Query psy8922
Match_columns 483
No_of_seqs 285 out of 946
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 22:54:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1670|consensus 100.0 2.9E-57 6.3E-62 430.6 17.3 182 297-483 31-212 (212)
2 KOG1669|consensus 100.0 1.4E-49 3E-54 369.5 12.2 192 276-476 7-201 (208)
3 PF01652 IF4E: Eukaryotic init 100.0 2E-47 4.3E-52 352.0 17.2 162 302-466 1-165 (165)
4 PTZ00040 translation initiatio 100.0 2.5E-44 5.3E-49 350.3 16.8 167 298-467 35-231 (233)
5 COG5053 CDC33 Translation init 100.0 7E-42 1.5E-46 321.4 14.0 176 291-469 27-204 (217)
6 KOG1670|consensus 100.0 3.9E-31 8.5E-36 252.2 5.8 84 2-98 33-116 (212)
7 PTZ00040 translation initiatio 99.9 1.3E-26 2.9E-31 226.2 8.0 83 2-97 36-137 (233)
8 KOG1669|consensus 99.9 2.2E-26 4.7E-31 214.9 3.4 94 2-108 28-129 (208)
9 PF01652 IF4E: Eukaryotic init 99.9 5.4E-25 1.2E-29 203.0 6.6 79 5-96 1-82 (165)
10 COG5053 CDC33 Translation init 99.9 2.4E-22 5.1E-27 189.9 4.4 83 1-96 34-118 (217)
11 PF08939 DUF1917: Domain of un 94.4 0.29 6.3E-06 49.3 9.9 82 372-466 148-237 (243)
12 PF08977 BOFC_N: Bypass of For 23.1 53 0.0012 26.0 1.6 31 327-360 20-50 (51)
13 PF11525 CopK: Copper resistan 23.0 39 0.00086 28.4 0.9 22 346-368 9-30 (73)
No 1
>KOG1670|consensus
Probab=100.00 E-value=2.9e-57 Score=430.56 Aligned_cols=182 Identities=55% Similarity=1.063 Sum_probs=175.2
Q ss_pred ccccCCCCcceEEEEEeCCCccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCcCCCCCCcE
Q psy8922 297 LMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGR 376 (483)
Q Consensus 297 ~~~~HpLq~~WTfWy~~~~~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWEDp~N~nGGr 376 (483)
...+|||++.|||||.+++++.+|++.|+.|++|+|||+||++|++|++||+|+.+|||++||+||+||||||+|+||||
T Consensus 31 ~~~~hpL~~~WTlW~l~~d~~ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~~GGr 110 (212)
T KOG1670|consen 31 NHIKHPLQNNWTLWFLKNDRNKSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANKNGGR 110 (212)
T ss_pred cccccccccceeEEeecCCccccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCccccCCCe
Confidence 34589999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC
Q psy8922 377 WLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIG 456 (483)
Q Consensus 377 wiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~LK~~L~L~ 456 (483)
|.|.++++ +++.+|++|.++|||+|||+|+ ++++|||+|+++|+++++||||++++ +|++.+.+||..+|++|+++
T Consensus 111 W~~~~~k~-~k~~lD~~WL~tLlalIGE~fd-~~deICGaV~NiR~k~~KISvWT~~~--~ne~~~l~IG~~~Ke~L~~~ 186 (212)
T KOG1670|consen 111 WLITVPKS-GKAELDELWLETLLALIGEQFD-HSDEICGAVVNIRGKGDKISVWTKNA--GNEEAVLRIGRVLKEVLGLP 186 (212)
T ss_pred EEEEecCc-chhhHHHHHHHHHHHHHhhhcc-ccccceeEEEEeccCCceEEEEecCC--CchHHHHHHHHHHHHHhCCC
Confidence 99999987 5678999999999999999998 79999999999999999999999999 89999999999999999998
Q ss_pred CcceEEEEecccccccCCCCCcceeEC
Q psy8922 457 AEYQIVYQSHRDTASRTSSTSKNSFTL 483 (483)
Q Consensus 457 ~~~~I~YksH~~s~~~~gs~~k~~y~~ 483 (483)
+ .+|.|..|+++++++||..|++|++
T Consensus 187 ~-~~i~y~~H~ds~~k~~s~~K~~~tv 212 (212)
T KOG1670|consen 187 R-DVIGYQLHKDSSKKSGSTAKNRYTV 212 (212)
T ss_pred c-ceEEEEechhhHhhcCCcccceecC
Confidence 7 7899999999999999999999986
No 2
>KOG1669|consensus
Probab=100.00 E-value=1.4e-49 Score=369.51 Aligned_cols=192 Identities=32% Similarity=0.654 Sum_probs=175.5
Q ss_pred cccccccCcCccccCccccccccccCCCCcceEEEEEeCC---CccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCC
Q psy8922 276 EQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFEND---KNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVG 352 (483)
Q Consensus 276 e~~~~~~~~~~~~~~~~~~~~~~~~HpLq~~WTfWy~~~~---~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~g 352 (483)
|+..+.+++.+..+.+. +.+.+.|||++..+|||..+. .+++|++++++|++|.|||+||++|.|+++|+.|+..
