Query psy8922
Match_columns 483
No_of_seqs 285 out of 946
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 22:54:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m94_A Translation initiation 100.0 3.3E-58 1.1E-62 434.7 19.0 183 299-483 1-183 (189)
2 1l8b_A Eukaryotic translation 100.0 2E-57 6.7E-62 429.1 17.3 186 296-483 5-190 (190)
3 1ipb_A Eukaryotic translation 100.0 5.5E-57 1.9E-61 434.3 18.6 186 296-483 32-217 (217)
4 3hxi_A Eukaryotic translation 100.0 1.4E-56 4.6E-61 423.6 14.4 182 297-483 6-189 (189)
5 1ap8_A Translation initiation 100.0 3.9E-54 1.3E-58 413.5 21.8 187 289-483 25-213 (213)
6 2idr_A Eukaryotic translation 100.0 1.6E-54 5.6E-59 405.2 17.3 174 300-483 1-177 (177)
7 4axg_A Eukaryotic translation 100.0 2.6E-54 9E-59 422.9 19.5 185 295-483 64-248 (248)
8 2jgb_A Eukaryotic translation 100.0 4E-54 1.4E-58 408.1 17.6 178 297-481 11-193 (195)
9 3m94_A Translation initiation 100.0 2.6E-30 8.9E-35 244.2 6.2 83 2-97 1-83 (189)
10 1l8b_A Eukaryotic translation 100.0 1.1E-29 3.6E-34 239.9 7.0 82 2-96 8-89 (190)
11 2idr_A Eukaryotic translation 100.0 5.8E-30 2E-34 239.3 3.7 92 3-107 1-100 (177)
12 1ipb_A Eukaryotic translation 100.0 2.1E-29 7.3E-34 242.5 7.0 95 1-108 34-137 (217)
13 3hxi_A Eukaryotic translation 100.0 2E-29 6.9E-34 238.1 5.3 94 2-108 8-107 (189)
14 2jgb_A Eukaryotic translation 99.9 2.3E-29 7.9E-34 238.5 2.9 98 2-112 13-120 (195)
15 1ap8_A Translation initiation 99.9 1.1E-28 3.8E-33 237.0 7.0 83 2-97 35-119 (213)
16 4axg_A Eukaryotic translation 99.9 4.8E-28 1.6E-32 237.2 7.1 99 1-112 67-173 (248)
17 1ztp_A Basophilic leukemia exp 99.4 2E-12 6.8E-17 126.6 10.6 98 369-483 121-221 (251)
18 2k0q_A Putative uncharacterize 21.7 29 0.001 28.1 1.1 22 346-368 9-30 (74)
No 1
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=100.00 E-value=3.3e-58 Score=434.67 Aligned_cols=183 Identities=49% Similarity=0.980 Sum_probs=170.6
Q ss_pred ccCCCCcceEEEEEeCCCccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCcCCCCCCcEEE
Q psy8922 299 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWL 378 (483)
Q Consensus 299 ~~HpLq~~WTfWy~~~~~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWEDp~N~nGGrwi 378 (483)
++|||+++|||||+..+++.+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+|+
T Consensus 1 ~~HpL~~~Wt~W~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GGkw~ 80 (189)
T 3m94_A 1 MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGRWL 80 (189)
T ss_dssp CCCEEEEEEEEEEECCCSSSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCEEEE
T ss_pred CCCCCCCcEEEEEECCCCccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCCEEE
Confidence 47999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCCc
Q psy8922 379 ISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAE 458 (483)
Q Consensus 379 iri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~LK~~L~L~~~ 458 (483)
|+++|..+++.+|++|++|||++|||+|++.+++|||||||+|+++++|+||++++ ++++.+..|++.||++|+++++
T Consensus 81 i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsIW~~~~--~~~~~~~~Ig~~lk~~L~l~~~ 158 (189)
T 3m94_A 81 VVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDS--LKDDVNLRIGQILKAKLEIPDT 158 (189)
T ss_dssp EEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEEEESCT--TCHHHHHHHHHHHHHHHTCCTT
T ss_pred EEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEEECCCC--CCHHHHHHHHHHHHHHhCcCCC
Confidence 99998655568999999999999999997678999999999999999999999999 7889999999999999999999
Q ss_pred ceEEEEecccccccCCCCCcceeEC
Q psy8922 459 YQIVYQSHRDTASRTSSTSKNSFTL 483 (483)
Q Consensus 459 ~~I~YksH~~s~~~~gs~~k~~y~~ 483 (483)
..|+|++|+++++++||++|++|+|
T Consensus 159 ~~i~y~~H~d~~~~~~s~~k~~~~v 183 (189)
T 3m94_A 159 EPIRYEVHKDSSVRTGSMVKPRIVI 183 (189)
T ss_dssp SCEEEEECC-----CCSCCCCSEEE
T ss_pred CEEEEEEchHhhhccCCCCceEEEE
Confidence 9999999999999999999999986
No 2
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=100.00 E-value=2e-57 Score=429.10 Aligned_cols=186 Identities=62% Similarity=1.173 Sum_probs=169.6
Q ss_pred cccccCCCCcceEEEEEeCCCccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCcCCCCCCc
