Query psy8923
Match_columns 273
No_of_seqs 276 out of 2863
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 22:55:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j72_A Macrophage capping prot 100.0 1.2E-37 4.1E-42 271.0 13.4 222 40-272 15-314 (347)
2 3fg6_A Adseverin, scinderin; C 100.0 2E-37 7E-42 270.2 12.7 218 44-273 52-333 (371)
3 3fg7_A Villin-1; actin binding 100.0 7.1E-38 2.4E-42 274.7 4.7 183 83-272 102-344 (398)
4 2fh1_A Gelsolin; calcium, cont 100.0 4.3E-36 1.5E-40 260.4 13.6 182 84-272 48-291 (344)
5 1d0n_A Horse plasma gelsolin; 100.0 1E-35 3.5E-40 280.2 12.6 224 40-272 9-311 (729)
6 1d0n_A Horse plasma gelsolin; 100.0 3E-34 1E-38 270.2 11.0 182 84-272 433-676 (729)
7 1svq_A Severin; actin-binding; 99.8 1.3E-18 4.5E-23 126.3 7.4 90 151-248 1-90 (114)
8 1j72_A Macrophage capping prot 99.7 1.1E-17 3.9E-22 145.1 8.1 161 84-250 169-336 (347)
9 1kcq_A Gelsolin, brevin, ADF, 99.7 4.5E-17 1.6E-21 116.4 9.4 82 162-250 2-83 (104)
10 3tu5_B Gelsolin, protein cordo 99.7 3.9E-18 1.3E-22 142.7 1.1 168 38-214 27-198 (297)
11 3fg7_A Villin-1; actin binding 99.6 1E-14 3.4E-19 128.0 9.9 158 80-252 210-370 (398)
12 3fg6_A Adseverin, scinderin; C 99.5 1.9E-14 6.4E-19 125.4 7.7 151 86-252 204-358 (371)
13 2fh1_A Gelsolin; calcium, cont 99.5 5.6E-14 1.9E-18 121.6 6.7 154 83-251 159-316 (344)
14 3e6j_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 101.2 11.0 78 3-90 54-133 (229)
15 1t44_G Chimera of gelsolin dom 99.3 5.5E-13 1.9E-17 100.3 0.9 122 39-163 10-135 (147)
16 2r9u_A Variable lymphocyte rec 99.3 1.9E-11 6.4E-16 95.6 8.9 66 21-88 33-100 (174)
17 2v9t_B SLIT homolog 2 protein 99.3 1.9E-11 6.7E-16 99.1 9.2 62 22-85 57-120 (220)
18 3rgz_A Protein brassinosteroid 99.2 6E-12 2E-16 120.2 7.0 80 2-90 621-702 (768)
19 2wfh_A SLIT homolog 2 protein 99.2 2.9E-11 9.8E-16 96.1 9.1 63 23-87 56-120 (193)
20 2je0_A Acidic leucine-rich nuc 99.2 1.6E-11 5.4E-16 93.2 6.8 73 3-85 32-104 (149)
21 3rgz_A Protein brassinosteroid 99.2 9.6E-12 3.3E-16 118.8 6.5 78 1-87 644-723 (768)
22 2r9u_A Variable lymphocyte rec 99.2 6E-11 2E-15 92.7 9.9 65 22-88 58-124 (174)
23 3g39_A Variable lymphocyte rec 99.2 5.5E-11 1.9E-15 92.5 8.9 67 21-89 30-98 (170)
24 2ff3_A Gelsolin; protein-prote 99.2 2.9E-12 9.8E-17 96.2 1.1 115 38-155 31-149 (150)
25 3e6j_A Variable lymphocyte rec 99.2 1.1E-10 3.8E-15 95.2 10.7 68 21-90 40-109 (229)
26 2ifg_A High affinity nerve gro 99.2 3.1E-11 1E-15 104.4 7.7 77 5-91 24-102 (347)