T Consensus 7 ek~~~vkn~~s~~r~a~--v~~d~dh~l~y~~t~~y~~r~~Gv~~qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~ 84 (208)
T KOG1669|consen 7 EKSHYVKNSVSEERRAR--VLMDMDHPLQYVYTFWYERRTPGVSKQSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQ 84 (208)
T ss_pred hhhhhhccchhhhhccc--cCCCCCCcceEEEEEEEEecCCCCChhhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCc
Confidence 44445566666666554 357779999999999999863 4789999999999999999999999999999999999
Q ss_pred cceeEEcCCCccCCCcCCCCCCcEEEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEecc
Q psy8922 353 CDYSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTV 432 (483)
Q Consensus 353 sd~~LFK~GIkPmWEDp~N~nGGrwiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~k 432 (483)
+++||||+||+|+|||++|.|||+|+|+++| +.+.++||+||+|++||||. .+++|||+|+|+|.++++||||++
T Consensus 85 ~dih~FKeGIkPvWED~aN~nGgkWiirlkK----~vs~R~wE~LLlal~geqf~-~~e~icGaV~svr~nediiSiWnR 159 (208)
T KOG1669|consen 85 FDIHFFKEGIKPVWEDKANCNGGKWIIRLKK----GVSQRYWENLLLALCGEQFK-VGEEICGAVGSVRFNEDIISIWNR 159 (208)
T ss_pred eeehhhhccCcccccCcCCCCCCeEEEEehH----HHHHHHHHHHHHHHHhhhhc-ccccccceeEEEeccchhhhhhcC
Confidence 9999999999999999999999999999988 57899999999999999997 599999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCCCcceEEEEecccccccCCCC
Q psy8922 433 DASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSST 476 (483)
Q Consensus 433 d~~~sne~~v~~I~~~LK~~L~L~~~~~I~YksH~~s~~~~gs~ 476 (483)
++ ++.++..+|++.||.+|+||+++.++||.|.+++++.+|.
T Consensus 160 na--~dta~~~~irdtLk~~L~lp~~~vmeYK~H~~~Lr~~~sl 201 (208)
T KOG1669|consen 160 NA--SDTADTGRIRDTLKRVLELPFNTVMEYKNHDDSLRDHSSL 201 (208)
T ss_pred CC--CcchhHHHHHHHHHHHhcCCcceEEEecchhhhhhccccc
Confidence 99 7899999999999999999999999999999999987664
No 3
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs. eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....
