RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8922
(483 letters)
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural
genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum}
PDB: 3m93_A*
Length = 189
Score = 213 bits (543), Expect = 2e-67
Identities = 89/185 (48%), Positives = 125/185 (67%), Gaps = 2/185 (1%)
Query: 299 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLF 358
++HPL W LWY + D++K WE+ +++ F TVEDFW ++NHI+ AS L G DY LF
Sbjct: 1 MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLF 60
Query: 359 KSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVV 418
K GI+PMWEDE N GGRWL+ +D+++R+ L+ +WLE+L+ +IGE F+D E ICGAVV
Sbjct: 61 KEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVV 120
Query: 419 NVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSSTSK 478
NVR KGDK+ +WT D+ K D L IG+ +K +L I I Y+ H+D++ RT S K
Sbjct: 121 NVRQKGDKVSLWTRDS--LKDDVNLRIGQILKAKLEIPDTEPIRYEVHKDSSVRTGSMVK 178
Query: 479 NSFTL 483
+
Sbjct: 179 PRIVI 183
Score = 68.2 bits (166), Expect = 2e-13
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSY 61
++HPL W LWY + D++K WE+ +++ F TVEDFW + I L+ SD
Sbjct: 1 MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWG-SDYYL 59
Query: 62 YRPRTRAITSSTRTEPGIR 80
++ + + G R
Sbjct: 60 FKEGIKPMWEDENNVKGGR 78
Score = 54.7 bits (131), Expect = 7e-09
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 240 IKHPLHNKWTLWYFENDKNKGWEENQREITSFST 273
++HPL W LWY + D++K WE+ +++ F T
Sbjct: 1 MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDT 34
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation
factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding
protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1
PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Length = 190
Score = 212 bits (541), Expect = 5e-67
Identities = 116/188 (61%), Positives = 145/188 (77%), Gaps = 2/188 (1%)
Query: 296 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDY 355
E IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW ++NHI+ +S+L GCDY
Sbjct: 5 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 64
Query: 356 SLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICG 415
SLFK GI PMWEDE NK GGRWLI+L+++QR S+L+ FWLE LLCLIGE+FDDYS+D+CG
Sbjct: 65 SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 124
Query: 416 AVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSS 475
AVVNVRAKGDKI IWT + D + IGR KERLG+ + I YQSH DTA+++ S
Sbjct: 125 AVVNVRAKGDKIAIWTTEC--ENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGS 182
Query: 476 TSKNSFTL 483
T+KN F +
Sbjct: 183 TTKNRFVV 190
Score = 65.1 bits (158), Expect = 2e-12
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSY 61
IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW + I L D S
Sbjct: 8 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPG-CDYSL 66
Query: 62 YRPRTRAITSSTRTEPGIR 80
++ + + + G R
Sbjct: 67 FKDGIEPMWEDEKNKRGGR 85
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis,
RNA binding protein; HET: GTA; 2.00A {Homo sapiens}
SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A*
2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A*
2w97_B*
Length = 217
Score = 209 bits (532), Expect = 2e-65
Identities = 118/212 (55%), Positives = 149/212 (70%), Gaps = 2/212 (0%)
Query: 272 STEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFS 331
+T P T E IKHPL N+W LW+F+NDK+K W+ N R I+ F
Sbjct: 8 TTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFD 67
Query: 332 TVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELN 391
TVEDFW ++NHI+ +S+L GCDYSLFK GI PMWEDE NK GGRWLI+L+++QR S+L+
Sbjct: 68 TVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLD 127
Query: 392 AFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKE 451
FWLE LLCLIGE+FDDYS+D+CGAVVNVRAKGDKI IWT + + + IGR KE
Sbjct: 128 RFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTEC--ENREAVTHIGRVYKE 185
Query: 452 RLGIGAEYQIVYQSHRDTASRTSSTSKNSFTL 483
RLG+ + I YQSH DTA+++ ST+KN F +
Sbjct: 186 RLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 217
Score = 62.9 bits (152), Expect = 1e-11
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSY 61
IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW + I L D S
Sbjct: 35 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPG-CDYSL 93
Query: 62 YRPRTRAITSSTRTEPG 78
++ + + + G
Sbjct: 94 FKDGIEPMWEDEKNKRG 110
Score = 52.9 bits (126), Expect = 4e-08
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 215 EKEQQPQENTTT-----TAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREIT 269
E E P N T T E IKHPL N+W LW+F+NDK+K W+ N R I+
Sbjct: 5 EPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLIS 64
Query: 270 SFST 273
F T
Sbjct: 65 KFDT 68
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex,
acetylation, phosphoprotein, protein synthesis
inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB:
