BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8923
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The
Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G
Length = 347
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF- 153
+++ D++ A+ AV L ++L RE QG+ES+ F+S F G+ Y EGG SGF
Sbjct: 68 QSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGG-VESGFK 126
Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPK 213
V + V RLY+V A +I + +S + F+LD G +F W G K
Sbjct: 127 HVVPNEVVVQRLYQVKG------AKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGK 180
Query: 214 A 214
+
Sbjct: 181 S 181
>pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein
(Cap G) With Actin-Severing Activity In The Ca2+-Free
Form
Length = 347
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF- 153
+++ D++ A+ AV L ++L RE QG+ES+ F+S F G+ Y EGG SGF
Sbjct: 68 QSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGG-VESGFK 126
Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPK 213
V + V RLY+V +I + +S + F+LD G +F W G K
Sbjct: 127 HVVPNEVVVQRLYQVKG------KKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGK 180
Query: 214 A 214
+
Sbjct: 181 S 181
>pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin
Length = 346
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF- 153
+ + D+ +AI V L ++L RE QG ES FL F +G+ Y +GG ASGF
Sbjct: 67 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFK 125
Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPK 213
V + V RL +V + VPV ES + F+LD G ++ W G K
Sbjct: 126 HVVPNEVVVQRLLQVKG------RRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSK 179
Query: 214 A 214
+
Sbjct: 180 S 180
>pdb|2FGH|A Chain A, Atp Bound Gelsolin
pdb|2FGH|B Chain B, Atp Bound Gelsolin
Length = 731
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 97 TLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF-FT 155
+ D+ +AI V L ++L RE QG ES FL F +G+ Y +GG ASGF
Sbjct: 70 SQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFKHV 128
Query: 156 VEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
V + V RL +V + VPV ES + F+LD G ++ W G K+
Sbjct: 129 VPNEVVVQRLLQVKG------RRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKS 181
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 90 NAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFN-------TGIS 142
N + ++T D+ A SAI L L R QG E +SLF G +
Sbjct: 441 NWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGGT 500
Query: 143 YIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDA 202
EGG+TA +TRL++V A + ++ +E +P +L+ F+L
Sbjct: 501 SREGGQTAPA---------STRLFQVRA---SSSGATRAVEIIPKAG-ALNSNDAFVLKT 547
Query: 203 GLKLFIWNGPKA 214
++W G A
Sbjct: 548 PSAAYLWVGAGA 559
>pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin.
pdb|1D0N|B Chain B, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin
Length = 729
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 97 TLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF-FT 155
+ D+ +AI V L ++L RE QG ES FL F +G+ Y +GG ASGF
Sbjct: 68 SQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFKHV 126
Query: 156 VEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
V + V RL +V + VPV ES + F+LD G ++ W G K+
Sbjct: 127 VPNEVVVQRLLQVKG------RRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKS 179
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 90 NAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFN-------TGIS 142
N + ++T D+ A SAI L L R QG E +SLF G +
Sbjct: 439 NWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGGT 498
Query: 143 YIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDA 202
EGG+TA +TRL++V A + ++ +E +P +L+ F+L
Sbjct: 499 SREGGQTAPA---------STRLFQVRA---SSSGATRAVEIIPKAG-ALNSNDAFVLKT 545
Query: 203 GLKLFIWNGPKA 214
++W G A
Sbjct: 546 PSAAYLWVGAGA 557
>pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|3FFK|D Chain D, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
Length = 377
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF- 153
+ + D+ +AI V L ++L RE QG ES FL F +G+ Y +GG ASGF
Sbjct: 70 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFK 128
Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNG 211
V + V RL++V + VPV ES + F+LD G + W G
Sbjct: 129 HVVPNEVVVQRLFQVKG------RRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCG 180
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 97 TLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF-FT 155