Probab=100.00 E-value=2e-47 Score=351.96 Aligned_cols=162 Identities=47% Similarity=0.976 Sum_probs=148.9
Q ss_pred CCCcceEEEEEeC---CCccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCcCCCCCCcEEE
Q psy8922 302 PLHNKWTLWYFEN---DKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWL 378 (483)
Q Consensus 302 pLq~~WTfWy~~~---~~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWEDp~N~nGGrwi 378 (483)
||+++|||||+.. +++.+|++++++|++|+|||+||++|++|++|++|+.+++|+|||+||+||||||+|++||+|+
T Consensus 1 pL~~~Wt~w~~~~~~~~~~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~~ 80 (165)
T PF01652_consen 1 PLQNKWTFWYDKKQKNSKSDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRWI 80 (165)
T ss_dssp EEEEEEEEEEEECCCCCTTSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEEE
T ss_pred CcCCEEEEEEEecCCCCchhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEEE
Confidence 7999999999953 3458999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCCc
Q psy8922 379 ISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAE 458 (483)
Q Consensus 379 iri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~LK~~L~L~~~ 458 (483)
|++++.. ...+|++|+++||++|||+|+..+++||||++|+|+++++|+||++++ ++++.+.+|++.|+++|+++++
T Consensus 81 i~~~~~~-~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~iW~~~~--~~~~~~~~i~~~i~~~l~~~~~ 157 (165)
T PF01652_consen 81 IRIKKKN-KEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISIWNKDS--SDEDAQNRIGKKIKEILNLPPN 157 (165)
T ss_dssp EEEETTC-HHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEEEESST--T-HHHHHHHHHHHHHHHTTTTT
T ss_pred EEEcCcc-chhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEEecCCC--CCHHHHHHHHHHHHHHhCcCCC
Confidence 9999853 357999999999999999997434899999999999999999999998 7888899999999999999999
Q ss_pred ceEEEEec
Q psy8922 459 YQIVYQSH 466 (483)
Q Consensus 459 ~~I~YksH 466 (483)
..|+|++|
T Consensus 158 ~~~~y~~H 165 (165)
T PF01652_consen 158 TKIEYKSH 165 (165)
T ss_dssp SEEEEEEH
T ss_pred CeEEEecC
Confidence 99999999
No 4
>PTZ00040 translation initiation factor E4; Provisional
Probab=100.00 E-value=2.5e-44 Score=350.26 Aligned_cols=167 Identities=26% Similarity=0.519 Sum_probs=144.3
Q ss_pred cccCCCCcceEEEEEeCC----CccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcc---------------eeEE
Q psy8922 298 MIKHPLHNKWTLWYFEND----KNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCD---------------YSLF 358 (483)
Q Consensus 298 ~~~HpLq~~WTfWy~~~~----~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd---------------~~LF 358 (483)
...|||+++|||||+.++ ++.+|++++++|++|+|||+||++|+||++||+|+.+++ ||||
T Consensus 35 ~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~lF 114 (233)
T PTZ00040 35 STPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMIF 114 (233)
T ss_pred CCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeeee
Confidence 457999999999998763 457899999999999999999999999999999999874 9999
Q ss_pred cCCCccCCCcCCCCCCcEEEEEecCCc-CchhHHHHHHHHHHHHccCcccCCCCCcceEEE----EEcCCCcEEEEeccC
Q psy8922 359 KSGIRPMWEDETNKNGGRWLISLDRKQ-RSSELNAFWLEILLCLIGEAFDDYSEDICGAVV----NVRAKGDKIGIWTVD 433 (483)
Q Consensus 359 K~GIkPmWEDp~N~nGGrwiiri~k~~-~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVv----SvR~~~~rIsIW~kd 433 (483)
|+||+||||||+|++||+|+|++.+.. ..+.+|++|++|||++|||+|+ .+++||||+| |+|++.++|+||+++
T Consensus 115 K~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~-~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~ 193 (233)
T PTZ00040 115 KDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLE-HSSLINGIRLVDKLSGRFGVIRIEIWFTN 193 (233)
T ss_pred cCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCC-CCcccccEEEeeecccCCCCcEEEEEeCC