Q psy8922 296 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGG 375 (483)
Q Consensus 296 ~~~~~HpLq~~WTfWy~~~~~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWEDp~N~nGG 375 (483)
+....|||+++|||||+.++++.+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||
T Consensus 5 ~~~~~hpL~~~Wt~W~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~GG 84 (190)
T 1l8b_A 5 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGG 84 (190)
T ss_dssp ----CCEEEEEEEEEEEECCSSSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTCE
T ss_pred cccccCCCCCeEEEEEEcCCCccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCCCC
Confidence 45578999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCC
Q psy8922 376 RWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGI 455 (483)
Q Consensus 376 rwiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~LK~~L~L 455 (483)
+|+|++++....+.+|++|++|||++|||+|++++++|||||+|+|+++++|+||++++ ++++.+..|++.|+++|++
T Consensus 85 ~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~--~~~~~~~~I~~~lk~~L~l 162 (190)
T 1l8b_A 85 RWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTEC--ENRDAVTHIGRVYKERLGL 162 (190)
T ss_dssp EEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCT--TCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEEEcCCC--CCHHHHHHHHHHHHHHhCC
Confidence 99999998654467899999999999999996568999999999999999999999999 7889999999999999999
Q ss_pred CCcceEEEEecccccccCCCCCcceeEC
Q psy8922 456 GAEYQIVYQSHRDTASRTSSTSKNSFTL 483 (483)
Q Consensus 456 ~~~~~I~YksH~~s~~~~gs~~k~~y~~ 483 (483)
+++..|+|++|++++++.||..|++|+|
T Consensus 163 ~~~~~~~y~~H~d~~~~~~~~~~~~~~~ 190 (190)
T 1l8b_A 163 PPKIVIGYQSHADTATKSGSTTKNRFVV 190 (190)
T ss_dssp CTTSCCEEEEHHHHHTC-----CCSEEC
T ss_pred CCCCeEEEEEcHHHHhccCCCCceeeeC
Confidence 9999999999999999999999999986
No 3
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*
Probab=100.00 E-value=5.5e-57 Score=434.25 Aligned_cols=186 Identities=62% Similarity=1.169 Sum_probs=176.3
Q ss_pred cccccCCCCcceEEEEEeCCCccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCcCCCCCCc
Q psy8922 296 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGG 375 (483)
Q Consensus 296 ~~~~~HpLq~~WTfWy~~~~~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWEDp~N~nGG 375 (483)
+....|||+++|||||+.++++.+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||
T Consensus 32 e~~~~hpL~~~Wt~W~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~GG 111 (217)
T 1ipb_A 32 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGG 111 (217)
T ss_dssp GGTSCCEEEEEEEEEEECCCTTSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCE
T ss_pred ccccCCCCCCeEEEEEEeCCcccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCCCC
Confidence 45678999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCC
Q psy8922 376 RWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGI 455 (483)
Q Consensus 376 rwiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~LK~~L~L 455 (483)
+|+|++++......+|++|++|||++|||+|.+++++|||||+|+|+++++|+||++++ ++++.+..|++.|+++|++
T Consensus 112 kw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~--~~~~~~~~I~~~lk~~L~l 189 (217)
T 1ipb_A 112 RWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTEC--ENREAVTHIGRVYKERLGL 189 (217)
T ss_dssp EEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEEEESCT--TCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEEECCCC--CCHHHHHHHHHHHHHHhCC
Confidence 99999998654457899999999999999995568999999999999999999999999 7888999999999999999
Q ss_pred CCcceEEEEecccccccCCCCCcceeEC
Q psy8922 456 GAEYQIVYQSHRDTASRTSSTSKNSFTL 483 (483)
Q Consensus 456 ~~~~~I~YksH~~s~~~~gs~~k~~y~~ 483 (483)
+++..|+|++|++++++.||..|++|+|
T Consensus 190 ~~~~~i~y~~H~d~~~~~~s~~~~~~~~ 217 (217)
T 1ipb_A 190 PPKIVIGYQSHADTATKSGSTTKNRFVV 217 (217)
T ss_dssp CTTCCCEEEEGGGCCCSTTCCCCCSEEC
T ss_pred CCCCeEEEEEchHhhhccCCCCceeeeC
Confidence 9999999999999999999999999986
No 4
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=100.00 E-value=1.4e-56 Score=423.56 Aligned_cols=182 Identities=37% Similarity=0.775 Sum_probs=171.8
