 49 175-225 7-55 (83)
140 1ryj_A Unknown; beta/alpha pro 33.6 1.4E+02 0.0048 23.0 7.0 63 171-248 2-64 (70)
141 2daj_A KIAA0977 protein, COBL- 33.6 52 0.0018 28.0 4.7 58 186-248 23-80 (91)
142 2i1j_A Moesin; FERM, coiled-co 32.8 1.2E+02 0.004 33.0 8.6 44 174-218 5-49 (575)
143 3ivf_A Talin-1; FERM domain, c 31.1 1.5E+02 0.0051 29.6 8.5 47 173-219 85-132 (371)
144 3tca_A Amyloid beta A4 precurs 29.6 86 0.0029 29.5 6.2 49 171-219 32-81 (291)
145 2nvu_B Maltose binding protein 28.7 71 0.0024 35.4 6.1 64 185-248 713-789 (805)
146 3ivf_A Talin-1; FERM domain, c 27.7 1.1E+02 0.0036 30.6 6.8 71 176-249 6-83 (371)
147 1tt5_B Ubiquitin-activating en 25.2 47 0.0016 34.8 3.7 63 186-248 343-418 (434)
148 3u52_E Phenol hydroxylase comp 24.5 1E+02 0.0035 27.4 5.2 58 186-248 40-107 (119)
149 3w1s_C Ubiquitin-like protein 23.8 1.1E+02 0.0039 25.6 5.1 61 186-252 25-87 (91)
150 4e0q_A COP9 signalosome comple 23.8 1.6E+02 0.0054 26.1 6.4 75 424-505 14-95 (141)
151 4eyg_A Twin-arginine transloca 22.3 1E+02 0.0034 29.2 5.2 95 411-505 113-230 (368)
152 4gdk_A Ubiquitin-like protein 21.9 1.7E+02 0.0057 24.4 5.8 63 186-252 22-87 (91)
153 2rh2_A Dihydrofolate reductase 20.9 37 0.0013 26.4 1.4 14 497-510 25-38 (62)
154 3qij_A Protein 4.1; cytoskelet 20.5 1.2E+02 0.0042 29.5 5.5 45 173-217 17-62 (296)
No 1
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=99.64 E-value=1.5e-16 Score=131.80 Aligned_cols=74 Identities=34% Similarity=0.665 Sum_probs=63.8
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
|+||||||+| |+||++++++++.+|+++|.+.++++.+.+.++...+.++++....+.+|+++||+|||||||.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 8999999999 9999999999999999999999999887766654443355665558899999999999999986
No 2
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.17 E-value=6e-11 Score=102.21 Aligned_cols=81 Identities=23% Similarity=0.382 Sum_probs=65.5
Q ss_pred eeeeeeCCCcceeeEEec-CCcchHHHHHHHHhhcCCCCCcceeeecCC------ccc--ccc--ccccccccccCCCCc
Q psy8916 174 KILRIQSPVGIVKRININ-RSDTCKDLFEKINKEFELNTYNFALFKQRN------KTD--EIF--SSRDQTIASVGLSNG 242 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~-ptDtfs~LleKLl~~f~ls~dsftL~~nr~------~~~--~l~--s~~~~tv~~lgLkHG 242 (520)
|+|||||++| ++||+|+ +++++.+|.++|...++++.+.+.|+.+.. ... .+. ...+++|+++||+||
T Consensus 8 M~irvrs~~G-~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDG-LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSC-EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCC-CEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 8999999999 9999999 999999999999999999988777754332 111 231 246789999999999
Q ss_pred CeEEEeecCCCCC
Q psy8916 243 DFVYMMNLSSPND 255 (520)
Q Consensus 243 Dmlyl~~~~~~~~ 255 (520)
|+|||.+......
T Consensus 87 ~~L~l~~~~~~~~ 99 (107)
T 1wf9_A 87 SMVYLAYEGERTI 99 (107)
T ss_dssp CEEECCCSSCCCC
T ss_pred CEEEEEeCCCCcc
Confidence 9999998765433
No 3
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.49 E-value=3.2e-07 Score=75.55 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=60.2
Q ss_pred eeeeeeCCCcceeeEE-ecCCcchHHHHHHHHhhcCCCCCcceeeec-CCcccccc-ccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRIN-INRSDTCKDLFEKINKEFELNTYNFALFKQ-RNKTDEIF-SSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVe-v~ptDtfs~LleKLl~~f~ls~dsftL~~n-r~~~~~l~-s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.||||+++| ..+|+ +++++++.+|.++|.+..+++.+.+.|... ++ +.+. +..+++|+++||+||++|+|...
T Consensus 1 m~i~vr~~~G-~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~--k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGG-THLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPP--ECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTE-EEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCC--CCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCC-CEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCC--cccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 7899999999 88999 999999999999999999988766665432 22 2332 22578999999999999999744
No 4
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.90 E-value=4.1e-05 Score=59.58 Aligned_cols=71 Identities=13% Similarity=0.253 Sum_probs=59.9
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.|+|++.+|+.+.+++++++++.+|.++|.+..+++.+.+.|..+ ...+. ++.+|+++|+++|+.|++..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~---g~~L~--d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS---GKQMN--DEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEECC--TTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC---CEECC--CCCcHHHcCCCCCCEEEEEE
Confidence 6789999999778999999999999999999999999877776543 12343 46799999999999999874
No 5
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.84 E-value=5.2e-05 Score=59.00 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=59.8
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.|+|++.+|..+.+++++++++.+|.++|.+..+++.+.+.|..+ ...+. ++.+|+++|+++|+.|++..
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~---g~~L~--d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEECC--TTCBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC---CeECC--CCCcHHHcCCCCCCEEEEEE
Confidence 6789999999778999999999999999999999998877776543 12343 46799999999999999874
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=97.77 E-value=9.6e-05 Score=58.81 Aligned_cols=71 Identities=13% Similarity=0.092 Sum_probs=60.2
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.|.|++.+|+++.+++++++++.+|.++|.+..+++.+.+.|..+ ...+. ++.+|+++|+++|+.|++..
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~---G~~L~--d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE---GKPLE--DQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET---TEECC--TTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC---CEECC--CCCcHHHCCCCCCCEEEEEE
Confidence 7889999999888999999999999999999999999877776542 12344 46899999999999999863
No 7
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=9.8e-05 Score=58.49 Aligned_cols=70 Identities=6% Similarity=0.143 Sum_probs=59.1
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
|.|+|++.+|+.+.+++++++++.+|.++|.+..+++.+.+.|..+ ...+. ++.+|+++|+++|+.|++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~---gk~L~--d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK---GKALA--DGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET---TEECC--TTSBGGGGTCCSSBCCEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC---CeECC--CCCcHHHcCCCCCCEEEEE
Confidence 7889999999778899999999999999999999999877776543 22343 4679999999999999986
No 8
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=97.71 E-value=9.8e-05 Score=61.55 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=60.8
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|+|++.+|+.+.+++++++++.+|.++|....+++.+.+.|..+ ...|. ++.+|+++|+++|+.|+|...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~---Gk~L~--D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET---TEECC--TTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC---CEECC--CCCCHHHcCCCCCCEEEEEEe
Confidence 6789999999778999999999999999999999999877777543 22343 478999999999999998754
No 9
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=97.71 E-value=0.00014 Score=57.09 Aligned_cols=71 Identities=23% Similarity=0.186 Sum_probs=58.9
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
.|.|+|++ .|..+.+++++++++.+|.++|....+++.+.+.|..+. ..+. ++.+|+++|+++|+.|++..
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~g---k~L~--d~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSG---KILK--DDQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT---EECC--TTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECC---eEcC--CCCCHHHcCCCCCCEEEEEE
Confidence 37889999 776889999999999999999999999998777765431 2343 46899999999999999863
No 10
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=97.70 E-value=0.00014 Score=58.01 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=61.0
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|.|++.+|.++.|++++++++.+|.++|.+..+++.+.+.|..+ ...+. ++.+|+++|+++|+.|+|...
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~---g~~L~--d~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEECC--TTSBTGGGTCCTTCEEEEECC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC---CEECC--CCCCHHHcCCCCCCEEEEEEE
Confidence 7889999999888999999999999999999999999877777542 12344 468999999999999999753
No 11
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=97.67 E-value=0.00011 Score=58.69 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=60.9
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|.|++.+|.++.+++++++++.+|.++|.+..+++.+.+.|..+ ...+. ++.+|+++|+++|+.|++...
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~---g~~L~--d~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---BEECC--TTCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC---CeECC--CCCCHHHCCCCCCCEEEEEEe
Confidence 7789999999788999999999999999999999999887777543 12344 467999999999999999754
No 12
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=97.67 E-value=0.00014 Score=58.52 Aligned_cols=72 Identities=13% Similarity=0.241 Sum_probs=60.5
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
-|.|.|++.+|..+.|++++++++.+|.++|.+..+++.+.+.|..+ ...+. ++.+|+++|+++|+.|++..
T Consensus 12 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~---G~~L~--d~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS---GKQMN--DEKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET---TEECC--TTSBGGGGTCCTTCEEEECC
T ss_pred cEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC---CeECC--CCCcHHHcCCCCCCEEEEEE
Confidence 38899999999888999999999999999999999999877766542 12344 47899999999999999863
No 13
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=97.65 E-value=0.00018 Score=59.16 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=60.6
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
.|.|.|++.+|.++.|++++++++.+|.++|.+..+++.+.+.|..+ ...+. ++.+|+++|+++|+.|+|.
T Consensus 17 ~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~L~--D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 17 SMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp SEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEECC--TTCBTGGGTCCTTCEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC---CeECC--CcCcHHHCCCCCCCEEEEE
Confidence 58899999999888999999999999999999999999877776542 12344 4689999999999999986
No 14
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=97.65 E-value=0.00012 Score=60.13 Aligned_cols=72 Identities=13% Similarity=0.244 Sum_probs=60.6
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|.|++.+|.++.|++++++++.+|.++|.+..+++.+.+.|..+ ...|. ++.+|+++|+++|+.|+|...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~L~--D~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS---GKQMN--DEKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEECC--TTSBTTTTTCCTTCEEEEECB
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC---CeECC--CCCcHHHcCCCCCCEEEEEEE
Confidence 6789999999888999999999999999999999999877776542 22343 478999999999999999753
No 15
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=97.60 E-value=0.00017 Score=59.40 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=61.0
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|.|++.+|..+.|++++++++.+|.++|.+..+++.+.+.|..+. ..|. ++.+|+++|+++|+.|+|...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G---~~L~--d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG---KQLE--DGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT---EECC--TTSBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECC---EECC--CCCcHHHcCCCCCCEEEEEEE
Confidence 67899999997889999999999999999999999998877776421 2344 567999999999999999864
No 16
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00015 Score=61.89 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=60.2
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeecC
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNLS 251 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~~ 251 (520)
|.|.|++..|..+.|+|++++++.+|.++|....+++.+.+.|... .+.|. ++.+|+++|+++|+.|+|....
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~L~--D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS---GKVLQ--DSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET---TEECC--TTSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC---CEECC--CcCCHHHcCCCCCCEEEEEEcC
Confidence 7788999888788999999999999999999999998877776542 12343 4689999999999999998543
No 17
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=97.58 E-value=0.00017 Score=59.24 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=60.9
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|+|++..|+.+.+++++++++.+|.++|....+++.+.+.|..+ ...+. ++++|+++|+++|+.|+|...
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~L~--D~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE---GKPLE--DQLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS---SSCCC--TTSBHHHHHCSTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC---CEECC--CCCcHHHcCCCCCCEEEEEEE
Confidence 7889999998788999999999999999999999999887777543 12343 578999999999999999754
No 18
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.56 E-value=0.00047 Score=57.40 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=58.4
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhh---cCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKE---FELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~---f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|.|++..|..+.+++++++++.+|.++|... -+++.+.+.|... ...|. ++.+|+++|+++|+.|+|...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~---Gk~L~--D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA---GKILN--DDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET---TEECC--TTSBGGGGTCCSSSEEEEEES
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC---CEECC--CcCcHHHCCCCCCCEEEEEEe
Confidence 678999998878899999999999999999998 4577766666542 12343 468999999999999998754
No 19
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=97.56 E-value=0.00026 Score=57.77 Aligned_cols=73 Identities=10% Similarity=0.137 Sum_probs=60.7
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeecC
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNLS 251 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~~ 251 (520)
-|.|+|++.+|+++.|+|++++++.+|.++|....+++.+.+.|..+ ...|. ++.+|+++|+ +|+.|+|....
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~---Gk~L~--d~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ---GRVLQ--DDKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET---TEECC--TTSBGGGGTC-TTEEEEEEECC
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC---CeECC--CCCCHHHcCC-CCcEEEEEecC
Confidence 37889999999888999999999999999999999999877776542 22344 4779999999 89999998653
No 20
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=97.55 E-value=0.00026 Score=56.04 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=58.8
Q ss_pred eeeeeeCCCccee-eEE-ecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVGIVK-RIN-INRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~-RVe-v~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.|+|++.+|+.. .++ +++++++.+|.++|....+++.+.+.|... ...+. ++.+|+++|+++|+.|++..
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~---g~~L~--d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR---GKQME--DGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEECC--TTCBTTTTTCCTTCEEEEEE
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC---CEECC--CCCCHHHcCCCCCCEEEEEE
Confidence 7889999999553 799 999999999999999999999877776543 12343 57899999999999999864
No 21
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.54 E-value=0.00021 Score=57.65 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=60.7
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|+|++.+|+.+.+++++++++.+|.++|.+..+++.+.+.|..+. ..+. ++.+|+++|+++|+.|+|...
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~G---k~L~--d~~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQG---QVLQ--DWLGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETT---EECC--SSSBHHHHTCCTTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECC---EEcc--CCCCHHHCCCCCCCEEEEEEe
Confidence 78899999987789999999999999999999999998877775431 2343 568999999999999999754
No 22
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=97.54 E-value=0.00043 Score=59.39 Aligned_cols=73 Identities=11% Similarity=0.148 Sum_probs=62.0
Q ss_pred ceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 172 FYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 172 fYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
--|.|+|++.+|+.+.+++++++++.+|.++|....+++.+.+.|..+ ...|. ++.+|+++|+++|+.|+|..
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~L~--D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET---TEECC--SSCBTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC---CEECC--CCCcHHHcCCCCCCEEEEEE
Confidence 579999999999778999999999999999999999999887777543 22343 47899999999999999874
No 23
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.53 E-value=0.00041 Score=56.29 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=60.2
Q ss_pred eeeeeeCCCc-ceeeEE-ecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVG-IVKRIN-INRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG-~m~RVe-v~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|+|++.+| ..+.|+ +++++++.+|.++|....+++.+.+.|..+ ...+. ++.+|+++|+++|+.|+|...
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~---gk~L~--d~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR---GKQLE--NGYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET---TEECC--SSSBHHHHTCCTTCEEEEEEC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC---CeECC--CCCCHHHCCCCCCCEEEEEEe
Confidence 7899999988 578994 999999999999999999999887777553 12343 578999999999999999754
No 24
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=97.52 E-value=0.00018 Score=57.20 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=60.9
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
.|.|.|++.+|+.+.++|++++++..|.+++.+..+++.+.+.|..+ ...|. .+.|++++|+++||.|.+..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~---G~~L~--d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE---GQRIA--DNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEECC--TTCCHHHHTCCTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC---CEEeC--CCCCHHHcCCCCCCEEEEEE
Confidence 47899999999888999999999999999999999999877766543 23344 56899999999999999864
No 25
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=97.49 E-value=0.00044 Score=55.41 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=58.7
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhh---cCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKE---FELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~---f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
-|.|+|++.+|..+.+++++++++.+|.++|... -+++.+.+.|..+ ...|. ++.+|+++|+++|+.|+|..
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~---Gk~L~--D~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA---GKILS--DDVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET---TEECC--TTSBGGGGCCCTTSEEEEEE
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC---CEECc--CCCCHHHcCCCCCCEEEEEE
Confidence 4788999998878899999999999999999998 4677666666542 12343 56899999999999999974
Q ss_pred c
Q psy8916 250 L 250 (520)
Q Consensus 250 ~ 250 (520)
.
T Consensus 80 ~ 80 (85)
T 2wyq_A 80 T 80 (85)
T ss_dssp C
T ss_pred c
Confidence 3
No 26
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00026 Score=59.33 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=60.9
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
.|.|.|++.+|..+.|+|++++++.+|.++|....+++.+.+.|..+. ..|. ++++|+++|+++|+.|+|..
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G---k~L~--D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG---KQLE--DGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT---EECC--TTCBSGGGTCCTTEEEEEEC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECC---EECC--CCCcHHHCCCCCCCEEEEEE
Confidence 488999999998899999999999999999999999998777765421 2343 57799999999999999863
No 27
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.47 E-value=0.00023 Score=61.55 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=61.6
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|.|++..|..++|+|+|++++.+|.++|.+..+++.+.+.|... ...|. ++.+|++.|++.|+.|.|.|.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~---Gk~L~--D~~TL~dygI~~gstlhL~~~ 100 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW---YTIFK--DHVSLGDYEIHDGMNLELYYQ 100 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET---TEECC--SSCBHHHHTCCTTEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC---CEECC--CCCCHHHcCCCCCCEEEEEeC
Confidence 8889999988789999999999999999999999999887777543 22343 478999999999999999874
No 28
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.46 E-value=0.00039 Score=59.17 Aligned_cols=73 Identities=10% Similarity=0.092 Sum_probs=61.1
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
-|.|+|++..|+.+.+++++++++.+|.++|....+++.+.+.|... ...|. ++++|+++|+++|+.|+|...