27 3m19_A Variable lymphocyte rec 99.2 1.3E-10 4.6E-15 95.9 10.8 65 22-88 60-126 (251)
28 3cip_G Gelsolin; actin, dictyo 99.2 3.3E-12 1.1E-16 93.8 0.8 112 39-153 13-128 (128)
29 2vik_A Villin 14T; actin-bindi 99.2 2.5E-12 8.5E-17 94.2 -0.4 70 83-153 56-125 (126)
30 3m19_A Variable lymphocyte rec 99.2 1.2E-10 4E-15 96.3 9.6 84 2-87 48-149 (251)
31 2ell_A Acidic leucine-rich nuc 99.2 3.6E-11 1.2E-15 93.1 6.0 73 3-85 39-111 (168)
32 3g39_A Variable lymphocyte rec 99.1 1.5E-10 5.1E-15 90.0 8.9 74 3-86 44-119 (170)
33 2v70_A SLIT-2, SLIT homolog 2 99.1 1.2E-10 4.2E-15 94.4 8.8 62 22-84 82-144 (220)
34 1p9a_G Platelet glycoprotein I 99.1 1.9E-10 6.6E-15 97.2 10.2 63 22-86 78-141 (290)
35 4b8c_D Glucose-repressible alc 99.1 4.5E-11 1.5E-15 113.4 6.0 68 22-91 248-315 (727)
36 2o6s_A Variable lymphocyte rec 99.1 3E-10 1E-14 91.0 10.0 64 22-87 53-118 (208)
37 4fcg_A Uncharacterized protein 99.1 3E-10 1E-14 97.7 10.5 69 20-90 182-251 (328)
38 1dce_A Protein (RAB geranylger 99.1 1.2E-10 4.3E-15 107.3 8.5 65 23-90 465-531 (567)
39 2o6r_A Variable lymphocyte rec 99.1 2.4E-10 8.1E-15 89.2 8.9 63 22-86 29-93 (177)
40 4g8a_A TOLL-like receptor 4; l 99.1 1E-10 3.4E-15 108.5 7.8 79 10-90 38-121 (635)
41 1w8a_A SLIT protein; signaling 99.1 2.3E-10 7.8E-15 90.7 8.2 58 23-82 56-115 (192)
42 2v9t_B SLIT homolog 2 protein 99.1 4.3E-10 1.5E-14 91.1 9.8 69 21-90 32-101 (220)
43 2wfh_A SLIT homolog 2 protein 99.1 4.8E-10 1.6E-14 89.0 9.8 65 21-87 31-96 (193)
44 1w8a_A SLIT protein; signaling 99.1 1.8E-10 6.3E-15 91.3 6.7 76 9-85 50-143 (192)
45 1p9a_G Platelet glycoprotein I 99.1 3.9E-10 1.3E-14 95.3 8.6 66 22-89 125-192 (290)
46 1dce_A Protein (RAB geranylger 99.1 2.7E-10 9.3E-15 105.0 8.0 67 22-90 487-554 (567)
47 1ogq_A PGIP-2, polygalacturona 99.0 9.5E-11 3.3E-15 100.1 4.5 87 4-91 67-172 (313)
48 4fcg_A Uncharacterized protein 99.0 4.4E-10 1.5E-14 96.6 8.2 69 21-90 206-275 (328)
49 2v70_A SLIT-2, SLIT homolog 2 99.0 5E-10 1.7E-14 90.7 8.1 61 22-84 58-120 (220)
50 3rfs_A Internalin B, repeat mo 99.0 1.2E-09 4E-14 91.3 10.1 64 22-87 110-175 (272)
51 4b8c_D Glucose-repressible alc 99.0 2.1E-10 7E-15 108.9 5.9 84 4-89 238-337 (727)
52 2xot_A Amphoterin-induced prot 99.0 4.9E-10 1.7E-14 97.6 7.7 66 22-88 89-155 (361)
53 2o6q_A Variable lymphocyte rec 99.0 1.4E-09 4.7E-14 90.8 10.0 64 22-87 110-175 (270)
54 1ozn_A Reticulon 4 receptor; N 99.0 9.9E-10 3.4E-14 92.2 9.0 83 6-90 98-199 (285)
55 3v47_A TOLL-like receptor 5B a 99.0 8.2E-10 2.8E-14 98.7 8.4 84 3-87 289-389 (455)