Q ss_pred ccccCCCCcceEEEEEeCCCccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCcCCCCCCcE
Q psy8922 297 LMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGR 376 (483)
Q Consensus 297 ~~~~HpLq~~WTfWy~~~~~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWEDp~N~nGGr 376 (483)
...+|||+++|||||+.++++.+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+
T Consensus 6 ~~~~HpL~~~Wt~W~~~~~~~~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~N~~GGk 85 (189)
T 3hxi_A 6 PEFPHPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNENGGR 85 (189)
T ss_dssp -CCCCEEEEEEEEEEECCCTTCCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHHHHTCEE
T ss_pred CCccCCCCCeEEEEEECCCCccChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCCcCCCCCcE
Confidence 45689999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCC--cceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhC
Q psy8922 377 WLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSED--ICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLG 454 (483)
Q Consensus 377 wiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~--IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~LK~~L~ 454 (483)
|+|++++.. .+|++|+++||++|||+|++++++ |||||+|+|+++++|+||++++ ++++.+.+|++.||++|+
T Consensus 86 w~i~~~k~~---~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsIW~~~~--~~~~~~~~I~~~~k~~L~ 160 (189)
T 3hxi_A 86 WLINVTARQ---DVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSD--NEEETILSIGRRIKERLE 160 (189)
T ss_dssp EEEECCTTS---CHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEEEESCS--CCHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCC---cHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEEEcCCC--CCHHHHHHHHHHHHHHcC
Confidence 999998753 589999999999999999545677 9999999999999999999999 788999999999999999
Q ss_pred CCCcceEEEEecccccccCCCCCcceeEC
Q psy8922 455 IGAEYQIVYQSHRDTASRTSSTSKNSFTL 483 (483)
Q Consensus 455 L~~~~~I~YksH~~s~~~~gs~~k~~y~~ 483 (483)
++++..|+|++|++++++.||+.|++|+|
T Consensus 161 l~~~~~i~y~~H~d~~~~~~s~~~~~~~~ 189 (189)
T 3hxi_A 161 LEDTIYFQPVSDQRSQTRGSDICTGKYEI 189 (189)
T ss_dssp CCSCCEEEEHHHHHHCCTTCC-CCCSEEC
T ss_pred cCCCCeEEEEEchhhhhcCCCCCCceEeC
Confidence 99999999999999999999999999997
No 5
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Probab=100.00 E-value=3.9e-54 Score=413.47 Aligned_cols=187 Identities=34% Similarity=0.750 Sum_probs=170.0
Q ss_pred cCccccccccccCCCCcceEEEEEeCCC--ccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCC
Q psy8922 289 TTPEVESELMIKHPLHNKWTLWYFENDK--NKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMW 366 (483)
Q Consensus 289 ~~~~~~~~~~~~HpLq~~WTfWy~~~~~--s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmW 366 (483)
+....+......|||+++|||||+.++. +.+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+|||
T Consensus 25 t~~~~~~~~~~~hpL~~~Wt~W~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~W 104 (213)
T 1ap8_A 25 TVLSDSAHFDVKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEW 104 (213)
T ss_dssp CSCCCCCCCCCSSEEEEEEEEEEECCCGGGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCT
T ss_pred eeeccCCCCCCccccCCcEEEEEEcCCcccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecc
Confidence 3444445666899999999999998864 67899999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCcEEEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHH
Q psy8922 367 EDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIG 446 (483)
Q Consensus 367 EDp~N~nGGrwiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~ 446 (483)
|||+|++||||+|+++.. .+.+|++|++|||++|||+|+...++|||||+|+|+++++|+||++++ +++.+..|+
T Consensus 105 EDp~N~~GGkw~i~~~~k--~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsIW~~~~---~~~~~~~Ig 179 (213)
T 1ap8_A 105 EDEANAKGGKWSFQLRGK--GADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSE---DKEPLLRIG 179 (213)
T ss_dssp TTTTTTTSEEEEEEECSC--CSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSS---CHHHHHHHH
T ss_pred cCCCCCCCCEEEEEECCC--cchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEEEcCCC---CHHHHHHHH
