Query psy8923
Match_columns 273
No_of_seqs 276 out of 2863
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 22:55:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0443|consensus 100.0 1.1E-37 2.4E-42 280.7 13.4 223 41-272 16-319 (827)
2 KOG0443|consensus 100.0 4.2E-36 9.1E-41 270.6 13.0 182 83-272 440-681 (827)
3 KOG0444|consensus 100.0 2.7E-34 5.9E-39 254.4 7.7 173 95-272 554-800 (1255)
4 KOG0445|consensus 99.6 1.7E-15 3.8E-20 135.1 7.4 166 86-272 581-805 (919)
5 KOG0444|consensus 99.6 1.4E-15 3.1E-20 136.3 5.7 184 79-271 959-1211(1255)
6 smart00262 GEL Gelsolin homolo 99.4 3.7E-12 8.1E-17 89.5 8.4 79 165-250 2-80 (90)
7 KOG0445|consensus 99.3 5.5E-12 1.2E-16 113.1 6.1 105 163-273 224-405 (919)
8 PF13855 LRR_8: Leucine rich r 99.2 7.3E-12 1.6E-16 81.3 2.6 59 21-81 1-61 (61)
9 PLN03150 hypothetical protein; 99.2 4.5E-11 9.8E-16 112.3 7.0 82 1-91 430-513 (623)
10 KOG0617|consensus 99.1 1.3E-11 2.8E-16 94.6 0.2 78 5-92 48-127 (264)
11 PF00626 Gelsolin: Gelsolin re 99.0 6.2E-10 1.3E-14 75.5 3.6 69 179-248 2-70 (76)
12 KOG0617|consensus 98.9 2.7E-10 5.9E-15 87.4 -1.0 88 3-92 69-173 (264)
13 smart00262 GEL Gelsolin homolo 98.8 3.8E-09 8.2E-14 74.1 4.6 38 236-273 23-60 (90)
14 PF12799 LRR_4: Leucine Rich r 98.8 7.8E-09 1.7E-13 61.9 3.6 37 22-58 2-38 (44)
15 PLN00113 leucine-rich repeat r 98.8 9.8E-09 2.1E-13 101.8 6.4 88 2-90 153-258 (968)
16 PLN00113 leucine-rich repeat r 98.7 9.7E-09 2.1E-13 101.8 5.7 79 3-90 489-569 (968)
17 PF12799 LRR_4: Leucine Rich r 98.7 9.3E-09 2E-13 61.6 3.1 41 44-86 1-41 (44)
18 PF00626 Gelsolin: Gelsolin re 98.7 9.6E-09 2.1E-13 69.6 3.4 37 237-273 16-52 (76)
19 KOG4194|consensus 98.7 1.3E-08 2.7E-13 91.6 3.9 63 22-86 126-190 (873)
20 KOG0472|consensus 98.6 2.3E-09 4.9E-14 92.3 -2.2 79 2-91 195-274 (565)
21 PLN03150 hypothetical protein; 98.6 6.6E-08 1.4E-12 91.1 5.7 67 23-90 420-488 (623)
22 PF14580 LRR_9: Leucine-rich r 98.6 3.9E-08 8.5E-13 77.2 2.9 63 21-86 42-105 (175)
23 KOG4237|consensus 98.5 1.7E-08 3.7E-13 86.7 0.7 85 9-94 52-141 (498)
24 KOG0472|consensus 98.5 1.6E-08 3.5E-13 87.1 0.0 77 4-91 220-297 (565)
25 KOG4194|consensus 98.5 7.2E-08 1.6E-12 86.8 3.0 133 4-152 116-267 (873)
26 KOG4579|consensus 98.3 8.5E-08 1.8E-12 71.1 -1.7 70 22-93 54-124 (177)
27 PF13855 LRR_8: Leucine rich r 98.3 4.7E-07 1E-11 58.4 2.0 45 44-90 1-46 (61)
28 KOG1259|consensus 98.3 2.2E-07 4.7E-12 77.6 0.3 64 20-86 283-346 (490)
29 PF14580 LRR_9: Leucine-rich r 98.2 7.6E-07 1.6E-11 70.0 2.8 64 22-89 20-84 (175)
30 KOG4237|consensus 98.2 5.2E-07 1.1E-11 77.8 0.8 86 20-107 273-360 (498)
31 KOG0532|consensus 98.1 3E-07 6.4E-12 82.6 -1.7 64 24-90 169-232 (722)
32 KOG0618|consensus 98.1 7E-07 1.5E-11 84.3 -0.0 68 22-91 69-136 (1081)
33 KOG0532|consensus 98.1 2.5E-07 5.3E-12 83.1 -3.2 85 4-90 112-210 (722)
34 KOG0618|consensus 98.0 8.1E-07 1.8E-11 83.9 -0.7 62 22-85 384-446 (1081)
35 KOG4579|consensus 98.0 6.1E-07 1.3E-11 66.6 -2.0 66 22-89 78-143 (177)
36 PRK15370 E3 ubiquitin-protein 98.0 1.1E-05 2.4E-10 77.2 5.7 59 23-87 243-301 (754)
37 PRK15387 E3 ubiquitin-protein 97.9 4.9E-06 1.1E-10 79.5 2.7 62 22-88 403-465 (788)
38 PRK15370 E3 ubiquitin-protein 97.9 1.4E-05 3E-10 76.5 5.5 59 23-87 327-385 (754)
39 PRK15387 E3 ubiquitin-protein 97.9 9.6E-06 2.1E-10 77.6 3.9 39 44-87 382-420 (788)
40 COG4886 Leucine-rich repeat (L 97.9 5.7E-06 1.2E-10 73.9 1.9 63 23-87 118-181 (394)
41 COG4886 Leucine-rich repeat (L 97.6 2.5E-05 5.4E-10 69.8 2.1 65 22-88 141-205 (394)
42 KOG1259|consensus 97.6 2.4E-05 5.3E-10 65.6 0.9 62 21-85 307-368 (490)
43 PLN03210 Resistant to P. syrin 97.5 0.00018 3.8E-09 72.9 7.0 83 3-90 792-891 (1153)
44 KOG1859|consensus 97.4 1.5E-05 3.3E-10 74.0 -2.0 35 23-58 189-223 (1096)
45 KOG0531|consensus 97.4 5.9E-05 1.3E-09 68.0 1.7 63 21-86 95-157 (414)
46 KOG1859|consensus 97.4 1.2E-05 2.5E-10 74.7 -3.1 65 19-86 162-226 (1096)
47 PF00560 LRR_1: Leucine Rich R 97.4 5.6E-05 1.2E-09 37.9 0.5 20 23-42 2-21 (22)
48 KOG4658|consensus 97.3 0.00011 2.4E-09 71.7 2.1 56 23-80 573-629 (889)
49 KOG1644|consensus 97.2 0.00034 7.3E-09 55.6 3.1 63 21-86 42-105 (233)
50 PLN03210 Resistant to P. syrin 97.1 0.00098 2.1E-08 67.6 6.5 68 21-91 611-680 (1153)
51 KOG0531|consensus 97.0 0.00022 4.7E-09 64.3 1.0 63 20-86 117-179 (414)
52 PF13504 LRR_7: Leucine rich r 97.0 0.00045 9.8E-09 32.2 1.4 16 70-85 2-17 (17)
53 KOG4658|consensus 97.0 0.00045 9.7E-09 67.5 2.8 70 22-92 546-618 (889)
54 cd00116 LRR_RI Leucine-rich re 97.0 0.00068 1.5E-08 58.4 3.6 63 21-83 137-207 (319)
55 cd00116 LRR_RI Leucine-rich re 96.9 0.00065 1.4E-08 58.5 3.0 61 22-82 109-178 (319)
56 PF00560 LRR_1: Leucine Rich R 96.9 0.00034 7.3E-09 35.0 0.6 17 71-87 2-18 (22)
57 KOG2739|consensus 96.8 0.00068 1.5E-08 55.8 2.3 42 40-82 61-104 (260)
58 smart00370 LRR Leucine-rich re 96.8 0.0011 2.3E-08 34.6 2.0 22 68-89 1-22 (26)
59 smart00369 LRR_TYP Leucine-ric 96.8 0.0011 2.3E-08 34.6 2.0 22 68-89 1-22 (26)
60 KOG1644|consensus 96.6 0.002 4.4E-08 51.2 3.4 63 21-85 64-129 (233)
61 PF13504 LRR_7: Leucine rich r 96.2 0.003 6.5E-08 29.3 1.2 15 23-37 3-17 (17)
62 smart00370 LRR Leucine-rich re 96.1 0.0041 8.9E-08 32.3 1.7 22 43-66 1-22 (26)
63 smart00369 LRR_TYP Leucine-ric 96.1 0.0041 8.9E-08 32.3 1.7 22 43-66 1-22 (26)
64 KOG2739|consensus 96.0 0.0046 9.9E-08 51.0 2.5 61 21-84 65-131 (260)
65 PRK15386 type III secretion pr 96.0 0.0072 1.6E-07 53.8 3.8 63 21-90 52-116 (426)
66 KOG3207|consensus 96.0 0.0042 9.1E-08 54.9 2.1 65 22-86 247-318 (505)
67 KOG3207|consensus 95.3 0.0041 9E-08 54.9 -0.2 66 19-85 195-262 (505)
68 KOG2982|consensus 95.2 0.019 4E-07 48.7 3.1 60 22-82 72-134 (418)
69 smart00364 LRR_BAC Leucine-ric 95.0 0.013 2.9E-07 30.3 1.2 18 69-86 2-19 (26)
70 KOG2982|consensus 95.0 0.031 6.7E-07 47.4 4.0 63 20-82 96-159 (418)
71 PRK15386 type III secretion pr 95.0 0.028 6E-07 50.1 3.8 59 22-90 73-136 (426)
72 KOG3665|consensus 94.8 0.018 3.9E-07 55.1 2.4 67 19-86 171-237 (699)
73 KOG1984|consensus 94.8 0.058 1.3E-06 51.5 5.5 59 163-221 859-917 (1007)
74 PF13306 LRR_5: Leucine rich r 94.4 0.062 1.3E-06 39.5 4.0 70 8-90 7-78 (129)
75 KOG0473|consensus 94.1 0.0022 4.8E-08 52.2 -4.5 59 22-82 66-124 (326)
76 KOG0473|consensus 93.6 0.0013 2.9E-08 53.4 -6.5 68 21-90 42-109 (326)
77 smart00365 LRR_SD22 Leucine-ri 93.0 0.073 1.6E-06 27.6 1.6 18 68-85 1-18 (26)
78 KOG2123|consensus 92.8 0.011 2.4E-07 49.5 -2.7 60 20-82 40-101 (388)
79 KOG1909|consensus 92.7 0.059 1.3E-06 46.5 1.5 61 22-82 186-254 (382)
80 smart00364 LRR_BAC Leucine-ric 92.1 0.094 2E-06 27.1 1.3 18 44-63 2-19 (26)
81 COG5028 Vesicle coat complex C 91.5 0.18 3.8E-06 47.8 3.2 26 241-266 748-773 (861)
82 COG5028 Vesicle coat complex C 91.4 0.21 4.6E-06 47.2 3.7 60 163-222 710-773 (861)
83 PTZ00395 Sec24-related protein 89.5 0.33 7.2E-06 49.0 3.3 25 241-265 1446-1470(1560)
84 PF13306 LRR_5: Leucine rich r 89.2 0.5 1.1E-05 34.5 3.6 59 24-87 38-98 (129)
85 KOG1909|consensus 89.2 0.27 5.9E-06 42.6 2.2 63 21-83 157-227 (382)
86 KOG3665|consensus 89.1 0.18 3.8E-06 48.5 1.2 68 22-90 123-193 (699)
87 PF13516 LRR_6: Leucine Rich r 89.1 0.17 3.7E-06 25.4 0.6 15 68-82 1-15 (24)
88 KOG1985|consensus 88.8 0.34 7.4E-06 46.3 2.8 21 241-261 775-795 (887)
89 KOG1984|consensus 88.7 0.55 1.2E-05 45.2 4.0 29 238-266 890-918 (1007)
90 PTZ00395 Sec24-related protein 87.2 0.62 1.3E-05 47.2 3.5 36 184-219 1433-1468(1560)
91 COG5238 RNA1 Ran GTPase-activa 86.8 0.58 1.3E-05 39.4 2.7 14 22-35 31-44 (388)
92 KOG1985|consensus 86.0 0.61 1.3E-05 44.6 2.7 58 163-220 736-798 (887)
93 KOG2123|consensus 85.6 0.071 1.5E-06 44.9 -3.1 60 23-86 21-80 (388)
94 smart00368 LRR_RI Leucine rich 85.6 0.65 1.4E-05 24.4 1.6 14 69-82 2-15 (28)
95 COG5238 RNA1 Ran GTPase-activa 83.7 1.1 2.5E-05 37.7 3.1 47 38-85 86-136 (388)
96 KOG2120|consensus 81.4 0.18 3.9E-06 42.9 -2.4 60 22-82 186-248 (419)
97 KOG2120|consensus 76.9 1.7 3.7E-05 37.2 2.0 58 22-80 287-349 (419)
98 TIGR00864 PCC polycystin catio 74.4 2.1 4.5E-05 46.8 2.3 32 27-58 1-33 (2740)
99 TIGR00864 PCC polycystin catio 71.4 2.6 5.7E-05 46.1 2.2 42 50-93 1-45 (2740)
100 KOG3763|consensus 70.4 2.4 5.2E-05 39.1 1.5 61 19-82 216-283 (585)
101 PLN00162 transport protein sec 62.8 8.8 0.00019 37.6 3.8 43 162-212 620-662 (761)
102 PLN00162 transport protein sec 42.7 21 0.00045 35.1 2.7 18 240-257 646-663 (761)
103 KOG1947|consensus 40.4 14 0.00031 33.3 1.2 61 21-81 243-307 (482)
104 smart00367 LRR_CC Leucine-rich 36.7 26 0.00056 17.6 1.4 13 68-80 1-13 (26)
105 KOG3763|consensus 34.0 22 0.00049 33.1 1.4 36 42-79 216-254 (585)
106 KOG3864|consensus 30.5 16 0.00034 29.6 -0.1 59 22-80 102-162 (221)
107 KOG4308|consensus 29.2 5.3 0.00012 36.8 -3.4 61 22-82 205-275 (478)
108 PF07174 FAP: Fibronectin-atta 25.1 51 0.0011 27.7 1.9 23 251-273 260-282 (297)
109 PF11330 DUF3132: Protein of u 24.7 68 0.0015 21.9 2.1 22 239-260 88-109 (124)
110 COG5353 Uncharacterized protei 22.3 65 0.0014 24.5 1.8 13 246-258 75-87 (161)
111 TIGR00293 prefoldin, archaeal 21.1 85 0.0018 22.9 2.3 25 244-268 64-89 (126)
No 1
>KOG0443|consensus
Probab=100.00 E-value=1.1e-37 Score=280.66 Aligned_cols=223 Identities=27% Similarity=0.439 Sum_probs=187.3
Q ss_pred cCCccCCEeeccCCcCccCCCCcccc-CC-C--CCCEEecccCCCCCccchhhhhhhcccccchhccccccccchhhhhh
Q psy8923 41 TELQCLRTLNLRYNKIKNSGIPVDLF-HL-E--DLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLA 116 (273)
Q Consensus 41 ~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~--~L~~L~Ls~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~ 116 (273)
++=+.|+...+.+=.+.. +|..-. .. + .-..|.-..++-..+...|++|+|.+++.++.+++++.+++|++.||
T Consensus 16 g~~pGl~IWRIe~f~lv~--VP~s~~G~Fy~GdaYIvL~t~~~k~~~l~~DIHyWLGkd~S~dE~g~aAiktveLD~~Lg 93 (827)
T KOG0443|consen 16 GQKPGLEIWRIENFELVP--VPKSSHGKFYTGDAYIVLKTTLKKNGSLSYDIHYWLGKDSSQDEAGAAAIKTVELDDYLG 93 (827)
T ss_pred ccCCceEEEEeccCeeee--cchhccCceecCceEEEEehhhccCCccceeEEEEecCccchhhhcceeeeeEehhhhhC
Confidence 344667777776666665 776432 11 1 22233333445557778899999999999999999999999999999
Q ss_pred hhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcceeeEEEEecCcccCCCCceEEEEecCCCCCCCCCC
Q psy8923 117 AECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRF 196 (273)
Q Consensus 117 ~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~d 196 (273)
|.++|+|++||+|+..|++||+.++++.+|| ..+|++|++...+..|||||.|+ ++++++|||++|+|||.+|
T Consensus 94 g~~vQhREVQg~ES~~FLsYFK~gi~~~~GG-v~Sg~khv~~~~~~~rL~~~KGk------r~vr~~eV~~~~sS~N~gD 166 (827)
T KOG0443|consen 94 GRAVQHREVQGHESEKFLSYFKPGIIYQEGG-VASGFKHVETEEYQVRLFHCKGK------RNVRVKEVPFSWSSLNHGD 166 (827)
T ss_pred CCcceeehhcccchHHHHhhccCCceecccc-cccCcccccccceeeEEEEEccc------eeEEEEEEEeehhhcCCCc
