BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8922
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ1|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ4|A Chain A, Cocrystal Structure Of Eif4e4E-Bp1 Peptide
pdb|1EJH|A Chain A, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|B Chain B, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|C Chain C, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|D Chain D, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1L8B|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
pdb|1L8B|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
Length = 190
Score = 252 bits (643), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 116/188 (61%), Positives = 145/188 (77%), Gaps = 2/188 (1%)
Query: 296 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDY 355
E IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW ++NHI+ +S+L GCDY
Sbjct: 5 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 64
Query: 356 SLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICG 415
SLFK GI PMWEDE NK GGRWLI+L+++QR S+L+ FWLE LLCLIGE+FDDYS+D+CG
Sbjct: 65 SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 124
Query: 416 AVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSS 475
AVVNVRAKGDKI IWT + D + IGR KERLG+ + I YQSH DTA+++ S
Sbjct: 125 AVVNVRAKGDKIAIWTTEC--ENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGS 182
Query: 476 TSKNSFTL 483
T+KN F +
Sbjct: 183 TTKNRFVV 190
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSI 46
IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW + I
Sbjct: 8 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHI 52
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 237 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFST 273
E IKHPL N+W LW+F+NDK+K W+ N R I+ F T
Sbjct: 5 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDT 41
>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
pdb|4DUM|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
Length = 240
Score = 251 bits (642), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 115/188 (61%), Positives = 146/188 (77%), Gaps = 2/188 (1%)
Query: 296 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDY 355
E IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW ++NHI+ +S+L GCDY
Sbjct: 55 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 114
Query: 356 SLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICG 415
SLFK GI PMWEDE NK GGRWLI+L+++QR S+L+ FWLE LLCLIGE+FDDYS+D+CG
Sbjct: 115 SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 174
Query: 416 AVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSS 475
AVVNVRAKGDKI IWT + ++ + IGR KERLG+ + I YQSH DTA+++ S
Sbjct: 175 AVVNVRAKGDKIAIWTTECENREA--VTHIGRVYKERLGLPPKIVIGYQSHADTATKSGS 232
Query: 476 TSKNSFTL 483
T+KN F +
Sbjct: 233 TTKNRFVV 240
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSI 46
IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW + I
Sbjct: 58 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHI 102
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 237 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFST 273
E IKHPL N+W LW+F+NDK+K W+ N R I+ F T
Sbjct: 55 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDT 91
>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gpppa
pdb|1IPC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gtp
pdb|2GPQ|A Chain A, Cap-Free Structure Of Eif4e Suggests Basis For Its
Allosteric Regulation
pdb|2V8W|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8W|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2W97|A Chain A, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
pdb|3TF2|A Chain A, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|B Chain B, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|C Chain C, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|D Chain D, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3U7X|A Chain A, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|3U7X|B Chain B, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|4AZA|A Chain A, Improved Eif4e Binding Peptides By Phage Display Guided
Design.