Confidence 999999999999999432 246899999999999999997644599999999999999999999997 788899999
Q ss_pred HHHHHHhCCCCcceEEEEecccccccCCCCCcceeEC
Q psy8922 447 RKIKERLGIGAEYQIVYQSHRDTASRTSSTSKNSFTL 483 (483)
Q Consensus 447 ~~LK~~L~L~~~~~I~YksH~~s~~~~gs~~k~~y~~ 483 (483)
+.|+++|+++.+..|+|++|+++++ +..|++|+|
T Consensus 180 ~~lk~~L~l~~~~~i~y~~H~d~~~---~~~k~~~~~ 213 (213)
T 1ap8_A 180 GKFKQVLKLTDDGHLEFFPHSSANG---RHPQPSITL 213 (213)
T ss_dssp HHHHHHTTCCSSCCCEEECGGGGGC---CCSCCSEEC
T ss_pred HHHHHHhCCCCCCeEEEEEchhhhc---ccCccceEC
Confidence 9999999999999999999999986 788999986
No 6
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=100.00 E-value=1.6e-54 Score=405.16 Aligned_cols=174 Identities=42% Similarity=0.852 Sum_probs=162.9
Q ss_pred cCCCCcceEEEEEeCC---CccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCcCCCCCCcE
Q psy8922 300 KHPLHNKWTLWYFEND---KNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGR 376 (483)
Q Consensus 300 ~HpLq~~WTfWy~~~~---~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWEDp~N~nGGr 376 (483)
+|||+++|||||+.+. ++.+|++++++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+
T Consensus 1 ~HpL~~~Wt~W~~~~~~~~~~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG~ 80 (177)
T 2idr_A 1 AHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGK 80 (177)
T ss_dssp CCEEEEEEEEEEECTTCSSCEEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCEE
T ss_pred CCCCCCeEEEEEEcCCCCCcccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCCE
Confidence 5999999999999863 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC
Q psy8922 377 WLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIG 456 (483)
Q Consensus 377 wiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~LK~~L~L~ 456 (483)
|+|+++|. .+|++|+++||++|||+|+ .+++|||||+|+|+++++|+||++++ +|++.+..|++.++++|++
T Consensus 81 w~i~~~k~----~~d~~W~~lll~~IGe~f~-~~d~IcGvvvsvR~~~~~IsIW~~~~--~~~~~~~~I~~~~k~~L~l- 152 (177)
T 2idr_A 81 WTISCGRG----KSDTFWLHTLLAMIGEQFD-FGDEICGAVVSVRQKQERVAIWTKNA--ANEAAQISIGKQWKEFLDY- 152 (177)
T ss_dssp EEEEECTT----CCHHHHHHHHHHHHTTCST-TGGGEEEEEEEECSSCEEEEEEESCT--TCHHHHHHHHHHHHHHHTC-
T ss_pred EEEEECcC----cHHHHHHHHHHHHhcCcCC-CCCceEEEEEEEecCCcEEEEEcCCC--CCHHHHHHHHHHHHHHhCC-
Confidence 99999874 5899999999999999996 48899999999999999999999999 7889999999999999998
Q ss_pred CcceEEEEecccccccCCCCCcceeEC
Q psy8922 457 AEYQIVYQSHRDTASRTSSTSKNSFTL 483 (483)
Q Consensus 457 ~~~~I~YksH~~s~~~~gs~~k~~y~~ 483 (483)
+..++|++|+++++++ +..|++|+|
T Consensus 153 -~~~~~y~~H~d~~~~~-~~~k~~~~~ 177 (177)
T 2idr_A 153 -KDSIGFIVHEDAKRSD-KGPKNRYTV 177 (177)
T ss_dssp -CSCCEEEEGGGGGSCS-SSCCCSEEC
T ss_pred -CCeEEEEEchhhhhcC-CCCccceEC
Confidence 4578999999999876 478999986
No 7
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=2.6e-54 Score=422.87 Aligned_cols=185 Identities=54% Similarity=1.082 Sum_probs=172.6
Q ss_pred ccccccCCCCcceEEEEEeCCCccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCcCCCCCC
Q psy8922 295 SELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNG 374 (483)
Q Consensus 295 ~~~~~~HpLq~~WTfWy~~~~~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWEDp~N~nG 374 (483)
.+...+|||+++|||||+.++++.+|++++++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++|
T Consensus 64 ~~~~~kHpL~~~WtlW~~~~~~~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~N~~G 143 (248)
T 4axg_A 64 TEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQG 143 (248)
T ss_dssp --CCCCCEEEEEEEEEEESCSCCCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTTTTTC
T ss_pred cccccCCCCCCeEEEEEeeCCCccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCccCCCc
Confidence 35667899999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhC
Q psy8922 375 GRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLG 454 (483)
Q Consensus 375 Grwiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~LK~~L~ 454 (483)
|+|+|++.|... ..+|++|++|+|++|||+|+ .+++|||||+|+|+++++|+||++++ ++++.+..|++.|+++|+
T Consensus 144 G~w~~~~~k~~~-~~~d~~W~~lll~~IGe~~~-~~~~I~Gi~is~R~~~~~I~IW~~~~--~~~~~~~~I~~~lk~~L~ 219 (248)