Confidence 999999999999999999999997632 2357999999999999999996 4899999996 677889999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhC--CC----CcceEEEEecc
Q psy8922 434 ASRSKSDGILSIGRKIKERLG--IG----AEYQIVYQSHR 467 (483)
Q Consensus 434 ~~~sne~~v~~I~~~LK~~L~--L~----~~~~I~YksH~ 467 (483)
+ +|++.+.+|++.|+++|. +. ...++.-++|+
T Consensus 194 ~--~d~~~~~~i~~~i~~~l~~~l~~~~~~~~~~~~~~h~ 231 (233)
T PTZ00040 194 L--GDQSDRNQLMKEIETCMARRLDGSSGFPPKFDLKSHS 231 (233)
T ss_pred C--CCHHHHHHHHHHHHHHHHHhcCcceecCCcceeeccc
Confidence 9 788889999999988662 21 12345556665
No 5
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-42 Score=321.44 Aligned_cols=176 Identities=36% Similarity=0.723 Sum_probs=162.4
Q ss_pred ccccccccccCCCCcceEEEEEeCC--CccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCc
Q psy8922 291 PEVESELMIKHPLHNKWTLWYFEND--KNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWED 368 (483)
Q Consensus 291 ~~~~~~~~~~HpLq~~WTfWy~~~~--~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWED 368 (483)
..++......|||+..|||||..++ ..+.|++.|+.|++|+|||+||++.++|+.++.||..|+|++||+||+|+|||
T Consensus 27 ~~~~~~f~~~hpl~~~wtlw~l~p~e~g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWED 106 (217)
T COG5053 27 LSDSAHFMNKHPLAFHWTLWFLKPPEDGLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWED 106 (217)
T ss_pred hcchhhHhhcCccccceEEEEecCCccchhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccc
Confidence 3444456788999999999999875 34669999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHH
Q psy8922 369 ETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRK 448 (483)
Q Consensus 369 p~N~nGGrwiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~ 448 (483)
++|+|||+|.+.++.+- .+.++++|...++++|||++++.+.+|||||++.|+.+++|+||++++ .|++.+.+|+.+
T Consensus 107 eaN~~Ggkws~qlk~~g-~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~--~n~dvl~~ig~e 183 (217)
T COG5053 107 EANMNGGKWSFQLKGKG-CDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNC--NNKDVLGAIGNE 183 (217)
T ss_pred cccCCCCeEEEEccccc-chhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCC--CcHHHHHHHHHH
Confidence 99999999999998653 356999999999999999999888899999999999999999999999 899999999999
Q ss_pred HHHHhCCCCcceEEEEecccc
Q psy8922 449 IKERLGIGAEYQIVYQSHRDT 469 (483)
Q Consensus 449 LK~~L~L~~~~~I~YksH~~s 469 (483)
+|.+|+|+....|+|++|..+
T Consensus 184 fk~vl~ls~~~tle~k~heSs 204 (217)
T COG5053 184 FKQVLELSDVETLEYKAHESS 204 (217)
T ss_pred HHhcccccceeEEEecccccc
Confidence 999999999999999999743
No 6
>KOG1670|consensus
Probab=99.96 E-value=3.9e-31 Score=252.16 Aligned_cols=84 Identities=40% Similarity=0.813 Sum_probs=78.7
Q ss_pred CCCCCCCceEEEEEcCCCCcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCCceEeCCCCccccccCCCCCCccc
Q psy8922 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGIRT 81 (483)
Q Consensus 2 ~~HPLq~~WTfWyd~~~~~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sdyhlFK~GIkP~WED~~N~~GGr~ 81 (483)
.+||||+.|||||++++++++|++.|++|++|+|||+||++|+||++||+|+. +||||+||+||+|||
T Consensus 33 ~~hpL~~~WTlW~l~~d~~ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~-~sDy~lFk~gI~PmW----------- 100 (212)
T KOG1670|consen 33 IKHPLQNNWTLWFLKNDRNKSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNR-GSDYSLFKKGIRPMW----------- 100 (212)
T ss_pred cccccccceeEEeecCCccccHHHHhhhccccccHHHHHHHHhccCChhhCCc-cccHHHHhcCCCccc-----------
Confidence 47999999999999999999999999999999999999999999999999986 899999999999999
Q ss_pred ccCCCCCCCceEEEeec
Q psy8922 82 TTRPTCTKPGIRTITST 98 (483)
Q Consensus 82 ~eDp~n~~GGkW~i~~~ 98 (483)
|||+|++||+|+|+..