Confidence 9999999999999999999999999999999 99999999999988899999999 8999999999999999999
Q ss_pred EEEEECCCeEEEEeCCCCCHHHHHHhhhhh---------------------------cccccc---C--C----------
Q psy8923 197 VFLLDAGLKLFIWNGPKAKNTFVFLLDAGL---------------------------KLFIWN---G--P---------- 234 (273)
Q Consensus 197 vfild~~~~~~vW~G~~s~~~e~~~~~~~~---------------------------~~~fw~---~--~---------- 234 (273)
|||||+++++|+|+|..|+..||.-|...+ ..+||. | +
T Consensus 167 vFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~vvdd~~~~~d~d~~~~~~~~~g~~~~~~~~~~~~~ 246 (827)
T KOG0443|consen 167 VFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAVVDDGKEAADSDLGEFWGFVLGFAPALPKKSPDDD 246 (827)
T ss_pred EEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEEecCcccccCchHHHHHHhhcCcCccCCCCCcchh
Confidence 999999999999999999999998876543 334554 1 0
Q ss_pred ----------------------------------CCCCceEEEEeCC-ceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923 235 ----------------------------------KAKNTFVFLLDAG-LKLFIWNGPKAKNTFKSKTRLLAEK 272 (273)
Q Consensus 235 ----------------------------------~~~~~~v~~ld~~-~~~~~w~G~~a~~~~~~~~~~~~~~ 272 (273)
-..++++||||+| .+||||+|+.|+.+||+.|+..|+.
T Consensus 247 ~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~ERkaAm~~Aee 319 (827)
T KOG0443|consen 247 DEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKGRQASLDERKAAMSSAEE 319 (827)
T ss_pred hhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 0123459999999 9999999999999999999998875
No 2
>KOG0443|consensus
Probab=100.00 E-value=4.2e-36 Score=270.55 Aligned_cols=182 Identities=22% Similarity=0.345 Sum_probs=160.7
Q ss_pred CccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecc-cCcc
Q psy8923 83 QIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVE-DTVY 161 (273)
Q Consensus 83 ~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~-~~~~ 161 (273)
.....||.|.|.+++.++...+...+..+...+++.++|.|+.+|+||++|+.+|++++++++|+ ++. ... ....
T Consensus 440 ~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s~kg~~vq~rv~~GkEP~hF~~iFqgkliifkgg-~s~---~g~~~~~~ 515 (827)
T KOG0443|consen 440 RTEHIIYVWQGKQASQEERAAAISLAKALVESLKGVPVQVRIYEGKEPPHFLAIFQGKLIIFKGG-TSE---EGNTYPAP 515 (827)
T ss_pred ccceEEEEEecccCCHHHHHHHHHHHHHHhhhcCCceeEEEeecCCCChHHHHhhCCceEEEecC-cCC---CCCccCCC
Confidence 44456999999999999999888899999999999999999999999999999999999999998 442 111 1233
Q ss_pred eeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhh----------------
Q psy8923 162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAG---------------- 225 (273)
Q Consensus 162 ~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~---------------- 225 (273)
.++||+|+|+ ++.++++.|||+.++||||+|||||.++..+|+|+|++|+.+||+||...
T Consensus 516 ~t~LFqV~Gt----~~~n~kAveV~~~A~SLNSsd~fvL~t~s~~ylW~G~gss~~e~e~A~~v~~~l~~~~~~~v~EG~ 591 (827)
T KOG0443|consen 516 STRLFQVQGT----GPSNTKAVEVPAVASSLNSSDCFVLKTGSSVYLWCGKGSSGDEREMAKRVLDLLKRCQSTAVKEGS 591 (827)
T ss_pred ceEEEEEecc----CcccceeEeeccccccccccceEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCChhhhhcCC
Confidence 4699999999 78999999999999999999999999999999999999999999998764
Q ss_pred hcccccc--C-----------------------------------------CCCCCceEEEEeCCceEEEEeCCCcchHh
Q psy8923 226 LKLFIWN--G-----------------------------------------PKAKNTFVFLLDAGLKLFIWNGPKAKNTF 262 (273)
Q Consensus 226 ~~~~fw~--~-----------------------------------------~~~~~~~v~~ld~~~~~~~w~G~~a~~~~ 262 (273)
+++.||+ | ++..++||||||||+|||||||+.|+++|
T Consensus 592 Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~e 671 (827)
T KOG0443|consen 592 EPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNKTGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKE 671 (827)
T ss_pred CchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEecCCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhH
Confidence 3899999 2 23345679999999999999999999999
Q ss_pred HHhHHHHhhh
Q psy8923 263 KSKTRLLAEK 272 (273)
Q Consensus 263 ~~~~~~~~~~ 272 (273)
|..|+++|++
T Consensus 672 K~~Al~~~~~ 681 (827)
T KOG0443|consen 672 KEEALTIGQK 681 (827)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 3
>KOG0444|consensus
Probab=100.00 E-value=2.7e-34 Score=254.38 Aligned_cols=173 Identities=50% Similarity=0.824 Sum_probs=150.5
Q ss_pred ccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcceeeEEEEecCccc
Q psy8923 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQ 174 (273)
Q Consensus 95 ~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~~~L~~v~g~~~~ 174 (273)
+++++.+.|+++++++|++.+|..+..+|+.+|.|+.+|+++|+..++|++||++.+||..++..++.+|||+|.+.
T Consensus 554 eAtLDK~aCsAiHAVnLRN~LgA~CRTvREEmgDEsEeFL~lF~~ei~YIEGGrTasGFYT~E~~~h~TRlYrv~~~--- 630 (1255)
T KOG0444|consen 554 EATLDKGACSAIHAVNLRNHLGATCRTVREEMGDESEEFLTLFGEEIVYIEGGRTASGFYTTEKPAHLTRLYRVGVN--- 630 (1255)
T ss_pred cccccchhhhHHHhhhhhhhhCchhhhhHHhhCccHHHHHHHhcceeEEEecCceecceeeecchHHhhhhheeccc---
Confidence 56777788999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHH----HHHHhhhh------------------hcccccc
Q psy8923 175 AQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNT----FVFLLDAG------------------LKLFIWN 232 (273)
Q Consensus 175 ~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~----e~~~~~~~------------------~~~~fw~ 232 (273)
...+.++.||++..||+++.||+||.|..+|+|.|-.|... .|-+|..+ ++.+||+
T Consensus 631 --g~~i~lEPVpl~~tSLDPRf~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI~l~rQg~e~pEFWq 708 (1255)
T KOG0444|consen 631 --GTAIELEPVPLSVTSLDPRFCFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEIELCRQGREPPEFWQ 708 (1255)
T ss_pred --cceeEeeccCccccccCcceEEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCceeeehhhhcCCCHHHHH
Confidence 67899999999999999999999999999999999998554 34444432 3889998
Q ss_pred C--CCC--------------------------------------------------CCceEEEEeCCceEEEEeCCCcch
Q psy8923 233 G--PKA--------------------------------------------------KNTFVFLLDAGLKLFIWNGPKAKN 260 (273)
Q Consensus 233 ~--~~~--------------------------------------------------~~~~v~~ld~~~~~~~w~G~~a~~ 260 (273)
+ ..+ .+.-|||||+++.||+|+|+++++
T Consensus 709 aLgg~p~e~~~~ikeHVPEdf~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~R 788 (1255)
T KOG0444|consen 709 ALGGNPDEPQGAIKEHVPEDFVPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNR 788 (1255)
T ss_pred HhCCCCcccccchhhcCCcccCCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchH
Confidence 2 000 012299999999999999999999
Q ss_pred HhHHhHHHHhhh
Q psy8923 261 TFKSKTRLLAEK 272 (273)
Q Consensus 261 ~~~~~~~~~~~~ 272 (273)
--|..|..+..+
T Consensus 789 LvraAa~KL~~E 800 (1255)
T KOG0444|consen 789 LVRAAAQKLVVE 800 (1255)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 4
>KOG0445|consensus
Probab=99.60 E-value=1.7e-15 Score=135.11 Aligned_cols=166 Identities=24% Similarity=0.304 Sum_probs=131.9
Q ss_pred chhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcceeeE
Q psy8923 86 DALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRL 165 (273)
Q Consensus 86 ~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~~~L 165 (273)
...+.|+|.+++..+++.+++.+.+|+..-| .|+|+.||+||+.|+.+|.+++.++.|- . .....|+
T Consensus 581 cvyf~WqG~hst~~ekG~~AL~tvElD~e~g---aqvrv~qG~Ep~~Fl~lF~g~m~vhsgr-~---------E~~~erl 647 (919)
T KOG0445|consen 581 CVYFFWQGRHSTVSEKGTSALMTVELDEERG---AQVRVLQGKEPPCFLQLFQGGMVVHSGR-R---------EEEEERL 647 (919)
T ss_pred EEEEEEccccCCcccccceeeeeeeeccccC---ceeEeecCCCccHHHHHhcCCeeEEcCc-h---------hhchhhe
Confidence 3467899999999999999999999987643 5899999999999999999999988876 2 1223479
Q ss_pred EEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCe--EEEEeCCCCCHHHHHHhhhhh-----------------
Q psy8923 166 YRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLK--LFIWNGPKAKNTFVFLLDAGL----------------- 226 (273)
Q Consensus 166 ~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~--~~vW~G~~s~~~e~~~~~~~~----------------- 226 (273)
|.|.|. -+....+.||.+..++|.|+..||+-..+. +|+|.|..+-...+..+...+
T Consensus 648 Y~v~G~----vs~Et~l~Ev~c~~S~LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~~~~~ 723 (919)
T KOG0445|consen 648 YCVRGE----VSVETNLLEVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSKVTIH 723 (919)
T ss_pred eeEecc----cccchhhhHhhhccccccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccccceeE
Confidence 999998 366778889999999999999999987654 999999999887666543322
Q ss_pred -------cccccc--CCC-C-----------------------CCc-------eEEEEeCCceEEEEeCCCcchHhHHhH
Q psy8923 227 -------KLFIWN--GPK-A-----------------------KNT-------FVFLLDAGLKLFIWNGPKAKNTFKSKT 266 (273)
Q Consensus 227 -------~~~fw~--~~~-~-----------------------~~~-------~v~~ld~~~~~~~w~G~~a~~~~~~~~ 266 (273)
+..||+ |.. . ... ..|++|.|+|+|+|. =+-+|+.|
T Consensus 724 Eveegs~~~~~~~alGrkdf~~~~RlF~~sS~qa~els~p~rc~~pFsQ~~Ly~afLvD~gdelwLW~----w~s~r~~A 799 (919)
T KOG0445|consen 724 EVEEGSEPLGFWDALGRKDFNFAPRLFILSSSQATELSYPARCPMPFSQEDLYSAFLVDNGDELWLWQ----WASDRKSA 799 (919)
T ss_pred eecCCCCchhhhhhcccccccccceeeeccchhhhhccCcccCCCcccHHHHhhheeeccCCeeEeeh----hhhHHHHH
Confidence 666676 210 0 000 179999999999998 56678888
Q ss_pred HHHhhh
Q psy8923 267 RLLAEK 272 (273)
Q Consensus 267 ~~~~~~ 272 (273)
++.|.+
T Consensus 800 leta~~ 805 (919)
T KOG0445|consen 800 LETALQ 805 (919)
T ss_pred HHHHHH
Confidence 888875
No 5
>KOG0444|consensus
Probab=99.58 E-value=1.4e-15 Score=136.26 Aligned_cols=184 Identities=15% Similarity=0.184 Sum_probs=136.2
Q ss_pred CCCC-Cccchhhhhhhcccccchhccccc--cccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCccccccee
Q psy8923 79 NNIK-QIPDALENAKRTKATLDKRACSAI--HAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFT 155 (273)
Q Consensus 79 N~l~-~ip~~l~~w~g~~~~~~~~~~~~l--~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~ 155 (273)
|+-. .+....|.|+|++++--- -..+- .-......++++...+|..|..|...|++.|+.+++++.|.+.. +
T Consensus 959 ~qPE~dfqCvVYFWQGR~AsNMG-WLtFTF~LQkkFe~~F~~kLEVVRm~QQQEN~KFlSHFKRKFiIhrGkRk~----~ 1033 (1255)
T KOG0444|consen 959 DQPEMDFQCVVYFWQGRDASNMG-WLTFTFQLQKKFEEIFKDKLEVVRMYQQQENHKFLSHFKRKFIIHRGKRKL----T 1033 (1255)
T ss_pred cCCccceeEEEEEecCCccCccc-eEEEEEEehhhHHHhcccceeeeeHhhhhhhhHHHHHhhhhheeeccccch----h
Confidence 4545 777889999998765221 11111 12223445788888999999999999999999999999987221 1
Q ss_pred cccCcceeeEEEEecCcccCC-CCceEEEEecCCCCCCCCCCEEEEEC-------CCeEEEEeCCCCCHHHHHHhhhhh-
Q psy8923 156 VEDTVYTTRLYRVHAPLHQAQ-ASSIHLEPVPVLSESLDPRFVFLLDA-------GLKLFIWNGPKAKNTFVFLLDAGL- 226 (273)
Q Consensus 156 ~~~~~~~~~L~~v~g~~~~~~-~~~~~~~ev~~~~ssL~s~dvfild~-------~~~~~vW~G~~s~~~e~~~~~~~~- 226 (273)
.......+.+|+++.. | .-.++..|+.++++.|||..||||.. +..+|+|.|+.|+++|.+++.+..