T Consensus 23 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~L~--D~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 23 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS---GRPLT--DKMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET---TEECC--TTSHHHHCCCSSSCEEEEECC
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC---CEECC--CCCcHHHcCCCCCCEEEEEEe
Confidence 48899999999788999999999999999999999998877776543 12343 578999999999999999743
No 29
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.46 E-value=0.00046 Score=58.54 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=60.8
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
.|.|+|++..| .+.|++++++++.+|.++|.+..+++.+.+.|..+ ...|. ++++|+++|+++|+.|+|...
T Consensus 17 ~m~I~Vk~~~g-~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~L~--D~~tL~~~gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 17 LIKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA---GKILK--DPDSLAQCGVRDGLTVHLVIK 88 (106)
T ss_dssp EEEEEEECSSC-EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET---TEECC--TTSCHHHHTCCTTEEEEEEEC
T ss_pred eEEEEEEeCCC-cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC---CEECC--CcCcHHHcCCCCCCEEEEEEc
Confidence 48899999999 78999999999999999999999998877777543 12343 578999999999999999754
No 30
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=97.42 E-value=0.00039 Score=57.08 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=60.5
Q ss_pred ceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 172 FYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 172 fYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
.=|.|.+++-+|+.+.+++++++++.+|.++|.+..+++.+.+.|..+ ...+. ++.+|+++|+++|+.|+|..
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~L~--D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET---TEECC--TTSBSGGGTCCTTCEEEEEC
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC---CEECC--CCCcHHHcCCCCCCEEEEEE
Confidence 347888999999888999999999999999999999999877777543 22343 46899999999999999974
No 31
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=97.34 E-value=0.00048 Score=57.76 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=61.5
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
.|.|.|++.+|+.+.++|++++++..|.+++.+..+++.+.+.|..+ ...|. .+.||+++|+++||.|.|..
T Consensus 21 ~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~---Gk~L~--d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE---GQRIA--DNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEECC--TTCCHHHHTCCTTCEEEEEE
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC---CeEcC--CCCCHHHCCCCCCCEEEEEE
Confidence 58899999999788999999999999999999999999877776543 23344 56899999999999999864
No 32
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.34 E-value=0.00059 Score=57.70 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=57.5
Q ss_pred eeeeeeCCCc----ceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVG----IVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG----~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.|+|+++.| +.+.|++++++++.+|.++|....+++.+.+.|..+. +.|. -..++|+++|+++|+.|+|..
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~g---k~L~-D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYME---QLLT-DDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETT---EEEC-CSSSBHHHHTCCTTEEEEECB
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECC---EECC-CCcccHHHCCCCCCCEEEEEE
Confidence 7788888654 4678999999999999999999999998777765432 2232 223689999999999999974
Q ss_pred c
Q psy8916 250 L 250 (520)
Q Consensus 250 ~ 250 (520)
.
T Consensus 84 ~ 84 (102)
T 1v5o_A 84 K 84 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 33
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=97.34 E-value=0.00071 Score=57.28 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=59.8
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|+|++..| .+.|++++++++.+|.++|.+..+++.+.+.|..+ ...|. ++++|+++|+++|+.|+|...
T Consensus 23 m~I~Vk~~~g-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~L~--D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 23 IKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA---GKILK--DPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET---TEECC--TTSBHHHHTCCTTCEEEEEEC
T ss_pred EEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC---CEECC--CcCcHHHCCCCCCCEEEEEEc
Confidence 7889999999 78999999999999999999999999877776543 12343 568999999999999999754
No 34
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=97.29 E-value=0.00077 Score=57.99 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=68.1
Q ss_pred ceEeccCCCcccccc-cceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccc
Q psy8916 156 LGYIKESSDKQYVPD-VFYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTI 234 (520)
Q Consensus 156 ~~~~~~~~~~~yvp~-vfYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv 234 (520)
..+..+..+.--.++ .--|.|+|++.+|+.+.|++++++++.+|.++|....+++.+.+.|..+. ..|. .+.+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G---k~L~--D~~tL 91 (111)
T 3vdz_A 17 ELYIDTDNDGSIDGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG---KQLE--DGRTL 91 (111)
T ss_dssp GEEECTTCSSCCCTGGGGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT---EECC--TTSBT
T ss_pred eeccccccccccCcCCCccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECC---EECC--CCCcH
Confidence 344444444333332 33589999999998899999999999999999999999998777765421 2344 46799
Q ss_pred cccCCCCcCeEEEee
Q psy8916 235 ASVGLSNGDFVYMMN 249 (520)
Q Consensus 235 ~~lgLkHGDmlyl~~ 249 (520)
+++|+++|+.|+|..
T Consensus 92 ~~~gI~~gs~I~l~~ 106 (111)
T 3vdz_A 92 SDYNIQKESTLHLVL 106 (111)
T ss_dssp TTTTCCTTCEEEEEE
T ss_pred HHCCCCCCCEEEEEE
Confidence 999999999999874
No 35
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=97.27 E-value=0.00096 Score=57.16 Aligned_cols=72 Identities=8% Similarity=0.086 Sum_probs=59.5
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
.|-|-|..+.|+..+|+|+|+|++.+|.++|.+..+++.+.+.|... ...+. +..||++.|++.|+-|.|-|
T Consensus 21 mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~---Gk~Lk--D~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 21 MIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG---GSVLK--DHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET---TEECC--TTSBTGGGTCCTTCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC---CEEcc--CcCCHHHcCCCCCCEEEEEe
Confidence 35567888899889999999999999999999999999887777431 22344 46799999999999998876
No 36
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.26 E-value=0.00065 Score=55.78 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=60.1
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCcccc-ccccccccccccCCCCcCeEEEe
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDE-IFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~-l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
-|.|.+++-.|+.+.+++++++++.+|.++|.+..+++.+.+.|..+ ... +. ++++|+++|+++|+.|+|.
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~lL~--D~~tL~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD---GIVILR--EDLTVEQCQIVPTSDIQLE 81 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET---TEECCC--SSSBHHHHTCCTTSCEEEE
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC---CEEecC--CcCCHHHcCCCCCCEEEEE
Confidence 48889999999889999999999999999999999999887777543 122 33 5789999999999999986
No 37
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=97.23 E-value=0.00075 Score=59.09 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=60.4
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|+|++.+|..+.+++++++++.+|.++|....+++.+...|... ...+. ++.+|+++|+++|+.|++...
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~---g~~L~--d~~tL~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEECC--TTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC---CeECc--CcccHHHhccCCCCeeEEEee
Confidence 6789999999788999999999999999999999998877666543 12343 578999999999999999754
No 38
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=96.31 E-value=4.8e-05 Score=59.88 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=57.9
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
|.|+|++.+|..+.+++++++++.+|.++|.+..+++.+.+.|..+ ...+. ++.+|+++|+++|+.|++.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~---gk~L~--d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA---GKELP--NHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 6788999999678899999999999999999999988776666432 12343 4689999999999999985
No 39
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.22 E-value=0.00089 Score=56.05 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=59.5
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCcccccccccc-ccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRD-QTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~-~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|.|++..| .+.|+|++++++.+|.++|....+++.+.+.|... .+.|. ++ .+|+++|++.|+.|+|...
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~L~--D~~~tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS---GIELA--DDYRNLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET---TEEEC--CTTSBHHHHTCCTTEEEEEEEC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC---CEECC--CCcccHHHCCCCCCCEEEEEEe
Confidence 6788999999 99999999999999999999999999887777543 12343 45 7999999999999999743
No 40
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=97.18 E-value=0.0011 Score=53.85 Aligned_cols=70 Identities=10% Similarity=0.144 Sum_probs=58.1
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
-|.|.|++.+|..+.+++++++++.+|.++|.+..+++.+...|... ...+. ++.+|+++|+ +|+.|+|.
T Consensus 17 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~---Gk~L~--D~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 17 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ---GRVLQ--DDKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET---TEECC--TTSBGGGGTC-TTEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC---CEECC--CCCcHHHcCC-CCcEEEEE
Confidence 37889999988788999999999999999999999999877776542 12344 4779999999 89999985
No 41
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=97.16 E-value=0.0017 Score=54.93 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=59.2
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
-|.|.|++. |..+.|++++++++.+|.++|....+++.+.+.|... ...|. ++++|+++|+++|+.|+|...
T Consensus 25 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~L~--D~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 25 IMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA---GKILK--DQDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp CEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET---TEEEC--TTCCTGGGTCCTTCEEEEEEC
T ss_pred eEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC---CEECC--CcCcHHHcCCCCCCEEEEEEc
Confidence 478888888 5588999999999999999999999999877776543 12343 568999999999999999743
No 42
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.11 E-value=0.0018 Score=55.35 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=59.4
Q ss_pred eeeeeeCC---CcceeeEEecC-CcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSP---VGIVKRININR-SDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSk---dG~m~RVev~p-tDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.|+|+++ .|..+.+++++ ++++.+|.++|....+++.+.+.|.... ..+. ++.+|+++|+++|+.|+|..
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~G---k~L~--D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKA---GFLK--DNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSS---SBCC--TTSBTTTTTCSSSCEEEEEC
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECC---EECC--CCCcHHHCCCCCCCEEEEEE
Confidence 78889998 88778899998 9999999999999999998877775421 2333 46899999999999999974
No 43
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.08 E-value=0.0016 Score=57.53 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=59.9
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
-|.|+|++. |..+.|++++++++.+|.++|....+++.+.+.|..+ ...|. ++++|+++|+++|+.|+|...
T Consensus 32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~L~--D~~tL~dygI~~gstI~lv~~ 103 (125)
T 1j8c_A 32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA---GKILK--DQDTLIQHGIHDGLTVHLVIK 103 (125)
T ss_dssp CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET---TEEES--TTSCGGGTTCSSSEEEEEEEC
T ss_pred cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC---CEEcC--CCCCHHHcCCCCCCEEEEEec
Confidence 488889988 6588999999999999999999999999887777543 12343 568999999999999999754
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.06 E-value=0.0013 Score=54.34 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=58.4
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
.|.|+|++. |..+.+++++++++.+|.++|....+++.+.+.|... ...|. ++++|+++|+++|+.|+|..
T Consensus 17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~L~--D~~tL~~~gi~~g~~i~l~~ 87 (96)
T 1wx8_A 17 IIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT---GKILR--DQDILSQRGILDGSTVHVVV 87 (96)
T ss_dssp EEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET---TEECC--TTSCHHHHTCCTTEEEECCB
T ss_pred cEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC---CEECC--CcCCHHHCCCCCCCEEEEEE
Confidence 478889988 6588999999999999999999999998876666542 12343 56899999999999999864
No 45
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=97.03 E-value=0.0014 Score=54.42 Aligned_cols=69 Identities=6% Similarity=0.080 Sum_probs=56.9
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.|.|++ |..+.+++++++++.+|.++|.+..+++.+.+.|..+ ...|. ++++|+++|+++|+.|+|..
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~L~--D~~tL~~y~I~~gstI~lv~ 88 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA---GAPLE--DEATLGQCGVEALTTLEVAG 88 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET---TEECC--TTSBHHHHTCCSSCEEEEEC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC---CEECC--CCCcHHHCCCCCCCEEEEEE
Confidence 6777888 6588999999999999999999999998877776543 12343 57899999999999999863
No 46
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.00088 Score=56.87 Aligned_cols=70 Identities=23% Similarity=0.184 Sum_probs=57.0
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
-+.|+|++ .|..+.|++++++++.+|.++|.+..+++.+.+.|..+ .+.|. .+.+|+++|++.|+.|+|.
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~L~--D~~tL~~~gI~~g~tI~lv 97 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS---GKILK--DDQTVESYHIQDGHSVHLV 97 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET---TEECC--TTSBTTTTTCCTTEEEEEC
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC---CEECC--CcCcHHHCCCCCCCEEEEE
Confidence 36678888 66688999999999999999999999998877766542 12344 4789999999999999986
No 47
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.01 E-value=0.0034 Score=51.84 Aligned_cols=70 Identities=14% Similarity=0.024 Sum_probs=54.6
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCcccccccccc-ccccccCCCCcCeEEEeec
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRD-QTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~-~tv~~lgLkHGDmlyl~~~ 250 (520)
.|.|+|++..|+.+.++|++++++.+|.++|.... .+.+.|... ...|. ++ ++|+++|+++|+.|+|...
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~---Gk~L~--D~~~tL~~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 7 GINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQ---GRLLQ--DPARTLSSLNITNNCVIHCHRS 77 (95)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEET---TEECC--CSSCBTTTTTCCTTEEEEEECC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEEC---CEEcc--CCcCCHHHcCCCCCCEEEEEEC
Confidence 48899999888778999999999999999999887 333444432 12333 34 7999999999999999754
No 48
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=96.99 E-value=0.0023 Score=51.04 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=58.7
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEE
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl 247 (520)
++.|++++.+|....+.+.+++++..|++...+..+++...+.+.-+ ..+|. .+.|+++|++..||.|-+
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd---G~~l~--~~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQPIN--ETDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET---TEECC--TTCCTTTTTCCTTEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC---CEEcC--CCCCHHHcCCCCCCEEEE
Confidence 37899999999778999999999999999999999998877665443 23454 567999999999999876
No 49
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=96.98 E-value=0.0023 Score=60.71 Aligned_cols=81 Identities=12% Similarity=0.139 Sum_probs=65.7
Q ss_pred Cccccc-ccceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCc
Q psy8916 164 DKQYVP-DVFYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNG 242 (520)
Q Consensus 164 ~~~yvp-~vfYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHG 242 (520)
...|.+ |-|-|-|.|++.+|.++.|+|++++++.+|.++|.+..+++.+.+.|... ...|. ++.+|+++|+++|
T Consensus 95 g~~y~T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~---Gk~L~--D~~tL~dygI~~g 169 (189)
T 3q3f_A 95 WLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKE 169 (189)
T ss_dssp CCEEEESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET---TEECC--TTCBGGGGTCCTT
T ss_pred CcEEEcccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC---CEECC--CCCCHHHCCCCCC
Confidence 344554 55559999999999889999999999999999999999998876666542 12344 4679999999999
Q ss_pred CeEEEee
Q psy8916 243 DFVYMMN 249 (520)
Q Consensus 243 Dmlyl~~ 249 (520)
+.|+|..
T Consensus 170 stI~Lvl 176 (189)
T 3q3f_A 170 STLHLVL 176 (189)
T ss_dssp CEEEECC
T ss_pred CEEEEEE
Confidence 9999963
No 50
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=96.88 E-value=0.0026 Score=58.83 Aligned_cols=72 Identities=11% Similarity=0.142 Sum_probs=61.0
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|.|++.+|+++.+++++++++.+|.++|....+++.+.+.|... ...|. ++++|+++|+++|+.|+|...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~L~--D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET---TEECC--TTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC---Ccccc--CcCcHHHcCCCCCCEEEEEEE
Confidence 6788999999888999999999999999999999999887776542 12343 578999999999999999754
No 51
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=96.86 E-value=0.0032 Score=54.99 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=59.9
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.|.+++.+|..+.+++++++++.+|.++|.+..+++.+.+.|..+ ...+. ++.+|+++|+++|+.|+|..
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~---g~~L~--d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEECC--TTSBTGGGTCCTTCEEEEEE
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC---CEECC--CCCCHHHcCCCCCCEEEEEE
Confidence 7788999999888999999999999999999999998877776543 12343 57899999999999999974
No 52
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=96.80 E-value=0.0029 Score=59.25 Aligned_cols=76 Identities=22% Similarity=0.392 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhc---CceeeEEEEEEEeeCCCCCccceEEEEEEecCCCCCCCCceEEcCCCChHHHHHHHHhcCCeE
Q psy8916 422 RTLVERFLEYWRVT---GHQRLGLLYGKYQLHPDVPLGIKAVVAAIYEPPQESSRDKIKLLPDPKAEVVEEIASSLGLTQ 498 (520)
Q Consensus 422 ~~~v~~Fi~~wr~~---g~QR~G~LYG~Y~~~~~vPlGikAvVeAIYEPPQ~~~~dg~~ll~d~~e~~Vd~iA~~LGL~r 498 (520)
.++++.|+.-=+.. +.+-+|+|||+...+ .-.|..++.|||.++.+.+.+.. ++.+-+.+..-||+.
T Consensus 15 ~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~-------~~~V~~v~~~pq~~t~~~~~~~~---~~e~~~~~~~~~l~~ 84 (178)
T 2znr_A 15 EDLCHKFLQLAESNTVRGIETCGILCGKLTHN-------EFTITHVIVPKQSAGPDYCDMEN---VEELFNVQDQHDLLT 84 (178)
T ss_dssp TTHHHHHHHHHHHHHTTTCCCEEEEEEEEETT-------EEEEEEEEECCEEEETTEEEECC---HHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEEeeEecCC-------CeEEEEEEeCCcCCCCCeeccCC---HHHHHHHHHhCCCEE
Confidence 35899999988874 379999999998643 23788999999999999887653 222344567789999
Q ss_pred EEEEEecCc
Q psy8916 499 VGWIFTDLV 507 (520)
Q Consensus 499 VG~IFTdl~ 507 (520)
|||+=||-.