T Consensus 101 -ED~~N~~GGrW~~~~~ 116 (212)
T KOG1670|consen 101 -EDPANKNGGRWLITVP 116 (212)
T ss_pred -cCccccCCCeEEEEec
Confidence 6677788999999744
No 7
>PTZ00040 translation initiation factor E4; Provisional
Probab=99.93 E-value=1.3e-26 Score=226.22 Aligned_cols=83 Identities=19% Similarity=0.401 Sum_probs=73.4
Q ss_pred CCCCCCCceEEEEEcCC----CCcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCC---------------ceEe
Q psy8922 2 IKHPLHNKWTLWYFEND----KNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSD---------------QSYY 62 (483)
Q Consensus 2 ~~HPLq~~WTfWyd~~~----~~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sd---------------yhlF 62 (483)
.+|||+++|||||+.+. ++.+|+++|++|++|+|||+||++||||++||+|+. +++ ||||
T Consensus 36 ~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~-~~~~~r~~~~~~~~~~~~~~lF 114 (233)
T PTZ00040 36 TPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLT-GKRMIRESSDGSEHVVDAVMIF 114 (233)
T ss_pred CCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHccc-ccccccccccccccccceeeee
Confidence 46999999999999874 357899999999999999999999999999999986 664 9999
Q ss_pred CCCCccccccCCCCCCcccccCCCCCCCceEEEee
Q psy8922 63 RPRTRAITSSTRTEPGIRTTTRPTCTKPGIRTITS 97 (483)
Q Consensus 63 K~GIkP~WED~~N~~GGr~~eDp~n~~GGkW~i~~ 97 (483)
|+||+||| |||.|.+||+|+++.
T Consensus 115 K~GIkP~W------------EDp~N~~GG~w~~~~ 137 (233)
T PTZ00040 115 KDGIQPMW------------EDPMNATGGHFEYRF 137 (233)
T ss_pred cCCCeECc------------CCCCcCCCCEEEEEe
Confidence 99999999 556667789998873
No 8
>KOG1669|consensus
Probab=99.92 E-value=2.2e-26 Score=214.87 Aligned_cols=94 Identities=20% Similarity=0.492 Sum_probs=85.7
Q ss_pred CCCCCCCceEEEEEcCCC---CcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCCceEeCCCCccccccCCCCCC
Q psy8922 2 IKHPLHNKWTLWYFENDK---NKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPG 78 (483)
Q Consensus 2 ~~HPLq~~WTfWyd~~~~---~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sdyhlFK~GIkP~WED~~N~~G 78 (483)
+.||||+..+|||..... +.+|++++|+|++|+|||+||++|.|+++|+.|+. ..|+||||+||+|+|
T Consensus 28 ~dh~l~y~~t~~y~~r~~Gv~~qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~-~~dih~FKeGIkPvW-------- 98 (208)
T KOG1669|consen 28 MDHPLQYVYTFWYERRTPGVSKQSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDR-QFDIHFFKEGIKPVW-------- 98 (208)
T ss_pred CCCcceEEEEEEEEecCCCCChhhHHHHhHhheeeeeHHHHHHHHHHhcCccccCC-ceeehhhhccCcccc--------
Confidence 369999999999999864 57999999999999999999999999999999987 899999999999999
Q ss_pred cccccCCCCCCCceEEEe-----eccccccceeee
Q psy8922 79 IRTTTRPTCTKPGIRTIT-----STACTEPGIRTI 108 (483)
Q Consensus 79 Gr~~eDp~n~~GGkW~i~-----~~~~~~~~~~~~ 108 (483)
||++|.|||||+|+ |+||||+++-.+
T Consensus 99 ----ED~aN~nGgkWiirlkK~vs~R~wE~LLlal 129 (208)
T KOG1669|consen 99 ----EDKANCNGGKWIIRLKKGVSQRYWENLLLAL 129 (208)
T ss_pred ----cCcCCCCCCeEEEEehHHHHHHHHHHHHHHH
Confidence 55666789999998 999999998654
No 9
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs. eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....