pdb|4AZA|C Chain C, Improved Eif4e Binding Peptides By Phage Display Guided
Design
Length = 217
Score = 251 bits (641), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 115/188 (61%), Positives = 145/188 (77%), Gaps = 2/188 (1%)
Query: 296 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDY 355
E IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW ++NHI+ +S+L GCDY
Sbjct: 32 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 91
Query: 356 SLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICG 415
SLFK GI PMWEDE NK GGRWLI+L+++QR S+L+ FWLE LLCLIGE+FDDYS+D+CG
Sbjct: 92 SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 151
Query: 416 AVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSS 475
AVVNVRAKGDKI IWT + + + IGR KERLG+ + I YQSH DTA+++ S
Sbjct: 152 AVVNVRAKGDKIAIWTTEC--ENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGS 209
Query: 476 TSKNSFTL 483
T+KN F +
Sbjct: 210 TTKNRFVV 217
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSI 46
IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW + I
Sbjct: 35 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHI 79
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 237 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFST 273
E IKHPL N+W LW+F+NDK+K W+ N R I+ F T
Sbjct: 32 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDT 68
>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa-
4ebp1 Peptide
pdb|3AM7|A Chain A, Crystal Structure Of The Ternary Complex Of
Eif4e-M7gtp-4ebp2 Peptide
Length = 191
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 115/188 (61%), Positives = 146/188 (77%), Gaps = 2/188 (1%)
Query: 296 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDY 355
E IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW ++NHI+ +S+L GCDY
Sbjct: 6 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 65
Query: 356 SLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICG 415
SLFK GI PMWEDE NK GGRWLI+L+++QR S+L+ FWLE LLCLIGE+FDDYS+D+CG
Sbjct: 66 SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 125
Query: 416 AVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSS 475
AVVNVRAKGDKI IWT + ++ + IGR KERLG+ + I YQSH DTA+++ S
Sbjct: 126 AVVNVRAKGDKIAIWTTECENREA--VTHIGRVYKERLGLPPKIVIGYQSHADTATKSGS 183
Query: 476 TSKNSFTL 483
T+KN F +
Sbjct: 184 TTKNRFVV 191
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSI 46
IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW + I
Sbjct: 9 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHI 53
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 237 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFST 273
E IKHPL N+W LW+F+NDK+K W+ N R I+ F T
Sbjct: 6 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDT 42
>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
Length = 217
Score = 249 bits (635), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 114/188 (60%), Positives = 144/188 (76%), Gaps = 2/188 (1%)
Query: 296 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDY 355
E IKHPL N+W LW+F+ DK+K W+ N R I+ F TVEDFW ++NHI+ +S+L GCDY
Sbjct: 32 EHYIKHPLQNRWALWFFKKDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 91
Query: 356 SLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICG 415
SLFK GI PMWEDE NK GGRWLI+L+++QR S+L+ FWLE LLCLIGE+FDDYS+D+CG
Sbjct: 92 SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 151
Query: 416 AVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSS 475
AVVNVRAKGDKI IWT + + + IGR KERLG+ + I YQSH DTA+++ S
Sbjct: 152 AVVNVRAKGDKIAIWTTEC--ENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGS 209
Query: 476 TSKNSFTL 483
T+KN F +
Sbjct: 210 TTKNRFVV 217
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSI 46
IKHPL N+W LW+F+ DK+K W+ N R I+ F TVEDFW + I
Sbjct: 35 IKHPLQNRWALWFFKKDKSKTWQANLRLISKFDTVEDFWALYNHI 79
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 237 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFST 273
E IKHPL N+W LW+F+ DK+K W+ N R I+ F T
Sbjct: 32 EHYIKHPLQNRWALWFFKKDKSKTWQANLRLISKFDT 68
>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex
pdb|4AXG|B Chain B, Structure Of Eif4e-Cup Complex
Length = 248
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 138/191 (72%), Gaps = 4/191 (2%)
Query: 293 VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVG 352
V +E + KHPL N WTLWY END++K WE+ Q EITSF TVEDFW ++NHIK S++++G
Sbjct: 62 VRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLG 121
Query: 353 CDYSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSED 412
DYSLFK IRPMWED NK GGRW+I+L++ + ++L+ WL++LLCLIGEAF D+S+
Sbjct: 122 SDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSK-TDLDNLWLDVLLCLIGEAF-DHSDQ 179
Query: 413 ICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASR 472
ICGAV+N+R K +KI IWT D + ++ L IG K+++ L +G + YQ H+DT +
Sbjct: 180 ICGAVINIRGKSNKISIWTADGNNEEA--ALEIGHKLRDALRLGRNNSLQYQLHKDTMVK 237
Query: 473 TSSTSKNSFTL 483
S K+ +TL
Sbjct: 238 QGSNVKSIYTL 248
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 1 MIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQS 60
+ KHPL N WTLWY END++K WE+ Q EITSF TVEDFW + I E+ ++ SD S
Sbjct: 67 LYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEI-KLGSDYS 125
Query: 61 YYRPRTRAITSSTRTEPGIR 80
++ R + + G R
Sbjct: 126 LFKKNIRPMWEDAANKQGGR 145
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%)
Query: 234 VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFST 273
V +E + KHPL N WTLWY END++K WE+ Q EITSF T
Sbjct: 62 VRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDT 101
>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g
Cap
pdb|3M94|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
M2,2,7g Cap
Length = 189
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 89/180 (49%), Positives = 124/180 (68%), Gaps = 2/180 (1%)
Query: 299 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLF 358
++HPL W LWY + D++K WE+ +++ F TVEDFW ++NHI+ AS L G DY LF
Sbjct: 1 MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLF 60
Query: 359 KSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVV 418
K GI+PMWEDE N GGRWL+ +D+++R+ L+ +WLE+L+ +IGE F+D E ICGAVV
Sbjct: 61 KEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVV 120
Query: 419 NVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSSTSK 478
NVR KGDK+ +WT D+ K D L IG+ +K +L I I Y+ H+D++ RT S K
Sbjct: 121 NVRQKGDKVSLWTRDS--LKDDVNLRIGQILKAKLEIPDTEPIRYEVHKDSSVRTGSMVK 178
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSI 46
++HPL W LWY + D++K WE+ +++ F TVEDFW + I
Sbjct: 1 MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHI 45
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 240 IKHPLHNKWTLWYFENDKNKGWEENQREITSFST 273
++HPL W LWY + D++K WE+ +++ F T
Sbjct: 1 MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDT 34
>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7-
Methyl-Gdp
Length = 177
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 111/189 (58%), Gaps = 19/189 (10%)
Query: 301 HPLHNKWTLWYFENDKNK----GWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYS 356
HPL N WT W F+N + K W I +FSTVEDFW ++N+I S L VG D+
Sbjct: 2 HPLENAWTFW-FDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60
Query: 357 LFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGA 416
FK+ I P WED + NGG+W IS R + + FWL LL +IGE F D+ ++ICGA
Sbjct: 61 CFKNKIEPKWEDPISANGGKWTISCGRGKSDT----FWLHTLLAMIGEQF-DFGDEICGA 115
Query: 417 VVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQ--IVYQSHRDTASRTS 474
VV+VR K +++ IWT +A+ + +SIG++ KE L +Y+ I + H D A R+
Sbjct: 116 VVSVRQKQERVAIWTKNAANEAAQ--ISIGKQWKEFL----DYKDSIGFIVHED-AKRSD 168
Query: 475 STSKNSFTL 483
KN +T+
Sbjct: 169 KGPKNRYTV 177
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 4 HPLHNKWTLWYFENDKNK----GWEENQREITSFSTVEDFWWYFRSIDNEKELS 53
HPL N WT W F+N + K W I +FSTVEDFW + +I N +L+
Sbjct: 2 HPLENAWTFW-FDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLN 54
>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
pdb|2IDR|B Chain B, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
Length = 177
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 110/189 (58%), Gaps = 19/189 (10%)
Query: 301 HPLHNKWTLWYFENDKNK----GWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYS 356