3hxg_A*
Length = 189
Score = 202 bits (515), Expect = 4e-63
Identities = 66/187 (35%), Positives = 103/187 (55%), Gaps = 7/187 (3%)
Query: 299 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLF 358
HPL + W+ + F+ K W+E ++ +FST+EDFW V H + ++ G D +F
Sbjct: 8 FPHPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMF 67
Query: 359 KSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDY--SEDICGA 416
KS I P WED N+NGGRWLI++ +Q +++ W E+L+ LIG +D ICGA
Sbjct: 68 KSDIMPKWEDPKNENGGRWLINVTARQ---DVDFLWDELLMLLIGSDWDTDEEDRQICGA 124
Query: 417 VVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSST 476
V R++G K+ +W ++ + ILSIGR+IKERL + S + + +R S
Sbjct: 125 VFQPRSRGSKLSVWLTSD--NEEETILSIGRRIKERLELEDTIYFQPVSDQRSQTRGSDI 182
Query: 477 SKNSFTL 483
+ +
Sbjct: 183 CTGKYEI 189
Score = 69.7 bits (170), Expect = 5e-14
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 2 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSS 57
HPL + W+ + F+ K W+E ++ +FST+EDFW +E++
Sbjct: 8 FPHPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKD 63
Score = 53.5 bits (128), Expect = 2e-08
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 240 IKHPLHNKWTLWYFENDKNKGWEENQREITSFST 273
HPL + W+ + F+ K W+E ++ +FST
Sbjct: 8 FPHPLQDSWSYYLFQFRKALDWDECLEKVATFST 41
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic
initiation factor 4E, EIF4E, translation regulator;
1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Length = 177
Score = 193 bits (492), Expect = 8e-60
Identities = 75/186 (40%), Positives = 104/186 (55%), Gaps = 13/186 (6%)
Query: 301 HPLHNKWTLWYF---ENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSL 357
HPL N WT W+ + W I +FSTVEDFW ++N+I S L VG D+
Sbjct: 2 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 358 FKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAV 417
FK+ I P WED NGG+W IS R + + FWL LL +IGE F D+ ++ICGAV
Sbjct: 62 FKNKIEPKWEDPICANGGKWTISCGRGK----SDTFWLHTLLAMIGEQF-DFGDEICGAV 116
Query: 418 VNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSSTS 477
V+VR K +++ IWT +A + +SIG++ KE L + I + H D A R+
Sbjct: 117 VSVRQKQERVAIWTKNA--ANEAAQISIGKQWKEFLDY--KDSIGFIVHED-AKRSDKGP 171
Query: 478 KNSFTL 483
KN +T+
Sbjct: 172 KNRYTV 177
Score = 62.3 bits (151), Expect = 1e-11
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 4 HPLHNKWTLWYF---ENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQS 60
HPL N WT W+ + W I +FSTVEDFW + +I N +L+ +D
Sbjct: 2 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVG-ADFH 60
Query: 61 YYRPRTRAITSSTRTEPGIR 80
++ + G +
Sbjct: 61 CFKNKIEPKWEDPICANGGK 80
Score = 45.7 bits (108), Expect = 6e-06
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 242 HPLHNKWTLWYF---ENDKNKGWEENQREITSFST 273
HPL N WT W+ + W I +FST
Sbjct: 2 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFST 36
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR
{Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Length = 213
Score = 193 bits (490), Expect = 4e-59
Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 7/206 (3%)
Query: 272 STEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFEN--DKNKGWEENQREITS 329
+E ++TT T T + +KHPL+ KWTLWY + DK++ W + R +TS
Sbjct: 8 KKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTS 67
Query: 330 FSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSE 389
F TVE+FW + +I + +L + DY +F++ +RP WEDE N GG+W L + ++
Sbjct: 68 FQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRG--KGAD 125
Query: 390 LNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKI 449
++ WL LL +IGE D+ I G V+++R G+K +WT + + +L IG K
Sbjct: 126 IDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDK---EPLLRIGGKF 182
Query: 450 KERLGIGAEYQIVYQSHRDTASRTSS 475
K+ L + + + + H R
Sbjct: 183 KQVLKLTDDGHLEFFPHSSANGRHPQ 208
Score = 61.7 bits (149), Expect = 4e-11
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 2 IKHPLHNKWTLWYFEN--DKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQ 59
+KHPL+ KWTLWY + DK++ W + R +TSF TVE+FW ++I EL SD
Sbjct: 35 VKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLK-SDY 93
Query: 60 SYYRPRTRAITSSTRTEPGIRTTTRPTCTKPGI 92
+R R G + + + I
Sbjct: 94 HVFRNDVRPEWEDEANAKGGKWSFQLRGKGADI 126
>2jgb_A Eukaryotic translation initiation factor 4E type 2;
phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation,
CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Length = 195
Score = 179 bits (456), Expect = 2e-54
Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 12/189 (6%)
Query: 300 KHPLHNKWTLWYFEND-----KNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCD 354
+HPL +T WY ++ +E+N ++I +F++VE FW ++H+ + DL D
Sbjct: 14 EHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSD 73
Query: 355 YSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDIC 414
+ LFK GI+PMWED+ NKNGG+W+I L + + W ++L ++GE F E+IC