T Consensus 1034 ~~~G~~~pelfq~R~N----GsalctR~IQin~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp~e~~~a~d~~~ 1109 (1255)
T KOG0444|consen 1034 KNLGGKWPELFQMRAN----GSALCTRTIQINCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDPREHEFASDLVV 1109 (1255)
T ss_pred hhhcCCCchheeeecC----CccceeeeEEecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCChHHHHHHHHhcC
Confidence 1122335689999876 3 45678899999999999999999953 345899999999999999987532
Q ss_pred -----------------ccccccC----------------------------------------CCCCCceEEEEeCCce
Q psy8923 227 -----------------KLFIWNG----------------------------------------PKAKNTFVFLLDAGLK 249 (273)
Q Consensus 227 -----------------~~~fw~~----------------------------------------~~~~~~~v~~ld~~~~ 249 (273)
+..||.+ ++...+++|++|.|.+
T Consensus 1110 ~~~d~~~~~~~~~egee~e~fw~~~g~~k~ye~d~~~~khtrlfrc~nekgyfa~sek~~DfcqDDl~dddim~ldng~~ 1189 (1255)
T KOG0444|consen 1110 RDDDNDFRIVEVQEGEENEEFWKVLGGKKKYETDSSFVKHTRLFRCTNEKGYFAISEKTVDFCQDDLDDDDIMILDNGDA 1189 (1255)
T ss_pred ccccchhhhhccCCccchHHHhcccCCCCccchhHHHHHHHHHHhccchhhhhhHhHhhhhhhhccchhhhhhhhcccce
Confidence 4446762 1223356999999999
Q ss_pred EEEEeCCCcchHhHHhHHHHhh
Q psy8923 250 LFIWNGPKAKNTFKSKTRLLAE 271 (273)
Q Consensus 250 ~~~w~G~~a~~~~~~~~~~~~~ 271 (273)
||+|+|...+.-|-+.+...|+
T Consensus 1190 v~~w~g~~~s~ie~Kls~~a~Q 1211 (1255)
T KOG0444|consen 1190 VFLWIGARSSDIEAKLSYQAAQ 1211 (1255)
T ss_pred eeeeecceehhHHHHHHHHHHH
Confidence 9999999999988888877554
No 6
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.36 E-value=3.7e-12 Score=89.47 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=64.6
Q ss_pred EEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceEEEE
Q psy8923 165 LYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVFLL 244 (273)
Q Consensus 165 L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v~~l 244 (273)
+.++.|. ..+.+.++|+++++|+++||||||++..+|+|.|++|+..||..|...|...+-. .......|.++
T Consensus 2 ~~~~~g~------~~~~~~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~-~~~~~~~i~~v 74 (90)
T smart00262 2 LVRVKGK------RNVRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDT-LGPGPVQVRVV 74 (90)
T ss_pred eEEEeCC------ceEEEEEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHh-cCCCCceEEEE
Confidence 3455555 6888999999999999999999999999999999999999999999887666532 22445678888
Q ss_pred eCCceE
Q psy8923 245 DAGLKL 250 (273)
Q Consensus 245 d~~~~~ 250 (273)
+.|.|-
T Consensus 75 ~eg~E~ 80 (90)
T smart00262 75 DEGKEP 80 (90)
T ss_pred eCCCCC
Confidence 888764
No 7
>KOG0445|consensus
Probab=99.27 E-value=5.5e-12 Score=113.08 Aligned_cols=105 Identities=22% Similarity=0.282 Sum_probs=88.1
Q ss_pred eeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhh----------------
Q psy8923 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL---------------- 226 (273)
Q Consensus 163 ~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~---------------- 226 (273)
.-|++|+|+ .++...-|.+..+|||++||||+..+..+|.|.|..|+.-|+.-|...+
T Consensus 224 vMLlqVkGr------~hVqtRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCtAt~i 297 (919)
T KOG0445|consen 224 VMLLQVKGR------RHVQTRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCTATYI 297 (919)
T ss_pred eEEEEEccc------ccceeEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCceeEEE
Confidence 368999998 7888888999999999999999999999999999999999988766432
Q ss_pred ------------cccccc--C---CC-----CC---------------------------------------CceEEEEe
Q psy8923 227 ------------KLFIWN--G---PK-----AK---------------------------------------NTFVFLLD 245 (273)
Q Consensus 227 ------------~~~fw~--~---~~-----~~---------------------------------------~~~v~~ld 245 (273)
...||. | +| +. ...|.|+|
T Consensus 298 vtit~~~~~t~~~~~Fw~llg~qs~~~~~g~a~ede~fE~~iietN~iyr~~dd~l~p~~~~w~ipk~~~l~p~eVLvFD 377 (919)
T KOG0445|consen 298 VTITEINTHTHAAKDFWKLLGGQSSYQSAGDAKEDELFEAAIIETNCIYRLMDDKLVPDDDYWKIPKCSLLQPKEVLVFD 377 (919)
T ss_pred EEEeccchhHHHHHHHHHHhCCccchhhcCCccccchHHHHHHHhhhHHhhcccccCccccccccccccccCcceEEEEe
Confidence 556776 2 00 00 01299999
Q ss_pred CCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923 246 AGLKLFIWNGPKAKNTFKSKTRLLAEKI 273 (273)
Q Consensus 246 ~~~~~~~w~G~~a~~~~~~~~~~~~~~~ 273 (273)
-|+|||||-|+.++...|+-|.++|+.+
T Consensus 378 FGSEvYVW~Gk~~~~~~~~~A~~lAk~l 405 (919)
T KOG0445|consen 378 FGSEVYVWHGKEVTLAQRKIAFQLAKHL 405 (919)
T ss_pred cCceEEEEcCccCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999864
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.21 E-value=7.3e-12 Score=81.26 Aligned_cols=59 Identities=36% Similarity=0.514 Sum_probs=53.3
Q ss_pred CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCc-cccCCCCCCEEecccCCC
Q psy8923 21 GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPV-DLFHLEDLTTLDLSHNNI 81 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~~l~~L~~L~Ls~N~l 81 (273)
++|++|++++|+|+.|| ..|..+++|++|++++|+++. +|+ .+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~--i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS--IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE--EETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc--cCHHHHcCCCCCCEEeCcCCcC
Confidence 35788999999999998 789999999999999999998 665 556999999999999986
No 9
>PLN03150 hypothetical protein; Provisional
Probab=99.17 E-value=4.5e-11 Score=112.29 Aligned_cols=82 Identities=26% Similarity=0.470 Sum_probs=72.9
Q ss_pred CCCCCCccccCCCCCceecCCCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccC
Q psy8923 1 MVGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79 (273)
Q Consensus 1 ~~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N 79 (273)
+.|.+|..|+.+++| +.|+|++|.|++ +|..++.|++|+.|+|++|++++ .+|+.+.+|++|+.|+|++|
T Consensus 430 L~g~ip~~i~~L~~L--------~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 430 LRGFIPNDISKLRHL--------QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred ccccCCHHHhCCCCC--------CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCEEECcCC
Confidence 357788888887777 669999999996 89999999999999999999995 89999999999999999999
Q ss_pred CCC-Cccchhhhh
Q psy8923 80 NIK-QIPDALENA 91 (273)
Q Consensus 80 ~l~-~ip~~l~~w 91 (273)
+|+ .+|..+...
T Consensus 501 ~l~g~iP~~l~~~ 513 (623)
T PLN03150 501 SLSGRVPAALGGR 513 (623)
T ss_pred cccccCChHHhhc
Confidence 999 999887653
No 10
>KOG0617|consensus
Probab=99.11 E-value=1.3e-11 Score=94.60 Aligned_cols=78 Identities=27% Similarity=0.405 Sum_probs=63.1
Q ss_pred CCccccCCCCCceecCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC--
Q psy8923 5 EPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-- 82 (273)
Q Consensus 5 ~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-- 82 (273)
+|+.|.++.+| +.|++++|+|+.+|.++..|++|+.|++.-|++.. +|..|+.++.|+.|||++|+|.
T Consensus 48 vppnia~l~nl--------evln~~nnqie~lp~~issl~klr~lnvgmnrl~~--lprgfgs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 48 VPPNIAELKNL--------EVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI--LPRGFGSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred cCCcHHHhhhh--------hhhhcccchhhhcChhhhhchhhhheecchhhhhc--CccccCCCchhhhhhccccccccc
Confidence 34445555444 56888999999999888899999999999999987 8999999999999999999888
Q ss_pred Cccchhhhhh
Q psy8923 83 QIPDALENAK 92 (273)
Q Consensus 83 ~ip~~l~~w~ 92 (273)
.+|..+|.+.
T Consensus 118 ~lpgnff~m~ 127 (264)
T KOG0617|consen 118 SLPGNFFYMT 127 (264)
T ss_pred cCCcchhHHH
Confidence 7888777643
No 11
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=98.95 E-value=6.2e-10 Score=75.47 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=51.9
Q ss_pred ceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceEEEEeCCc
Q psy8923 179 SIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL 248 (273)
Q Consensus 179 ~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v~~ld~~~ 248 (273)
++...++++++++|+++||||+|++..+|+|.|+.|+..|+.++...|.... ...+.....+..++.|.