T Consensus 85 vGwyHSHP~ 93 (178)
T 2znr_A 85 LGWIHTHPT 93 (178)
T ss_dssp EEEEEECSS
T ss_pred EEEEeCCCC
Confidence 999999853
No 53
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=96.79 E-value=0.0041 Score=55.57 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=60.0
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.|.+++.+|.++.+++++++++.+|.++|....+++.+.+.|..+. ..+. ++.+|++.|+++|+.|+|..
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G---~~L~--d~~tL~~y~i~~g~~l~l~~ 152 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG---KPLE--DQLPLGEYGLKPLSTVFMNL 152 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETT---EECC--TTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECC---eecC--CCCCHHHcCCCCCCEEEEEE
Confidence 67788999998899999999999999999999999998777765422 3344 46899999999999999874
No 54
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=96.79 E-value=0.00047 Score=63.25 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=0.0
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.|.|++.+|.++.|+|++++++.+|.++|.+..+++.+.+.|..+ ...|. ++.+|+++||++|+.|+|..
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~L~--D~~tL~dygI~~gstL~Lvl 71 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC---CEEcc--ccCcHHHcCCCCCCEEEEEe
Confidence 5688899998788999999999999999999999998876666532 12343 56799999999999999874
No 55
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.77 E-value=0.0064 Score=49.91 Aligned_cols=71 Identities=8% Similarity=0.170 Sum_probs=56.8
Q ss_pred eeeeeeeCCCcceeeEEecCC-----cchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEE
Q psy8916 173 YKILRIQSPVGIVKRININRS-----DTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~pt-----Dtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl 247 (520)
.|.|+|++... .+.|+++++ +++.+|.++|....+++.+.+.|... .+.|. -.+++|+++|+++|+.|+|
T Consensus 7 ~~~v~Vk~~~~-~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~---Gk~L~-D~~~~L~~~~i~~g~~i~l 81 (92)
T 1wxv_A 7 GLTVTVTHSNE-KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK---GKSLK-EMETPLSALGIQDGCRVML 81 (92)
T ss_dssp SEEEEEECSSS-EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET---TEEEC-CSSSBHHHHTCCSSEEEEE
T ss_pred eEEEEEEECCE-EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC---CeecC-CCcccHHHCCCCCCCEEEE
Confidence 37788998755 889999995 99999999999999999887777543 12232 2356899999999999999
Q ss_pred e
Q psy8916 248 M 248 (520)
Q Consensus 248 ~ 248 (520)
.
T Consensus 82 ~ 82 (92)
T 1wxv_A 82 I 82 (92)
T ss_dssp E
T ss_pred E
Confidence 6
No 56
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=96.74 E-value=0.0043 Score=52.22 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=60.5
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
.+.|+|++.+|....+.|.+++++..|++...+..+++...+.+.-+ ..+|. .+.|+++|++..||.|-+..
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd---G~~l~--~~~Tp~dl~medgD~Idv~~ 76 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQPIN--ETDTPAQLEMEDEDTIDVFQ 76 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET---TEECC--TTCCTTTTTCCTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC---CEEcC--CCCCHHHcCCCCCCEEEEEE
Confidence 47899999999778999999999999999999999998877765443 23454 56799999999999988864
No 57
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=96.71 E-value=0.005 Score=50.14 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=58.4
Q ss_pred eeeeeeeCCCcc-eeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEE
Q psy8916 173 YKILRIQSPVGI-VKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247 (520)
Q Consensus 173 YMiIRfRSkdG~-m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl 247 (520)
.+.|++++.+|+ ...+.|.+++++..|++...+..+++.+.+.+.-+ ..+|. .+.|+++|++..||.|-+
T Consensus 7 ~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd---G~~l~--~~~Tp~~l~medgD~Idv 77 (79)
T 3a4r_A 7 ELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD---GTKLS--GKELPADLGLESGDLIEV 77 (79)
T ss_dssp CEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET---TEECC--SCCCHHHHTCCTTCEEEE
T ss_pred EEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC---CEEcC--CCCCHHHcCCCCCCEEEE
Confidence 478999999994 57899999999999999999999998877665443 23454 567999999999999876
No 58
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=96.66 E-value=0.0045 Score=55.28 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=60.7
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceee-ecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALF-KQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~-~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
|.|.|++..|..+.+++++++++.+|.++|....+++.+...|. ...+ ..+. ++.+|++.|+++|+.|++...
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g--~~L~--d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSG--VALQ--DRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTC--CBCC--TTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCC--CCCC--CCCCHHHcCCCCCCEEEEEcc
Confidence 67889999997889999999999999999999999998777665 4222 2343 678999999999999999754
No 59
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.66 E-value=0.0051 Score=51.94 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=60.5
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
.|.|+|++.+|....++|.+++++..|++++.+..+++.+.+.+.-+ ..+|. .+.|+++|++..||.|-+..
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd---G~~l~--~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQPIN--ETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEECC--TTCCTTTTTCCTTCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC---CEEcC--CCCCHHHcCCCCCCEEEEEE
Confidence 58899999999778999999999999999999999998877665443 23454 56799999999999988764
No 60
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.65 E-value=0.0048 Score=56.12 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=61.4
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
-|.|.|++.+|..+.|+|++++++.+|.++|....+++.+.+.|... ...+. ++.+|+++|+++|+.|+|...
T Consensus 20 ~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~---g~~L~--d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 20 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp CEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEECC--TTCBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC---Ccccc--ccCCHhHcCCcccceeeeeec
Confidence 38889999999788999999999999999999999999877777543 13344 478999999999999999753
No 61
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=96.64 E-value=0.0083 Score=57.98 Aligned_cols=77 Identities=25% Similarity=0.397 Sum_probs=58.3
Q ss_pred cCHHHHHHHHHHHHhc---CceeeEEEEEEEeeCCCCCccceEEEEEEecCCCCCCCCceEEcCCCChHHHHHHHHhcCC
Q psy8916 420 ENRTLVERFLEYWRVT---GHQRLGLLYGKYQLHPDVPLGIKAVVAAIYEPPQESSRDKIKLLPDPKAEVVEEIASSLGL 496 (520)
Q Consensus 420 ~~~~~v~~Fi~~wr~~---g~QR~G~LYG~Y~~~~~vPlGikAvVeAIYEPPQ~~~~dg~~ll~d~~e~~Vd~iA~~LGL 496 (520)
-..++++.|+.-=+.. +.+-+|+|||+.... . -.|..|+.|||.++.+.+.+... ++.. +....-||
T Consensus 46 Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~-~------~~I~~v~~ppq~gt~~~v~~~~~--~e~~-~~~~~~~l 115 (211)
T 3rzv_A 46 VPGRLCPQFLQLASANTARGVATCGILCGKLMRN-E------FTITHVLIPKQSAGSDYCNTENE--EELF-LIQDQQGL 115 (211)
T ss_dssp EETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETT-E------EEEEEEEECCEEECSSCEEECCH--HHHH-HHHHHHTC
T ss_pred ECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCC-C------EEEEEEEeCCccCCCCceeccCh--HHHH-HHHhhCCC
Confidence 3456999999988773 479999999997632 1 37889999999999998877532 1222 33345799
Q ss_pred eEEEEEEecC
Q psy8916 497 TQVGWIFTDL 506 (520)
Q Consensus 497 ~rVG~IFTdl 506 (520)
+.||||=||-
T Consensus 116 ~~vGWyHSHP 125 (211)
T 3rzv_A 116 ITLGWIHTHP 125 (211)
T ss_dssp EEEEEEEECT
T ss_pred EEEEEEeCCC
Confidence 9999999985
No 62
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=96.62 E-value=0.0059 Score=49.97 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=52.4
Q ss_pred eCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 179 QSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 179 RSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
++-.|..+.|++++++++.+|.++|.+..+++.+.+.|..+ ...|. ++.+|+++|+++|+.|+|.
T Consensus 17 ~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~L~--D~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 17 VKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK---GKVLV--ETSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp EEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET---TEECC--TTCBTTTTTCCTTEEEEEE
T ss_pred EEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC---CeECC--CcCCHHHCCCCCCCEEEEE
Confidence 33456578899999999999999999999999887777543 12343 5689999999999999986
No 63
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.58 E-value=0.0026 Score=55.16 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=56.7
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCC---------------cceeeecCCccccccccccccccccC
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTY---------------NFALFKQRNKTDEIFSSRDQTIASVG 238 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~d---------------sftL~~nr~~~~~l~s~~~~tv~~lg 238 (520)
|.|.|++-+|..+-|+|++++++.+|.++|...++++.+ .+.|..+ +....-++++|++.|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~----Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSA----GEKLTEDRKKLRDYG 83 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESS----SCEECCSSSBHHHHT
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeC----CcCccCCcCCHHHcC
Confidence 889999999988899999999999999999999876542 2345421 222222468999999
Q ss_pred CCCcCeEEEee
Q psy8916 239 LSNGDFVYMMN 249 (520)
Q Consensus 239 LkHGDmlyl~~ 249 (520)
+++||.|.+.-
T Consensus 84 I~~g~~l~lv~ 94 (105)
T 1v2y_A 84 IRNRDEVSFIK 94 (105)
T ss_dssp CCSSEEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 99999999874
No 64
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0055 Score=53.02 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=58.0
Q ss_pred eeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 175 ILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 175 iIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
.|.+++-.|..+.+++++++++.+|.++|.+..+++.+.+.|..+ ...|. ++.+|+++|+++|+.|+|...
T Consensus 11 ~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~L~--D~~tL~~ygI~~gstI~l~~~ 81 (114)
T 2kdi_A 11 QIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA---GKQLE--DGRTLSDYNIQRESTLHLVLR 81 (114)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEECC--TTCBTTTTTCCSSCEEEEEEC
T ss_pred EEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC---CEECC--CCCcHHHCCCCCCCEEEEEEE
Confidence 355677778788999999999999999999999999887777543 12343 578999999999999999754
No 65
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=96.53 E-value=0.0031 Score=63.18 Aligned_cols=81 Identities=19% Similarity=0.344 Sum_probs=58.1
Q ss_pred eeecCHHHHHHHHHHHHhcCceeeEEEEEEEeeCCCCCccceEEEEEEecCCCCCCCCceEEcCC-CChHHHHHHHHhcC
Q psy8916 417 VEFENRTLVERFLEYWRVTGHQRLGLLYGKYQLHPDVPLGIKAVVAAIYEPPQESSRDKIKLLPD-PKAEVVEEIASSLG 495 (520)
Q Consensus 417 vef~~~~~v~~Fi~~wr~~g~QR~G~LYG~Y~~~~~vPlGikAvVeAIYEPPQ~~~~dg~~ll~d-~~e~~Vd~iA~~LG 495 (520)
.-+...+++.+||. -..-..|=+|||||.-.++..- + -.|..|--|||.|+.+.+++..- |..+. .-+
T Consensus 40 t~vlPknllkkFi~-IADlrTq~~G~LyG~s~~d~~~---v-keI~~ivipPQ~gt~~sv~~~~~~p~~~~------l~d 108 (273)
T 2p8r_A 40 TYILPKNILKKFIT-ISDLRTQIAGFMYGVSPPDNPQ---V-KEIRCIVLVPQTGSHQQVNLPTQLPDHEL------LRD 108 (273)
T ss_dssp EEEEEHHHHHHHHH-TSCSSSCCEEEEEEECCTTCTT---E-EEEEEEECCSBEECSSCEECCSSCCCCTT------TTT
T ss_pred EEEecHHHHHHHHH-HhhccceEEEEEeccCCCCCCC---e-EEEEEEEECCccCCCceEECCCcCcchhh------hcc
Confidence 44567789999998 3345679999999996544322 1 24666777999999999998632 22222 189
Q ss_pred CeEEEEEEecCcc
Q psy8916 496 LTQVGWIFTDLVA 508 (520)
Q Consensus 496 L~rVG~IFTdl~~ 508 (520)
|+.+|||-|+-+.
T Consensus 109 Le~LGWIHTqp~e 121 (273)
T 2p8r_A 109 FEPLGWMHTQPNE 121 (273)
T ss_dssp SEEEEEEEEESSC
T ss_pred ccccceEeeCCCC
Confidence 9999999998653
No 66
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.43 E-value=0.012 Score=48.51 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=56.5
Q ss_pred eeeeeeCCCcc--eeeEEecCCcchHHHHHHHHhhc--CCCCCcceeeecCCcccccccccccccccc--CCCCcCeEEE
Q psy8916 174 KILRIQSPVGI--VKRININRSDTCKDLFEKINKEF--ELNTYNFALFKQRNKTDEIFSSRDQTIASV--GLSNGDFVYM 247 (520)
Q Consensus 174 MiIRfRSkdG~--m~RVev~ptDtfs~LleKLl~~f--~ls~dsftL~~nr~~~~~l~s~~~~tv~~l--gLkHGDmlyl 247 (520)
|.|.|++..|. .+.|++++++++.+|.++|.+.. +++.+.+.|... .+.|. ++.+|+++ |+++|+.|.|
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~---Gk~L~--D~~tL~~~~~~i~~~~~i~l 82 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS---GKLLL--DHQCLRDLLPKQEKRHVLHL 82 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET---TEECC--SSSCHHHHSCSSSCSEEEEE
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC---CEECc--CcCCHHHHhcCCCCCCEEEE
Confidence 67888898884 36677779999999999999998 888877776543 12343 46799999 9999999998
Q ss_pred ee
Q psy8916 248 MN 249 (520)
Q Consensus 248 ~~ 249 (520)
..
T Consensus 83 v~ 84 (93)
T 1wgd_A 83 VC 84 (93)
T ss_dssp EC
T ss_pred Ee
Confidence 63
No 67
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.0045 Score=61.47 Aligned_cols=82 Identities=21% Similarity=0.342 Sum_probs=58.8
Q ss_pred eeecCHHHHHHHHHHHHhcCceeeEEEEEEEeeCC-CCCccceEEEEEEecCCCCCCCCceEEcCCCCh-HHHHHHHHhc
Q psy8916 417 VEFENRTLVERFLEYWRVTGHQRLGLLYGKYQLHP-DVPLGIKAVVAAIYEPPQESSRDKIKLLPDPKA-EVVEEIASSL 494 (520)
Q Consensus 417 vef~~~~~v~~Fi~~wr~~g~QR~G~LYG~Y~~~~-~vPlGikAvVeAIYEPPQ~~~~dg~~ll~d~~e-~~Vd~iA~~L 494 (520)
.-+...+++.+||. -..-..|-+|||||.-..+. .| -.|-.|--|||.|+.|.+++..-..+ +..| .-
T Consensus 39 t~vlPknLlkkFi~-IAD~~Tq~cG~LyG~~~~d~~~v-----~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~----l~ 108 (254)
T 2og4_A 39 VYVLPKNLLKKFIE-ISDVKIQVAAFIYGMSAKDHPKV-----KEIKTVVLVPQLGHVGSVQISNIPDIGDLPD----TE 108 (254)
T ss_dssp EEEEEHHHHHHHHH-TSCSSSCCEEEEEEEECSSCTTE-----EEEEEEECCCEEEETTEEEECCCCCCTTSTT----CT
T ss_pred EEEcCHHHHHHHHH-HhhccceEEEEEEccCCCCCCCe-----EEEEEEEECCccCCCceEECCCcCccccchh----hc
Confidence 34556689999998 33456799999999965443 22 24778889999999999998632211 1111 37
Q ss_pred CCeEEEEEEecCcc
Q psy8916 495 GLTQVGWIFTDLVA 508 (520)
Q Consensus 495 GL~rVG~IFTdl~~ 508 (520)
+|+.+|||-|+-+.
T Consensus 109 dLe~LGWIHTqptq 122 (254)
T 2og4_A 109 GLELLGWIHTQTEE 122 (254)
T ss_dssp TCEEEEEEEEESSC
T ss_pred CCEecceEeeCCCC
Confidence 99999999998643
No 68
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=96.35 E-value=0.0097 Score=49.99 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=60.2
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
.+.|++++.+|....+.|.+++++..|++...+..+++.+.+.+.-+ ..+|. .+.|+++|++..||.|-+..
T Consensus 17 ~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd---G~~l~--~~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQPIN--ETDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET---TEECC--TTCCTTTTTCCTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEEC---CEEcC--CCCCHHHcCCCCCCEEEEEe
Confidence 58999999999668899999999999999999999999877665443 23454 56799999999999988753
No 69
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.34 E-value=0.0073 Score=50.49 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=54.9
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
.|.|+|+.... ++.|++++++++.+|.++|....+++.+.+.|.... +.+ .+.+|+++||+.|+.|+|.