Sbjct: 74 FHLFKEGIKPMWEDDANKNGGKWIIRLRKGL----ASRCWENLILAMLGEQF-MVGEEIC 128
Query: 415 GAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTS 474
GAVV+VR + D I IW A S I ++ L + + Y++H D+
Sbjct: 129 GAVVSVRFQEDIISIWNKTA--SDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMPG 186
Query: 475 STSKNSFTL 483
Sbjct: 187 RLGPQRLLF 195
Score = 60.9 bits (147), Expect = 6e-11
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 3 KHPLHNKWTLWYFEND-----KNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSS 57
+HPL +T WY ++ +E+N ++I +F++VE FW ++ + +L+ S
Sbjct: 14 EHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGH-S 72
Query: 58 DQSYYRPRTRAITSSTRTEPGIRTTTR 84
D ++ + + + G + R
Sbjct: 73 DFHLFKEGIKPMWEDDANKNGGKWIIR 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 6e-04
Identities = 46/280 (16%), Positives = 85/280 (30%), Gaps = 59/280 (21%)
Query: 160 ELEPLLVPLALRRELELLLVVLELSRELEPSLALSRELEPLLVP--PTLSRELEPLLEKE 217
L+ + L LLL L+ + P L+ P + R+ +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNPRRLSIIAESIRDGLATWDNW 347
Query: 218 QQPQENTTTTAVTTPEVESELMIKHPLHNK---WTLWYFENDKN-------KGWEENQRE 267
+ + TT +ES L + P + L F + W + +
Sbjct: 348 KHVNCDKLTTI-----IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 268 ITSFSTEK-------EQQPQENTTTTAVTTPEVESELMIKHP----LHNKWTLWYFENDK 316
K E+QP+E+T ++ P + EL +K LH Y
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKEST----ISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 317 NKGWEENQREITSFSTVEDFWCVF--NHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNG 374
+ ++ ++ +H+K +LF R ++ D
Sbjct: 459 FDSDDL------IPPYLDQYFYSHIGHHLKNIEHPE---RMTLF----RMVFLDF----- 500
Query: 375 GRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDIC 414
R+ L++K R +L + + Y IC
Sbjct: 501 -RF---LEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYIC 535
Score = 30.2 bits (67), Expect = 1.9
Identities = 40/346 (11%), Positives = 95/346 (27%), Gaps = 102/346 (29%)
Query: 222 ENTTTTAVTTPEVESELMIKHPLHNKWTL-WYFEN--------------DKNKGW----- 261
++ + ++ E++ +M K + L W + N +
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 262 --EENQREI--TSFSTEKEQQPQENTTTTAVTTPEVESELMIKHPLHN------------ 305
E+ Q + + ++++ +N ++ L ++ L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 306 ----KWTL-------WYFENDKNKG--WEENQREITSFSTVEDFWCVFNHIKQASDLRVG 352
K + + + + W + + + +E + I +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSR 216
Query: 353 CDYSL--------FKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWL--------- 395
D+S ++ +R + + + +N L+ L Q + NAF L
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 396 --------------EILLCLIGEAF-DDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSD 440
I L D + + ++ R + D R
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ---------DLPREVLT 324
Query: 441 G---ILS-IGRKIKERLGIGAEYQIVYQSHRDTASRTSSTSKNSFT 482
LS I I++ L ++ + D + +S N
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLE 367
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation,
heme biosynthesis, iron, iron-sulfur, lyase, membrane,
metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo
sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A*
2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 3aqi_A*
2pnj_A* 2po5_A* 2po7_A*
Length = 359
Score = 29.5 bits (67), Expect = 2.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 447 RKIKERLGIGAEYQIVYQS 465
+K+ ERL Y++V+QS
Sbjct: 221 QKVMERLEYCNPYRLVWQS 239
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A
{Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Length = 362
Score = 29.1 bits (66), Expect = 3.0
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 447 RKIKERLGIGAEYQIVYQS 465
I ++L Y++V+QS
Sbjct: 226 YNIMQKLKFKNPYRLVWQS 244
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 4.4
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 171 RRELELLLVVLEL-SRELEPSLALSRELE 198
++ L+ L L+L + + P+LA+ +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus
subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A
3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A*
2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Length = 310
Score = 27.5 bits (62), Expect = 9.7
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 447 RKIKERLGIGAEYQIVYQS 465
+ I E G+ +EY + +QS
Sbjct: 205 KLIAEGAGV-SEYAVGWQS 222
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.396
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,045,727
Number of extensions: 406867
Number of successful extensions: 813
Number of sequences better than 10.0: 1
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 33
Length of query: 483
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 386
Effective length of database: 3,993,456
Effective search space: 1541474016
Effective search space used: 1541474016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 59 (27.0 bits)