T Consensus 2 ~~~~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~-~~~~~~~~~~~~~~eg~ 70 (76)
T PF00626_consen 2 FVRPEQVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELL-SEERPPLPEVIRVEEGK 70 (76)
T ss_dssp TEEEEEESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHH-HHHTTTTSEEEEEETTH
T ss_pred CccCCcCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhh-hhcCCCCCEEEEecCCC
Confidence 4577889999999999999999999999999999999999999877664333 21222223444445544
No 12
>KOG0617|consensus
Probab=98.85 E-value=2.7e-10 Score=87.37 Aligned_cols=88 Identities=25% Similarity=0.358 Sum_probs=67.7
Q ss_pred CCCCccccCCCCCceecC---------------CCccEEEccCCCCCC--chhhhcCCccCCEeeccCCcCccCCCCccc
Q psy8923 3 GFEPGTFCMASKSESVTI---------------GLTEHLSIVNNNLEK--LFGELTELQCLRTLNLRYNKIKNSGIPVDL 65 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l---------------~~l~~L~l~~N~l~~--lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~ 65 (273)
..+|.+|+++++|+.+.+ +.|++|||+.|++.. +|..|..|+.|+.|+|+.|.+.- +|..+
T Consensus 69 e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~--lp~dv 146 (264)
T KOG0617|consen 69 EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI--LPPDV 146 (264)
T ss_pred hhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc--CChhh
Confidence 467888888888877542 366778888887775 77777778888888888888876 88888
Q ss_pred cCCCCCCEEecccCCCCCccchhhhhh
Q psy8923 66 FHLEDLTTLDLSHNNIKQIPDALENAK 92 (273)
Q Consensus 66 ~~l~~L~~L~Ls~N~l~~ip~~l~~w~ 92 (273)
+++++|+.|.+..|.|-++|.+++.+.
T Consensus 147 g~lt~lqil~lrdndll~lpkeig~lt 173 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLLSLPKEIGDLT 173 (264)
T ss_pred hhhcceeEEeeccCchhhCcHHHHHHH
Confidence 888888888888888888888777653
No 13
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=98.85 E-value=3.8e-09 Score=74.09 Aligned_cols=38 Identities=26% Similarity=0.529 Sum_probs=34.7
Q ss_pred CCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923 236 AKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273 (273)
Q Consensus 236 ~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~ 273 (273)
..+++|||||++.+||||+|++|++.||..|..+|+++
T Consensus 23 L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~ 60 (90)
T smart00262 23 LNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVEL 60 (90)
T ss_pred CCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46679999999999999999999999999999998753
No 14
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.77 E-value=7.8e-09 Score=61.94 Aligned_cols=37 Identities=41% Similarity=0.494 Sum_probs=22.0
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCcc
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN 58 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~ 58 (273)
+|++|++++|+|+.||+.+++|++|+.|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 3455666666666666666666666666666666665
No 15
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.77 E-value=9.8e-09 Score=101.81 Aligned_cols=88 Identities=30% Similarity=0.426 Sum_probs=55.2
Q ss_pred CCCCCccccCCCCCceecC----------------CCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCcc
Q psy8923 2 VGFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVD 64 (273)
Q Consensus 2 ~g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~ 64 (273)
.|.+|..|+.+++|+.+.+ ++|++|+|++|.+++ +|..++++++|+.|+|++|++++ .+|..
T Consensus 153 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~ 231 (968)
T PLN00113 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-EIPYE 231 (968)
T ss_pred cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-cCChh
Confidence 3566777777776665432 255666666666665 46666666666666666666663 56666
Q ss_pred ccCCCCCCEEecccCCCC-Cccchhhh
Q psy8923 65 LFHLEDLTTLDLSHNNIK-QIPDALEN 90 (273)
Q Consensus 65 ~~~l~~L~~L~Ls~N~l~-~ip~~l~~ 90 (273)
+.++++|++|+|++|+++ .+|..+..
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhHhC
Confidence 666666666666666666 55554443
No 16
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.75 E-value=9.7e-09 Score=101.84 Aligned_cols=79 Identities=30% Similarity=0.451 Sum_probs=45.0
Q ss_pred CCCCccccCCCCCceecCCCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCC
Q psy8923 3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l 81 (273)
|.+|..|.+++.| +.|+|++|++++ +|..+..+++|+.|+|++|.+++ .+|..+.++++|+.|+|++|++
T Consensus 489 ~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 489 GAVPRKLGSLSEL--------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG-QIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred CccChhhhhhhcc--------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccc-cCChhHhCcccCCEEECCCCcc
Confidence 4445555544444 446666666654 45556666666666666666663 5555555666666666666666
Q ss_pred C-Cccchhhh
Q psy8923 82 K-QIPDALEN 90 (273)
Q Consensus 82 ~-~ip~~l~~ 90 (273)
+ .+|..+..
T Consensus 560 ~~~~p~~l~~ 569 (968)
T PLN00113 560 SGEIPKNLGN 569 (968)
T ss_pred cccCChhHhc
Confidence 5 55554443
No 17
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.74 E-value=9.3e-09 Score=61.60 Aligned_cols=41 Identities=39% Similarity=0.612 Sum_probs=36.3
Q ss_pred ccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 44 QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 44 ~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++|++|++++|+|+. +|+.+.+|++|+.|++++|+++++|.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCcC
Confidence 579999999999998 99889999999999999999998865
No 18
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=98.72 E-value=9.6e-09 Score=69.55 Aligned_cols=37 Identities=27% Similarity=0.577 Sum_probs=33.9
Q ss_pred CCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923 237 KNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273 (273)
Q Consensus 237 ~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~ 273 (273)
.+++|||||++.+||+|+|++|+..||..|..+|+++
T Consensus 16 ~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~ 52 (76)
T PF00626_consen 16 NSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQEL 52 (76)
T ss_dssp ETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999998763
No 19
>KOG4194|consensus
Probab=98.69 E-value=1.3e-08 Score=91.59 Aligned_cols=63 Identities=30% Similarity=0.450 Sum_probs=35.5
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccc
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~ 86 (273)
+++.|+|.+|.|+.+. .++.-++.|+.||||.|.|+. ||..-+ .=.++++|+|+.|+++.+..
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~--i~~~sfp~~~ni~~L~La~N~It~l~~ 190 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE--IPKPSFPAKVNIKKLNLASNRITTLET 190 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc--ccCCCCCCCCCceEEeecccccccccc
Confidence 4555666666666654 556666666666666666665 554433 22455555555555555443
No 20
>KOG0472|consensus
Probab=98.64 E-value=2.3e-09 Score=92.29 Aligned_cols=79 Identities=27% Similarity=0.375 Sum_probs=48.3
Q ss_pred CCCCCccccCCCCCceecCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCC
Q psy8923 2 VGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80 (273)
Q Consensus 2 ~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~ 80 (273)
-|.+|+.++.+..|.. |+|.+|.|..+| +|++++.|..|++..|+|+- +|..+. ++.+|..|||..|+
T Consensus 195 L~tlP~~lg~l~~L~~--------LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~--lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 195 LETLPPELGGLESLEL--------LYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM--LPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred hhcCChhhcchhhhHH--------HHhhhcccccCC-CCCccHHHHHHHhcccHHHh--hHHHHhcccccceeeeccccc
Confidence 4678899998888865 666666666655 55555555555555555554 555554 55555555555555
Q ss_pred CCCccchhhhh
Q psy8923 81 IKQIPDALENA 91 (273)
Q Consensus 81 l~~ip~~l~~w 91 (273)
++++|.++..+
T Consensus 264 lke~Pde~clL 274 (565)
T KOG0472|consen 264 LKEVPDEICLL 274 (565)
T ss_pred cccCchHHHHh
Confidence 55555555443
No 21
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=6.6e-08 Score=91.12 Aligned_cols=67 Identities=31% Similarity=0.521 Sum_probs=62.2
Q ss_pred ccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchhhh
Q psy8923 23 TEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALEN 90 (273)
Q Consensus 23 l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~ 90 (273)
++.|+|++|.+++ +|.+++.|++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|+ .+|..+..
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~ 488 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence 5789999999997 78999999999999999999995 89999999999999999999999 89987765
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=3.9e-08 Score=77.24 Aligned_cols=63 Identities=38% Similarity=0.506 Sum_probs=22.3
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~ 86 (273)
.+|+.|+|++|.|+.|+. +..|+.|+.|++++|+|+. +++.+. .+++|+.|+|++|+++.+..
T Consensus 42 ~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~ 105 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNKISDLNE 105 (175)
T ss_dssp TT--EEE-TTS--S--TT-----TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS---SCCC
T ss_pred cCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCcCCChHH
Confidence 355666777776666642 4456666677777777766 655443 46667777777776665543
No 23
>KOG4237|consensus
Probab=98.55 E-value=1.7e-08 Score=86.73 Aligned_cols=85 Identities=22% Similarity=0.269 Sum_probs=70.0
Q ss_pred ccCCCCCceecC---CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEE-ecccCCCCC
Q psy8923 9 FCMASKSESVTI---GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL-DLSHNNIKQ 83 (273)
Q Consensus 9 ~~~~~~l~~~~l---~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L-~Ls~N~l~~ 83 (273)
.|..++|+.+|- .+.+.++|..|.|+.|| .+|+.+++|+.||||+|+|+. .-|.+|.++.+|..| ++++|+|++
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhh
Confidence 466777888774 37888999999999998 899999999999999999998 557777799887655 456699999
Q ss_pred ccchhhhhhhc
Q psy8923 84 IPDALENAKRT 94 (273)
Q Consensus 84 ip~~l~~w~g~ 94 (273)
||...+.-++.
T Consensus 131 l~k~~F~gL~s 141 (498)
T KOG4237|consen 131 LPKGAFGGLSS 141 (498)
T ss_pred hhhhHhhhHHH
Confidence 99987765443
No 24
>KOG0472|consensus
Probab=98.53 E-value=1.6e-08 Score=87.11 Aligned_cols=77 Identities=39% Similarity=0.553 Sum_probs=62.3
Q ss_pred CCCccccCCCCCceecCCCccEEEccCCCCCCchhh-hcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923 4 FEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGE-LTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 4 ~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~-~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
++| +|+.++.|+. |.++.|+|..+|.+ ..+|++|..|||..|++++ +|+.++-+.+|..||||+|-++
T Consensus 220 ~lP-ef~gcs~L~E--------lh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke--~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKE--------LHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE--VPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred cCC-CCCccHHHHH--------HHhcccHHHhhHHHHhcccccceeeecccccccc--CchHHHHhhhhhhhcccCCccc
Confidence 567 8888888866 78888888888855 4488888888888888887 8888888888888888888888
Q ss_pred Cccchhhhh
Q psy8923 83 QIPDALENA 91 (273)
Q Consensus 83 ~ip~~l~~w 91 (273)
.+|..++.+
T Consensus 289 ~Lp~sLgnl 297 (565)
T KOG0472|consen 289 SLPYSLGNL 297 (565)
T ss_pred cCCcccccc
Confidence 888877764
No 25
>KOG4194|consensus
Probab=98.49 E-value=7.2e-08 Score=86.84 Aligned_cols=133 Identities=23% Similarity=0.248 Sum_probs=92.3
Q ss_pred CCCccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc
Q psy8923 4 FEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF 66 (273)
Q Consensus 4 ~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~ 66 (273)
.||.......+++.+.+ +.|+.||||.|.|+.|| ++|..=.++++|+|++|+|+. +....+
T Consensus 116 ~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~--l~~~~F 193 (873)
T KOG4194|consen 116 RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT--LETGHF 193 (873)
T ss_pred hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc--cccccc
Confidence 35555555555665543 27888999999999998 888888889999999999988 766555
Q ss_pred -CCCCCCEEecccCCCCCccchhhhhhhcccccchhccccccccchh-hhhhhhhhhcccccCCCchhhHhhccCCcEEe
Q psy8923 67 -HLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLR-NFLAAECRTIREEQGDESEEFLSLFNTGISYI 144 (273)
Q Consensus 67 -~l~~L~~L~Ls~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~-~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l 144 (273)
++.+|..|.|+.|+++.+|...|.- ...+..++|. +.+ +-+..-.+||.++.+-+++-.+++.-+
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~Fk~-----------L~~L~~LdLnrN~i--rive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRSFKR-----------LPKLESLDLNRNRI--RIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred cccchheeeecccCcccccCHHHhhh-----------cchhhhhhccccce--eeehhhhhcCchhhhhhhhhhcCcccc
Confidence 7889999999999999999877752 2333333332 111 011222567788888888888887777
Q ss_pred cCCccccc
Q psy8923 145 EGGRTASG 152 (273)
Q Consensus 145 ~g~~~~s~ 152 (273)
+.| .+-+
T Consensus 261 ~DG-~Fy~ 267 (873)
T KOG4194|consen 261 DDG-AFYG 267 (873)
T ss_pred cCc-ceee
Confidence 766 4433
No 26
>KOG4579|consensus
Probab=98.26 E-value=8.5e-08 Score=71.09 Aligned_cols=70 Identities=24% Similarity=0.370 Sum_probs=62.2
Q ss_pred CccEEEccCCCCCCchhhhcCC-ccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhhhhh
Q psy8923 22 LTEHLSIVNNNLEKLFGELTEL-QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKR 93 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l-~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~w~g 93 (273)
.|+..+|++|.+...|+.|... +.++.|+|++|.|+. +|..+..++.|+.|+++.|.|...|..+..++.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIK 124 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHHHHHHh
Confidence 4677899999999999887765 589999999999998 999988999999999999999999998887543
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=4.7e-07 Score=58.43 Aligned_cols=45 Identities=44% Similarity=0.661 Sum_probs=39.7
Q ss_pred ccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhh
Q psy8923 44 QCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 44 ~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
++|+.|++++|+|+. +|...+ ++++|++|++++|+++.+|...+.