T Consensus 17 ~~~i~Vk~~g~-~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~G---k~L---dd~tL~~~~i~~g~~i~lv 85 (95)
T 1v86_A 17 LVDLKIIWNKT-KHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKG---LVP---EDKTLREIKVTSGAKIMVV 85 (95)
T ss_dssp CEEEEEEETTE-EEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSS---BCC---SSSBHHHHCCCTTEEEEEC
T ss_pred eEEEEEEECCE-EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECC---eeC---CcCcHHHCCCCCCCEEEEE
Confidence 36677776544 889999999999999999999999998777665321 123 3559999999999999985
No 70
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.34 E-value=0.012 Score=50.69 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=54.9
Q ss_pred eeeeeCCC----cceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 175 ILRIQSPV----GIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 175 iIRfRSkd----G~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
-|+|+.++ |+++-|+|++++++.+|.++|.+.++++.+.+.|..+ .+.|. +++||++.||++|+.|.+-
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~---GKiL~--D~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN---KKQLQ--LGKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET---TEECC--TTSBHHHHTCCSSEEEEEE
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC---CeECC--CCCcHHHcCCCCCCEEEEE
Confidence 46666777 6678999999999999999999999999877766432 22343 5789999999999998544
No 71
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.33 E-value=0.011 Score=51.03 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=60.4
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
.+.|+|++.+|....+.|.+++++..|++...+..+++.+.+.+.-+ ..+|. .+.|+.+|+|..||.|.+..
T Consensus 24 ~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd---G~~l~--~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 24 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQPIN--ETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS---SSBCC--TTSCTTTTTCCTTEEEEECC
T ss_pred eEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC---CEEcC--CCCCHHHcCCCCCCEEEEEE
Confidence 58999999999668899999999999999999999998876655443 23454 56799999999999998863
No 72
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=96.32 E-value=0.00061 Score=59.91 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=0.0
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.|.|++.+|.++.|++++++++.+|.++|.+..+++.+.+.|..+ ...|. ++.+|+++|+++|+.|+|..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~L~--D~~tL~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKESTLHLVL 71 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC---CEECC--CCCchhhhccCCCCEEEEEE
Confidence 5678889998788999999999999999999999998876666532 12343 57899999999999999863
No 73
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=96.30 E-value=0.011 Score=50.89 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=57.0
Q ss_pred eeeeeeCC----------CcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcC
Q psy8916 174 KILRIQSP----------VGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGD 243 (520)
Q Consensus 174 MiIRfRSk----------dG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGD 243 (520)
..|+|++| .|+++.|+|++++++.+|.++|....+++.+.+.|... ...+. ++.+|+++|+++|+
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~---Gk~L~--D~~tL~~y~i~~g~ 100 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE---GIFIK--DSNSLAYYNMASGA 100 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET---TEEEC--TTSBHHHHTCCSSC
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC---CEECC--CCCCHHHCCCCCCC
Confidence 45556665 36678899999999999999999999999877776543 12343 56899999999999
Q ss_pred eEEEeec
Q psy8916 244 FVYMMNL 250 (520)
Q Consensus 244 mlyl~~~ 250 (520)
.|+|...
T Consensus 101 ~i~lv~r 107 (115)
T 1we7_A 101 VIHLALK 107 (115)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 9999753
No 74
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.12 E-value=0.013 Score=53.23 Aligned_cols=70 Identities=11% Similarity=0.170 Sum_probs=57.9
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
|.+.|++.+|.++-+++++++++.+|.++|....+++.+.+.|..+ ...+. ++.+|+++|+++|+.|+|.
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~---g~~L~--D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET---TEECC--TTSBSGGGTCCTTCEEEEC
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC---CccCC--CCCcHHHhCCCCCCEEEEE
Confidence 4566778889889999999999999999999999998877766543 23343 5789999999999999985
No 75
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.07 E-value=0.026 Score=46.16 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=53.3
Q ss_pred eeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCcccccc-ccccccccccCCCCcCeEEEe
Q psy8916 175 ILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIF-SSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 175 iIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~-s~~~~tv~~lgLkHGDmlyl~ 248 (520)
.|+||-|+|....-....++++.+|++-|.. .+.+..+|.|...-. ...+. .-.++||.++||.+++.|+|.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fP-rk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFP-RRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSS-CCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCC-CCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5899999993344567799999999998876 455566788765422 22342 234789999999999999986
No 76
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.03 E-value=0.019 Score=48.85 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=56.3
Q ss_pred eeeeeeCCCc---ceeeEE--------ecCC-cchHHHHHHHHhhc--CCCCCc-ceeeecCCccccccccccccccccC
Q psy8916 174 KILRIQSPVG---IVKRIN--------INRS-DTCKDLFEKINKEF--ELNTYN-FALFKQRNKTDEIFSSRDQTIASVG 238 (520)
Q Consensus 174 MiIRfRSkdG---~m~RVe--------v~pt-Dtfs~LleKLl~~f--~ls~ds-ftL~~nr~~~~~l~s~~~~tv~~lg 238 (520)
|.|.|++..| ..+.|+ |+++ +++.+|.++|.... +++.+. +.|... .+.|. ++++|+++|
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~---Gk~L~--D~~tL~~y~ 87 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC---GRKLK--DDQTLDFYG 87 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET---TEECC--TTCBHHHHT
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC---CeECC--CCCcHHHcC
Confidence 6778888777 678888 5554 99999999999999 898877 666532 12343 568999999
Q ss_pred CCCcCeEEEeec
Q psy8916 239 LSNGDFVYMMNL 250 (520)
Q Consensus 239 LkHGDmlyl~~~ 250 (520)
+++|+.|+|...
T Consensus 88 i~~g~~i~lv~~ 99 (107)
T 1x1m_A 88 IQPGSTVHVLRK 99 (107)
T ss_dssp CCTTCEEEEEES
T ss_pred CCCCCEEEEEeC
Confidence 999999999743
No 77
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=96.02 E-value=0.011 Score=48.83 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=54.9
Q ss_pred eeeeeeCCCcceeeE-EecCCcchHHHHHHHHhhcCCCCCcceeeecCCccc-cccccccccccccCCCCcCeEEEe
Q psy8916 174 KILRIQSPVGIVKRI-NINRSDTCKDLFEKINKEFELNTYNFALFKQRNKTD-EIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 174 MiIRfRSkdG~m~RV-ev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~-~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
|.|+|+.. |..+.| ++++++++.+|.++|.+..+++.+...|.. ...++ .+. ++.+|+++||+.|+.|.|.
T Consensus 8 m~i~Vk~~-g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~-~k~~Gk~L~--D~~~L~~~~i~~g~~l~l~ 80 (90)
T 1v5t_A 8 LPIIVKWG-GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLG-LKVKGKPAE--NDVKLGALKLKPNTKIMMM 80 (90)
T ss_dssp CCEEEEET-TEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEES-CEETTEECC--TTSBHHHHTCCTTEEEEEE
T ss_pred EEEEEEEC-CEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEe-eccCCcCcC--CCCCHHHcCCCCCCEEEEE
Confidence 55667764 447889 999999999999999999999988777751 10122 233 4679999999999999986
No 78
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.01 E-value=0.013 Score=49.25 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=54.1
Q ss_pred eeeeeeCCCccee-eEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 174 KILRIQSPVGIVK-RININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 174 MiIRfRSkdG~m~-RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
|.|+|+.. |..+ -|++++++++.+|.++|.+..+++.+.+.|..+ .+.+. ++ +|+++||+.|+.|+|.
T Consensus 8 m~i~Vk~~-g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~---Gk~L~--D~-tL~~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 8 YSVTVKWG-KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVK---GGTLK--DD-DWGNIKMKNGMTVLMM 76 (96)
T ss_dssp EEEEEEET-TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEET---TEECC--SS-CCCSCCCCSSCEEECC
T ss_pred EEEEEEEC-CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC---CcCCC--CC-CHHHCCCCCCCEEEEE
Confidence 66778764 4377 599999999999999999999999877766532 12343 34 9999999999999986
No 79
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.94 E-value=0.016 Score=49.42 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=52.4
Q ss_pred eeeeeeCCCcc--eeeEEecCCcchHHHHHHHHhhc--CCCCCcceeeecCCcccccccccccccccc--CCCCcCeEEE
Q psy8916 174 KILRIQSPVGI--VKRININRSDTCKDLFEKINKEF--ELNTYNFALFKQRNKTDEIFSSRDQTIASV--GLSNGDFVYM 247 (520)
Q Consensus 174 MiIRfRSkdG~--m~RVev~ptDtfs~LleKLl~~f--~ls~dsftL~~nr~~~~~l~s~~~~tv~~l--gLkHGDmlyl 247 (520)
|.|.|++..|. ...|++++++++.+|.++|.+.+ .++.+.+.|... .+.|. ++++|+++ |++.|+.|.|
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~---Gk~L~--D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS---GRLLP--DHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET---TEEEC--TTSBTHHHHTTTCSEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC---CEECC--CCCCHHHHhcCCCCCCEEEe
Confidence 78899999993 24788899999999999999976 333355555431 12343 57899999 9999999887
No 80
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.92 E-value=0.016 Score=48.15 Aligned_cols=72 Identities=7% Similarity=0.077 Sum_probs=54.5
Q ss_pred eeeeeeeCCCcceee---E-EecCCcchHHHHHHHHhh-cCCCCCcceeeecCCccccccccccccccccCCCCcCeEEE
Q psy8916 173 YKILRIQSPVGIVKR---I-NINRSDTCKDLFEKINKE-FELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247 (520)
Q Consensus 173 YMiIRfRSkdG~m~R---V-ev~ptDtfs~LleKLl~~-f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl 247 (520)
+|-|.|++..| ... | +++|++++.+|.++|.+. -+++.+...|..... ...|. ++.+|+++|++.|+.||+
T Consensus 10 ~M~I~Vk~~~g-~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~-Gk~L~--D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKT-REKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPK-GKSLK--DEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSS-CCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTT-SCCCC--TTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCC-CEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCC-CcCcC--CCCCHHHcCCCCCCEEEE
Confidence 68899999988 343 6 999999999999999995 567665555533221 22343 578999999999999998
Q ss_pred e
Q psy8916 248 M 248 (520)
Q Consensus 248 ~ 248 (520)
.
T Consensus 86 K 86 (88)
T 2dzj_A 86 R 86 (88)
T ss_dssp C
T ss_pred E
Confidence 5
No 81
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=95.88 E-value=0.031 Score=47.56 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=55.0
Q ss_pred eeeeeeCCCcceeeE--EecCCcchHHHHHHH-HhhcCCCCCcceeeecCCccccccccccccccccCC-CCcCeEEEee
Q psy8916 174 KILRIQSPVGIVKRI--NINRSDTCKDLFEKI-NKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGL-SNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~RV--ev~ptDtfs~LleKL-l~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgL-kHGDmlyl~~ 249 (520)
|.|.|++..|+.+.+ ++++++++.+|.++| ....+++.+.+.|... .+.|. .+.+|+++|+ +.|+.|.|.-
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~---Gk~L~--D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK---GKVLH--DNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET---TEEEC--TTCBGGGSCCBTTBCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC---CEECc--CcCCHHHcCcCCCCCEEEEEE
Confidence 788899999955666 555999999999999 7777888776666532 22344 5689999999 9999998863
No 82
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=95.87 E-value=0.013 Score=51.14 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=61.3
Q ss_pred ceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 172 FYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 172 fYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
-.+.|+|++.+|....+.|.+++++..|++...+..+++.+.+.+.-+ ..+|. .+.|+++|++..||+|-+..
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd---G~~L~--~~~Tp~dl~mEDgD~Idv~~ 97 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD---GTPID--ETKTPEELGMEDDDVIDAMV 97 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS---SCBCC--SSSHHHHHHCSSEEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC---CEEcC--CCCCHHHcCCCCCCEEEEEE
Confidence 468999999999778999999999999999999999998877765443 23454 56799999999999998864
No 83
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=95.87 E-value=0.021 Score=49.58 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=60.4
Q ss_pred ccceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 170 DVFYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 170 ~vfYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
+--++.|+|++ +|+...+.|.+++++..|++...+..+++...+.+.-+ ..+|. .+.|+++|++..||+|-+.
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd---G~rl~--~~~Tp~dl~medgD~Idv~ 100 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIRIQ--ADQTPEDLDMEDNDIIEAH 100 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEECC--TTCCTTTTTCCTTEEEEEE
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC---CeEcC--CCCCHHHcCCCCCCEEEEE
Confidence 34579999999 99778899999999999999999999998777665433 23454 5679999999999998875
No 84
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.80 E-value=0.053 Score=45.11 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=55.8
Q ss_pred eeeeeeCC---CcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCC-cc-ccc-cccccccccccCCCCcCeEEE
Q psy8916 174 KILRIQSP---VGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRN-KT-DEI-FSSRDQTIASVGLSNGDFVYM 247 (520)
Q Consensus 174 MiIRfRSk---dG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~-~~-~~l-~s~~~~tv~~lgLkHGDmlyl 247 (520)
..|+|+++ +|...-+.+.++.++.+|..+|...++++.....|+...+ .. ..+ .....++|+..|+..||+|+|
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 34556654 5645566788999999999999999999988777654321 11 122 234678999999999999999
Q ss_pred ee
Q psy8916 248 MN 249 (520)
Q Consensus 248 ~~ 249 (520)
.-
T Consensus 90 ~d 91 (97)
T 1wjn_A 90 RW 91 (97)
T ss_dssp EC
T ss_pred Ee
Confidence 73
No 85
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.77 E-value=0.039 Score=47.28 Aligned_cols=72 Identities=10% Similarity=0.172 Sum_probs=55.8
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
+++++.-..+ .+-|++++++++.+|.++|.+..+++.+...|.--+.. .+. ++++|+++||+.|+.|++...
T Consensus 10 ~~~~vk~~Gk-~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~g--kL~--D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 10 LDFRVEYRDR-NVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTG--DVE--DSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEECSSC-EEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSS--CCC--TTSBHHHHCCCSEEEEEECCS
T ss_pred EEEEEEeCCe-EEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCC--CCC--CcCCHHHcCCCCCCEEEEEec
Confidence 4456666556 88999999999999999999999999876655321222 243 578999999999999999643
No 86
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=95.72 E-value=0.025 Score=57.44 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=59.6
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
-|.|.|++..|+.+.|++++++++.+|.++|.+..+++.+.+.|... ...|. ++++|+++|+++|+.|+|.
T Consensus 233 ~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~---Gk~L~--D~~TLsdygI~~gstL~Lv 303 (307)
T 3ai5_A 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQLE--DGRTLSDYNIQKESTLHLV 303 (307)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEECC--TTSBTGGGTCCTTCEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC---CeecC--CCCCHHHcCCCCCCEEEEE
Confidence 36788999988788899999999999999999999999877776543 12343 5789999999999999986
No 87
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.62 E-value=0.068 Score=46.15 Aligned_cols=76 Identities=11% Similarity=0.075 Sum_probs=58.7
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccc-cccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFS-SRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s-~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
-.|+||-|||....-....++++.+|++-|....+.....|.|...-.. +.+.. -.++||.++||.+...|++...
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPr-k~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPR-REFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSC-CBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCC-cCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 5799999999445667789999999999998887766667888764222 23432 3578999999999999999754
No 88
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.02 Score=47.66 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=56.4
Q ss_pred eeeeeeCCCcceeeEEec--CCcchHHHHHHH-HhhcCCCCCcceeeecCCccccccccccccccccCC-CCcCeEEEe
Q psy8916 174 KILRIQSPVGIVKRININ--RSDTCKDLFEKI-NKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGL-SNGDFVYMM 248 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~--ptDtfs~LleKL-l~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgL-kHGDmlyl~ 248 (520)
|.|.|++..|.++.|+++ +++++.+|.++| ....+++.+.+.|... .+.|. ++.+|+++|+ +.|..|.|.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~---Gk~L~--D~~tL~~y~I~~~~stl~v~ 75 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK---GKVLH--DNLFLSDLKVTPANSTITVM 75 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET---TEECC--TTCBHHHHCCCGGGCEEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC---CEECc--CcCCHHHcCCCCCCCEEEEE
Confidence 678899999956788766 999999999999 8888988887776542 22344 5679999999 699999986
No 89
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.58 E-value=0.062 Score=44.60 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=53.7
Q ss_pred eeeeeCCCc-ceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCcccccc--ccccccccccCCCCcCeEEEe
Q psy8916 175 ILRIQSPVG-IVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIF--SSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 175 iIRfRSkdG-~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~--s~~~~tv~~lgLkHGDmlyl~ 248 (520)
-|.|.+..+ +..-+++++++++.+|.++|....+++.+...|.........+. .-++++|++.|++.|+.|+|.
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 345555433 13667899999999999999999999988777754321111111 125789999999999999997
No 90
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=95.55 E-value=0.034 Score=49.49 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=56.2
Q ss_pred eeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCC-------cCeEEE
Q psy8916 175 ILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSN-------GDFVYM 247 (520)
Q Consensus 175 iIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkH-------GDmlyl 247 (520)
+||+|...- +.-+++++++++..|.++|....+++.+...|..+ .+.+. +++||++.|+++ |+.|+|
T Consensus 4 Fl~Ikr~kt-TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~---Gk~Le--D~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 4 FLMIRRHKT-TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD---DQLLD--DGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp EEEEEEBTE-EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET---TEECC--TTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred EEEEecCCE-EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC---CeECC--CcCCHHHcCCCcCcccCCCCCEEEE
Confidence 344444454 67789999999999999999999999887777642 12343 578999999999 999999
Q ss_pred eecC
Q psy8916 248 MNLS 251 (520)
Q Consensus 248 ~~~~ 251 (520)
.+..