T 4axg_A 144 GRWVITLNKSSK-TDLDNLWLDVLLCLIGEAFD-HSDQICGAVINIRGKSNKISIWTADG--NNEEAALEIGHKLRDALR 219 (248)
T ss_dssp EEEEEEEETCCH-HHHHHHHHHHHHHHHTTCSS-CGGGEEEEEEEECSSEEEEEEEESCT--TCHHHHHHHHHHHHHHTT
T ss_pred cEEEEEecccch-hHHHHHHHHHHHHHHhCcCC-CCCceeceEEEecCCCCEEEEeCCCC--cCHHHHHHHHHHHHHHhC
Confidence 999999987543 57899999999999999996 58899999999999999999999999 889999999999999999
Q ss_pred CCCcceEEEEecccccccCCCCCcceeEC
Q psy8922 455 IGAEYQIVYQSHRDTASRTSSTSKNSFTL 483 (483)
Q Consensus 455 L~~~~~I~YksH~~s~~~~gs~~k~~y~~ 483 (483)
++.+..|+|++|++++++.||.+|++|+|
T Consensus 220 l~~~~~i~yk~H~ds~~~~~s~~k~~y~v 248 (248)
T 4axg_A 220 LGRNNSLQYQLHKDTMVKQGSNVKSIYTL 248 (248)
T ss_dssp CCTTSCEEEEETGGGCCCC--CCCCSEEC
T ss_pred CCCCCeEEEeehhhhhhccCCCCceeEeC
Confidence 99999999999999999999999999997
No 8
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=100.00 E-value=4e-54 Score=408.13 Aligned_cols=178 Identities=34% Similarity=0.723 Sum_probs=164.1
Q ss_pred ccccCCCCcceEEEEEeCC-----CccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCcCCC
Q psy8922 297 LMIKHPLHNKWTLWYFEND-----KNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETN 371 (483)
Q Consensus 297 ~~~~HpLq~~WTfWy~~~~-----~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWEDp~N 371 (483)
....|||+++|||||+... ++.+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|
T Consensus 11 ~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N 90 (195)
T 2jgb_A 11 GPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDAN 90 (195)
T ss_dssp CTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTTT
T ss_pred CCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCCC
Confidence 4578999999999999752 45789999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHHHHH
Q psy8922 372 KNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKE 451 (483)
Q Consensus 372 ~nGGrwiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~LK~ 451 (483)
++||+|+|+++|. .+|++|+++||++|||+|+ .+++|||||+|+|+++++|+||++++ ++++.+..|++.|++
T Consensus 91 ~~GGkw~i~~~k~----~~d~~W~~llLa~IGE~f~-~~d~IcGvvvsvR~~~~~IsIW~~~~--~~~~~~~~I~~~lk~ 163 (195)
T 2jgb_A 91 KNGGKWIIRLRKG----LASRCWENLILAMLGEQFM-VGEEICGAVVSVRFQEDIISIWNKTA--SDQATTARIRDTLRR 163 (195)
T ss_dssp TTCEEEEEEECTT----CHHHHHHHHHHHHHTTCSC-CTTCEEEEEEEECSSCEEEEEEESCT--TCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCcc----cHHHHHHHHHHHHhcCCCC-CCCceeeeEEEEecCCcEEEEEcCCC--CCHHHHHHHHHHHHH
Confidence 9999999999874 6899999999999999996 68999999999999999999999999 788999999999999
Q ss_pred HhCCCCcceEEEEecccccccCCCCCccee
Q psy8922 452 RLGIGAEYQIVYQSHRDTASRTSSTSKNSF 481 (483)
Q Consensus 452 ~L~L~~~~~I~YksH~~s~~~~gs~~k~~y 481 (483)
+|+++++..|+|++|++++++.+|+.+.+|
T Consensus 164 ~L~l~~~~~~~y~~H~d~~~~~~s~~~~~~ 193 (195)
T 2jgb_A 164 VLNLPPNTIMEYKTHTDSIKMPGRLGPQRL 193 (195)
T ss_dssp HCCCCTTCCEEEEEHHHHHHCCC---CCCC
T ss_pred HhCCCCCCeEEEEEchHhhhcCCCcccccc
Confidence 999999999999999999998877766554
No 9
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=99.96 E-value=2.6e-30 Score=244.25 Aligned_cols=83 Identities=29% Similarity=0.675 Sum_probs=77.9
Q ss_pred CCCCCCCceEEEEEcCCCCcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCCceEeCCCCccccccCCCCCCccc
Q psy8922 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGIRT 81 (483)
Q Consensus 2 ~~HPLq~~WTfWyd~~~~~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sdyhlFK~GIkP~WED~~N~~GGr~ 81 (483)
++||||+.|||||++++++++|+++|++|++|+|||+||++||||++||+|+. ++||||||+||+|||
T Consensus 1 ~~HpL~~~Wt~W~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~-~~dy~lFK~gI~P~W----------- 68 (189)
T 3m94_A 1 MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTW-GSDYYLFKEGIKPMW----------- 68 (189)
T ss_dssp CCCEEEEEEEEEEECCCSSSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCT-TCEEEEEETTCCSST-----------
T ss_pred CCCCCCCcEEEEEECCCCccChhhhceEEEEEecHHHHHHHhhCCCChhHCCC-CCeEEEecCCcccCC-----------
Confidence 58999999999999998899999999999999999999999999999999986 899999999999999
Q ss_pred ccCCCCCCCceEEEee
Q psy8922 82 TTRPTCTKPGIRTITS 97 (483)
Q Consensus 82 ~eDp~n~~GGkW~i~~ 97 (483)
|||.|.+||+|+|+.