T Consensus 1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~ 46 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFS 46 (61)
T ss_dssp TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTT
T ss_pred CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHc
Confidence 579999999999998 887555 899999999999999999886654
No 28
>KOG1259|consensus
Probab=98.25 E-value=2.2e-07 Score=77.59 Aligned_cols=64 Identities=25% Similarity=0.255 Sum_probs=57.6
Q ss_pred CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
+..|+.||||+|.|+.|..+..-++.++.|++|+|.|.. +-. +..+++|+.||||+|.|+++-.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~n-La~L~~L~~LDLS~N~Ls~~~G 346 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQN-LAELPQLQLLDLSGNLLAECVG 346 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehh-hhhcccceEeecccchhHhhhh
Confidence 458899999999999999999999999999999999997 654 7889999999999999987743
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.22 E-value=7.6e-07 Score=69.99 Aligned_cols=64 Identities=33% Similarity=0.461 Sum_probs=21.7
Q ss_pred CccEEEccCCCCCCchhhhc-CCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923 22 LTEHLSIVNNNLEKLFGELT-ELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~-~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
.++.|+|++|.|+.|.. ++ .+.+|+.|+|++|.|+. ++ .+..+++|+.|+|++|+++++++.+.
T Consensus 20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ----------------S---TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S-CHHHH
T ss_pred ccccccccccccccccc-hhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCCccccchH
Confidence 45789999999999853 44 68999999999999998 76 67889999999999999999976543
No 30
>KOG4237|consensus
Probab=98.16 E-value=5.2e-07 Score=77.79 Aligned_cols=86 Identities=22% Similarity=0.264 Sum_probs=67.3
Q ss_pred CCCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhhhhhcccc
Q psy8923 20 IGLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALENAKRTKAT 97 (273)
Q Consensus 20 l~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~w~g~~~~ 97 (273)
+++|+.|+|++|+|+.| +..|.++.+++.|+|..|+|.. +...++ ++.+|+.|+|.+|+|+.+.+..|.-.-...+
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 34668899999999999 4999999999999999999998 777766 9999999999999999887766654333333
Q ss_pred cchhcccccc
Q psy8923 98 LDKRACSAIH 107 (273)
Q Consensus 98 ~~~~~~~~l~ 107 (273)
+..-.++..+
T Consensus 351 l~l~~Np~~C 360 (498)
T KOG4237|consen 351 LNLLSNPFNC 360 (498)
T ss_pred eehccCcccC
Confidence 3333333333
No 31
>KOG0532|consensus
Probab=98.11 E-value=3e-07 Score=82.63 Aligned_cols=64 Identities=34% Similarity=0.578 Sum_probs=31.2
Q ss_pred cEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 24 ~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
..||.+.|.|..+|+.++.|.+|+.|.+.+|++.. +|+.+..| .|..||+|.|+++.||-.+..
T Consensus 169 ~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--lp~El~~L-pLi~lDfScNkis~iPv~fr~ 232 (722)
T KOG0532|consen 169 AHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--LPEELCSL-PLIRLDFSCNKISYLPVDFRK 232 (722)
T ss_pred HHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--CCHHHhCC-ceeeeecccCceeecchhhhh
Confidence 33455555555555555555555555555555544 44444422 344455555555555544443
No 32
>KOG0618|consensus
Probab=98.08 E-value=7e-07 Score=84.32 Aligned_cols=68 Identities=26% Similarity=0.455 Sum_probs=61.5
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhhh
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENA 91 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~w 91 (273)
.|+.|+++.|-|..+|.+++++.+|++|+|.+|++.. +|..+..+.+|+.|++|+|++..+|..+...
T Consensus 69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~--lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~l 136 (1081)
T KOG0618|consen 69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQS--LPASISELKNLQYLDLSFNHFGPIPLVIEVL 136 (1081)
T ss_pred HHhhcccchhhHhhCchhhhhhhcchhheeccchhhc--CchhHHhhhcccccccchhccCCCchhHHhh
Confidence 3466999999999999999999999999999999998 9999999999999999999999999877654
No 33
>KOG0532|consensus
Probab=98.07 E-value=2.5e-07 Score=83.15 Aligned_cols=85 Identities=25% Similarity=0.384 Sum_probs=50.3
Q ss_pred CCCccccCCCCCceecCC--------------CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCC
Q psy8923 4 FEPGTFCMASKSESVTIG--------------LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLE 69 (273)
Q Consensus 4 ~~p~~~~~~~~l~~~~l~--------------~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~ 69 (273)
.||..++++..|.-+.+. -|+.|.+++|+++.+|..++.+..|..||.+.|.+.. +|..+++++
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~ 189 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLT 189 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhh--chHHhhhHH
Confidence 467777777666433221 3455566666666666555655666666666666665 666666666
Q ss_pred CCCEEecccCCCCCccchhhh
Q psy8923 70 DLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 70 ~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
+|+.|.++.|++..+|+++..
T Consensus 190 slr~l~vrRn~l~~lp~El~~ 210 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELCS 210 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHhC
Confidence 666666666666666655553
No 34
>KOG0618|consensus
Probab=98.03 E-value=8.1e-07 Score=83.92 Aligned_cols=62 Identities=29% Similarity=0.391 Sum_probs=42.9
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
+|+.|+|++|+|..+| ..+.++..|+.|+||+|+|+. +|..+.++..|+.|....|+|...|
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFP 446 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeech
Confidence 5566777777777777 556777777777777777776 7766666666666666666666666
No 35
>KOG4579|consensus
Probab=97.97 E-value=6.1e-07 Score=66.61 Aligned_cols=66 Identities=30% Similarity=0.406 Sum_probs=61.6
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
-++.|+|++|.|+.+|.++..++.|+.|+++.|.|.. .|.-+..|.+|..|+...|.+.+||..++
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~--~p~vi~~L~~l~~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA--EPRVIAPLIKLDMLDSPENARAEIDVDLF 143 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc--chHHHHHHHhHHHhcCCCCccccCcHHHh
Confidence 5678999999999999889999999999999999998 99999999999999999999999997654
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.97 E-value=1.1e-05 Score=77.25 Aligned_cols=59 Identities=29% Similarity=0.463 Sum_probs=31.1
Q ss_pred ccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccch
Q psy8923 23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 23 l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
|+.|+|++|+|+.||..+. ++|+.|+|++|+|+. +|..+. ++|+.|+|++|+|+.+|..
T Consensus 243 L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~--LP~~l~--~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 243 IQEMELSINRITELPERLP--SALQSLDLFHNKISC--LPENLP--EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred ccEEECcCCccCcCChhHh--CCCCEEECcCCccCc--cccccC--CCCcEEECCCCccccCccc
Confidence 3444444444444443332 355666666666665 555443 3566666666666665543
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.93 E-value=4.9e-06 Score=79.48 Aligned_cols=62 Identities=27% Similarity=0.328 Sum_probs=35.0
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchh
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDAL 88 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l 88 (273)
+|+.|++++|+|+.||.. ..+|+.|+|++|+|+. +|..++++++|+.|+|++|+|+ .+|..+
T Consensus 403 ~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 344444444444444432 1245556666666665 6666666677777777777776 444444
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.92 E-value=1.4e-05 Score=76.55 Aligned_cols=59 Identities=31% Similarity=0.439 Sum_probs=26.7
Q ss_pred ccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccch
Q psy8923 23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 23 l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
|+.|++++|.|+.||..+. ++|+.|+|++|+|+. +|..+. ++|+.|+|++|+|+.+|..
T Consensus 327 L~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~--LP~~lp--~~L~~LdLs~N~Lt~LP~~ 385 (754)
T PRK15370 327 LKTLEAGENALTSLPASLP--PELQVLDVSKNQITV--LPETLP--PTITTLDVSRNALTNLPEN 385 (754)
T ss_pred ceeccccCCccccCChhhc--CcccEEECCCCCCCc--CChhhc--CCcCEEECCCCcCCCCCHh
Confidence 4444444444444443332 344555555555544 444331 3455555555555544443
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.90 E-value=9.6e-06 Score=77.55 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=26.7
Q ss_pred ccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccch
Q psy8923 44 QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 44 ~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
++|+.|+|++|+|+. +|.. .++|+.|++|+|+|+.+|..
T Consensus 382 ~~L~~LdLs~N~Lt~--LP~l---~s~L~~LdLS~N~LssIP~l 420 (788)
T PRK15387 382 SGLKELIVSGNRLTS--LPVL---PSELKELMVSGNRLTSLPML 420 (788)
T ss_pred cccceEEecCCcccC--CCCc---ccCCCEEEccCCcCCCCCcc
Confidence 356777777777776 6643 25677777777777777754
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.87 E-value=5.7e-06 Score=73.88 Aligned_cols=63 Identities=33% Similarity=0.513 Sum_probs=31.3
Q ss_pred ccEEEccCCCCCCchhhhcCCc-cCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccch
Q psy8923 23 TEHLSIVNNNLEKLFGELTELQ-CLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 23 l~~L~l~~N~l~~lp~~~~~l~-~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
++.|++.+|.++.||+..+.+. +|+.|++++|++.. +|..+..+++|+.|++++|+++.+|..
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~ 181 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKL 181 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhh
Confidence 4445555555555554444442 55555555555554 444444555555555555555544443
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.63 E-value=2.5e-05 Score=69.80 Aligned_cols=65 Identities=32% Similarity=0.562 Sum_probs=61.0
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchh
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDAL 88 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l 88 (273)
+|+.|++++|.|+.+|..++.++.|+.|+++.|+++. +|.....+++|+.|++++|+++.+|..+
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i~~l~~~~ 205 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISDLPPEI 205 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCccccCchhh
Confidence 5688999999999999999999999999999999998 9988889999999999999999999875
No 42
>KOG1259|consensus
Probab=97.55 E-value=2.4e-05 Score=65.59 Aligned_cols=62 Identities=24% Similarity=0.305 Sum_probs=51.9
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
+.++.|++|+|.|+.+.. +..|++|+.||||+|.|+. +.-.--.+.+.+.|.|+.|.+..+.
T Consensus 307 Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNIKtL~La~N~iE~LS 368 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE--CVGWHLKLGNIKTLKLAQNKIETLS 368 (490)
T ss_pred cceeEEeccccceeeehh-hhhcccceEeecccchhHh--hhhhHhhhcCEeeeehhhhhHhhhh
Confidence 477899999999998865 8889999999999999998 6655557788888888888877664
No 43
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.54 E-value=0.00018 Score=72.92 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=57.8
Q ss_pred CCCCccccCCCCCceecC---------------CCccEEEccCC-CCCCchhhhcCCccCCEeeccCCcCccCCCCcccc
Q psy8923 3 GFEPGTFCMASKSESVTI---------------GLTEHLSIVNN-NLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF 66 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l---------------~~l~~L~l~~N-~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~ 66 (273)
+.+|.+++++++|+.+.+ ++|+.|+|++| .++.+|.. .++|+.|+|++|.++. +|..+.
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~--iP~si~ 866 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE--VPWWIE 866 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc--ChHHHh
Confidence 457888888777766533 34666666664 33345432 3577788888888887 888888
Q ss_pred CCCCCCEEeccc-CCCCCccchhhh
Q psy8923 67 HLEDLTTLDLSH-NNIKQIPDALEN 90 (273)
Q Consensus 67 ~l~~L~~L~Ls~-N~l~~ip~~l~~ 90 (273)
.+++|+.|+|++ |+|+.+|..+..
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCccccc
Confidence 888888888887 677777765544
No 44
>KOG1859|consensus
Probab=97.43 E-value=1.5e-05 Score=73.98 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=18.2
Q ss_pred ccEEEccCCCCCCchhhhcCCccCCEeeccCCcCcc
Q psy8923 23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN 58 (273)
Q Consensus 23 l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~ 58 (273)
|+.|+|++|+++... .+..|++|++|||+.|.|..
T Consensus 189 le~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~ 223 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH 223 (1096)
T ss_pred hhhhccchhhhhhhH-HHHhcccccccccccchhcc
Confidence 344555555555443 44455555555555555554
No 45
>KOG0531|consensus
Probab=97.43 E-value=5.9e-05 Score=67.95 Aligned_cols=63 Identities=35% Similarity=0.450 Sum_probs=42.5
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
.+|+.|++.+|+|+.|...+..+++|++|+|++|+|+. +. .+..++.|+.|++++|+++.++.
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--i~-~l~~l~~L~~L~l~~N~i~~~~~ 157 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--LE-GLSTLTLLKELNLSGNLISDISG 157 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheecccccccc--cc-chhhccchhhheeccCcchhccC
Confidence 35566777777777776656677777777777777776 43 44455667777777777666554
No 46
>KOG1859|consensus
Probab=97.41 E-value=1.2e-05 Score=74.67 Aligned_cols=65 Identities=31% Similarity=0.375 Sum_probs=59.0
Q ss_pred cCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 19 TIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 19 ~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++..|...+.+.|.++.+..++.-++.|+.|||++|+++. +- .+..|+.|++||||+|.|+.+|.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~--v~-~Lr~l~~LkhLDlsyN~L~~vp~ 226 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK--VD-NLRRLPKLKHLDLSYNCLRHVPQ 226 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh--hH-HHHhcccccccccccchhccccc
Confidence 4557788999999999999999999999999999999997 54 77799999999999999999986
No 47
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.36 E-value=5.6e-05 Score=37.88 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=11.6
Q ss_pred ccEEEccCCCCCCchhhhcC
Q psy8923 23 TEHLSIVNNNLEKLFGELTE 42 (273)
Q Consensus 23 l~~L~l~~N~l~~lp~~~~~ 42 (273)
|++|||++|+|+.||++|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 45566666666666654543
No 48
>KOG4658|consensus
Probab=97.30 E-value=0.00011 Score=71.66 Aligned_cols=56 Identities=32% Similarity=0.405 Sum_probs=29.3
Q ss_pred ccEEEccCC-CCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCC
Q psy8923 23 TEHLSIVNN-NLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80 (273)
Q Consensus 23 l~~L~l~~N-~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~ 80 (273)
|++|||++| .+..+|.+++.|-+|++|+|++..++. +|..+.+|..|.+|++.++.