HPL N WT W F+N + K W I +FSTVEDFW ++N+I S L VG D+
Sbjct: 2 HPLENAWTFW-FDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFH 60
Query: 357 LFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGA 416
FK+ I P WED NGG+W IS R + + FWL LL +IGE F D+ ++ICGA
Sbjct: 61 CFKNKIEPKWEDPICANGGKWTISCGRGKSDT----FWLHTLLAMIGEQF-DFGDEICGA 115
Query: 417 VVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQ--IVYQSHRDTASRTS 474
VV+VR K +++ IWT +A+ + +SIG++ KE L +Y+ I + H D A R+
Sbjct: 116 VVSVRQKQERVAIWTKNAANEAAQ--ISIGKQWKEFL----DYKDSIGFIVHED-AKRSD 168
Query: 475 STSKNSFTL 483
KN +T+
Sbjct: 169 KGPKNRYTV 177
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 4 HPLHNKWTLWYFENDKNK----GWEENQREITSFSTVEDFWWYFRSIDNEKELS 53
HPL N WT W F+N + K W I +FSTVEDFW + +I N +L+
Sbjct: 2 HPLENAWTFW-FDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLN 54
>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With
M7gpppa And 4e-Bp
pdb|3HXI|A Chain A, Crystal Structure Of Schistosome Eif4e Complexed With
M7gpppg And 4e-Bp
Length = 189
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 107/178 (60%), Gaps = 9/178 (5%)
Query: 301 HPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKS 360
HPL + W+ + F+ K W+E ++ +FST+EDFW V H + ++ G D +FKS
Sbjct: 10 HPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKS 69
Query: 361 GIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSED--ICGAVV 418
I P WED N+NGGRWLI++ +Q +++ W E+L+ LIG +D ED ICGAV
Sbjct: 70 DIMPKWEDPKNENGGRWLINVTARQ---DVDFLWDELLMLLIGSDWDTDEEDRQICGAVF 126
Query: 419 NVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSST 476
R++G K+ +W S ++ + ILSIGR+IKERL + E I +Q D S+T +
Sbjct: 127 QPRSRGSKLSVWL--TSDNEEETILSIGRRIKERLEL--EDTIYFQPVSDQRSQTRGS 180
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 4 HPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYF------RSIDNEKELSQMSS 57
HPL + W+ + F+ K W+E ++ +FST+EDFW R I K+L S
Sbjct: 10 HPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKS 69
Query: 58 D 58
D
Sbjct: 70 D 70
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 242 HPLHNKWTLWYFENDKNKGWEENQREITSFST 273
HPL + W+ + F+ K W+E ++ +FST
Sbjct: 10 HPLQDSWSYYLFQFRKALDWDECLEKVATFST 41
>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp,
Nmr, 20 Structures
Length = 213
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 101/176 (57%), Gaps = 7/176 (3%)
Query: 299 IKHPLHNKWTLWYFEN--DKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYS 356
+KHPL+ KWTLWY + DK++ W + R +TSF TVE+FW + +I + +L + DY
Sbjct: 35 VKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYH 94
Query: 357 LFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGA 416
+F++ +RP WEDE N GG+W L + + ++++ WL LL +IGE D+ I G
Sbjct: 95 VFRNDVRPEWEDEANAKGGKWSFQL--RGKGADIDELWLRTLLAVIGETIDEDDSQINGV 152
Query: 417 VVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASR 472
V+++R G+K +WT + + +L IG K K+ L + + + + H R
Sbjct: 153 VLSIRKGGNKFALWTKSEDK---EPLLRIGGKFKQVLKLTDDGHLEFFPHSSANGR 205
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 2 IKHPLHNKWTLWYFEN--DKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQ 59
+KHPL+ KWTLWY + DK++ W + R +TSF TVE+FW ++I EL + SD
Sbjct: 35 VKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELP-LKSDY 93
Query: 60 SYYRPRTR 67
+R R
Sbjct: 94 HVFRNDVR 101
>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|B Chain B, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|C Chain C, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|D Chain D, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|E Chain E, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|F Chain F, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|G Chain G, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|H Chain H, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
Length = 178
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 100/188 (53%), Gaps = 13/188 (6%)
Query: 299 IKHPLHNKWTLWY---FENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDY 355
+ H L N WT W+ K W + R I +FSTVE+FW ++N+I L VG D+