+ D+ +AI V L ++L RE QG ES FL F +G+ Y +GG ASGF
Sbjct: 121 SQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFKHV 179
Query: 156 VEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNG 211
V + V RL++V + VPV ES + F+LD G + W G
Sbjct: 180 VPNEVVVQRLFQVKG------RRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCG 229
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 90 NAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFN-------TGIS 142
N + ++T D+ A SAI L L R QG E +SLF G +
Sbjct: 492 NWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGT 551
Query: 143 YIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDA 202
EGG+TA +TRL++V A + ++ +E +P +L+ F+L
Sbjct: 552 SREGGQTAPA---------STRLFQVRA---NSAGATRAVEVLPKAG-ALNSNDAFVLKT 598
Query: 203 GLKLFIWNGPKA 214
++W G A
Sbjct: 599 PSAAYLWVGTGA 610
>pdb|2VIK|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t,
Determined By Solution Nmr, Minimized Average Structure
pdb|2VIL|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t,
Determined By Solution Nmr, 11 Structures
Length = 126
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 96 ATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
++ D++ +AI+ + +L + RE QG ESE F + F G+ Y +GG ASG
Sbjct: 69 SSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGG-VASGM 125
>pdb|1SVQ|A Chain A, Structure Of Severin Domain 2 In Solution
pdb|1SVR|A Chain A, Structure Of Severin Domain 2 In Solution
Length = 114
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 151 SGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWN 210
SGF V+ T Y RL LH + + + VP+ + SL+ FLLDAGL ++ +N
Sbjct: 1 SGFNHVKPTEYKPRL------LHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFN 54
Query: 211 GPKA 214
G K+
Sbjct: 55 GSKS 58
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 241 VFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273
FLLDAGL ++ +NG K+ K+K +A I
Sbjct: 41 CFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI 73
>pdb|1SVY|A Chain A, Severin Domain 2, 1.75 Angstrom Crystal Structure
Length = 114
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 151 SGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWN 210
SGF V+ T Y RL LH + + + VP+ + SL+ FLLDAGL ++ +N
Sbjct: 1 SGFNHVKPTEYKPRL------LHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFN 54
Query: 211 GPKA 214
G K+
Sbjct: 55 GSKS 58
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 242 FLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273
FLLDAGL ++ +NG K+ K+K +A I
Sbjct: 42 FLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI 73
>pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6
pdb|3FG7|B Chain B, The Crystal Structure Of Villin Domain 6
Length = 398
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 94 TKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
++A+ D+ SA AV L E IR G E +S+F + +GG + +
Sbjct: 113 SQASQDEITASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIFKGRMVVYQGGTSRTNN 172
Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNG 211
+T +TRL++V A++ VP + L+ VF+L ++W G
Sbjct: 173 L---ETGPSTRLFQVQG----TGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCG 223
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
T+ LS+ N++ +L +++ L LR L L +N+I++ V LF+ +DL LD+SHN +
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN-QDLEYLDVSHNRL 112
Query: 82 KQI 84
+ I
Sbjct: 113 QNI 115
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 19 TIGLTEHLSIVNNNLEKLFGELTELQCL----RTLNLRYNKIKNSGIPVDLFHLEDLTTL 74
T E + ++N + L G + +CL + L+L N+I IP D+ HL+ L L
Sbjct: 423 TCAWAESILVLNLSSNMLTGSV--FRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQEL 478
Query: 75 DLSHNNIKQIPDAL 88
+++ N +K +PD +
Sbjct: 479 NVASNQLKSVPDGV 492
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 51/122 (41%), Gaps = 25/122 (20%)
Query: 10 CMASKSESVTIGLT---EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIP 62
C + SV G+ + L + NN + KL F L LQ L +N K + IP
Sbjct: 19 CQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQ-----QLYFNSNKLTAIP 73
Query: 63 VDLFH-LEDLTTLDLSHNNIKQIP-DALENAKRTKATLDKRACSAIHAVNLRNFLAAECR 120
+F L LT LDL+ N++K IP A +N K S H N ECR
Sbjct: 74 TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLK-----------SLTHIYLYNNPWDCECR 122
Query: 121 TI 122
I
Sbjct: 123 DI 124