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheecccccc
Confidence 344555543 334455555555555555555555554 55555555555555555443
No 49
>KOG1644|consensus
Probab=97.16 E-value=0.00034 Score=55.55 Aligned_cols=63 Identities=37% Similarity=0.483 Sum_probs=50.1
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~ 86 (273)
.+...+||++|.|..++ .|..++.|.+|.|.+|+|+. |.+.+. -+++|..|.|.+|+|.++.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~d 105 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGD 105 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhh
Confidence 36677899999988764 35568899999999999998 887777 55789999999998876643
No 50
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.10 E-value=0.00098 Score=67.64 Aligned_cols=68 Identities=32% Similarity=0.504 Sum_probs=45.9
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCc-CccCCCCccccCCCCCCEEecccCC-CCCccchhhhh
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNK-IKNSGIPVDLFHLEDLTTLDLSHNN-IKQIPDALENA 91 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~-l~~~~ip~~~~~l~~L~~L~Ls~N~-l~~ip~~l~~w 91 (273)
.+|+.|+|++|+|+.+|..+..+++|+.|+|++|. +.. +| .+..+++|+.|+|++|. +..+|..+..+
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~--ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE--IP-DLSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc--CC-ccccCCcccEEEecCCCCccccchhhhcc
Confidence 36777777777777777767777777777777654 443 66 35667777777777653 44677665443
No 51
>KOG0531|consensus
Probab=97.03 E-value=0.00022 Score=64.27 Aligned_cols=63 Identities=38% Similarity=0.445 Sum_probs=52.4
Q ss_pred CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
+.+|++|+|++|+|+.|.+ +..|+.|+.|++++|.|+. ++ .+..+++|+.+++++|+++.++.
T Consensus 117 ~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~--~~-~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISD--IS-GLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred hhcchheeccccccccccc-hhhccchhhheeccCcchh--cc-CCccchhhhcccCCcchhhhhhh
Confidence 3467889999999999853 3456679999999999997 54 55669999999999999998776
No 52
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.99 E-value=0.00045 Score=32.15 Aligned_cols=16 Identities=50% Similarity=0.879 Sum_probs=7.4
Q ss_pred CCCEEecccCCCCCcc
Q psy8923 70 DLTTLDLSHNNIKQIP 85 (273)
Q Consensus 70 ~L~~L~Ls~N~l~~ip 85 (273)
+|+.|+|++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 53
>KOG4658|consensus
Probab=96.99 E-value=0.00045 Score=67.55 Aligned_cols=70 Identities=31% Similarity=0.367 Sum_probs=60.7
Q ss_pred CccEEEccCCC--CCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhhhh
Q psy8923 22 LTEHLSIVNNN--LEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAK 92 (273)
Q Consensus 22 ~l~~L~l~~N~--l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~w~ 92 (273)
+|+.|-+..|. +..++ ..|..|+.|+.|||++|.=- +.+|+.+++|-+|++|+|++..++.+|..+..+.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLK 618 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCccccchHHHHHH
Confidence 67889999996 67777 55888999999999987633 2599999999999999999999999999988764
No 54
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.97 E-value=0.00068 Score=58.44 Aligned_cols=63 Identities=30% Similarity=0.335 Sum_probs=47.2
Q ss_pred CCccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCCC
Q psy8923 21 GLTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIKQ 83 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~~ 83 (273)
++|+.|+|++|.+++ ++..+..+++|+.|++++|.+++. .++..+..+++|+.|+|++|.++.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 466889999999883 445677788899999999988831 133445566789999999998873
No 55
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.92 E-value=0.00065 Score=58.55 Aligned_cols=61 Identities=30% Similarity=0.399 Sum_probs=49.4
Q ss_pred CccEEEccCCCCCC-----chhhhcCC-ccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCC
Q psy8923 22 LTEHLSIVNNNLEK-----LFGELTEL-QCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 22 ~l~~L~l~~N~l~~-----lp~~~~~l-~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
+|+.|++++|+++. +...+..+ ++|+.|++++|.++.. .++..+..+++|+.|++++|.++
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 38899999999984 34567777 9999999999999931 13445567889999999999998
No 56
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.89 E-value=0.00034 Score=35.00 Aligned_cols=17 Identities=53% Similarity=0.772 Sum_probs=8.2
Q ss_pred CCEEecccCCCCCccch
Q psy8923 71 LTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 71 L~~L~Ls~N~l~~ip~~ 87 (273)
|++||||+|+|+.||+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44455555554444443
No 57
>KOG2739|consensus
Probab=96.84 E-value=0.00068 Score=55.81 Aligned_cols=42 Identities=33% Similarity=0.464 Sum_probs=22.3
Q ss_pred hcCCccCCEeeccCC--cCccCCCCccccCCCCCCEEecccCCCC
Q psy8923 40 LTELQCLRTLNLRYN--KIKNSGIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 40 ~~~l~~L~~L~l~~N--~l~~~~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
|..|++|+.|.+|.| +++. .++.-+-.+++|++|+||.|+++
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCccc
Confidence 334556666666666 4443 34433334466666666666554
No 58
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.78 E-value=0.0011 Score=34.58 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=16.7
Q ss_pred CCCCCEEecccCCCCCccchhh
Q psy8923 68 LEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 68 l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
|++|+.|+|++|+|+.||...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4677888888888888877655
No 59
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.78 E-value=0.0011 Score=34.58 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=16.7
Q ss_pred CCCCCEEecccCCCCCccchhh
Q psy8923 68 LEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 68 l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
|++|+.|+|++|+|+.||...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4677888888888888877655
No 60
>KOG1644|consensus
Probab=96.62 E-value=0.002 Score=51.22 Aligned_cols=63 Identities=25% Similarity=0.261 Sum_probs=52.5
Q ss_pred CCccEEEccCCCCCCchhhhcC-CccCCEeeccCCcCccCCCCc--cccCCCCCCEEecccCCCCCcc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTE-LQCLRTLNLRYNKIKNSGIPV--DLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~-l~~L~~L~l~~N~l~~~~ip~--~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
+.|.+|.|++|+|+.|-+.+.. +++|+.|.|.+|+|.. +-+ .+..|+.|++|.+-+|+.+..+
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~--l~dl~pLa~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE--LGDLDPLASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhh--hhhcchhccCCccceeeecCCchhccc
Confidence 5789999999999999655554 5889999999999987 654 3458899999999999988554
No 61
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.15 E-value=0.003 Score=29.33 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=5.3
Q ss_pred ccEEEccCCCCCCch
Q psy8923 23 TEHLSIVNNNLEKLF 37 (273)
Q Consensus 23 l~~L~l~~N~l~~lp 37 (273)
|+.|+|++|+|+.+|
T Consensus 3 L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 3 LRTLDLSNNRLTSLP 17 (17)
T ss_dssp -SEEEETSS--SSE-
T ss_pred cCEEECCCCCCCCCc
Confidence 344555555544443
No 62
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.09 E-value=0.0041 Score=32.30 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=13.6
Q ss_pred CccCCEeeccCCcCccCCCCcccc
Q psy8923 43 LQCLRTLNLRYNKIKNSGIPVDLF 66 (273)
Q Consensus 43 l~~L~~L~l~~N~l~~~~ip~~~~ 66 (273)
|++|+.|+|++|+|+. +|..++
T Consensus 1 L~~L~~L~L~~N~l~~--lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSS--LPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCc--CCHHHc
Confidence 3556666666666666 665544
No 63
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.09 E-value=0.0041 Score=32.30 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=13.6
Q ss_pred CccCCEeeccCCcCccCCCCcccc
Q psy8923 43 LQCLRTLNLRYNKIKNSGIPVDLF 66 (273)
Q Consensus 43 l~~L~~L~l~~N~l~~~~ip~~~~ 66 (273)
|++|+.|+|++|+|+. +|..++
T Consensus 1 L~~L~~L~L~~N~l~~--lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSS--LPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCc--CCHHHc
Confidence 3556666666666666 665544
No 64
>KOG2739|consensus
Probab=96.03 E-value=0.0046 Score=51.03 Aligned_cols=61 Identities=30% Similarity=0.337 Sum_probs=47.8
Q ss_pred CCccEEEccCC--CCCC-chhhhcCCccCCEeeccCCcCccCCCCccc---cCCCCCCEEecccCCCCCc
Q psy8923 21 GLTEHLSIVNN--NLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDL---FHLEDLTTLDLSHNNIKQI 84 (273)
Q Consensus 21 ~~l~~L~l~~N--~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~---~~l~~L~~L~Ls~N~l~~i 84 (273)
++|+.|.++.| ++++ ++.....+++|++|+|++|+|+. +.++ ..+.+|..|++..+.-+.+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~---lstl~pl~~l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD---LSTLRPLKELENLKSLDLFNCSVTNL 131 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc---ccccchhhhhcchhhhhcccCCcccc
Confidence 58999999999 6664 66555566999999999999983 4443 4778899999988876543
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.01 E-value=0.0072 Score=53.78 Aligned_cols=63 Identities=21% Similarity=0.351 Sum_probs=40.6
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccC-CcCccCCCCccccCCCCCCEEecccC-CCCCccchhhh
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRY-NKIKNSGIPVDLFHLEDLTTLDLSHN-NIKQIPDALEN 90 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~-N~l~~~~ip~~~~~l~~L~~L~Ls~N-~l~~ip~~l~~ 90 (273)
.++++|++++|.|+.+|. --++|+.|.+++ ++++. +|..+ .++|+.|++++| +++.+|..+..
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~ 116 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEISGLPESVRS 116 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccccccccccce
Confidence 456778888888888772 124577777775 55665 66544 246777777776 56666665443
No 66
>KOG3207|consensus
Probab=95.96 E-value=0.0042 Score=54.88 Aligned_cols=65 Identities=28% Similarity=0.303 Sum_probs=42.5
Q ss_pred CccEEEccCCCCCCch--hhhcCCccCCEeeccCCcCccCCCCcc-----ccCCCCCCEEecccCCCCCccc
Q psy8923 22 LTEHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPVD-----LFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp--~~~~~l~~L~~L~l~~N~l~~~~ip~~-----~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
.|+.|||++|++-..+ ...+.|+.|..|+++.+.+.+=.+|+. ...+++|++|+++.|++...++
T Consensus 247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 4566777777777665 666777777777777777765223333 2356777888888887765553
No 67
>KOG3207|consensus
Probab=95.34 E-value=0.0041 Score=54.92 Aligned_cols=66 Identities=24% Similarity=0.192 Sum_probs=42.2
Q ss_pred cCCCccEEEccCCCCCC--chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923 19 TIGLTEHLSIVNNNLEK--LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 19 ~l~~l~~L~l~~N~l~~--lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
.++.|+.|.|+.+.|+. +-......++|..|+|..|..-. .--.....+..|+.|||++|++-..+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccc
Confidence 34577778888888775 44555667788888888774221 01222334567778888888777665
No 68
>KOG2982|consensus
Probab=95.18 E-value=0.019 Score=48.66 Aligned_cols=60 Identities=25% Similarity=0.297 Sum_probs=42.2
Q ss_pred CccEEEccCCCCCCc---hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923 22 LTEHLSIVNNNLEKL---FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 22 ~l~~L~l~~N~l~~l---p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
.++.|||..|.|+.+ -..+.+|+.|++|+|+.|.|+. .|-.-=..+.+|+.|-|.+..|.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCC
Confidence 567799999999975 4567789999999999999986 33211123456666666655443
No 69
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=95.04 E-value=0.013 Score=30.25 Aligned_cols=18 Identities=28% Similarity=0.669 Sum_probs=15.0
Q ss_pred CCCCEEecccCCCCCccc
Q psy8923 69 EDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 69 ~~L~~L~Ls~N~l~~ip~ 86 (273)
++|+.|++|+|+|+++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888898888887
No 70
>KOG2982|consensus
Probab=95.03 E-value=0.031 Score=47.37 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=45.6
Q ss_pred CCCccEEEccCCCCCCchhhh-cCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923 20 IGLTEHLSIVNNNLEKLFGEL-TELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 20 l~~l~~L~l~~N~l~~lp~~~-~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
++.|+.|+|+.|++..--.++ ..+.+|+.|-|.+-.|.-...-.....++.++.|.+|.|++.
T Consensus 96 lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 96 LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 467899999999999622222 467899999988877654223344557888899999999655
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.95 E-value=0.028 Score=50.14 Aligned_cols=59 Identities=27% Similarity=0.481 Sum_probs=34.4
Q ss_pred CccEEEccC-CCCCCchhhhcCCccCCEeeccCC-cCccCCCCccccCCCCCCEEecccCC---CCCccchhhh
Q psy8923 22 LTEHLSIVN-NNLEKLFGELTELQCLRTLNLRYN-KIKNSGIPVDLFHLEDLTTLDLSHNN---IKQIPDALEN 90 (273)
Q Consensus 22 ~l~~L~l~~-N~l~~lp~~~~~l~~L~~L~l~~N-~l~~~~ip~~~~~l~~L~~L~Ls~N~---l~~ip~~l~~ 90 (273)
+|+.|.+++ +.++.+|..+. ++|+.|++++| ++.. +|+. |+.|+++.|. +..+|..|..