Probab=99.91 E-value=5.4e-25 Score=203.02 Aligned_cols=79 Identities=32% Similarity=0.672 Sum_probs=70.0
Q ss_pred CCCCceEEEEEcCC---CCcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCCceEeCCCCccccccCCCCCCccc
Q psy8922 5 PLHNKWTLWYFEND---KNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGIRT 81 (483)
Q Consensus 5 PLq~~WTfWyd~~~---~~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sdyhlFK~GIkP~WED~~N~~GGr~ 81 (483)
||++.|||||+... +..+|.++|++|++|+|||+||++|+||++||+|+. +++|||||+||+|||
T Consensus 1 pL~~~Wt~w~~~~~~~~~~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~-~~~~~lFk~gI~P~W----------- 68 (165)
T PF01652_consen 1 PLQNKWTFWYDKKQKNSKSDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPK-GSNYHLFKKGIKPMW----------- 68 (165)
T ss_dssp EEEEEEEEEEEECCCCCTTSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-T-TEEEEEEETTC-SST-----------
T ss_pred CcCCEEEEEEEecCCCCchhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCC-CcceeeeecccccCC-----------
Confidence 79999999999543 358999999999999999999999999999999986 899999999999999
Q ss_pred ccCCCCCCCceEEEe
Q psy8922 82 TTRPTCTKPGIRTIT 96 (483)
Q Consensus 82 ~eDp~n~~GGkW~i~ 96 (483)
|||.|.+||+|+++
T Consensus 69 -EDp~N~~GG~~~i~ 82 (165)
T PF01652_consen 69 -EDPANKNGGRWIIR 82 (165)
T ss_dssp -TSTTTTTSEEEEEE
T ss_pred -CCccCCCccEEEEE
Confidence 55666789999997
No 10
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.4e-22 Score=189.89 Aligned_cols=83 Identities=29% Similarity=0.627 Sum_probs=74.1
Q ss_pred CCCCCCCCceEEEEEcCCC--CcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCCceEeCCCCccccccCCCCCC
Q psy8922 1 MIKHPLHNKWTLWYFENDK--NKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPG 78 (483)
Q Consensus 1 ~~~HPLq~~WTfWyd~~~~--~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sdyhlFK~GIkP~WED~~N~~G 78 (483)
+.+|||++.|||||..++. .+.|++.|+.|++|+|||+||++.+||+.++.+|. .|||++||+||||+|||
T Consensus 34 ~~~hpl~~~wtlw~l~p~e~g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lpr-ksdynvFreGIrPeWED------ 106 (217)
T COG5053 34 MNKHPLAFHWTLWFLKPPEDGLESWSDLLKSIITFETVEEFWYILHNISDASRLPR-KSDYNVFREGIRPEWED------ 106 (217)
T ss_pred hhcCccccceEEEEecCCccchhHHHHHHhhheeeecHHHHHHHHhcCCcccccch-hhhHHHHHcCCCccccc------
Confidence 3579999999999999974 35599999999999999999999999999999986 79999999999999955
Q ss_pred cccccCCCCCCCceEEEe
Q psy8922 79 IRTTTRPTCTKPGIRTIT 96 (483)
Q Consensus 79 Gr~~eDp~n~~GGkW~i~ 96 (483)
++|++||+|.+.
T Consensus 107 ------eaN~~Ggkws~q 118 (217)
T COG5053 107 ------EANMNGGKWSFQ 118 (217)
T ss_pred ------cccCCCCeEEEE
Confidence 455668888886
No 11
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins.; PDB: 1ZTP_B 2Q4K_C.