T Consensus 69 -ED~~N~~GGkw~i~~ 83 (189)
T 3m94_A 69 -EDENNVKGGRWLVVV 83 (189)
T ss_dssp -TSTTTTTCEEEEEEE
T ss_pred -CCCCCCCCCEEEEEe
Confidence 556667899999985
No 10
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=99.96 E-value=1.1e-29 Score=239.90 Aligned_cols=82 Identities=39% Similarity=0.758 Sum_probs=76.8
Q ss_pred CCCCCCCceEEEEEcCCCCcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCCceEeCCCCccccccCCCCCCccc
Q psy8922 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGIRT 81 (483)
Q Consensus 2 ~~HPLq~~WTfWyd~~~~~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sdyhlFK~GIkP~WED~~N~~GGr~ 81 (483)
.+|||++.|||||+.++++++|+++|++|++|+|||+||++||||++||+|+. ++||||||+||+|||
T Consensus 8 ~~hpL~~~Wt~W~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~-~~~y~lFK~gI~P~W----------- 75 (190)
T 1l8b_A 8 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMP-GCDYSLFKDGIEPMW----------- 75 (190)
T ss_dssp -CCEEEEEEEEEEEECCSSSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCT-TEEEEEEETTCCSST-----------
T ss_pred ccCCCCCeEEEEEEcCCCccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCC-CCEEEEECCCceecc-----------
Confidence 57999999999999999899999999999999999999999999999999986 899999999999999
Q ss_pred ccCCCCCCCceEEEe
Q psy8922 82 TTRPTCTKPGIRTIT 96 (483)
Q Consensus 82 ~eDp~n~~GGkW~i~ 96 (483)
|||.|.+||+|+++
T Consensus 76 -ED~~N~~GG~w~i~ 89 (190)
T 1l8b_A 76 -EDEKNKRGGRWLIT 89 (190)
T ss_dssp -TSTTTTTCEEEEEE
T ss_pred -cCCCCCCCCEEEEE
Confidence 55667789999997
No 11
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=99.95 E-value=5.8e-30 Score=239.27 Aligned_cols=92 Identities=29% Similarity=0.598 Sum_probs=80.4
Q ss_pred CCCCCCceEEEEEcCC---CCcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCCceEeCCCCccccccCCCCCCc
Q psy8922 3 KHPLHNKWTLWYFEND---KNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGI 79 (483)
Q Consensus 3 ~HPLq~~WTfWyd~~~---~~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sdyhlFK~GIkP~WED~~N~~GG 79 (483)
+|||++.|||||+.+. ++++|+++|++|++|+|||+||++||||++||+|+. ++||||||+||+|||
T Consensus 1 ~HpL~~~Wt~W~~~~~~~~~~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~-~~~~~lFK~gI~P~W--------- 70 (177)
T 2idr_A 1 AHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNV-GADFHCFKNKIEPKW--------- 70 (177)
T ss_dssp CCEEEEEEEEEEECTTCSSCEEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCT-TCEEEEEEGGGCCST---------
T ss_pred CCCCCCeEEEEEEcCCCCCcccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCC-CCEEEEEcCCceecc---------
Confidence 6999999999999975 367899999999999999999999999999999986 899999999999999
Q ss_pred ccccCCCCCCCceEEEe-----eccccccceee
Q psy8922 80 RTTTRPTCTKPGIRTIT-----STACTEPGIRT 107 (483)
Q Consensus 80 r~~eDp~n~~GGkW~i~-----~~~~~~~~~~~ 107 (483)
|||.|.+||+|+++ +.++|+.++-.
T Consensus 71 ---ED~~N~~GG~w~i~~~k~~~d~~W~~lll~ 100 (177)
T 2idr_A 71 ---EDPICANGGKWTISCGRGKSDTFWLHTLLA 100 (177)
T ss_dssp ---TCCTTTTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred ---cCCCCCCCCEEEEEECcCcHHHHHHHHHHH
Confidence 55666789999997 44555555443
No 12
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*
Probab=99.95 E-value=2.1e-29 Score=242.46 Aligned_cols=95 Identities=34% Similarity=0.624 Sum_probs=83.7
Q ss_pred CCCCCCCCceEEEEEcCCCCcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCCceEeCCCCccccccCCCCCCcc
Q psy8922 1 MIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGIR 80 (483)
Q Consensus 1 ~~~HPLq~~WTfWyd~~~~~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sdyhlFK~GIkP~WED~~N~~GGr 80 (483)
+++|||++.|||||+.++++++|+++|++|++|+|||+||++||||++||+|+. ++||||||+||+|||
T Consensus 34 ~~~hpL~~~Wt~W~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~-~~dy~lFK~GI~P~W---------- 102 (217)
T 1ipb_A 34 YIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMP-GCDYSLFKDGIEPMW---------- 102 (217)
T ss_dssp TSCCEEEEEEEEEEECCCTTSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCT-TCEEEEEETTCCSST----------
T ss_pred ccCCCCCCeEEEEEEeCCcccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCC-CCEEEEECCCceecc----------
Confidence 367999999999999999899999999999999999999999999999999986 899999999999999
Q ss_pred cccCCCCCCCceEEEee---------ccccccceeee
Q psy8922 81 TTTRPTCTKPGIRTITS---------TACTEPGIRTI 108 (483)
Q Consensus 81 ~~eDp~n~~GGkW~i~~---------~~~~~~~~~~~ 108 (483)
|||.|.+||+|+|+. .++|+.++-.+
T Consensus 103 --EDp~N~~GGkw~i~~~k~~~~~~ld~~W~~llLa~ 137 (217)
T 1ipb_A 103 --EDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCL 137 (217)