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s--LP~s------Le~L~L~~n~~~~L~~LPssLk~ 136 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG--LPES------VRSLEIKGSATDSIKNVPNGLTS 136 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc--cccc------cceEEeCCCCCcccccCcchHhh
Confidence 577777776 56666665442 56777777776 5555 6543 4444555544 3355554443
No 72
>KOG3665|consensus
Probab=94.78 E-value=0.018 Score=55.09 Aligned_cols=67 Identities=24% Similarity=0.380 Sum_probs=49.5
Q ss_pred cCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 19 TIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 19 ~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++++|..||+|+.+|+.+ .-++.|++|+.|-+.+=.+....--..+++|++|+.||+|..+....+.
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ 237 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK 237 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchH
Confidence 456889999999999977 5567788888887777666541122367788999999999887775553
No 73
>KOG1984|consensus
Probab=94.77 E-value=0.058 Score=51.53 Aligned_cols=59 Identities=24% Similarity=0.341 Sum_probs=43.6
Q ss_pred eeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHH
Q psy8923 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFL 221 (273)
Q Consensus 163 ~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~ 221 (273)
+|++-++.-...+....+....|.++.++|+...||+|++|.++|+|+|...+.+-.+-
T Consensus 859 Prl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~ 917 (1007)
T KOG1984|consen 859 PRLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQD 917 (1007)
T ss_pred cceeeeeccccccccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHHHHH
Confidence 67877776521111222344557889999999999999999999999999998885443
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.39 E-value=0.062 Score=39.54 Aligned_cols=70 Identities=21% Similarity=0.387 Sum_probs=35.9
Q ss_pred cccCCCCCceecCCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCcc
Q psy8923 8 TFCMASKSESVTIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 8 ~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip 85 (273)
.|..+++| +.+.+.+ .++.|+ ..|.++++|+.+.+..+ +.. ++...+ ++++|+.+.+.. .+..++
T Consensus 7 ~F~~~~~l--------~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~-~~~~i~ 73 (129)
T PF13306_consen 7 AFYNCSNL--------ESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPN-NLKSIG 73 (129)
T ss_dssp TTTT-TT----------EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETS-TT-EE-
T ss_pred HHhCCCCC--------CEEEECC-CeeEeChhhccccccccccccccc-ccc--cceeeeecccccccccccc-cccccc
Confidence 45555566 4466663 566676 66777777888877764 665 666544 666777777754 555566
Q ss_pred chhhh
Q psy8923 86 DALEN 90 (273)
Q Consensus 86 ~~l~~ 90 (273)
...+.
T Consensus 74 ~~~F~ 78 (129)
T PF13306_consen 74 DNAFS 78 (129)
T ss_dssp TTTTT
T ss_pred ccccc
Confidence 54444
No 75
>KOG0473|consensus
Probab=94.11 E-value=0.0022 Score=52.22 Aligned_cols=59 Identities=8% Similarity=-0.024 Sum_probs=40.4
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
.|..|+++.|+|.-+|..++++..+..+++..|+++. .|.+++.+++++.+++-.|.|+
T Consensus 66 ~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~--~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 66 RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ--QPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh--CCccccccCCcchhhhccCcch
Confidence 4555666667776677777777777777777777776 6777777777777776666654
No 76
>KOG0473|consensus
Probab=93.63 E-value=0.0013 Score=53.42 Aligned_cols=68 Identities=25% Similarity=0.260 Sum_probs=57.4
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
...+.||++.|++-.+-..|..++.|..|+++.|++.. +|.+++.+..+..+++..|+++..|-....
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence 35677999999998888888888999999999999988 999999888888889888888877765543
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=93.04 E-value=0.073 Score=27.63 Aligned_cols=18 Identities=56% Similarity=0.792 Sum_probs=13.1
Q ss_pred CCCCCEEecccCCCCCcc
Q psy8923 68 LEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 68 l~~L~~L~Ls~N~l~~ip 85 (273)
+++|+.|+|+.|+++.|.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 467788888888877653
No 78
>KOG2123|consensus
Probab=92.75 E-value=0.011 Score=49.54 Aligned_cols=60 Identities=33% Similarity=0.311 Sum_probs=39.3
Q ss_pred CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCc--cccCCCCCCEEecccCCCC
Q psy8923 20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPV--DLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~--~~~~l~~L~~L~Ls~N~l~ 82 (273)
++.|++|.||-|+|+.+. .+..+++|+.|+|..|.|.. +-+ -+.++++|+.|-|..|...
T Consensus 40 Mp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~s--ldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIES--LDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred cccceeEEeeccccccch-hHHHHHHHHHHHHHhccccc--HHHHHHHhcCchhhhHhhccCCcc
Confidence 345667777777777663 24456777777777777776 543 2336777777777777654
No 79
>KOG1909|consensus
Probab=92.66 E-value=0.059 Score=46.49 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=31.3
Q ss_pred CccEEEccCCCCCC--c---hhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCC
Q psy8923 22 LTEHLSIVNNNLEK--L---FGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 22 ~l~~L~l~~N~l~~--l---p~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
.|+.+.++.|.|.. + -..|..+++|+.|||..|.++.. .+-..+..+++|+.|++++..++
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 33445566665552 2 24555666666666666665530 01123334555666666665554
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.12 E-value=0.094 Score=27.14 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=12.9
Q ss_pred ccCCEeeccCCcCccCCCCc
Q psy8923 44 QCLRTLNLRYNKIKNSGIPV 63 (273)
Q Consensus 44 ~~L~~L~l~~N~l~~~~ip~ 63 (273)
++|+.|++++|+|+. +|+
T Consensus 2 ~~L~~L~vs~N~Lt~--LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTS--LPE 19 (26)
T ss_pred cccceeecCCCcccc--Ccc
Confidence 357777777777777 775
No 81
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=91.49 E-value=0.18 Score=47.76 Aligned_cols=26 Identities=31% Similarity=0.744 Sum_probs=23.3
Q ss_pred EEEEeCCceEEEEeCCCcchHhHHhH
Q psy8923 241 VFLLDAGLKLFIWNGPKAKNTFKSKT 266 (273)
Q Consensus 241 v~~ld~~~~~~~w~G~~a~~~~~~~~ 266 (273)
+|++|+|.++|+|+|+.|++.=..+.
T Consensus 748 lYLidtg~~iflw~g~d~~p~Ll~dl 773 (861)
T COG5028 748 LYLIDTGQKIFLWFGKDAVPSLLQDL 773 (861)
T ss_pred eEEEEcCCEEEEEecCCCCHHHHHHh
Confidence 99999999999999999998766554
No 82
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=91.41 E-value=0.21 Score=47.24 Aligned_cols=60 Identities=27% Similarity=0.445 Sum_probs=43.6
Q ss_pred eeEEEEecCcccCC----CCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHh
Q psy8923 163 TRLYRVHAPLHQAQ----ASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLL 222 (273)
Q Consensus 163 ~~L~~v~g~~~~~~----~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~ 222 (273)
|++|-+++-+-+.+ ........+.++.+.|+++.+|++|+|.++|+|.|+.+++.-.+..
T Consensus 710 P~lyalHdm~~e~~l~~~~~~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dl 773 (861)
T COG5028 710 PTLYALHDMPIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDL 773 (861)
T ss_pred cceeeecccccccCCCcccccccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHh
Confidence 67887774321211 1233444456778899999999999999999999999999865554
No 83
>PTZ00395 Sec24-related protein; Provisional
Probab=89.48 E-value=0.33 Score=48.98 Aligned_cols=25 Identities=24% Similarity=0.595 Sum_probs=22.5
Q ss_pred EEEEeCCceEEEEeCCCcchHhHHh
Q psy8923 241 VFLLDAGLKLFIWNGPKAKNTFKSK 265 (273)
Q Consensus 241 v~~ld~~~~~~~w~G~~a~~~~~~~ 265 (273)
|||||+|..+|+|||+.++++--.+
T Consensus 1446 IYLLDNGe~IyLWVG~~V~PqLLqD 1470 (1560)
T PTZ00395 1446 IYLLDACTHFYLYFGFHSDANFAKE 1470 (1560)
T ss_pred EEEEECCCEEEEEECCCCCHHHHHH
Confidence 9999999999999999999876544
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.23 E-value=0.5 Score=34.54 Aligned_cols=59 Identities=20% Similarity=0.411 Sum_probs=28.5
Q ss_pred cEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccch
Q psy8923 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 24 ~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
+.+.+.++ ++.++ ..|..+++|+.+.+.. .+.. ++...+ .+++|+.+++..| ++.++..
T Consensus 38 ~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~--i~~~~F~~~~~l~~i~~~~~-~~~i~~~ 98 (129)
T PF13306_consen 38 KSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS--IGDNAFSNCTNLKNIDIPSN-ITEIGSS 98 (129)
T ss_dssp SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E--E-TTTTTT-TTECEEEETTT--BEEHTT
T ss_pred cccccccc-ccccceeeeecccccccccccc-cccc--cccccccccccccccccCcc-ccEEchh
Confidence 44665553 66665 5566666666666654 4443 444444 3666666666544 4455443
No 85
>KOG1909|consensus
Probab=89.17 E-value=0.27 Score=42.55 Aligned_cols=63 Identities=25% Similarity=0.280 Sum_probs=50.5
Q ss_pred CCccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccCCC---CccccCCCCCCEEecccCCCCC
Q psy8923 21 GLTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNSGI---PVDLFHLEDLTTLDLSHNNIKQ 83 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~~i---p~~~~~l~~L~~L~Ls~N~l~~ 83 (273)
+.|++++.++|++.. +-..|...+.|+.+.++.|.|....+ -.++..+++|+.|||..|-|+.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 478999999999985 34667788999999999999864112 2356689999999999999983
No 86
>KOG3665|consensus
Probab=89.10 E-value=0.18 Score=48.51 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=49.8
Q ss_pred CccEEEccCCCCC--CchhhhcC-CccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923 22 LTEHLSIVNNNLE--KLFGELTE-LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 22 ~l~~L~l~~N~l~--~lp~~~~~-l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
+|++|++++...- +.|..++. ||+|+.|.+++=.+....+-.-..++++|..||+|+-+++.+ .++..
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~ 193 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISR 193 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhc
Confidence 7888999997554 37766665 699999999987776522222233889999999999998877 44444
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.08 E-value=0.17 Score=25.43 Aligned_cols=15 Identities=53% Similarity=0.663 Sum_probs=9.6
Q ss_pred CCCCCEEecccCCCC
Q psy8923 68 LEDLTTLDLSHNNIK 82 (273)
Q Consensus 68 l~~L~~L~Ls~N~l~ 82 (273)
+++|+.|+|++|+|+
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 467888888888876
No 88
>KOG1985|consensus
Probab=88.83 E-value=0.34 Score=46.27 Aligned_cols=21 Identities=38% Similarity=0.975 Sum_probs=19.8
Q ss_pred EEEEeCCceEEEEeCCCcchH
Q psy8923 241 VFLLDAGLKLFIWNGPKAKNT 261 (273)
Q Consensus 241 v~~ld~~~~~~~w~G~~a~~~ 261 (273)
+|++|+|.++|+|+|+.|.+.
T Consensus 775 lyL~D~g~~lfl~vg~~a~P~ 795 (887)
T KOG1985|consen 775 LYLMDTGTTLFLWVGSNADPS 795 (887)
T ss_pred eEEEecCcEEEEEEcCCCCcc
Confidence 999999999999999999875
No 89
>KOG1984|consensus
Probab=88.69 E-value=0.55 Score=45.21 Aligned_cols=29 Identities=28% Similarity=0.635 Sum_probs=24.9
Q ss_pred CceEEEEeCCceEEEEeCCCcchHhHHhH
Q psy8923 238 NTFVFLLDAGLKLFIWNGPKAKNTFKSKT 266 (273)
Q Consensus 238 ~~~v~~ld~~~~~~~w~G~~a~~~~~~~~ 266 (273)
+..||+||+|..+|+|+|+..+..-.++-
T Consensus 890 negiYll~nG~~~ylwvg~sv~~~llQ~l 918 (1007)
T KOG1984|consen 890 NEGIYLLDNGQKIYLWVGESVDPDLLQDL 918 (1007)
T ss_pred CCceEEEecCcEEEEEecCCCCHHHHHHH
Confidence 34599999999999999999998877654
No 90
>PTZ00395 Sec24-related protein; Provisional
Probab=87.18 E-value=0.62 Score=47.19 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=32.1
Q ss_pred EecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHH
Q psy8923 184 PVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFV 219 (273)
Q Consensus 184 ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~ 219 (273)
.++++.+.|.++-||+||+|..+|+|+|+.+++.-.
T Consensus 1433 ~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqLL 1468 (1560)
T PTZ00395 1433 TIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANFA 1468 (1560)
T ss_pred cccchHHHhcCCcEEEEECCCEEEEEECCCCCHHHH
Confidence 356788899999999999999999999999998754
No 91
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.83 E-value=0.58 Score=39.42 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=9.5
Q ss_pred CccEEEccCCCCCC
Q psy8923 22 LTEHLSIVNNNLEK 35 (273)
Q Consensus 22 ~l~~L~l~~N~l~~ 35 (273)
.++.++||+|.|..