Sbjct: 1 MPHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADF 60
Query: 356 SLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICG 415
FK I P WED NGG+W + + + + WL LL +IGE F D+ ++ICG
Sbjct: 61 YCFKHKIEPKWEDPICANGGKWTANYPKGKSDTS----WLYTLLAMIGEQF-DHGDEICG 115
Query: 416 AVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSS 475
AVVNVR + +KI IWT +AS + +SIG++ KE L ++ D A +
Sbjct: 116 AVVNVRGRAEKISIWTKNASNEAAQ--VSIGKQWKEFLDYNETMGFIFH---DDARKLDR 170
Query: 476 TSKNSFTL 483
+KN + +
Sbjct: 171 NAKNKYVV 178
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 2 IKHPLHNKWTLWY---FENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELS 53
+ H L N WT W+ K W + R I +FSTVE+FW + +I + +L+
Sbjct: 1 MPHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLA 55
>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation
Factor Eif4e In Complex With M7gdp And Eif4gi Residues
393 To 490
Length = 213
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 7/176 (3%)
Query: 299 IKHPLHNKWTLWYFEN--DKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYS 356
+KHPL+ KWTLWY + DK++ W + R +TSF TVE+FW + +I + +L + DY
Sbjct: 35 VKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYH 94
Query: 357 LFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGA 416
+F++ +RP WEDE N GG+W L K ++++ WL LL +IGE D+ I G
Sbjct: 95 VFRNDVRPEWEDEANAKGGKWSFQLCGK--GADIDELWLCTLLAVIGETIDEDDSQINGV 152
Query: 417 VVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASR 472
V+++R G+K +WT + +L IG K K+ L + + + + H R
Sbjct: 153 VLSIRKGGNKFALWT---KCEDKEPLLRIGGKFKQVLKLTDDGHLEFFPHCSANGR 205
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 2 IKHPLHNKWTLWYFEN--DKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQ 59
+KHPL+ KWTLWY + DK++ W + R +TSF TVE+FW ++I EL + SD
Sbjct: 35 VKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELP-LKSDY 93
Query: 60 SYYRPRTR 67
+R R
Sbjct: 94 HVFRNDVR 101
>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With
M7gtp
pdb|2JGC|A Chain A, Structure Of The Human Eif4e Homologous Protein, 4ehp
Without Ligand Bound
Length = 195
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 99/175 (56%), Gaps = 12/175 (6%)
Query: 300 KHPLHNKWTLWYFENDKNK-----GWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCD 354
+HPL +T WY + +E+N ++I +F++VE FW ++H+ + DL D
Sbjct: 14 EHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSD 73
Query: 355 YSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDIC 414
+ LFK GI+PMWED+ NKNGG+W+I L RK +S W ++L ++GE F E+IC
Sbjct: 74 FHLFKEGIKPMWEDDANKNGGKWIIRL-RKGLASRC---WENLILAMLGEQF-MVGEEIC 128
Query: 415 GAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDT 469
GAVV+VR + D I IW AS + I ++ L + + Y++H D+
Sbjct: 129 GAVVSVRFQEDIISIWNKTASDQATTA--RIRDTLRRVLNLPPNTIMEYKTHTDS 181
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 3 KHPLHNKWTLWYFENDKNK-----GWEENQREITSFSTVEDFWWYFRSIDNEKELSQMS 56
+HPL +T WY + +E+N ++I +F++VE FW ++ + +L+ S
Sbjct: 14 EHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHS 72
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene
Expression Via A Novel Mode Of Recognition Of The
Methyl-7 Guanosine Cap Moiety
Length = 207
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 13/173 (7%)
Query: 302 PLHNKWTLWYFENDKNKGWEE---NQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLF 358
PLH+ WT W + E N ++I + TV+ FW V+N+I + L + C Y L
Sbjct: 31 PLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLM 90
Query: 359 KSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYS---EDICG 415
+ RP+WE+E+N GG W + + + S+ W E+LL IGE F D + ++I G
Sbjct: 91 RGERRPLWEEESNAKGGVWKMKVPKDSTST----VWKELLLATIGEQFTDCAAADDEIIG 146
Query: 416 AVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRD 468
V+VR + D + +W V+AS +L KI + L A + Y+ H +
Sbjct: 147 VSVSVRDREDVVQVWNVNASLVGEATVL---EKIHQLLPHIAFKAVFYKPHEE 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,492,244
Number of Sequences: 62578
Number of extensions: 471059
Number of successful extensions: 1101
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 47
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)