T ss_dssp --TSTTTTTCEEEEEECCTTHHHHTHHHHHHHHHHHH
T ss_pred --cCCCCCCCCEEEEEeccccCcchHHHHHHHHHHHH
Confidence 556667899999973 45555555443
No 13
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=99.95 E-value=2e-29 Score=238.12 Aligned_cols=94 Identities=21% Similarity=0.439 Sum_probs=82.5
Q ss_pred CCCCCCCceEEEEEcCCCCcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCCceEeCCCCccccccCCCCCCccc
Q psy8922 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGIRT 81 (483)
Q Consensus 2 ~~HPLq~~WTfWyd~~~~~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sdyhlFK~GIkP~WED~~N~~GGr~ 81 (483)
.+||||++|||||++++++++|+++|++|++|+|||+||++||||++||+|+. ++||||||+||+|||||
T Consensus 8 ~~HpL~~~Wt~W~~~~~~~~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~-~~d~~lFK~gI~P~WED--------- 77 (189)
T 3hxi_A 8 FPHPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITY-GKDLYMFKSDIMPKWED--------- 77 (189)
T ss_dssp CCCEEEEEEEEEEECCCTTCCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCT-TCEEEEEETTSCSSTTS---------
T ss_pred ccCCCCCeEEEEEECCCCccChhhhceEEEEEeeHHHHHHHHHhCCChHHCCC-CceEEEECCCcccCCCC---------
Confidence 57999999999999998889999999999999999999999999999999986 89999999999999955
Q ss_pred ccCCCCCCCceEEEee------ccccccceeee
Q psy8922 82 TTRPTCTKPGIRTITS------TACTEPGIRTI 108 (483)
Q Consensus 82 ~eDp~n~~GGkW~i~~------~~~~~~~~~~~ 108 (483)
|.|++||+|+|+. .++|+.++-.+
T Consensus 78 ---~~N~~GGkw~i~~~k~~~~d~~W~~lll~~ 107 (189)
T 3hxi_A 78 ---PKNENGGRWLINVTARQDVDFLWDELLMLL 107 (189)
T ss_dssp ---HHHHTCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ---cCCCCCcEEEEEecCCCcHHHHHHHHHHHH
Confidence 5556799999973 35566555443
No 14
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=99.95 E-value=2.3e-29 Score=238.53 Aligned_cols=98 Identities=22% Similarity=0.505 Sum_probs=83.4
Q ss_pred CCCCCCCceEEEEEcCC-----CCcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCCceEeCCCCccccccCCCC
Q psy8922 2 IKHPLHNKWTLWYFEND-----KNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTE 76 (483)
Q Consensus 2 ~~HPLq~~WTfWyd~~~-----~~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sdyhlFK~GIkP~WED~~N~ 76 (483)
.+|||++.|||||+.+. +.++|+++|++|++|+|||+||++||||++||+|+. ++||||||+||+|||
T Consensus 13 ~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~-~~dy~lFK~gI~P~W------ 85 (195)
T 2jgb_A 13 AEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTG-HSDFHLFKEGIKPMW------ 85 (195)
T ss_dssp TCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCS-EEEEEEEETTCCSST------
T ss_pred CcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCC-CceEEEEeCCCcccc------
Confidence 47999999999999863 346899999999999999999999999999999986 899999999999999
Q ss_pred CCcccccCCCCCCCceEEEe-----eccccccceeeeeccc
Q psy8922 77 PGIRTTTRPTCTKPGIRTIT-----STACTEPGIRTITRST 112 (483)
Q Consensus 77 ~GGr~~eDp~n~~GGkW~i~-----~~~~~~~~~~~~~~~~ 112 (483)
|||.|.+||+|+|+ +.++|+.++-.+--.+
T Consensus 86 ------ED~~N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~ 120 (195)
T 2jgb_A 86 ------EDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQ 120 (195)
T ss_dssp ------TSTTTTTCEEEEEEECTTCHHHHHHHHHHHHHTTC
T ss_pred ------cCCCCCCCcEEEEEeCcccHHHHHHHHHHHHhcCC
Confidence 55666789999997 5566766654443333
No 15
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Probab=99.95 E-value=1.1e-28 Score=236.95 Aligned_cols=83 Identities=35% Similarity=0.642 Sum_probs=76.3
Q ss_pred CCCCCCCceEEEEEcCCC--CcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCCceEeCCCCccccccCCCCCCc
Q psy8922 2 IKHPLHNKWTLWYFENDK--NKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGI 79 (483)
Q Consensus 2 ~~HPLq~~WTfWyd~~~~--~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sdyhlFK~GIkP~WED~~N~~GG 79 (483)
.+|||++.|||||+.+++ .++|+++|++|++|+|||+||++||||++||+|+. ++||||||+||+|||
T Consensus 35 ~~hpL~~~Wt~W~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~-~~dy~lFK~GI~P~W--------- 104 (213)
T 1ap8_A 35 VKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPL-KSDYHVFRNDVRPEW--------- 104 (213)
T ss_dssp CSSEEEEEEEEEEECCCGGGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCS-CCEEEEECSSCCSCT---------
T ss_pred CccccCCcEEEEEEcCCcccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCC-CCEEEEEcCCceecc---------
Confidence 479999999999999875 67999999999999999999999999999999986 899999999999999
Q ss_pred ccccCCCCCCCceEEEee
Q psy8922 80 RTTTRPTCTKPGIRTITS 97 (483)
Q Consensus 80 r~~eDp~n~~GGkW~i~~ 97 (483)
|||.|.+||+|+|+.