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9875
No 91
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=95.54 E-value=0.037 Score=48.12 Aligned_cols=78 Identities=13% Similarity=0.142 Sum_probs=58.4
Q ss_pred cccccceeeeeeeCCC---cceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCC-CCc
Q psy8916 167 YVPDVFYKILRIQSPV---GIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGL-SNG 242 (520)
Q Consensus 167 yvp~vfYMiIRfRSkd---G~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgL-kHG 242 (520)
|=+.=+-|-+.|.... + +..++++|++++..|.++|.+.++++.+...+... +.+. .+++||++.|+ +.|
T Consensus 18 ~~~~~i~l~v~v~d~~s~~~-~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~g----gkll-~D~~TL~~ygI~~~G 91 (105)
T 4dbg_A 18 SPTQDIRLWVSVEDAQMHTV-TIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIG----QRLA-RDQETLHSHGVRQNG 91 (105)
T ss_dssp --CCCEEEEEEEEESSSCCE-EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET----TEEE-CTTCBTGGGTCCSTT
T ss_pred CCCCcEEEEEEEEccCCCCc-eEEEEECCcChHHHHHHHHHHHhCCCHHHEEEecc----CeEc-cCcCcHHHcCCCCCC
Confidence 4444455777777766 5 88999999999999999999999999876555421 2222 25789999999 599
Q ss_pred CeEEEeec
Q psy8916 243 DFVYMMNL 250 (520)
Q Consensus 243 Dmlyl~~~ 250 (520)
+-|||--.
T Consensus 92 ~t~hL~l~ 99 (105)
T 4dbg_A 92 DSAYLYLL 99 (105)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEE
Confidence 99998643
No 92
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=95.36 E-value=0.035 Score=49.29 Aligned_cols=71 Identities=14% Similarity=0.083 Sum_probs=57.7
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCC-------CcCeEE
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLS-------NGDFVY 246 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLk-------HGDmly 246 (520)
|.||+|...- ++-++|++++++..|.++|....+++.+...|..+. +.|. ++++|++.|++ .+..|+
T Consensus 3 mfl~ir~~kt-ti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~G---k~Le--D~~TLsdy~I~~~~a~~q~~stL~ 76 (118)
T 2fnj_B 3 VFLMIRRHKT-TIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDD---QLLD--DGKTLGECGFTSQTARPQAPATVG 76 (118)
T ss_dssp EEEEEEEBTE-EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETT---EECC--TTSBHHHHTCCTTTSBTTBCEEEE
T ss_pred EEEEEecCCE-EEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECC---eECC--CCCCHHHcCcccccccCCCCCEEE
Confidence 5677766554 678999999999999999999999998887776431 2343 67899999999 799999
Q ss_pred Eeec
Q psy8916 247 MMNL 250 (520)
Q Consensus 247 l~~~ 250 (520)
|...
T Consensus 77 L~lr 80 (118)
T 2fnj_B 77 LAFR 80 (118)
T ss_dssp EEEB
T ss_pred EEec
Confidence 9876
No 93
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.043 Score=59.26 Aligned_cols=84 Identities=23% Similarity=0.367 Sum_probs=59.9
Q ss_pred CeeeecCHHHHHHHHHHHHhcCceeeEEEEEEEeeC-CCCCccceEEEEEEecCCCCCCCCceEEcCCCChHHHHHHHHh
Q psy8916 415 DNVEFENRTLVERFLEYWRVTGHQRLGLLYGKYQLH-PDVPLGIKAVVAAIYEPPQESSRDKIKLLPDPKAEVVEEIASS 493 (520)
Q Consensus 415 Dhvef~~~~~v~~Fi~~wr~~g~QR~G~LYG~Y~~~-~~vPlGikAvVeAIYEPPQ~~~~dg~~ll~d~~e~~Vd~iA~~ 493 (520)
...-+...+++.+||. -..-..|=+|||||.=.++ +.| -.|..|--|||.|+.+++++..-+..+.-+. .
T Consensus 348 ~~tyVlPkNLLkKFI~-IADlrTQicGyLyG~sp~dn~nV-----kEI~cIVipPQ~Gt~~sv~lp~lp~he~~~~---l 418 (565)
T 3sbg_A 348 QNVYVLPKNLLKKFIE-ISDVKIQVAAFIYGMSAKDHPKV-----KEIKTVVLVPQLGHVGSVQISNIPDIGDLPD---T 418 (565)
T ss_dssp SCEEEEEHHHHHHHHH-HSCSSSCCEEEEEEEEETTEEEE-----EEEEEEECCCEEECSSCEEECCCCCCTTSTT---C
T ss_pred CcEEEccHHHHHHHHH-HhhccceeEEEEecCCCCCCCCe-----EEEEEEEECCccCCCceEECCCCCccccccc---c
Confidence 3455678899999998 3455679999999995544 232 3677788899999999999872222220001 3
Q ss_pred cCCeEEEEEEecCc
Q psy8916 494 LGLTQVGWIFTDLV 507 (520)
Q Consensus 494 LGL~rVG~IFTdl~ 507 (520)
=+|+.+|||-|+-+
T Consensus 419 ~dLe~LGWIHTqp~ 432 (565)
T 3sbg_A 419 EGLELLGWIHTQTE 432 (565)
T ss_dssp TTCEEEEEEEEESS
T ss_pred ccCEecceeeecCC
Confidence 68999999999754
No 94
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=95.20 E-value=0.054 Score=45.74 Aligned_cols=73 Identities=10% Similarity=0.068 Sum_probs=54.1
Q ss_pred eeeeeCCCc--ceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccc--cccccccccccccCCCCcCeEEEe
Q psy8916 175 ILRIQSPVG--IVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTD--EIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 175 iIRfRSkdG--~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~--~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
-|.|.+..+ +..-+++++++++..|.++|....+++.+...|....+.+. .+ .-++++|++.|++.|+.|+|.
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L-~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTM-DNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEEC-CCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCccccee-CCCCCCHhHCCcCCCCEEEEE
Confidence 345565554 34667889999999999999999999998777754321111 22 235789999999999999985
No 95
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=95.05 E-value=0.067 Score=46.67 Aligned_cols=76 Identities=9% Similarity=0.057 Sum_probs=55.4
Q ss_pred eeeeeeCCCc-ceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCcccccc--ccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVG-IVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIF--SSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG-~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~--s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
+-|.|.+..+ +..-+++++++++..|.++|....+++.+...|.........+. .-.+++|++.||+.|+.|+|.-
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 3455665544 13567888999999999999999999988777754331112221 1257899999999999999974
No 96
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=94.99 E-value=0.076 Score=46.93 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=59.8
Q ss_pred ceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 172 FYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 172 fYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
-++.|+|++.+|....+.|.+++++..|++...+..+++...+.+.-+ ..+|. .+.|..+|++..||+|-+.
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFD---G~rI~--~~~TP~dL~MEDgD~IdV~ 110 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE---GQRIA--DNHTPKELGMEEEDVIEVY 110 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEET---TEECC--TTCCTTTTTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEEC---CeECC--CCCCHHHcCCCCCCEEEEE
Confidence 378899999999556788999999999999999999999887765443 33455 4679999999999998775
No 97
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.91 E-value=0.091 Score=44.59 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=53.9
Q ss_pred eeeeeCCCc--ceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCcccccc--ccccccccccCCCCcCeEEEe
Q psy8916 175 ILRIQSPVG--IVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIF--SSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 175 iIRfRSkdG--~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~--s~~~~tv~~lgLkHGDmlyl~ 248 (520)
.+.|.+... +..-+++++++++..|.++|....+++.+...|.......+.+. .-.+++|++.|++.|+.|+|.
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 345555433 24667899999999999999999999998777754321112211 235789999999999999986
No 98
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=94.57 E-value=0.085 Score=54.67 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=56.0
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhc---CCCCCcceeeecCCccccccccccccccccCCCCcCeE-EEee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEF---ELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFV-YMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f---~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDml-yl~~ 249 (520)
|.|.|++..|..+.|+|++++++.+|+++|...+ +++.+.+.|... .+.|. ++++|+++||++|+.| .+..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~---GK~L~--D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA---GKILS--DDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS---SSEEC--SSSBTTTTCCCTTSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC---CeecC--CcCCHHHcCCCCCCEEEEEEe
Confidence 7788999988788999999999999999999954 477666666532 22343 5689999999999987 5554
No 99
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.56 E-value=0.19 Score=43.17 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=55.0
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeecC
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNLS 251 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~~ 251 (520)
.-.|+||-|+|....-....++++.+|+.-|... +.....|.|...-. .+.+..-.++||.++||.+..+|+|....
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fP-rk~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFP-RRALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSS-CCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCC-CcCCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 4578999999933344667899999999888754 33445677765421 22343235789999999999999997543
No 100
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.20 E-value=0.19 Score=44.24 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=51.4
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcC--------CCCCcceeeecCCccccccccccccccccCCCCcCeE
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFE--------LNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFV 245 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~--------ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDml 245 (520)
|.|+|++-.|.++-|++++++++.+|.++|.+.++ ++.+.+.|... .+.|. ++++|++.+++.|+.+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~---GK~Le--D~~TL~~y~I~~~~~~ 91 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ---GRFLH--GNVTLGALKLPFGKTT 91 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET---TEEEC--SSCBTTTTTCCSSCEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC---CcCCC--CCCcHHHcCCCCCCce
Confidence 88999998888899999999999999999999542 23444444321 12333 5789999999988763
Q ss_pred EE
Q psy8916 246 YM 247 (520)
Q Consensus 246 yl 247 (520)
.|
T Consensus 92 tl 93 (116)
T 1wgh_A 92 VM 93 (116)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 101
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=93.96 E-value=0.14 Score=43.75 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=57.6
Q ss_pred eeeeeeeCCCcc-eeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEE
Q psy8916 173 YKILRIQSPVGI-VKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247 (520)
Q Consensus 173 YMiIRfRSkdG~-m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl 247 (520)
...|++++++|. ..++.+.+++.+..|++...+..+++...+.+.-+ ..+|. .+.|..+|++..||+|-+
T Consensus 25 ~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FD---G~rI~--~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 25 QLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFD---GTKLS--GRELPADLGMESGDLIEV 95 (97)
T ss_dssp EEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEET---TEECC--SCSCHHHHTCCTTEEEEE
T ss_pred eEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC---CEEcC--CCCCHHHcCCCCCCEEEE
Confidence 578999999993 46899999999999999999999998877665443 33454 567999999999999876
No 102
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=93.68 E-value=0.23 Score=44.13 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=51.3
Q ss_pred ceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCC--------CCcceeeecCCccccccccccccccccCCCCcC
Q psy8916 172 FYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELN--------TYNFALFKQRNKTDEIFSSRDQTIASVGLSNGD 243 (520)
Q Consensus 172 fYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls--------~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGD 243 (520)
-.|.|+|++..|.++-++++|++++.+|.++|.+.++.+ .+.+.|.. .+.+.. ++++|++++++.|+
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy----~GK~Le-D~~TL~~y~I~~~~ 90 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY----QGRFLH-GNVTLGALKLPFGK 90 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES----SSSEEE-SSCBTGGGCCCTTS
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEE----CCcCCC-CCCcHHHcCCCCCC
Confidence 358899999999889999999999999999999865322 33344432 233222 67899999999998
Q ss_pred e
Q psy8916 244 F 244 (520)
Q Consensus 244 m 244 (520)
.
T Consensus 91 ~ 91 (125)
T 2gow_A 91 T 91 (125)
T ss_dssp E
T ss_pred c
Confidence 5
No 103
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=93.59 E-value=0.24 Score=43.82 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=56.4
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCcccccc-ccccccccccCCCCcCeEEEeec
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIF-SSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~-s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
.-.|+||-|||.+..-....++++.+|++-|... +.....|.|...-.. +.+. .-.++||.++||.+...|+|...
T Consensus 43 ~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPr-k~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 43 KAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPR-RKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSC-CEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCC-cCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 4689999999944556677999999999988775 555567888754222 2343 23578999999999888888643
No 104
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=92.86 E-value=0.73 Score=44.44 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=57.4
Q ss_pred cCCCeEEEEEeeccccccCCCceeeeeecCCceeechHHHHHHHhhhhhCCCCCCCCCCCCCCcceeeeeecchhhhhcc
Q psy8916 13 NLGLTQVGWIFTDLVAEDLQLGTVRHTRNIDSHFLSAHECIMAGHLQNLHPNPCRFAPSGYFGSKFVTICVTVNECIMAG 92 (520)
Q Consensus 13 ~lgl~~vG~Iftdl~~~~~~~g~v~~~r~~~s~fls~~E~~~aa~~Q~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (520)
.-||+.||||=|+-... -|||+.++-+.+.+|...|
T Consensus 112 ~~~l~~vGWyHSHP~~~---------------~~pS~~Dl~tq~~~q~~~~----------------------------- 147 (211)
T 3rzv_A 112 QQGLITLGWIHTHPTQT---------------AFLSSVDLHTHCSYQMMLP----------------------------- 147 (211)
T ss_dssp HHTCEEEEEEEECTTSC---------------SCCCHHHHHHHHHHHHHCT-----------------------------
T ss_pred hCCCEEEEEEeCCCCCC---------------CCCCHHHHHHHHHHHhcCC-----------------------------
Confidence 46999999999986433 4899999999999999865
Q ss_pred ccccCCCCCCccCCCCcCCCceEEEEEECCCCCceeeeeEechHHHHHHhhc---CccccCCCCC
Q psy8916 93 HLQNLHPNPCRFAPSGYFGSKFVTICVTGDKDNQVHMEGYQVSNQCMALVRD---GCLIPTKDAP 154 (520)
Q Consensus 93 ~~~~~~~~~~~~~~~g~~~s~fvT~~vsg~~~~~i~~~~yqvS~q~~alv~~---~~~~~~~~~p 154 (520)
+||.+|++.... ++.||..+..+|+.++. .=+.|-...|
T Consensus 148 --------------------~~I~IVvsP~~~---~lgaFrLtp~G~~~~~~c~~~~fhph~~~~ 189 (211)
T 3rzv_A 148 --------------------ESVAIVCSPKFQ---ETGFFKLTDHGLEEISSCRQKGFHPHSKDP 189 (211)
T ss_dssp --------------------TCEEEEEETTTT---EEEEEEECHHHHHHHHHCCCCSSCCCCCSS
T ss_pred --------------------CeEEEEEcCCCC---eeeEEEeccchhhhhhccccCCcccCCCCC
Confidence 347788887643 79999999999985554 2256654433
No 105
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=92.84 E-value=0.24 Score=49.65 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=52.9
Q ss_pred CCCeEEEEEeeccccccCCCceeeeeecCCceeechHHHHHHHhhhhhCCCCCCCCCCCCCCcceeeeeecchhhhhccc
Q psy8916 14 LGLTQVGWIFTDLVAEDLQLGTVRHTRNIDSHFLSAHECIMAGHLQNLHPNPCRFAPSGYFGSKFVTICVTVNECIMAGH 93 (520)
Q Consensus 14 lgl~~vG~Iftdl~~~~~~~g~v~~~r~~~s~fls~~E~~~aa~~Q~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (520)
-+|+.+|||-|+-.. +-|||+.++.+-|++|..|+. |.. +|+|+
T Consensus 107 ~dLe~LGWIHTqp~e---------------~~~LSs~Dl~tH~~~~~~~~~---~~~---------------~e~I~--- 150 (273)
T 2p8r_A 107 RDFEPLGWMHTQPNE---------------LPQLSPQDVTTHAKLLTDNIS---WDG---------------EKTVM--- 150 (273)
T ss_dssp TTSEEEEEEEEESSC---------------CSSCCHHHHHHHHHHHHHCTT---CCT---------------TTCEE---
T ss_pred ccccccceEeeCCCC---------------CCCcCHHHHHHHHHHHhcccc---cCC---------------CceEE---
Confidence 799999999998643 349999999999999999874 210 12222
Q ss_pred cccCCCCCCccCCCCcCCCceEEEEEECCCCCceeeeeEechHHHHHHhhcC
Q psy8916 94 LQNLHPNPCRFAPSGYFGSKFVTICVTGDKDNQVHMEGYQVSNQCMALVRDG 145 (520)
Q Consensus 94 ~~~~~~~~~~~~~~g~~~s~fvT~~vsg~~~~~i~~~~yqvS~q~~alv~~~ 145 (520)
+||-.| .|.+++.||-++..+++--+.+
T Consensus 151 ---------------------Ivcsft---pgs~sl~af~LT~~G~~Wg~~n 178 (273)
T 2p8r_A 151 ---------------------ITCSFT---PGSVSLTAYKLTPSGYEWGKAN 178 (273)
T ss_dssp ---------------------EEEEEE---TTEEEEEEEEECHHHHHHHHHC
T ss_pred ---------------------EEEecC---CCCceeEEEEcChHHhhhhhhc
Confidence 344333 3788999999999988755544
No 106
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=92.58 E-value=0.33 Score=45.24 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=56.9
Q ss_pred cCCCeEEEEEeeccccccCCCceeeeeecCCceeechHHHHHHHhhhhhCCCCCCCCCCCCCCcceeeeeecchhhhhcc
Q psy8916 13 NLGLTQVGWIFTDLVAEDLQLGTVRHTRNIDSHFLSAHECIMAGHLQNLHPNPCRFAPSGYFGSKFVTICVTVNECIMAG 92 (520)
Q Consensus 13 ~lgl~~vG~Iftdl~~~~~~~g~v~~~r~~~s~fls~~E~~~aa~~Q~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (520)
.-||+.|||+=|+-... -|||+..+-.++.+|+..|
T Consensus 79 ~~~l~~vGwyHSHP~~~---------------~~pS~~Dv~tq~~yq~~~~----------------------------- 114 (178)
T 2znr_A 79 QHDLLTLGWIHTHPTQT---------------AFLSSVDLHTHCSYQLMLP----------------------------- 114 (178)
T ss_dssp HHTCEEEEEEEECSSSC---------------SCCCHHHHHHHHHHHHHCT-----------------------------
T ss_pred hCCCEEEEEEeCCCCCC---------------CCCCHHHHHHHHHHHhhcC-----------------------------
Confidence 46999999999986443 3899999999999999654
Q ss_pred ccccCCCCCCccCCCCcCCCceEEEEEECCCCCceeeeeEechHHHHHHhhc---CccccCCCCC
Q psy8916 93 HLQNLHPNPCRFAPSGYFGSKFVTICVTGDKDNQVHMEGYQVSNQCMALVRD---GCLIPTKDAP 154 (520)
Q Consensus 93 ~~~~~~~~~~~~~~~g~~~s~fvT~~vsg~~~~~i~~~~yqvS~q~~alv~~---~~~~~~~~~p 154 (520)
++|.+|++.... .+.||.+...+++++.. .=+.|....|
T Consensus 115 --------------------~~v~iIvsp~~~---~~~afrl~~~g~~~~~~~~~~~f~p~~~~~ 156 (178)
T 2znr_A 115 --------------------EAIAIVCSPKHK---DTGIFRLTNAGMLEVSACKKKGFHPHTKEP 156 (178)
T ss_dssp --------------------TCEEEEEEGGGT---EEEEEEECHHHHHHHHHCCCCSSCCCCCSS
T ss_pred --------------------CEEEEEEcCCCC---cceEEEEECCcEeeecccCCCCcccCCCCC
Confidence 346678888652 27999999999999655 2256644434
No 107
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=92.46 E-value=0.46 Score=39.19 Aligned_cols=62 Identities=8% Similarity=0.065 Sum_probs=48.0
Q ss_pred eeEEecCCcchHHHHHHHHhhcCCCCCcceee-ecCCc--cccccccccccccccCCCCcCeEEEe
Q psy8916 186 KRININRSDTCKDLFEKINKEFELNTYNFALF-KQRNK--TDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 186 ~RVev~ptDtfs~LleKLl~~f~ls~dsftL~-~nr~~--~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
+-+.+++++++..|.+||....+++.+...|. .+.+. .+.+ .-.+++|++.|+++|..|+|.