>pdb|3FG6|A Chain A, Structure Of The C-terminus Of Adseverin
pdb|3FG6|C Chain C, Structure Of The C-terminus Of Adseverin
pdb|3FG6|G Chain G, Structure Of The C-terminus Of Adseverin
pdb|3FG6|E Chain E, Structure Of The C-terminus Of Adseverin
pdb|3FG6|F Chain F, Structure Of The C-terminus Of Adseverin
pdb|3FG6|H Chain H, Structure Of The C-terminus Of Adseverin
pdb|3FG6|D Chain D, Structure Of The C-terminus Of Adseverin
pdb|3FG6|B Chain B, Structure Of The C-terminus Of Adseverin
Length = 371
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 96 ATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTG--ISYIEGGRTASGF 153
AT D+ SA V L L + IR QG E LSLF I Y G G
Sbjct: 101 ATRDELTTSAFLTVQLDRSLGGQAVQIRVSQGKEPVHLLSLFKDKPLIIYKNGTSKKGG- 159
Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLL----DAGLKLFIW 209
+ TRL++V L AS + V V + SL+ VF+L ++G +IW
Sbjct: 160 ---QAPAPPTRLFQVRRNL----ASITRIVEVDVDANSLNSNDVFVLKLPQNSG---YIW 209
Query: 210 NGPKA 214
G A
Sbjct: 210 VGKGA 214
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 118 ECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQA 177
+C+T+R ++G+E EEF + Y S + + RLY +
Sbjct: 230 KCKTLRIQEGEEPEEFWNSLGGKKDY-----QTSPLLETQAEDHPPRLYGCS-----NKT 279
Query: 178 SSIHLEPVP--VLSESLDPRFVFLLDAGLKLFIWNGPKA 214
+E +P + L V LLDA ++FIW G A
Sbjct: 280 GRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDA 318
>pdb|1H1V|G Chain G, Gelsolin G4-G6ACTIN COMPLEX
Length = 331
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 90 NAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFN-------TGIS 142
N + ++T D+ A SAI L L R QG E +SLF G +
Sbjct: 54 NWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGT 113
Query: 143 YIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDA 202
EGG+TA +TRL++V A + ++ +E +P +L+ F+L
Sbjct: 114 SREGGQTAPA---------STRLFQVRA---NSAGATRAVEVLPKAG-ALNSNDAFVLKT 160
Query: 203 GLKLFIWNGPKA 214
++W G A
Sbjct: 161 PSAAYLWVGTGA 172
>pdb|1P8X|A Chain A, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|B Chain B, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|C Chain C, The Calcium-activated C-terminal Half Of Gelsolin
pdb|2FH1|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH2|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH3|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH4|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
Length = 344
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 90 NAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFN-------TGIS 142
N + ++T D+ A SAI L L R QG E +SLF G +
Sbjct: 54 NWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGT 113
Query: 143 YIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDA 202
EGG+TA +TRL++V A + ++ +E +P +L+ F+L
Sbjct: 114 SREGGQTAPA---------STRLFQVRA---NSAGATRAVEVLPKAG-ALNSNDAFVLKT 160
Query: 203 GLKLFIWNGPKA 214
++W G A
Sbjct: 161 PSAAYLWVGTGA 172
>pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation
Identifies Sites Of Regulatory Calcium Ions
Length = 329
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 19/187 (10%)
Query: 90 NAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYI-EGGR 148
N + ++T D+ A SAI L L R QG E +SLF I +GG
Sbjct: 52 NWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGT 111
Query: 149 TASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSES--LDPRFVFLLDAGLKL 206
+ G T ++ RL++V A +SS V V+ +S L+ F+L
Sbjct: 112 SRDGGQTAPASI---RLFQVRA------SSSGATRAVEVMPKSGALNSNDAFVLKTPSAA 162
Query: 207 FIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKT 266
++W G A LK+ ++ V + + W K ++++
Sbjct: 163 YLWVGAGASEAEKTAAQELLKVL-------RSQHVQVEEGSEPDGFWEALGGKTSYRTSP 215
Query: 267 RLLAEKI 273
RL +K+
Sbjct: 216 RLKDKKM 222
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNI 81
+ L +V N L+ L G +L L LNL +N++++ +P +F L +LT LDLS+N +
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLSYNQL 169
Query: 82 KQIPDAL 88
+ +P+ +
Sbjct: 170 QSLPEGV 176
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDAL 88
++ L+L NKIK IP + LE L L+++ N +K +PD +
Sbjct: 423 IKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGI 463
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 26 LSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
L+I N + +L+ ++ L LR L + +N+I+ I V F+ ++L LDLSHN + +I
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELEYLDLSHNKLVKI 84
>pdb|1TD0|A Chain A, Viral Capsid Protein Shp At Ph 5.5
