RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8916
(520 letters)
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 34.2 bits (78), Expect = 0.007
Identities = 8/61 (13%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 188 ININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247
+ + T +L +KI+ L + + + D+T+ + +++G + +
Sbjct: 31 VKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE------DKTLREIKVTSGAKIMV 84
Query: 248 M 248
+
Sbjct: 85 V 85
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6
(Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 96
Score = 33.4 bits (76), Expect = 0.012
Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 176 LRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIA 235
+ ++ P G V R +S + L + + K + + + ++
Sbjct: 19 VALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLSTSFPRR--ALEVEGGSSLE 76
Query: 236 SVGLSNG 242
+G++
Sbjct: 77 DIGITVD 83
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 96
Score = 32.7 bits (74), Expect = 0.021
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 188 ININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247
+ +N + ++ + + + D ++ + NG V M
Sbjct: 22 VELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK------DDDWGNIKMKNGMTVLM 75
Query: 248 MNLSSPNDEKPSTSS 262
M + E+PS +
Sbjct: 76 MGSADALPEEPSAKT 90
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 31.4 bits (71), Expect = 0.043
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 176 LRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIA 235
LRI++P G S+ + +F+ + + + L + D ++++
Sbjct: 8 LRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLL 66
Query: 236 SVGL 239
V L
Sbjct: 67 EVKL 70
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 94
Score = 31.4 bits (71), Expect = 0.048
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 175 ILRIQSPVGIVKRININRSD-TCKDLFEKINKEFELNTYNFALFKQRN----KTDEIFSS 229
+LR++S G+ +R++++ T L I + ++ +N L RN K+ F +
Sbjct: 2 MLRVRSRDGL-ERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLA 60
Query: 230 RDQ------TIASVGLSNGDFVYMM 248
I+S+ L++G VY+
Sbjct: 61 FTDMADPNLRISSLNLAHGSMVYLA 85
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 31.0 bits (70), Expect = 0.072
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 176 LRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTY-NFALFKQRNKTDEIFSSRDQTI 234
++I+ G N S D+ I +F L + + +QT+
Sbjct: 17 IQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKE--LADENQTL 74
Query: 235 ASVGLSNG 242
L N
Sbjct: 75 KEANLLNA 82
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 29.6 bits (66), Expect = 0.23
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 187 RININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVY 246
R+ N DT DL + I + L K ++ + +G +
Sbjct: 42 RVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-----DHVSLGDYEIHDGMNLE 96
Query: 247 MM 248
+
Sbjct: 97 LY 98
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 28.3 bits (63), Expect = 0.52
Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 188 ININRSDTCKDLFEKINKEFELNTYNFAL-FKQRNKTDEIFSSRDQTIASVGLSNGDFVY 246
+ +D + KI++ + L ++ D ++A ++NG ++
Sbjct: 26 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKD------SNSLAYYNMANGAVIH 79
Query: 247 MM 248
+
Sbjct: 80 LA 81
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A
(Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 27.9 bits (62), Expect = 0.68
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 188 ININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247
I + +T K L EKI E + + A Q+ S D I + +FV +
Sbjct: 17 IRMEPDETVKVLKEKIEAEKGRDAFPVA--GQKLIYAGKILSDDVPIRDYRIDEKNFVVV 74
Query: 248 M 248
M
Sbjct: 75 M 75
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 27.9 bits (62), Expect = 0.71
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 188 ININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247
+++R T ++L E++ F++ LF + T+ + D + +
Sbjct: 17 EDVSRKATIEELRERVWALFDVRPECQRLFYRGK-----QLENGYTLFDYDVGLNDIIQL 71
Query: 248 M 248
+
Sbjct: 72 L 72
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 28.0 bits (62), Expect = 0.85
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 188 ININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIASVGLSNGDFVYM 247
+ + + + E I+K F+ T L + T+ G+ +G V++
Sbjct: 46 FAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKD-----QDTLIQHGIHDGLTVHL 100
Query: 248 M 248
+
Sbjct: 101 V 101
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 27.7 bits (61), Expect = 1.5
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 176 LRIQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNFALFKQRNKTDEIFSSRDQTIA 235
L ++ P G ++I + L + + + F L + D T+
Sbjct: 46 LMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQ 104
Query: 236 SVGL 239
GL
Sbjct: 105 EAGL 108
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 27.3 bits (60), Expect = 1.7
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 12/96 (12%)
Query: 176 LRIQSPVGIVKRININRSDTCKDLFEKINKEFEL------NTYNFALFKQRNKTDEIFSS 229
+R+ G V + + ++ T DL + I + +L + + +
Sbjct: 10 VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAG 69
Query: 230 R-----DQTIASVGLSNGDFVYMMNLSSPNDEKPST 260
+ + G+ N D V + PS+
Sbjct: 70 EKLTEDRKKLRDYGIRNRDEVSFI-KKLGQKSGPSS 104
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 114
Score = 27.1 bits (60), Expect = 2.1
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 175 ILRIQ-----SPVGIVKRININRSDTCKDLFEKINKEFELNT 211
LRIQ P +K + + L E+ L T
Sbjct: 72 KLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQT 113
>d1dqna_ c.61.1.1 (A:) Guanine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 230
Score = 28.0 bits (62), Expect = 2.3
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 280 TPTEFKSKLSNAFSSSNNIVEDEVDK-ELWKTDGQVKRK 317
T K LS F N+++E EV K L T + K
Sbjct: 6 TGKPVKDVLSTFFKDRNDVLESEVKKFHLLATFEECKAL 44
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein,
OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 26.4 bits (58), Expect = 2.8
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 178 IQSPVGIVKRININRSDTCKDLFEKINKEFELNTYNF-ALFKQRNKTDEIFSSRDQTIAS 236
+++P G IN + L ++I + L F+ + D +
Sbjct: 12 VKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQD------WLGLGI 65
Query: 237 VGLSNGDFVYMM 248
G+ + D + +
Sbjct: 66 YGIQDSDTLILS 77
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 25.5 bits (56), Expect = 4.8
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 188 ININRSDTCKDLFEKINKEFELNTYNFA-LFKQRNKTDEIFSSRDQTIASVGLSNGDFVY 246
+N+ T E INK + N ++ + D DQT+ S + +G V+
Sbjct: 15 VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKD------DQTVESYHIQDGHSVH 68
Query: 247 MM 248
++
Sbjct: 69 LV 70
>d1b9la_ d.96.1.3 (A:) 7,8-dihydroneopterin triphosphate epimerase
{Escherichia coli [TaxId: 562]}
Length = 119
Score = 25.7 bits (56), Expect = 7.7
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 366 VDRGKFVVLEDLSCRIKEGCREHPPWPRGICSKCQPNAITLNRQVYRHVDNVEFE 420
V+ +F +LE L+ + + REH + +A+ R+ D+V
Sbjct: 67 VENNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDKLHAL-------RYADSVSMT 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.414
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,966,192
Number of extensions: 95785
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 21
Length of query: 520
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,185,626
Effective search space: 511004806
Effective search space used: 511004806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)