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~-l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKN-MANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESS-CCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeE-cCCCCCHHHCCCCCCCEEEEE
Confidence 34668999999999999999999998877664 33221 1222 235789999999999999997
No 108
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=91.92 E-value=0.46 Score=42.54 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=48.0
Q ss_pred eeeeeeeCCCccee-eEEecCCcchHHHHHHHHhhcC-----CCC--CcceeeecCCccccccccccccccccCCCCcCe
Q psy8916 173 YKILRIQSPVGIVK-RININRSDTCKDLFEKINKEFE-----LNT--YNFALFKQRNKTDEIFSSRDQTIASVGLSNGDF 244 (520)
Q Consensus 173 YMiIRfRSkdG~m~-RVev~ptDtfs~LleKLl~~f~-----ls~--dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDm 244 (520)
.|.|+||+.+|..+ -++++|++++..|.++|....+ ++. +.+.|... .+.|. +++||++.+++.||.
T Consensus 16 ~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~---GK~Le--D~~TLsdy~I~~~~~ 90 (126)
T 1se9_A 16 QLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA---GKVLE--NSKTVKDYRSPVSNL 90 (126)
T ss_dssp CEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET---TEECC--TTSBGGGGSCCTTSC
T ss_pred cEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC---CeECc--CCCcHHHcCCCcCCc
Confidence 68899999999444 5889999999999999966543 332 23333221 12233 578999999999964
No 109
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=91.63 E-value=0.082 Score=50.37 Aligned_cols=66 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.|.|++.+|.++-|+|++++++.+|.++|....+++.+.+.|+.+ ...|. ++.+|+ +|+.|+|..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~---GK~Le--D~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN---GFIAP--NTELVT-----DDVTYYLSL 66 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEec---CeECC--CCCccc-----CCCEEEEEE
Confidence 5678888889788999999999999999999999999877766532 12343 345655 888888864
No 110
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.42 E-value=0.57 Score=41.72 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=56.2
Q ss_pred eeeeee-CCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEeec
Q psy8916 174 KILRIQ-SPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMNL 250 (520)
Q Consensus 174 MiIRfR-SkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~~ 250 (520)
+-+.|. ++.|-.+-|+++++.++.+|.+++...++++.+.+.|..+ .+.|. ++.||+++|++.|..+.|.-.
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~---GKiLK--D~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS---GKILK--NNETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET---TEEEC--SSCCHHHHSCCSSCEEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC---CeEcC--CcchHHHcCCCCCCEEEEEEe
Confidence 445654 6655367888999999999999999999999987776432 22343 477999999999999999743
No 111
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=91.40 E-value=0.54 Score=42.29 Aligned_cols=77 Identities=17% Similarity=0.340 Sum_probs=57.2
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCC-cceeeecCC-c-------------------------ccc
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTY-NFALFKQRN-K-------------------------TDE 225 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~d-sftL~~nr~-~-------------------------~~~ 225 (520)
++.||||-+||..+++.|+.+.++..+...|...+++.+. .+.|...+. . +..
T Consensus 11 ~r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~k 90 (128)
T 2kc2_A 11 MRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQK 90 (128)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCS
T ss_pred CccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHH
Confidence 5689999999999999999999999999999999999865 334432211 0 111
Q ss_pred ccc-------cccccccccCCCCcCeEEEee
Q psy8916 226 IFS-------SRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 226 l~s-------~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|.. ..++||.+-|+..||.|.|-.
T Consensus 91 L~~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 91 LHTDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CCCSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred hcccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 110 136788888999999988853
No 112
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=91.30 E-value=0.62 Score=39.71 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=57.1
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
|-+-|..++||.++|.|.|+.++.+++++...+|+++.+.+.|..++ +.+. .+..+.-.||-+|..|.+..
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~---k~lD--LSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQR---TVLD--LSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETT---EEES--SSCBHHHHCCCSSCEEEEEC
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCC---Eecc--ccceeEecCCCCCCEEEEEE
Confidence 35667889998899999999999999999999999998877775432 2332 24466778999999999973
No 113
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=90.82 E-value=0.87 Score=49.41 Aligned_cols=68 Identities=21% Similarity=0.358 Sum_probs=53.0
Q ss_pred CCCeEEEEEeeccccccCCCceeeeeecCCceeechHHHHHHHhhhhhCCCCCCCCCCCCCCcceeeeeecchhhhhccc
Q psy8916 14 LGLTQVGWIFTDLVAEDLQLGTVRHTRNIDSHFLSAHECIMAGHLQNLHPNPCRFAPSGYFGSKFVTICVTVNECIMAGH 93 (520)
Q Consensus 14 lgl~~vG~Iftdl~~~~~~~g~v~~~r~~~s~fls~~E~~~aa~~Q~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (520)
=+|+.+|||-|+-... -|||+.++.+-|++=..|| | |+|+
T Consensus 419 ~dLe~LGWIHTqp~et---------------~fLSs~Dl~THakl~~~n~-----------~-~~I~------------- 458 (565)
T 3sbg_A 419 EGLELLGWIHTQTEEL---------------KFMAASEVATHSKLFADKK-----------R-DCID------------- 458 (565)
T ss_dssp TTCEEEEEEEEESSCC---------------SSCCHHHHHHHHHHHSSSC-----------T-TCEE-------------
T ss_pred ccCEecceeeecCCcc---------------cccCHHHHHHHHHHHHhCC-----------C-CeEE-------------
Confidence 5799999999986443 4999999999999877764 1 2222
Q ss_pred cccCCCCCCccCCCCcCCCceEEEEEECCCCCceeeeeEechHHHHHHhhcC
Q psy8916 94 LQNLHPNPCRFAPSGYFGSKFVTICVTGDKDNQVHMEGYQVSNQCMALVRDG 145 (520)
Q Consensus 94 ~~~~~~~~~~~~~~g~~~s~fvT~~vsg~~~~~i~~~~yqvS~q~~alv~~~ 145 (520)
+||.+|. |.+.+.||-++.++-+--+.+
T Consensus 459 ---------------------itvsftP---GS~SLsAy~LT~eGyeWG~~N 486 (565)
T 3sbg_A 459 ---------------------ISIFSTP---GSVSLSAYNLTDEGYQWGEEN 486 (565)
T ss_dssp ---------------------EEEEEET---TEEEEEEEEECHHHHHHHHTT
T ss_pred ---------------------EEEEecC---CceEEEEEecCHhHHHHHhhc
Confidence 4555554 789999999999999888875
No 114
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=89.93 E-value=1.1 Score=42.83 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=62.3
Q ss_pred cccccceeeeeeeCCCc--ceeeEEecCCcchHHHHHHHHhhcCCCCC-cceeee--cCCccccccccccccccccCCCC
Q psy8916 167 YVPDVFYKILRIQSPVG--IVKRININRSDTCKDLFEKINKEFELNTY-NFALFK--QRNKTDEIFSSRDQTIASVGLSN 241 (520)
Q Consensus 167 yvp~vfYMiIRfRSkdG--~m~RVev~ptDtfs~LleKLl~~f~ls~d-sftL~~--nr~~~~~l~s~~~~tv~~lgLkH 241 (520)
..-|||...+++.-..- ....+.++..+++.+|++++...|+++.+ .+.|.. +.+ +-++....+.||.+++|..
T Consensus 121 ~~vEvyP~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~-~~~~L~~~~~tl~~~~l~~ 199 (217)
T 4a3p_A 121 CKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSN-TFEPLNKPDSTIQDAGLYQ 199 (217)
T ss_dssp EEECCSCEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETT-EEEECCCTTSBHHHHTCCT
T ss_pred eEEEEeccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCC-CeeecCCCCCCHHHhCCCC
Confidence 44577777777543332 02457789999999999999999999875 566643 233 3333334578999999999
Q ss_pred cCeEEEeecCCCCC
Q psy8916 242 GDFVYMMNLSSPND 255 (520)
Q Consensus 242 GDmlyl~~~~~~~~ 255 (520)
|++|.|...+...+
T Consensus 200 ~Q~illE~r~~dg~ 213 (217)
T 4a3p_A 200 GQVLVIEQKNEDGT 213 (217)
T ss_dssp TCEEEEEECCCC-C
T ss_pred CCEEEEEEecCCCC
Confidence 99999998765443
No 115
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=89.23 E-value=0.98 Score=44.91 Aligned_cols=68 Identities=19% Similarity=0.349 Sum_probs=52.1
Q ss_pred cCCCeEEEEEeeccccccCCCceeeeeecCCceeechHHHHHHHhhhhhC-CCCCCCCCCCCCCcceeeeeecchhhhhc
Q psy8916 13 NLGLTQVGWIFTDLVAEDLQLGTVRHTRNIDSHFLSAHECIMAGHLQNLH-PNPCRFAPSGYFGSKFVTICVTVNECIMA 91 (520)
Q Consensus 13 ~lgl~~vG~Iftdl~~~~~~~g~v~~~r~~~s~fls~~E~~~aa~~Q~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (520)
.-+|+.+|||-|+-... -|||+.++.+-|++|... |
T Consensus 107 l~dLe~LGWIHTqptq~---------------~fLSs~Dl~tH~~~~~~~~~---------------------------- 143 (254)
T 2og4_A 107 TEGLELLGWIHTQTEEL---------------KFMAASEVATHSKLFADKKR---------------------------- 143 (254)
T ss_dssp CTTCEEEEEEEEESSCC---------------SSCCHHHHHHHHHHHTTTCT----------------------------
T ss_pred hcCCEecceEeeCCCCC---------------cccCHHHHHHHHHHHHhcCC----------------------------
Confidence 46999999999986443 499999999999999962 2
Q ss_pred cccccCCCCCCccCCCCcCCCceEEEEEECCCCCceeeeeEechHHHHHHhhcC
Q psy8916 92 GHLQNLHPNPCRFAPSGYFGSKFVTICVTGDKDNQVHMEGYQVSNQCMALVRDG 145 (520)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~s~fvT~~vsg~~~~~i~~~~yqvS~q~~alv~~~ 145 (520)
+.|.+|++-. .|.+.+.||-+++.++.--+.+
T Consensus 144 ---------------------eaIaIvcsft-pgs~sl~af~LT~~G~~Wg~~n 175 (254)
T 2og4_A 144 ---------------------DCIDISIFST-PGSVSLSAYNLTDEGYQWGEEN 175 (254)
T ss_dssp ---------------------TCEEEEEEEE-TTEEEEEEEEECHHHHHHHHTC
T ss_pred ---------------------CeEEEEEecC-CCCceeEEEEcChhhhhhhhhc
Confidence 2233444433 3778999999999999876665
No 116
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.01 E-value=0.28 Score=49.46 Aligned_cols=85 Identities=18% Similarity=0.290 Sum_probs=56.7
Q ss_pred CeeeecCHHHHHHHHHHHHhcC-ceeeEEEEEEEeeCCCCCccceEEEEEEecCCCCCCCCceEEcCCCChHHHHHHHHh
Q psy8916 415 DNVEFENRTLVERFLEYWRVTG-HQRLGLLYGKYQLHPDVPLGIKAVVAAIYEPPQESSRDKIKLLPDPKAEVVEEIASS 493 (520)
Q Consensus 415 Dhvef~~~~~v~~Fi~~wr~~g-~QR~G~LYG~Y~~~~~vPlGikAvVeAIYEPPQ~~~~dg~~ll~d~~e~~Vd~iA~~ 493 (520)
.+|..+.. .+-..+.--|..+ .--+|.|.|.+.+...+ .|...|..|++++.+.+.-.+.......-++.+.
T Consensus 25 ~~V~is~l-allkm~~Ha~~~~~~eV~GlLlG~~~~~~~v------~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~ 97 (306)
T 4b4t_V 25 ETVYISSI-ALLKMLKHGRAGVPMEVMGLMLGEFVDDYTV------NVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQ 97 (306)
T ss_dssp CEEEECHH-HHHHHHHHTCSCSSSCCEEEEEEEEETTTEE------EEEEEECCCCEESSSCEECCCHHHHHHHHHHHHH
T ss_pred CEEEEeHH-HHHHHHHHhcCCCCceEEEEEeeEEcCCeEE------EEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHH
Confidence 45555554 3334444444432 35689999998765444 8999999999999888765543333344455555
Q ss_pred cC--CeEEEEEEecC
Q psy8916 494 LG--LTQVGWIFTDL 506 (520)
Q Consensus 494 LG--L~rVG~IFTdl 506 (520)
.| +..|||.-||-
T Consensus 98 v~~~~~vVGWYhShP 112 (306)
T 4b4t_V 98 TGRDQMVVGWYHSHP 112 (306)
T ss_dssp HSCCCCCSEEEEECC
T ss_pred hCCCcceeeEEecCC
Confidence 55 88999999984
No 117
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=88.58 E-value=3.5 Score=39.59 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=66.0
Q ss_pred CCcccccccceeeeeeeCCCcce---eeEEecCCcchHHHHHHHHhhcCCCCC-cceeeecC-Ccccccccccccccccc
Q psy8916 163 SDKQYVPDVFYKILRIQSPVGIV---KRININRSDTCKDLFEKINKEFELNTY-NFALFKQR-NKTDEIFSSRDQTIASV 237 (520)
Q Consensus 163 ~~~~yvp~vfYMiIRfRSkdG~m---~RVev~ptDtfs~LleKLl~~f~ls~d-sftL~~nr-~~~~~l~s~~~~tv~~l 237 (520)
......-|||...+++.--.- + ..+.++..+++.+|++++...|+++.+ .+.|..-. +.+-++....+.||.++
T Consensus 129 ~~~~~~vEvyP~~l~l~~~~~-~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~ 207 (231)
T 3jyu_A 129 FVKHCKVEVYLLELKLCENSD-PTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDA 207 (231)
T ss_dssp SSCEEEECCSCEEEEEEETTE-EEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTT
T ss_pred CCCcceEEEecceEEEEecCC-CCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHh
Confidence 345666788888888644333 2 235569999999999999999999875 56664322 22223333456899999
Q ss_pred CCCCcCeEEEeecCCCCCC
Q psy8916 238 GLSNGDFVYMMNLSSPNDE 256 (520)
Q Consensus 238 gLkHGDmlyl~~~~~~~~~ 256 (520)
+|..|++|.+...+...++
T Consensus 208 ~L~~~Q~illE~r~~dg~W 226 (231)
T 3jyu_A 208 GLYQGQVLVIEPQNEDGTW 226 (231)
T ss_dssp TCCTTEEEEEEECCTTSCC
T ss_pred CCCCCCEEEEEEecCCCCC
Confidence 9999999999987655443
No 118
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=88.37 E-value=2 Score=36.95 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=58.6
Q ss_pred cceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 171 VFYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 171 vfYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
--+.-|+|++..+ ..++.+-.++.+..|++-.....+++.+++.+..+ ..+|. .+.|..+||+..||+|-+.