pdb|1TD0|B Chain B, Viral Capsid Protein Shp At Ph 5.5
pdb|1TD0|C Chain C, Viral Capsid Protein Shp At Ph 5.5
pdb|1TD0|D Chain D, Viral Capsid Protein Shp At Ph 5.5
Length = 114
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 164 RLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLL 222
R++ + P H A SS P P L+ + L +A KL +W+G KA + L+
Sbjct: 13 RIFAGNDPAHTATGSSGISSPTPALTP------LMLDEATGKLVVWDGQKAGSAVGILV 65
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 3 GFEPGTFCMASKSESVTIGLT--EHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNS 59
F PG+F GLT E+L V L L + +L L+ LN+ +N I +
Sbjct: 94 SFSPGSFS----------GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143
Query: 60 GIPVDLFHLEDLTTLDLSHNNIKQI 84
+P +L +L +DLS+N I+ I
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTI 168
>pdb|1TD3|A Chain A, Crystal Structure Of Vshp_bpp21 In Space Group C2
pdb|1TD3|B Chain B, Crystal Structure Of Vshp_bpp21 In Space Group C2
pdb|1TD3|C Chain C, Crystal Structure Of Vshp_bpp21 In Space Group C2
Length = 115
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 164 RLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLL 222
R++ + P H A SS P P L+ + L +A KL +W+G KA + L+
Sbjct: 14 RIFAGNDPAHTATGSSGISSPTPALTP------LMLDEATGKLVVWDGQKAGSAVGILV 66
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 3 GFEPGTFCMASKSESVTIGLT--EHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNS 59
F PG+F GLT E+L V L L + +L L+ LN+ +N I +
Sbjct: 89 SFSPGSFS----------GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 138
Query: 60 GIPVDLFHLEDLTTLDLSHNNIKQI 84
+P +L +L +DLS+N I+ I
Sbjct: 139 KLPAYFSNLTNLVHVDLSYNYIQTI 163
>pdb|1TD4|A Chain A, Crystal Structure Of Vshp_bpp21 In Space Group H3 With
High Resolution
Length = 115
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 164 RLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLL 222
R++ + P H A SS P P L+ + L +A KL +W+G KA + L+
Sbjct: 14 RIFAGNDPAHTATGSSGISSPTPALTP------LMLDEATGKLVVWDGQKAGSAVGILV 66
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHL-EDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACS 104
L +LNL YN+I + IP + E + L +HN +K IP+ + + + + +
Sbjct: 355 LASLNLAYNQI--TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYN 412
Query: 105 AIHAVNLRNF 114
I +V+ +NF
Sbjct: 413 EIGSVDGKNF 422
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 65 LFHLEDL---TTLDLSHNNIKQIPDAL 88
L HLE L T LDLSHN ++ +P AL
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPAL 482
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 65 LFHLEDL---TTLDLSHNNIKQIPDAL 88
L HLE L T LDLSHN ++ +P AL
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPAL 482
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 24 EHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L V NL L + L+ L+ LN+ +N I++ +P +L +L LDLS N I+
Sbjct: 105 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 83 QI 84
I
Sbjct: 165 SI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 24 EHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L V NL L + L+ L+ LN+ +N I++ +P +L +L LDLS N I+
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 83 QI 84
I
Sbjct: 164 SI 165
>pdb|4F23|A Chain A, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|B Chain B, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|C Chain C, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
Length = 515
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 5 EPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTEL-----QCLRTLNLRYNKIKNS 59
E GT A K+ S + E + +NN +EK+ G + Q + +N+ +++ ++
Sbjct: 363 EQGTGIAADKT-STQKAINEITTKINNIIEKMNGNYDSIRGEFNQVEKRINMIADRVDDA 421
Query: 60 GIPVDLFH------LEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRAC-SAIHAVN 110
+ ++ +E+ TLDL N++ + + ++ A + A + C S +H N
Sbjct: 422 VTDIWSYNAKLLVLIENDRTLDLHDANVRNLHEQIKRALKDNAIDEGDGCFSILHKCN 479
>pdb|4FIU|A Chain A, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|B Chain B, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|C Chain C, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
Length = 515
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 5 EPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTEL-----QCLRTLNLRYNKIKNS 59
E GT A K+ S + E + +NN +EK+ G + Q + +N+ +++ ++
Sbjct: 363 EQGTGIAADKT-STQKAINEITTKINNIIEKMNGNYDSIRGEFNQVEKRINMIADRVDDA 421