T Consensus 31 ~~~evdLSGNtigt 44 (388)
T COG5238 31 ELVEVDLSGNTIGT 44 (388)
T ss_pred ceeEEeccCCcccH
Confidence 45667777777763
No 92
>KOG1985|consensus
Probab=86.04 E-value=0.61 Score=44.64 Aligned_cols=58 Identities=29% Similarity=0.560 Sum_probs=40.5
Q ss_pred eeEEEEecCcccCCCC---ce--EEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHH
Q psy8923 163 TRLYRVHAPLHQAQAS---SI--HLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVF 220 (273)
Q Consensus 163 ~~L~~v~g~~~~~~~~---~~--~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~ 220 (273)
+.||+++.-..+.+.. .. .-...+.++..|.++-+|++|+|..+|+|.|+.|++.--+
T Consensus 736 P~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~ll~ 798 (887)
T KOG1985|consen 736 PTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSLLF 798 (887)
T ss_pred ccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCccccc
Confidence 6788887652211100 00 0122457788899999999999999999999999987433
No 93
>KOG2123|consensus
Probab=85.64 E-value=0.071 Score=44.85 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=48.0
Q ss_pred ccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 23 l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
.+.|+.-+..|+.| ..+..|+.|+.|.||-|+|+. + ..+..|++|+.|+|..|.|.++-+
T Consensus 21 vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIss--L-~pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISS--L-APLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred hhhhcccCCCccHH-HHHHhcccceeEEeecccccc--c-hhHHHHHHHHHHHHHhcccccHHH
Confidence 34466666666654 446679999999999999997 4 356789999999999999887765
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.57 E-value=0.65 Score=24.40 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=11.6
Q ss_pred CCCCEEecccCCCC
Q psy8923 69 EDLTTLDLSHNNIK 82 (273)
Q Consensus 69 ~~L~~L~Ls~N~l~ 82 (273)
++|++|||++|.|+
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57888999999876
No 95
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.74 E-value=1.1 Score=37.75 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=38.1
Q ss_pred hhhcCCccCCEeeccCCcCccCCCCcccc----CCCCCCEEecccCCCCCcc
Q psy8923 38 GELTELQCLRTLNLRYNKIKNSGIPVDLF----HLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 38 ~~~~~l~~L~~L~l~~N~l~~~~ip~~~~----~l~~L~~L~Ls~N~l~~ip 85 (273)
+.+.+|++|+..+||.|-+.. ..|+.+. .-+.|.+|.|++|-+..+.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~-~~~e~L~d~is~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGS-EFPEELGDLISSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred HHHhcCCcceeeeccccccCc-ccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence 567788999999999999986 6776544 6688999999999887553
No 96
>KOG2120|consensus
Probab=81.40 E-value=0.18 Score=42.92 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=48.1
Q ss_pred CccEEEccCCCCCC--chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEeccc-CCCC
Q psy8923 22 LTEHLSIVNNNLEK--LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH-NNIK 82 (273)
Q Consensus 22 ~l~~L~l~~N~l~~--lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~-N~l~ 82 (273)
.|++||||+..|+. +-..+..+++|+.|.|-+++|.. .|-..+..=.+|+.|+||. |-|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccc
Confidence 58899999999996 56778889999999999999996 6666666667888888875 3344
No 97
>KOG2120|consensus
Probab=76.86 E-value=1.7 Score=37.19 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=37.5
Q ss_pred CccEEEccCCC--CC--CchhhhcCCccCCEeeccCCc-CccCCCCccccCCCCCCEEecccCC
Q psy8923 22 LTEHLSIVNNN--LE--KLFGELTELQCLRTLNLRYNK-IKNSGIPVDLFHLEDLTTLDLSHNN 80 (273)
Q Consensus 22 ~l~~L~l~~N~--l~--~lp~~~~~l~~L~~L~l~~N~-l~~~~ip~~~~~l~~L~~L~Ls~N~ 80 (273)
.|+.|+|++.. +. .+..--..+++|..||||.|. |+. ..-..++.++.|++|.||...
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhc
Confidence 56667777631 11 233445567888888888655 453 444566678888888887765
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.36 E-value=2.1 Score=46.79 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=27.8
Q ss_pred EccCCCCCCch-hhhcCCccCCEeeccCCcCcc
Q psy8923 27 SIVNNNLEKLF-GELTELQCLRTLNLRYNKIKN 58 (273)
Q Consensus 27 ~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~ 58 (273)
||++|+|+.|| ..|..|++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 68899999998 778899999999999988753
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=71.38 E-value=2.6 Score=46.07 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=33.4
Q ss_pred eccCCcCccCCCCcccc-CCCCCCEEecccCCCC-Ccc-chhhhhhh
Q psy8923 50 NLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK-QIP-DALENAKR 93 (273)
Q Consensus 50 ~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~-~ip-~~l~~w~g 93 (273)
||++|+|+. ||...+ .+++|+.|+|++|.+. .-. ..+..|+.
T Consensus 1 DLSnN~Lst--Lp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~ 45 (2740)
T TIGR00864 1 DISNNKIST--IEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAE 45 (2740)
T ss_pred CCCCCcCCc--cChHHhccCCCceEEEeeCCccccccccHHHHHHHH
Confidence 689999998 998777 8999999999999988 322 23556653
No 100
>KOG3763|consensus
Probab=70.37 E-value=2.4 Score=39.11 Aligned_cols=61 Identities=31% Similarity=0.232 Sum_probs=41.0
Q ss_pred cCCCccEEEccCCCCCCch--hhhc-CCccCCEeeccCC--cCccCCCCcccc--CCCCCCEEecccCCCC
Q psy8923 19 TIGLTEHLSIVNNNLEKLF--GELT-ELQCLRTLNLRYN--KIKNSGIPVDLF--HLEDLTTLDLSHNNIK 82 (273)
Q Consensus 19 ~l~~l~~L~l~~N~l~~lp--~~~~-~l~~L~~L~l~~N--~l~~~~ip~~~~--~l~~L~~L~Ls~N~l~ 82 (273)
+.+.+..+.|++|+|..|. .++. .-++|..|+|++| .+.. -+ .+. ...-|+.|-|-+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~-el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ES-ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hh-hhhhhcCCCHHHeeecCCccc
Confidence 3457777889999888764 3333 3588999999998 4443 22 233 3345778888888776
No 101
>PLN00162 transport protein sec23; Provisional
Probab=62.77 E-value=8.8 Score=37.61 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=34.3
Q ss_pred eeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCC
Q psy8923 162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGP 212 (273)
Q Consensus 162 ~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~ 212 (273)
.|+|+..+-. . .-..|.++..++.++.+++||++..+++|.|.
T Consensus 620 ~P~L~sy~~~------~--~P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~ 662 (761)
T PLN00162 620 QPTLISYSFN------G--PPEPVLLDVASIAADRILLLDSYFSVVIFHGS 662 (761)
T ss_pred CCeEEEecCC------C--CCcceecchhhccCCceEEEeCCCEEEEEecC
Confidence 4678877643 1 13357789999999999999999999999995
No 102
>PLN00162 transport protein sec23; Provisional
Probab=42.68 E-value=21 Score=35.13 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=16.3
Q ss_pred eEEEEeCCceEEEEeCCC
Q psy8923 240 FVFLLDAGLKLFIWNGPK 257 (273)
Q Consensus 240 ~v~~ld~~~~~~~w~G~~ 257 (273)
-|+|||++..|+||.|+.
T Consensus 646 ~ilLLD~~f~vvi~~G~~ 663 (761)
T PLN00162 646 RILLLDSYFSVVIFHGST 663 (761)
T ss_pred ceEEEeCCCEEEEEecCc
Confidence 499999999999999963
No 103
>KOG1947|consensus
Probab=40.35 E-value=14 Score=33.33 Aligned_cols=61 Identities=20% Similarity=0.168 Sum_probs=34.5
Q ss_pred CCccEEEccCCC-CCCch-hhhc-CCccCCEeeccCCc-CccCCCCccccCCCCCCEEecccCCC
Q psy8923 21 GLTEHLSIVNNN-LEKLF-GELT-ELQCLRTLNLRYNK-IKNSGIPVDLFHLEDLTTLDLSHNNI 81 (273)
Q Consensus 21 ~~l~~L~l~~N~-l~~lp-~~~~-~l~~L~~L~l~~N~-l~~~~ip~~~~~l~~L~~L~Ls~N~l 81 (273)
.+|++|+|+... ++..- ..+. .+++|+.|.+.++. ++...+-.-...+++|+.|+|++...
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 355667777765 55432 2222 36777777766555 44311222223677788888886543
No 104
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.73 E-value=26 Score=17.61 Aligned_cols=13 Identities=38% Similarity=0.414 Sum_probs=9.7
Q ss_pred CCCCCEEecccCC
Q psy8923 68 LEDLTTLDLSHNN 80 (273)
Q Consensus 68 l~~L~~L~Ls~N~ 80 (273)
+++|+.|+|++..
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678888888764
No 105
>KOG3763|consensus
Probab=34.04 E-value=22 Score=33.05 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=27.8
Q ss_pred CCccCCEeeccCCcCccCCCCc--ccc-CCCCCCEEecccC
Q psy8923 42 ELQCLRTLNLRYNKIKNSGIPV--DLF-HLEDLTTLDLSHN 79 (273)
Q Consensus 42 ~l~~L~~L~l~~N~l~~~~ip~--~~~-~l~~L~~L~Ls~N 79 (273)
+.+.+..+.|++|+|.. +.. ++. ..+.|..|+||+|
T Consensus 216 n~p~i~sl~lsnNrL~~--Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH--LDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhc--hhhhhHHHHhcchhheeecccc
Confidence 45778889999999986 542 222 4588999999999
No 106
>KOG3864|consensus
Probab=30.55 E-value=16 Score=29.56 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=40.2
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCC
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~ 80 (273)
.++.+|.++..|...- ..+.++++++.|.+.++.--..---+.+. -.++|+.|+||.|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 3467899999999875 77888888888877765422100011233 34799999999764
No 107
>KOG4308|consensus
Probab=29.20 E-value=5.3 Score=36.81 Aligned_cols=61 Identities=33% Similarity=0.335 Sum_probs=25.6
Q ss_pred CccEEEccCCCCCC-----chhhhcCCcc-CCEeeccCCcCccC---CCCccccCC-CCCCEEecccCCCC
Q psy8923 22 LTEHLSIVNNNLEK-----LFGELTELQC-LRTLNLRYNKIKNS---GIPVDLFHL-EDLTTLDLSHNNIK 82 (273)
Q Consensus 22 ~l~~L~l~~N~l~~-----lp~~~~~l~~-L~~L~l~~N~l~~~---~ip~~~~~l-~~L~~L~Ls~N~l~ 82 (273)
++++|.|+++.++. +-..+...+. +..|+++.|++... .+.+.+..+ ..++.+++++|.|+
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSIT 275 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence 34445555555553 1123333333 44455555555430 011222233 34455555555554
No 108
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=25.11 E-value=51 Score=27.73 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEeCCCcchHhHHhHHHHhhhC
Q psy8923 251 FIWNGPKAKNTFKSKTRLLAEKI 273 (273)
Q Consensus 251 ~~w~G~~a~~~~~~~~~~~~~~~ 273 (273)
-||+|...+.-.|..|+.+|+.|
T Consensus 260 vvwlgt~~~pvd~~~a~~la~si 282 (297)
T PF07174_consen 260 VVWLGTANNPVDKGAAKALAESI 282 (297)
T ss_pred EEEecCCCCCCCHHHHHHHHhhc
Confidence 37999999999999999999865
No 109
>PF11330 DUF3132: Protein of unknown function (DUF3132); InterPro: IPR021479 This entry is represented by the Citrus psorosis virus, 54kDa protein; it is a family of uncharacterised viral proteins.
Probab=24.71 E-value=68 Score=21.91 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=17.5
Q ss_pred ceEEEEeCCceEEEEeCCCcch
Q psy8923 239 TFVFLLDAGLKLFIWNGPKAKN 260 (273)
Q Consensus 239 ~~v~~ld~~~~~~~w~G~~a~~ 260 (273)
.-|||||...|=-+||-...=.
T Consensus 88 evvmildsrdegrmwikddvwa 109 (124)
T PF11330_consen 88 EVVMILDSRDEGRMWIKDDVWA 109 (124)
T ss_pred cEEEEEeccccCceeeechhHH
Confidence 3599999999999999655433
No 110
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.26 E-value=65 Score=24.51 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=10.6
Q ss_pred CCceEEEEeCCCc
Q psy8923 246 AGLKLFIWNGPKA 258 (273)
Q Consensus 246 ~~~~~~~w~G~~a 258 (273)
.+.+++||||++.
T Consensus 75 ~~e~i~VwVpkd~ 87 (161)
T COG5353 75 KGEEIIVWVPKDD 87 (161)
T ss_pred CCcEEEEEecCCC
Confidence 3579999999876
No 111
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.11 E-value=85 Score=22.87 Aligned_cols=25 Identities=8% Similarity=-0.053 Sum_probs=14.8
Q ss_pred EeCCceEEEEeCCC-cchHhHHhHHH
Q psy8923 244 LDAGLKLFIWNGPK-AKNTFKSKTRL 268 (273)
Q Consensus 244 ld~~~~~~~w~G~~-a~~~~~~~~~~ 268 (273)
++.-..|+||+|.+ --+....+|.+
T Consensus 64 v~~~~~v~v~iG~g~~vE~~~~eA~~ 89 (126)
T TIGR00293 64 VKDTDKVLVSIGSGYYVEKDAEEAIE 89 (126)
T ss_pred eCCCCEEEEEcCCCEEEEecHHHHHH
Confidence 44557888899877 33344444443
Done!