Probab=94.39 E-value=0.29 Score=49.26 Aligned_cols=82 Identities=16% Similarity=0.370 Sum_probs=55.3
Q ss_pred CCCcEEEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEc------CCCcEEEEeccCCCCCChHHHHHH
Q psy8922 372 KNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVR------AKGDKIGIWTVDASRSKSDGILSI 445 (483)
Q Consensus 372 ~nGGrwiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR------~~~~rIsIW~kd~~~sne~~v~~I 445 (483)
.-.|||+|-++. ..+|++|..+.-+++.+.+. +++-||.+ .+...|.|.+.|. .|.+.+.++
T Consensus 148 v~sGKWmlf~~~----~~vd~~W~~Va~at~~g~Lg------~~AKVst~~~~~~~~~~~vIcVYT~Df--~D~~DV~RV 215 (243)
T PF08939_consen 148 VTSGKWMLFPPP----DRVDEIWSKVAKATADGELG------ISAKVSTGPEDDDGDDRRVICVYTPDF--RDREDVMRV 215 (243)
T ss_dssp ---EEEEEEE-T----THHHHHHHHHHHHHHTTSS-------SEEEE-----B-TTSS-EEEEEEES-T--T-HHHHHHH
T ss_pred cccceeEEEcCH----HHHHHHHHHHHHHHHcCCce------eeEEecccCCCCCCCCCEEEEEECCCC--CCHHHHHHH
Confidence 458999999976 36999999999999988773 35555551 2246799999999 899999999
Q ss_pred HHHHHHHhCCCC--cceEEEEec
Q psy8922 446 GRKIKERLGIGA--EYQIVYQSH 466 (483)
Q Consensus 446 ~~~LK~~L~L~~--~~~I~YksH 466 (483)
.+.|++. |+-. +..|.||+-
T Consensus 216 l~~Lr~~-gl~~~~~~~i~YK~D 237 (243)
T PF08939_consen 216 LRRLREL-GLVDPDGRPIYYKPD 237 (243)
T ss_dssp HHHHHHT-T--S-----EEEEEH
T ss_pred HHHHHHc-CCccccccceeecCc
Confidence 9999876 7644 347899874
No 12
>PF08977 BOFC_N: Bypass of Forespore C, N terminal; InterPro: IPR015071 The N-terminal domain of, bypass of forespore C, is composed of a four-stranded beta-sheet covered by an alpha-helix. The beta-sheet has a beta2-beta1-beta4-beta3 topology, where strands beta1 and beta2 and strands beta3 and beta4 are connected by beta-turns, whereas strands beta2 and beta3 are joined by an alpha-helix that runs across one face of the beta-sheet. This domain is similar to the third immunoglobulin G-binding domain of protein G from Streptococcus, the latter belonging to a large and diverse group of cell surface-associated proteins that bind to immunoglobulins. It has been hypothesised that this domain may be a mediator of protein-protein interactions involved in proteolytic events at the cell surface []. ; PDB: 2BW2_A.
Probab=23.11 E-value=53 Score=25.97 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=23.2
Q ss_pred eeeeecHHHHHHHhcCCcccCCCCCCcceeEEcC
Q psy8922 327 ITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKS 360 (483)
Q Consensus 327 I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~ 360 (483)
-.++-|.|+||+-|..-.-. ...-++.+||+
T Consensus 20 ~Eti~s~ed~w~~Y~~WqLv---~q~~~~ivFrk 50 (51)
T PF08977_consen 20 EETIWSMEDFWAKYKGWQLV---DQDDDQIVFRK 50 (51)
T ss_dssp EEEEEEHHHHHHHSTTSEEE---EEETTEEEEEE
T ss_pred EeeeccHHHHHHhhcCcEEE---EccCCEEEEEc
Confidence 45889999999999986543 34457778874
No 13
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=22.95 E-value=39 Score=28.39 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=16.7
Q ss_pred cCCCCCCcceeEEcCCCccCCCc
Q psy8922 346 ASDLRVGCDYSLFKSGIRPMWED 368 (483)
Q Consensus 346 pS~L~~gsd~~LFK~GIkPmWED 368 (483)
.-+|..|+.+|+||+|-.-| ||
T Consensus 9 si~LkDGstvyiFKDGKMam-Ed 30 (73)
T PF11525_consen 9 SIPLKDGSTVYIFKDGKMAM-ED 30 (73)
T ss_dssp EEEBTTSEEEEEETTS-EEE-EE
T ss_pred eEecCCCCEEEEEcCCceeh-hh
Confidence 34688899999999997654 55
Done!