T Consensus 19 ~~~IniKV~~~g~-ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfD---G~rI~--~~~TP~~L~meD~DiID~~ 90 (95)
T 2l76_A 19 PRLFPLKIRCRAD-LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFG---ETELS--PTATPRTLKLGVADIIDCV 90 (95)
T ss_dssp CCCEEEEEECSSS-EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEET---TEECC--TTSCHHHHTCCSSCEEEEE
T ss_pred CCeEEEEEEcCCc-EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEEC---CcCCC--CCCCHhHcCCCCCCEEEEE
Confidence 3458899998666 89999999999999999999999999887754432 33454 5679999999999998764
No 119
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=88.01 E-value=1.1 Score=42.87 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=60.4
Q ss_pred ccceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 170 DVFYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 170 ~vfYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
.--++.|+|+. +|....+.|.+++++..|++...+..+++.+.+.+.-+ ..+|. .+.|..+|++..||+|-+.-
T Consensus 26 ~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~Fd---G~rI~--~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 26 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIRIQ--ADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp CCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEET---TEECC--TTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEEC---CEEcC--CCCCHHHcCCCCCCEEEEEe
Confidence 34578899986 77577899999999999999999999999877765443 34455 57799999999999988764
Q ss_pred c
Q psy8916 250 L 250 (520)
Q Consensus 250 ~ 250 (520)
+
T Consensus 100 ~ 100 (200)
T 3pge_A 100 E 100 (200)
T ss_dssp C
T ss_pred c
Confidence 3
No 120
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=87.84 E-value=0.95 Score=45.83 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=51.8
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCcc-ccccccccccccccCCCCcCeEEEe
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKT-DEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~-~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
+-|+|... |..+-|++++++++.+|.++|.+..+++.+...|..-. .+ +.+. .+.+|+++||+.|..|.|.
T Consensus 6 i~i~Vk~~-g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k-~~Gk~l~--D~~~L~~~~ik~g~~l~L~ 77 (320)
T 3shq_A 6 VVVIVKWS-GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLK-YKGKTAA--DNVKISALELKPNFKLMMV 77 (320)
T ss_dssp EEEEEEET-TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCB-SSSSBCC--TTSBTTSSCCC--CEEEEE
T ss_pred EEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecc-cCCcccC--ccccHHHcCCCCCCEEEEE
Confidence 44566654 44788999999999999999999999998766654110 12 2333 4678999999999999986
No 121
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=87.26 E-value=1.3 Score=42.84 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=59.0
Q ss_pred cceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 171 VFYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 171 vfYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
--++.|+|+. +|....+.|.+++.+..|++...+..+++...+.+.-+ ..+|. .+.|..+|++..||+|-+..
T Consensus 55 ~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFD---GqRI~--~ddTPeDLdMEDGDtIDV~l 127 (207)
T 3tix_A 55 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYD---GIEIQ--ADQTPEDLDMEDNDIIEAHR 127 (207)
T ss_dssp CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEET---TEECC--SSCCTTTTTCCTTEEEEECC
T ss_pred CCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEEC---CeecC--CCCCHHHcCCCCCCEEEEEE
Confidence 3477888875 77688999999999999999999999998877655433 34455 47899999999999998863
No 122
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=85.23 E-value=1.7 Score=38.45 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=50.6
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcC-CCCCcceeeecCCccccccccccccccccCCCCcCeE
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFE-LNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFV 245 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~-ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDml 245 (520)
.-.|+||-+||....-....++++.+|++-|..... .....|.|...-. ...+.. .++||.++||.+.-+|
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fP-rk~l~d-~~~TL~eagL~psavl 123 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFP-NKELAD-ENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTT-TEECCS-TTCBHHHHTCSSCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCC-CCCCCC-CCCcHHHCCCcCceEE
Confidence 346999999994455567799999999999988653 4445777765422 223443 4789999999985543
No 123
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=84.39 E-value=4.7 Score=35.95 Aligned_cols=80 Identities=18% Similarity=0.180 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhcC-ceeeEEEEEEEeeCCCCCccceEEEEEEecCCCC---CCCCceEEcCCCChHHHHHHHHhcCC
Q psy8916 421 NRTLVERFLEYWRVTG-HQRLGLLYGKYQLHPDVPLGIKAVVAAIYEPPQE---SSRDKIKLLPDPKAEVVEEIASSLGL 496 (520)
Q Consensus 421 ~~~~v~~Fi~~wr~~g-~QR~G~LYG~Y~~~~~vPlGikAvVeAIYEPPQ~---~~~dg~~ll~d~~e~~Vd~iA~~LGL 496 (520)
+..+++.++..=+... .=-+|+|.|++...+. .+|..+|.-|.. ...+.+.+.+. ....+.+.++..||
T Consensus 4 ~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~------~~v~~~~p~~n~~~~~~~~~f~~dp~-~~~~~~~~~~~~g~ 76 (153)
T 2kcq_A 4 TPDILDQIRVHGADAYPEEGCGFLLGTVTDDGD------NRVAALHRATNRRSEQRTRRYELTAD-DYRAADAAAQEQGL 76 (153)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCEEEEEEECTTSC------EEEEEEEESSCCCCCCCSCCSSCCCC-SHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcCCcceEEEEEEeeccCCC------eEEEEEEECCCCCCCCCCcEEEECHH-HHHHHHHHHHHCCC
Confidence 3467788888777753 5689999999863222 256666666654 33455655433 23445566677899
Q ss_pred eEEEEEEecCc
Q psy8916 497 TQVGWIFTDLV 507 (520)
Q Consensus 497 ~rVG~IFTdl~ 507 (520)
+.|||+=||-.
T Consensus 77 ~ivG~yHSHP~ 87 (153)
T 2kcq_A 77 DVVGVYHSHPD 87 (153)
T ss_dssp EEEEEEEECSS
T ss_pred eEEEEEeCCCC
Confidence 99999999864
No 124
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.28 E-value=3 Score=41.94 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=52.3
Q ss_pred CCCeEEEEEeeccccccCCCceeeeeecCCceeechHHHHHHHhhhhhCCCCCCCCCCCCCCcceeeeeecchhhhhccc
Q psy8916 14 LGLTQVGWIFTDLVAEDLQLGTVRHTRNIDSHFLSAHECIMAGHLQNLHPNPCRFAPSGYFGSKFVTICVTVNECIMAGH 93 (520)
Q Consensus 14 lgl~~vG~Iftdl~~~~~~~g~v~~~r~~~s~fls~~E~~~aa~~Q~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (520)
-.+..|||.-|+.-- ..|||...+-.-..+|...|
T Consensus 100 ~~~~vVGWYhShP~~---------------~~~~S~~Di~tq~~yQ~~~~------------------------------ 134 (306)
T 4b4t_V 100 RDQMVVGWYHSHPGF---------------GCWLSSVDVNTQKSFEQLNS------------------------------ 134 (306)
T ss_dssp CCCCCSEEEEECCSS---------------SCCCCHHHHHHHHHHHHHCS------------------------------
T ss_pred CCcceeeEEecCCCC---------------CCcCCHHHHHHHHHHHhcCC------------------------------
Confidence 457789999997522 24899999999999998644
Q ss_pred cccCCCCCCccCCCCcCCCceEEEEEEC--CCCCceeeeeEechHHHHHHhhcC
Q psy8916 94 LQNLHPNPCRFAPSGYFGSKFVTICVTG--DKDNQVHMEGYQVSNQCMALVRDG 145 (520)
Q Consensus 94 ~~~~~~~~~~~~~~g~~~s~fvT~~vsg--~~~~~i~~~~yqvS~q~~alv~~~ 145 (520)
.||-+|+.. ...|.+.+.||+.+++.+.....+
T Consensus 135 -------------------~~V~lV~Dp~~t~~G~~~i~Afr~~~~~~~~~~~~ 169 (306)
T 4b4t_V 135 -------------------RAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLE 169 (306)
T ss_dssp -------------------SCEEEEECSSSSSSCSSCEEEEECCHHHHHHCCCC
T ss_pred -------------------CcEEEEECCCcCCCCceeeeEEEecCccccccccC
Confidence 356677765 446999999999999998776554
No 125
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=80.70 E-value=4.3 Score=34.05 Aligned_cols=63 Identities=21% Similarity=0.180 Sum_probs=51.2
Q ss_pred eCCCcceeeEEecCCcchHHHHHHHHhhcCCCCC-cceeeecCCccccccccccccccccCCCCcCeEEE
Q psy8916 179 QSPVGIVKRININRSDTCKDLFEKINKEFELNTY-NFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247 (520)
Q Consensus 179 RSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~d-sftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl 247 (520)
-|+.+ -+|+.+.++.++..|+..-....+++.. ++.+.-+ ..+|. .+.+++++++..||.|=+
T Consensus 16 ~~~~~-dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFD---GdRLd--p~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 16 SSKSE-DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFE---GEWLD--PNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp ESSSC-CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEET---TEECC--TTSBGGGSSCCTTCEEEE
T ss_pred ccCCC-CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEc---CcccC--ccCChhhhCCcCCceeee
Confidence 46778 7999999999999999999999999876 6665433 33454 577999999999999854
No 126
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=78.35 E-value=3.9 Score=36.20 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhc-CceeeEEEEEEEeeCCCCCccceEEEEEEecCCC-CCCCCceEEcCCCCh-HHHHHHHHhcCCeE
Q psy8916 422 RTLVERFLEYWRVT-GHQRLGLLYGKYQLHPDVPLGIKAVVAAIYEPPQ-ESSRDKIKLLPDPKA-EVVEEIASSLGLTQ 498 (520)
Q Consensus 422 ~~~v~~Fi~~wr~~-g~QR~G~LYG~Y~~~~~vPlGikAvVeAIYEPPQ-~~~~dg~~ll~d~~e-~~Vd~iA~~LGL~r 498 (520)
..+++.++..-+.. ..=-+|+|.|++..+. .+|..+|..|. ...++.+++- +.+ ..+.+-|+..||+.
T Consensus 6 ~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~-------~~v~~~~p~~n~~~~~~~f~~d--p~~~~~~~~~~~~~g~~i 76 (146)
T 2kks_A 6 KKQMEEMLAHARQALPNEACGLLGGRRDGDD-------RWVERVYPLNNLDQSPEHFSMD--PREQLTAVKDMRKNGWVM 76 (146)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEEEEEETTE-------EEEEEEECCCCCSCCSSSCCCC--HHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHhcCCcceEEEEEEEEcCCC-------cEEEEEEECCCcCCCCceEEEC--HHHHHHHHHHHHHCCCEE
Confidence 45788888887764 4679999999987442 36777777774 3444555432 222 33444567789999
Q ss_pred EEEEEecCc
Q psy8916 499 VGWIFTDLV 507 (520)
Q Consensus 499 VG~IFTdl~ 507 (520)
|||+=||-.
T Consensus 77 vG~~HSHP~ 85 (146)
T 2kks_A 77 LGNFHSHPA 85 (146)
T ss_dssp EEEEEEESS
T ss_pred EEEEeCCCc
Confidence 999999864
No 127
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=72.02 E-value=2.6 Score=36.12 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=42.2
Q ss_pred eeEEecCCcchHHHHHHHHh--hcCCCCCcceeeecCCccc-----------ccc-ccccccccccCCCCcCeEEEe
Q psy8916 186 KRININRSDTCKDLFEKINK--EFELNTYNFALFKQRNKTD-----------EIF-SSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 186 ~RVev~ptDtfs~LleKLl~--~f~ls~dsftL~~nr~~~~-----------~l~-s~~~~tv~~lgLkHGDmlyl~ 248 (520)
..|+++++.++.+|++.|.+ .|.+..-+++-. .++..+ +.. ...++++.+||+..||.|.|+
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~-~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITAT-LEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEE-ETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred EEEEECCchhHHHHHHHHHhChHhhccCCeeeee-cCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 57999999999999999988 455544333211 011111 111 234678999999999999996
No 128
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=70.45 E-value=8 Score=34.82 Aligned_cols=63 Identities=14% Similarity=0.300 Sum_probs=45.7
Q ss_pred eEEecC----CcchHHHHHHHHhhcCCCCCcceeeecCCcccc-----ccccccccccccCCCCcCeEEEeecC
Q psy8916 187 RININR----SDTCKDLFEKINKEFELNTYNFALFKQRNKTDE-----IFSSRDQTIASVGLSNGDFVYMMNLS 251 (520)
Q Consensus 187 RVev~p----tDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~-----l~s~~~~tv~~lgLkHGDmlyl~~~~ 251 (520)
.+.|++ ..++++|.+.|..+++.+. .|+|+.. +..+. ...+..+++++||+++|..|.+.-++
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~-~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DEd 80 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDA-SNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDEE 80 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEET-TTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEESC
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEec-CCCCeEeCCCccccccCcHHHcCcCCCcEEEEEccc
Confidence 445554 3589999999989999875 6777631 12222 33566899999999999999998554
No 129
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=69.13 E-value=0.98 Score=44.17 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred ceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 172 FYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 172 fYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
-+|-|+| +.+|....+.|.+++.+..|++...+..+++...+.+.-+ ..+|. .+.|..+|++..||+|-+..
T Consensus 20 e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFD---GqRI~--dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 20 THINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIRIQ--ADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEEC---CEecC--CCCCHHHcCCCCCCEEEEEe
Confidence 3778888 7788677888899999999999999999998776654333 33455 47799999999999987753
No 130
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=52.94 E-value=26 Score=28.92 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=44.3
Q ss_pred CcceeeEEecCCcchHHHHHHHHhhcCCCCCc---ceeeecCCccccccccccccccccCCCCcCeEEE
Q psy8916 182 VGIVKRININRSDTCKDLFEKINKEFELNTYN---FALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247 (520)
Q Consensus 182 dG~m~RVev~ptDtfs~LleKLl~~f~ls~ds---ftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl 247 (520)
.|+.+-+.++-.=++..|++.+.+.++++... +.+ .-.|...-+. .+..|++.|+.+||.|=+
T Consensus 15 ~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~i-rv~NK~~~L~--~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 15 NGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWI-RVVNKDKVFS--GECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEE-EEGGGTEEEE--TTSBTGGGTCCTTCEEEE
T ss_pred CCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEE-EEecCCEEEc--CCCEEeeCCcCCCCEEEE
Confidence 34378888889999999999999999887531 222 1122222233 467899999999999854
No 131
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=52.33 E-value=26 Score=32.99 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=55.7
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
+.-|++++ +|.-..+.+..++.+..|++...+..+++.+++.+.-+. ..+. .+.|..+|.+..||.|=+..
T Consensus 21 ~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG---~~i~--~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 21 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG---IRIQ--ADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETT---EECC--TTCCTTTTTCCTTEEEEEEC
T ss_pred cEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECC---Eecc--CCCChHHhhhcccccchhhc
Confidence 67788888 653458899999999999999999999998877654432 2233 46788999999999987653
No 132
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=51.32 E-value=23 Score=30.43 Aligned_cols=46 Identities=11% Similarity=0.255 Sum_probs=40.2
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCC-Ccceeeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNT-YNFALFKQ 219 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~-dsftL~~n 219 (520)
.++||.+.||..+-|.|+++.+..++.+.+..+..+.. .+|+|++.
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~ 56 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVEC 56 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEe
Confidence 48999999997888999999999999999999987774 47888755
No 133
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=48.73 E-value=54 Score=31.44 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=37.8
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCC-cceeee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTY-NFALFK 218 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~d-sftL~~ 218 (520)
+.++|.-.|| +..++++++.+..+|+++|...+++... .|.|+.
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~ 46 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQY 46 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEE
Confidence 4678889999 8999999999999999999999999763 566653
No 134
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=48.31 E-value=3.8 Score=42.57 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMMN 249 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~~ 249 (520)
+.-|+|++ +|....+.|.+++.+..|++...+..+++..++.+.-+ ..+|. .+.|.++|++..||.|-+..
T Consensus 21 ~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFd---G~rI~--~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 21 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIRIQ--ADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred eEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEEC---CeECC--CCCChHHcCCCccchhhhhh
Confidence 66788887 55467888999999999999999999988776654332 33455 56799999999999987653
No 135
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=47.49 E-value=3.9 Score=41.65 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred ccccceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEE
Q psy8916 168 VPDVFYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247 (520)
Q Consensus 168 vp~vfYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl 247 (520)
+++-=+..|++++ +|...-+.+.+++.|..|++...+..+++...+.+.-+ ..+|. .+.|..+||+..||+|-+
T Consensus 25 ~~~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~---G~~i~--~~~Tp~~l~med~d~i~~ 98 (389)
T 4da1_A 25 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIRIQ--ADQAPEDLDMEDNDIIEA 98 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC---CEEcC--CCCCHHHcCCCCCCEeee
Confidence 3333567788888 55356688899999999999999999998876654332 23454 567999999999999776
Q ss_pred e
Q psy8916 248 M 248 (520)
Q Consensus 248 ~ 248 (520)
.
T Consensus 99 ~ 99 (389)
T 4da1_A 99 H 99 (389)
T ss_dssp -
T ss_pred e
Confidence 5
No 136
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=43.53 E-value=66 Score=31.29 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=38.9
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCC-Ccceeeec
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNT-YNFALFKQ 219 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~-dsftL~~n 219 (520)
+.++|.-.|| ...++++++.+..+|+++|...+++.. +-|.|+..