Query: 60 GIPVDLFH------LEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRAC-SAIHAVN 110
+ ++ +E+ TLDL N++ + + ++ A + A + C S +H N
Sbjct: 422 VTDIWSYNAKLLVLIENDRTLDLHDANVRNLHEQIKRALKDNAIDEGDGCFSILHKCN 479
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 24 EHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L V NL L + L+ L+ LN+ +N I++ +P +L +L LDLS N I+
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 83 QI 84
I
Sbjct: 164 SI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 24 EHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L V NL L + L+ L+ LN+ +N I++ +P +L +L LDLS N I+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 83 QI 84
I
Sbjct: 163 SI 164
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 14/77 (18%)
Query: 25 HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
+LS+ N L+ L F +LT L+ LR N N++K +P F L +L TL L +N
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYN---NQLKR--VPEGAFDKLTELKTLKLDNN 191
Query: 80 NIKQIP----DALENAK 92
+K++P D+LE K
Sbjct: 192 QLKRVPEGAFDSLEKLK 208
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
L+ L+ LN+ +N I++ +P +L +L LDLS N I+ I
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
L+ L+ LN+ +N I++ +P +L +L LDLS N I+ I
Sbjct: 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
L+ L+ LN+ +N I++ +P +L +L LDLS N I+ I
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 8 TFCMASKSESVTIGLTEHL--SIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDL 65
T A+ S TI L+ +L SI N+L+ G L T++LR+NK+ +
Sbjct: 690 TELFATGSPISTIILSNNLXTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749
Query: 66 FHLEDLTTLDLSHNNIKQIPDALENAKRTKA 96
L L+ D+S+N P N+ + KA
Sbjct: 750 TTLPYLSNXDVSYNCFSSFPTQPLNSSQLKA 780
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 20 IGLTEHLSIVNNNLEKLFG----ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLD 75
IG +L I+N + G E+ +L+ L L+L NK+ IP + L LT +D
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR-IPQAMSALTMLTEID 710
Query: 76 LSHNNIK-QIPD 86
LS+NN+ IP+
Sbjct: 711 LSNNNLSGPIPE 722
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 10 CMASKSESVTIGLTEHLSIV---NNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL 65
C + + SV G+ + I+ +N + KL G L L+ L L N++ +PV +
Sbjct: 26 CRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGV 83
Query: 66 F-HLEDLTTLDLSHNNIKQIPDAL 88
F L LT LDL N + +P A+
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAV 107
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
L+ L+ LN+ +N I++ +P +L +L LDLS N I+ I
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 20 IGLTEHLSIVNNNLEKLFG----ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLD 75
IG +L I+N + G E+ +L+ L L+L NK+ IP + L LT +D
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR-IPQAMSALTMLTEID 707
Query: 76 LSHNNIK-QIPD 86
LS+NN+ IP+
Sbjct: 708 LSNNNLSGPIPE 719
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 46 LRTLNLRYNKIKNSGI-PVDLFHLEDLTTLDLSHNNIKQIPDAL 88
L+ L LR +KN I P L +LT LDLS+NNI I + L
Sbjct: 456 LQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDL 499
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 27.3 bits (59), Expect = 9.0, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 174 QAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVF 220
+A + + +P+ S + ++L+D G +LF+W G A VF
Sbjct: 776 EATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVF 822
>pdb|2V9D|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
Length = 343
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 19/155 (12%)
Query: 19 TIGLTEHLSIVNNN----LEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL 74
TI L++H + + + +++E +R + + +PV L++ LT
Sbjct: 115 TIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVT---LPVXLYNFPALTGQ 171
Query: 75 DLSHNNIKQIPDALENAKRTKATLDKRAC--SAIHAVNLRNFLAAECRTIREEQGDESEE 132
DL+ +K + D+ N K T+D A S IH V A T+ D
Sbjct: 172 DLTPALVKTLADSRSNIIGIKDTIDSVAHLRSXIHTVK----GAHPHFTVLCGYDDH--- 224
Query: 133 FLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYR 167
LFNT + +G +ASG F + +V + +R
Sbjct: 225 ---LFNTLLLGGDGAISASGNFAPQVSVNLLKAWR 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,710,882
Number of Sequences: 62578
Number of extensions: 303763
Number of successful extensions: 889
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 155
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)