RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8922
         (483 letters)



>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 182

 Score =  225 bits (575), Expect = 1e-72
 Identities = 114/183 (62%), Positives = 142/183 (77%), Gaps = 2/183 (1%)

Query: 300 KHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFK 359
           KHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW ++NHI+ +S+L  GCDYSLFK
Sbjct: 1   KHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFK 60

Query: 360 SGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVN 419
            GI PMWEDE NK GGRWLI+L+++QR S+L+ FWLE LLCLIGE+FDDYS+D+CGAVVN
Sbjct: 61  DGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVN 120

Query: 420 VRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSSTSKN 479
           VRAKGDKI IWT +      D +  IGR  KERLG+  +  I YQSH DTA+++ ST+KN
Sbjct: 121 VRAKGDKIAIWTTEC--ENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 178

Query: 480 SFT 482
            F 
Sbjct: 179 RFV 181



 Score = 71.5 bits (175), Expect = 3e-15
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 3  KHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYY 62
          KHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW  +  I   +  S +     Y 
Sbjct: 1  KHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHI---QLSSNLMPGCDYS 57



 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 241 KHPLHNKWTLWYFENDKNKGWEENQREITSFST 273
           KHPL N+W LW+F+NDK+K W+ N R I+ F T
Sbjct: 1   KHPLQNRWALWFFKNDKSKTWQANLRLISKFDT 33


>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 213

 Score =  198 bits (505), Expect = 9e-62
 Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 11/219 (5%)

Query: 268 ITSFSTEKEQQPQ-ENTTTTAVTTPEVESELMIKHPLHNKWTLWYFEN--DKNKGWEENQ 324
           +   S + E+    ++TT T  T     +   +KHPL+ KWTLWY +   DK++ W +  
Sbjct: 3   VEEVSKKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKPAVDKSESWSDLL 62

Query: 325 REITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWLISLDRK 384
           R +TSF TVE+FW +  +I +  +L +  DY +F++ +RP WEDE N  GG+W   L  +
Sbjct: 63  RPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQL--R 120

Query: 385 QRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILS 444
            + ++++  WL  LL +IGE  D+    I G V+++R  G+K  +WT    +   + +L 
Sbjct: 121 GKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDK---EPLLR 177

Query: 445 IGRKIKERLGIGAEYQIVYQSHRDTASRTSSTSKNSFTL 483
           IG K K+ L +  +  + +  H     R     + S TL
Sbjct: 178 IGGKFKQVLKLTDDGHLEFFPHSSANGR---HPQPSITL 213



 Score = 67.8 bits (165), Expect = 1e-13
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 2  IKHPLHNKWTLWYFEN--DKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQM 55
          +KHPL+ KWTLWY +   DK++ W +  R +TSF TVE+FW   ++I    EL   
Sbjct: 35 VKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLK 90



 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 222 ENTTTTAVTTPEVESELMIKHPLHNKWTLWYFEN--DKNKGWEENQREITSFST 273
           ++TT T  T     +   +KHPL+ KWTLWY +   DK++ W +  R +TSF T
Sbjct: 17  DDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQT 70


>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite
           reductase subunit alpha, DsrA {Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 185

 Score = 26.2 bits (57), Expect = 6.8
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 1   MIKHPLHNKWTLWYFENDKNKGWEENQRE 29
           M+K P +N +  +  +  K   + E  ++
Sbjct: 153 MVKAPRNNPFMFFEKDELKPSAYTEELKK 181



 Score = 26.2 bits (57), Expect = 6.8
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 239 MIKHPLHNKWTLWYFENDKNKGWEENQRE 267
           M+K P +N +  +  +  K   + E  ++
Sbjct: 153 MVKAPRNNPFMFFEKDELKPSAYTEELKK 181



 Score = 26.2 bits (57), Expect = 6.8
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 298 MIKHPLHNKWTLWYFENDKNKGWEENQRE 326
           M+K P +N +  +  +  K   + E  ++
Sbjct: 153 MVKAPRNNPFMFFEKDELKPSAYTEELKK 181


>d2j8ga1 b.109.1.1 (A:191-339) C-terminal domain of endolysin
           {Bacteriophage cp-1 [TaxId: 10747]}
          Length = 149

 Score = 26.0 bits (56), Expect = 8.0
 Identities = 10/50 (20%), Positives = 17/50 (34%)

Query: 13  WYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYY 62
           W  +N+K    ++N    T +  V   W+Y               +  YY
Sbjct: 54  WLKDNEKWYYLKDNGAMATGWVLVGSEWYYMDDSGAMVTGWVKYKNNWYY 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0535    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,753,304
Number of extensions: 79790
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 11
Length of query: 483
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 394
Effective length of database: 1,185,626
Effective search space: 467136644
Effective search space used: 467136644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.4 bits)