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~ 68 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT 68 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE
Confidence 5678999999 999999999999999999999999986 35666544
No 137
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=37.31 E-value=32 Score=36.91 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=48.0
Q ss_pred eeeEEecCCcchHHHHHHHHhhcCCCCC-cceeeecCC--cccccccccccccccc--CCCCcCeEEEee
Q psy8916 185 VKRININRSDTCKDLFEKINKEFELNTY-NFALFKQRN--KTDEIFSSRDQTIASV--GLSNGDFVYMMN 249 (520)
Q Consensus 185 m~RVev~ptDtfs~LleKLl~~f~ls~d-sftL~~nr~--~~~~l~s~~~~tv~~l--gLkHGDmlyl~~ 249 (520)
.-.+-++.++++++|...|.+.++++.+ .+.++++-. .-..+ .....|+.+. +|.+||+|-.--
T Consensus 148 ~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l-~~~~~t~~~~~~eL~~GdII~fQ~ 216 (530)
T 2ylm_A 148 CGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERI-QDYDVSLDKALDELMDGDIIVFQK 216 (530)
T ss_dssp EEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEEC-CCSSSBHHHHSTTCCTTEEEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEc-ccccccHHHHHhcccCCCEEEEEe
Confidence 4578899999999999999999999876 566776532 11222 2135689988 999999987653
No 138
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=37.03 E-value=71 Score=29.04 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=47.9
Q ss_pred CeeeecCHHHHHHHHHHHHh----cCceeeEEEEEEEeeCCCCCccceEEEEEEecCCCCCCCCc---eEEcCCCChHHH
Q psy8916 415 DNVEFENRTLVERFLEYWRV----TGHQRLGLLYGKYQLHPDVPLGIKAVVAAIYEPPQESSRDK---IKLLPDPKAEVV 487 (520)
Q Consensus 415 Dhvef~~~~~v~~Fi~~wr~----~g~QR~G~LYG~Y~~~~~vPlGikAvVeAIYEPPQ~~~~dg---~~ll~d~~e~~V 487 (520)
..|.+....+++-...+-|. ....=+|.|.|+.. .+ ...|.-.|+=|..++.+. +.+..+ .....
T Consensus 8 ~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~-~~------~v~V~~~f~lp~~~~~~~~~~~~~d~e-y~~~m 79 (187)
T 2o95_A 8 QKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQ-KK------VLDVSNSFAVPFDEDDKDDSVWFLDHD-YLENM 79 (187)
T ss_dssp SEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEES-SS------EEEEEEEEEECEEECSSCTTSEEECHH-HHHHH
T ss_pred CEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEc-CC------EEEEEEEEEeCCcccCCCcchhhcCHH-HHHHH
Confidence 35666665444444444454 34578999999975 22 246777777776655442 233222 22222
Q ss_pred HHHHH--hcCCeEEEEEEecC
Q psy8916 488 EEIAS--SLGLTQVGWIFTDL 506 (520)
Q Consensus 488 d~iA~--~LGL~rVG~IFTdl 506 (520)
.++++ .-++..|||=-|+-
T Consensus 80 ~~~~~~v~~~~~iVGWY~s~~ 100 (187)
T 2o95_A 80 YGMFKKVNARERIVGWYHTGP 100 (187)
T ss_dssp HHHHHTTSSSCEEEEEEECCS
T ss_pred HHHHHHhCCCCCEEEEEcCCC
Confidence 23334 24899999977754
No 139
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=35.11 E-value=83 Score=26.16 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=35.2
Q ss_pred eeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCcccc
Q psy8916 175 ILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDE 225 (520)
Q Consensus 175 iIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~ 225 (520)
.+.++-.+ +.-|.+.+.-++.+|.++|.+.|.++.+...|+......++
T Consensus 7 ~VKV~~~~--tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~ 55 (83)
T 1oey_A 7 TLKVHYKY--TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNE 55 (83)
T ss_dssp EEEEESSS--EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSS
T ss_pred EEEEEEEE--EEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCC
Confidence 44444442 47788888889999999999999998777777654433343
No 140
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=33.64 E-value=1.4e+02 Score=23.03 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=41.1
Q ss_pred cceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 171 VFYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 171 vfYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
+|-|.|++-.+.+ ...++++...++.+|++++ +++...+.+.-|. ++.. .+. -|+.||.|-+.
T Consensus 2 ~~~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~----~~v~-~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 2 VIGMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNG----QIVI-DEE-----EIFDGDIIEVI 64 (70)
T ss_dssp CCCEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETT----EECC-TTS-----BCCTTCEEEEE
T ss_pred ceeEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECC----EECC-Ccc-----cCCCCCEEEEE
Confidence 3558899999988 7889998888988888875 3444444443322 1111 111 48999988775
No 141
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.56 E-value=52 Score=28.03 Aligned_cols=58 Identities=16% Similarity=0.318 Sum_probs=44.7
Q ss_pred eeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 186 KRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 186 ~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
.=+.|+|.-++..|+.-|-++=.++.+.+.|.++......|. .+++|.++||+- ||..
T Consensus 23 tVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~Ld--LskSLndlgirE---Lya~ 80 (91)
T 2daj_A 23 TIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLD--LTKSLNDLGLRE---LYAM 80 (91)
T ss_dssp EEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCC--TTSCHHHHTCSE---EEEE
T ss_pred eEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccc--hhcchhhhhhhh---hhee
Confidence 346788999999999999999888877777766544434444 467999999996 8875
No 142
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=32.76 E-value=1.2e+02 Score=32.96 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=37.6
Q ss_pred eeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCC-cceeee
Q psy8916 174 KILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTY-NFALFK 218 (520)
Q Consensus 174 MiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~d-sftL~~ 218 (520)
+.++|.-.|| +..|+|+++.+..+|++.|...+++... .|.|+.
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~ 49 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQY 49 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEE
Confidence 5678888999 8999999999999999999999999753 556643
No 143
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=31.11 E-value=1.5e+02 Score=29.61 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=39.9
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCC-Ccceeeec
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNT-YNFALFKQ 219 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~-dsftL~~n 219 (520)
.+.++|+-+||....++++++.+..+|+++|...+++.. +.|.|+..
T Consensus 85 ~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~ 132 (371)
T 3ivf_A 85 QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRE 132 (371)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECC
T ss_pred eeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEE
Confidence 378889999996667999999999999999999999876 46777644
No 144
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=29.59 E-value=86 Score=29.51 Aligned_cols=49 Identities=8% Similarity=0.268 Sum_probs=40.0
Q ss_pred cceeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCC-cceeeec
Q psy8916 171 VFYKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTY-NFALFKQ 219 (520)
Q Consensus 171 vfYMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~d-sftL~~n 219 (520)
+.-+++||.+.||..+-|.|+++.+..+|.+.|...+++..+ .+.|++.
T Consensus 32 ~~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~ 81 (291)
T 3tca_A 32 VKKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEI 81 (291)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEE
T ss_pred ccceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEe
Confidence 456789999999967789999999999999999999876543 5666543
No 145
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=28.67 E-value=71 Score=35.38 Aligned_cols=64 Identities=13% Similarity=0.296 Sum_probs=42.5
Q ss_pred eeeEEecCCcchHHHHHHHHhh--cCCCCCcce---------eeecCC-c-cccccccccccccccCCCCcCeEEEe
Q psy8916 185 VKRININRSDTCKDLFEKINKE--FELNTYNFA---------LFKQRN-K-TDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 185 m~RVev~ptDtfs~LleKLl~~--f~ls~dsft---------L~~nr~-~-~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
..++++++..++.+|++.|... +++...+++ ||..-. . .........++|++||+++|+.|+++
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 3679999888999999999884 445433322 221110 0 01122445789999999999999996
No 146
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=27.68 E-value=1.1e+02 Score=30.65 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=50.6
Q ss_pred eeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCC----CCcceeee--cCCcccc-ccccccccccccCCCCcCeEEEe
Q psy8916 176 LRIQSPVGIVKRININRSDTCKDLFEKINKEFELN----TYNFALFK--QRNKTDE-IFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 176 IRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls----~dsftL~~--nr~~~~~-l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
|+|+-++- ++-+..+|+.++.++...|.+.++-. .+.+.|+- +.+.++. +. .++++...||+.|+.|...
T Consensus 6 ~~~~~~~~-~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~--~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 6 LKISIGNV-VKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLE--AGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEETTE-EEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECC--TTSBGGGGTCCTTCEEEEE
T ss_pred EEEEecce-eEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEecc--CCCCHHHhCCCCCceeecc
Confidence 45555544 78899999999999999999998542 23444543 2223333 33 4679999999999998876
Q ss_pred e
Q psy8916 249 N 249 (520)
Q Consensus 249 ~ 249 (520)
.
T Consensus 83 ~ 83 (371)
T 3ivf_A 83 K 83 (371)
T ss_dssp E
T ss_pred C
Confidence 4
No 147
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=25.22 E-value=47 Score=34.83 Aligned_cols=63 Identities=13% Similarity=0.315 Sum_probs=31.6
Q ss_pred eeEEecCCcchHHHHHHHHhh--cCCCCCcce---------eeec--CCccccccccccccccccCCCCcCeEEEe
Q psy8916 186 KRININRSDTCKDLFEKINKE--FELNTYNFA---------LFKQ--RNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 186 ~RVev~ptDtfs~LleKLl~~--f~ls~dsft---------L~~n--r~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
.++++++..++.++++.+... +++...+++ ||.. +.-.........+++++||+++|+.|+++
T Consensus 343 ~~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v~ 418 (434)
T 1tt5_B 343 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 418 (434)
T ss_dssp BCCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEECC
T ss_pred ceEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 568888888888899998885 444433322 2221 11111223345788999999999999985
No 148
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=24.52 E-value=1e+02 Score=27.45 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=40.5
Q ss_pred eeEEecCCcchHHHHHHHHhhc-CCCCC---------cceeeecCCccccccccccccccccCCCCcCeEEEe
Q psy8916 186 KRININRSDTCKDLFEKINKEF-ELNTY---------NFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYMM 248 (520)
Q Consensus 186 ~RVev~ptDtfs~LleKLl~~f-~ls~d---------sftL~~nr~~~~~l~s~~~~tv~~lgLkHGDmlyl~ 248 (520)
+=+-+.|.-+|+.|.++++... +.-.| .+.+ +....+--.++||.+.||.|=|+|-+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l-----~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLL-----NDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEE-----TTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEE-----CCccCCCChhhhHHHcCCCchheEEEe
Confidence 3567889999999999988753 32222 2222 122344446889999999999999886
No 149
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=23.78 E-value=1.1e+02 Score=25.59 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=43.2
Q ss_pred eeEEecCCcchHHHHHHHHhhcCCCCCcceeeecCCcccccccccccccccc--CCCCcCeEEEeecCC
Q psy8916 186 KRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASV--GLSNGDFVYMMNLSS 252 (520)
Q Consensus 186 ~RVev~ptDtfs~LleKLl~~f~ls~dsftL~~nr~~~~~l~s~~~~tv~~l--gLkHGDmlyl~~~~~ 252 (520)
...-|+.+.+++.+..-|...+.+ +++.++-|.. +.-..+.++++| ..+..+.||+.|...
T Consensus 25 ~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~----f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys~~ 87 (91)
T 3w1s_C 25 SVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNS----FAPSPQQNIGELWMQFKTNDELIVSYCAS 87 (91)
T ss_dssp -EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTT----BCCCTTSBHHHHHHHHCBTTEEEEEEEC-
T ss_pred cEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCc----cCCCcccHHHHHHHHhCCCCEEEEEEeCc
Confidence 467788999999999999999998 5788875432 112234566665 245677999999754
No 150
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=23.75 E-value=1.6e+02 Score=26.10 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhc------CceeeEEEEEEEeeCCCCCccceEEEEEEecCCCCCCCCceEEcCCCChHHHHHHHHh-cCC
Q psy8916 424 LVERFLEYWRVT------GHQRLGLLYGKYQLHPDVPLGIKAVVAAIYEPPQESSRDKIKLLPDPKAEVVEEIASS-LGL 496 (520)
Q Consensus 424 ~v~~Fi~~wr~~------g~QR~G~LYG~Y~~~~~vPlGikAvVeAIYEPPQ~~~~dg~~ll~d~~e~~Vd~iA~~-LGL 496 (520)
.+=+.++.+.+. ...-+|.|.|... ... ..|.--|+=|.+++.+.+.+..+=.+++.+..-+- -.+
T Consensus 14 vll~I~dH~~R~~~~~g~~~~V~G~LLG~~~-~~~------veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k~v~~~e 86 (141)
T 4e0q_A 14 VIMNISEHWTRFRAQHGEPRQVYGALIGKQK-GRN------IEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQVFSDL 86 (141)
T ss_dssp HHHHHHHHHHCC------CCEEEEEEEEEEE-TTE------EEEEEEEECCEEEETTEEEECHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhhhcccCCCCcEEEEEEEEEEe-CCE------EEEEEEEEecccCCCCceeecHHHHHHHHHHHHHhCCCc
Confidence 444555556432 2468999999974 233 48999999999877665544322123344433322 468
Q ss_pred eEEEEEEec
Q psy8916 497 TQVGWIFTD 505 (520)
Q Consensus 497 ~rVG~IFTd 505 (520)
..|||=-|.
T Consensus 87 ~iVGWY~s~ 95 (141)
T 4e0q_A 87 DFIGWYTTG 95 (141)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEeCC
Confidence 999997765
No 151
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=22.26 E-value=1e+02 Score=29.22 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=59.3
Q ss_pred CCCcCeeeecCHHHHHHHHHHHHhcCceeeEEEEEEEeeCCC---------CCccceEEEEEEecCCCCC----------
Q psy8916 411 YRHVDNVEFENRTLVERFLEYWRVTGHQRLGLLYGKYQLHPD---------VPLGIKAVVAAIYEPPQES---------- 471 (520)
Q Consensus 411 ~R~VDhvef~~~~~v~~Fi~~wr~~g~QR~G~LYG~Y~~~~~---------vPlGikAvVeAIYEPPQ~~---------- 471 (520)
++.+-.+...+........++....|..|++++|..+..... --.|++.+.+..|.+...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~ 192 (368)
T 4eyg_A 113 SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKD 192 (368)
T ss_dssp CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHH
T ss_pred CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHh
Confidence 344445555666777888888888899999999854321110 1246665555556554332
Q ss_pred -CCCceEE-cCCCChHHHHHHHHhcCCeE--EEEEEec
Q psy8916 472 -SRDKIKL-LPDPKAEVVEEIASSLGLTQ--VGWIFTD 505 (520)
Q Consensus 472 -~~dg~~l-l~d~~e~~Vd~iA~~LGL~r--VG~IFTd 505 (520)
.+|.|-+ ..+.....+-.-++.+|+.. |-||.++
T Consensus 193 ~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 193 AKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp HCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred cCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecC
Confidence 3455665 45555555556677899984 6677776
No 152
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=21.90 E-value=1.7e+02 Score=24.44 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=44.3
Q ss_pred eeEEecCCcchHHHHHHHHhhcCCCC-CcceeeecCCcccccccccccccccc--CCCCcCeEEEeecCC
Q psy8916 186 KRININRSDTCKDLFEKINKEFELNT-YNFALFKQRNKTDEIFSSRDQTIASV--GLSNGDFVYMMNLSS 252 (520)
Q Consensus 186 ~RVev~ptDtfs~LleKLl~~f~ls~-dsftL~~nr~~~~~l~s~~~~tv~~l--gLkHGDmlyl~~~~~ 252 (520)
...-|+.+.+++++..-|...+.++. +++.++-|.. +.-..+.++++| ..+....||+.|...
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~----~~P~~d~~~~~Ly~~~k~DGfLyv~Ys~~ 87 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQS----FAPSPDQEVGTLYECFGSDGKLVLHYCKS 87 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTT----BCCCTTCBHHHHHHHHCBTTEEEEEEESS
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCc----cCCChhhHHHHHHHHhCCCCEEEEEEeCc
Confidence 46778899999999999999998864 4777775432 111234566655 234567899999754
No 153
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=20.93 E-value=37 Score=26.38 Aligned_cols=14 Identities=43% Similarity=0.797 Sum_probs=12.9
Q ss_pred eEEEEEEecCccCC
Q psy8916 497 TQVGWIFTDLVAED 510 (520)
Q Consensus 497 ~rVG~IFTdl~~~~ 510 (520)
+.|||-.|.|+++|
T Consensus 25 ~ivgwyct~ltpeg 38 (62)
T 2rh2_A 25 QIVGWYCTNLTPEG 38 (62)
T ss_dssp EEEEEECCSSCSSE
T ss_pred eEeEEEEccccccc
Confidence 68999999999987
No 154
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=20.51 E-value=1.2e+02 Score=29.46 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=38.1
Q ss_pred eeeeeeeCCCcceeeEEecCCcchHHHHHHHHhhcCCCCC-cceee
Q psy8916 173 YKILRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTY-NFALF 217 (520)
Q Consensus 173 YMiIRfRSkdG~m~RVev~ptDtfs~LleKLl~~f~ls~d-sftL~ 217 (520)
-+.++|.-+||....++++++.+..+|+++|...+++... -|.|.
T Consensus 17 ~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~ 62 (296)
T 3qij_A 17 QGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLA 62 (296)
T ss_dssp CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEE
T ss_pred eEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEE
Confidence 3678899999967789999999999999999999999864 45554
Done!