T Consensus 105 ---EDp~N~~GGkw~i~~ 119 (213)
T 1ap8_A 105 ---EDEANAKGGKWSFQL 119 (213)
T ss_dssp ---TTTTTTTSEEEEEEE
T ss_pred ---cCCCCCCCCEEEEEE
Confidence 556667899999973
No 16
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=99.94 E-value=4.8e-28 Score=237.16 Aligned_cols=99 Identities=37% Similarity=0.637 Sum_probs=85.5
Q ss_pred CCCCCCCCceEEEEEcCCCCcchhhccceeEeeccHHHHHHhhcCCCCCCCcCCCCCCceEeCCCCccccccCCCCCCcc
Q psy8922 1 MIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGIR 80 (483)
Q Consensus 1 ~~~HPLq~~WTfWyd~~~~~~~w~~nLk~I~tF~TVEeFW~lYnhI~~PS~L~~l~sdyhlFK~GIkP~WED~~N~~GGr 80 (483)
+++|||++.|||||+.++++++|+++|++|++|+|||+||++||||++||+|+. +++|||||+||+|||
T Consensus 67 ~~kHpL~~~WtlW~~~~~~~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~-~~~~~lFK~gI~P~W---------- 135 (248)
T 4axg_A 67 LYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKL-GSDYSLFKKNIRPMW---------- 135 (248)
T ss_dssp CCCCEEEEEEEEEEESCSCCCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCT-TEEEEEEETTCCSSS----------
T ss_pred ccCCCCCCeEEEEEeeCCCccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCC-CceEEEEcCCcccCC----------
Confidence 368999999999999999999999999999999999999999999999999986 899999999999999
Q ss_pred cccCCCCCCCceEEEeec--------cccccceeeeeccc
Q psy8922 81 TTTRPTCTKPGIRTITST--------ACTEPGIRTITRST 112 (483)
Q Consensus 81 ~~eDp~n~~GGkW~i~~~--------~~~~~~~~~~~~~~ 112 (483)
|||.|.+||+|+++.. .+|+.++-.+.-.+
T Consensus 136 --ED~~N~~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~ 173 (248)
T 4axg_A 136 --EDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEA 173 (248)
T ss_dssp --SSTTTTTCEEEEEEEETCCHHHHHHHHHHHHHHHHTTC
T ss_pred --CCccCCCccEEEEEecccchhHHHHHHHHHHHHHHhCc
Confidence 5566678999999632 46666655444333
No 17
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A
Probab=99.36 E-value=2e-12 Score=126.62 Aligned_cols=98 Identities=24% Similarity=0.349 Sum_probs=86.2
Q ss_pred CCCCCCcEEEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCC---CcEEEEeccCCCCCChHHHHHH
Q psy8922 369 ETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAK---GDKIGIWTVDASRSKSDGILSI 445 (483)
Q Consensus 369 p~N~nGGrwiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~---~~rIsIW~kd~~~sne~~v~~I 445 (483)
+.|..||||+|.+.+. ..+|.+|+++++++|+++ +||++||.|.+ +++|+||++|. .|.+.+++|
T Consensus 121 ~~nv~gGKWLIfl~k~---~~VD~iW~~I~~ali~g~-------L~gAKVstr~~~~~~~vIcVYT~D~--~D~edV~RV 188 (251)
T 1ztp_A 121 THHVLSGKWLMHLAPG---FKLDHAWAGIARAVVEGR-------LQVAKVSPRAKEGGRQVICVYTDDF--TDRLGVLEA 188 (251)
T ss_dssp HHTCCCEEEEEEECSS---HHHHHHHHHHHHHHHHTS-------CSEEEECCBCSSSCCEEEEEEESCT--TCHHHHHHH
T ss_pred HcCCCCceEEEecChH---HHHHHHHHHHHHHHHhCc-------eeEEEEecCCCCCCCCEEEEECCCc--CCHHHHHHH
Confidence 5699999999999874 369999999999999543 59999999986 89999999999 899999999
Q ss_pred HHHHHHHhCCCCcceEEEEecccccccCCCCCcceeEC
Q psy8922 446 GRKIKERLGIGAEYQIVYQSHRDTASRTSSTSKNSFTL 483 (483)
Q Consensus 446 ~~~LK~~L~L~~~~~I~YksH~~s~~~~gs~~k~~y~~ 483 (483)
++.||+ ||+. ..|.||+|.+.+. |+..+++|.|
T Consensus 189 ~~~Lre-LGl~--~~I~YK~D~~T~~--Giy~~n~~~l 221 (251)
T 1ztp_A 189 DSAIRA-AGIK--CLLTYKPDVYTYL--GIYRANRWHL 221 (251)
T ss_dssp HHHHHH-TTCC--SCEEEEEHHHHHT--TCCSSCSSCC
T ss_pred HHHHHH-cCCC--cceeeccchHhhc--CCccCCccee
Confidence 999999 8986 6899999999875 7888887753
No 18
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=21.73 E-value=29 Score=28.05 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=17.1
Q ss_pred cCCCCCCcceeEEcCCCccCCCc
Q psy8922 346 ASDLRVGCDYSLFKSGIRPMWED 368 (483)
Q Consensus 346 pS~L~~gsd~~LFK~GIkPmWED 368 (483)
.-.|..|+.+|+||+|-.-| ||
T Consensus 9 ~v~LkDGstvyiFKDGKMam-Ed 30 (74)
T 2k0q_A 9 TYDLQDGSKVHVFKDGKMGM-EN 30 (74)
T ss_dssp EEEBTTSCEEEEETTSCEEE-EC
T ss_pred eEecCCCcEEEEEcCCceeh-hh
Confidence 34678899999999997654 44
Done!