56 4g8a_A TOLL-like receptor 4; l 99.0 9.6E-10 3.3E-14 101.9 8.6 89 22-111 495-585 (635)
57 2ell_A Acidic leucine-rich nuc 99.0 6.3E-10 2.2E-14 86.0 6.1 64 21-86 71-137 (168)
58 2o6q_A Variable lymphocyte rec 99.0 2.2E-09 7.6E-14 89.5 9.7 64 22-87 62-127 (270)
59 2xot_A Amphoterin-induced prot 99.0 9E-10 3.1E-14 95.9 7.4 83 3-87 78-181 (361)
60 1a9n_A U2A', U2A'; complex (nu 99.0 6.9E-10 2.4E-14 86.6 6.0 62 22-86 43-105 (176)
61 3vq2_A TLR4, TOLL-like recepto 99.0 9E-10 3.1E-14 102.1 7.4 65 22-87 474-539 (606)
62 4eco_A Uncharacterized protein 98.9 3.6E-10 1.2E-14 105.7 4.4 80 2-91 196-298 (636)
63 1ogq_A PGIP-2, polygalacturona 98.9 6.4E-10 2.2E-14 94.9 5.5 75 3-88 188-264 (313)
64 1ozn_A Reticulon 4 receptor; N 98.9 4.4E-09 1.5E-13 88.3 10.2 83 3-87 70-171 (285)
65 4eco_A Uncharacterized protein 98.9 4.1E-10 1.4E-14 105.3 4.2 60 32-92 194-273 (636)
66 4ecn_A Leucine-rich repeat pro 98.9 1.2E-09 4E-14 105.3 7.2 66 22-90 549-616 (876)
67 2o6s_A Variable lymphocyte rec 98.9 3.7E-09 1.3E-13 84.6 9.1 84 3-88 42-143 (208)
68 2o6r_A Variable lymphocyte rec 98.9 2.9E-09 1E-13 83.0 8.2 76 4-89 43-120 (177)
69 2ifg_A High affinity nerve gro 98.9 1.7E-09 5.8E-14 93.4 6.7 80 3-92 46-128 (347)
70 2z62_A TOLL-like receptor 4, v 98.9 4.7E-09 1.6E-13 87.7 9.2 64 22-86 53-117 (276)
71 4glp_A Monocyte differentiatio 98.9 1.1E-09 3.7E-14 93.2 5.4 64 22-86 198-268 (310)
72 2je0_A Acidic leucine-rich nuc 98.9 1.3E-09 4.4E-14 82.5 5.0 66 21-89 17-85 (149)
73 1xku_A Decorin; proteoglycan, 98.9 2.5E-09 8.4E-14 91.7 7.3 86 4-90 162-261 (330)
74 3vq2_A TLR4, TOLL-like recepto 98.9 3.3E-09 1.1E-13 98.2 8.5 67 22-90 81-151 (606)
75 3oja_A Leucine-rich immune mol 98.9 9.8E-10 3.3E-14 99.5 4.7 77 3-90 134-212 (487)
76 3zyj_A Leucine-rich repeat-con 98.9 3E-09 1E-13 95.0 7.7 81 8-89 180-275 (440)
77 3oja_A Leucine-rich immune mol 98.9 1.2E-09 4E-14 99.0 5.1 77 2-89 157-234 (487)
78 3v47_A TOLL-like receptor 5B a 98.9 3.1E-09 1.1E-13 95.0 7.8 90 2-93 312-422 (455)
79 1a9n_A U2A', U2A'; complex (nu 98.9 1.1E-09 3.8E-14 85.4 4.3 65 21-87 64-131 (176)
80 1kcq_A Gelsolin, brevin, ADF, 98.9 1.6E-09 5.6E-14 77.0 4.7 39 235-273 25-63 (104)
81 3rfs_A Internalin B, repeat mo 98.9 6.7E-09 2.3E-13 86.7 9.1 85 2-88 98-200 (272)
82 1xku_A Decorin; proteoglycan, 98.9 2.7E-09 9.3E-14 91.4 6.8 66 22-89 217-283 (330)
83 2z66_A Variable lymphocyte rec 98.9 5.2E-09 1.8E-13 88.7 8.4 64 22-86 151-216 (306)
84 4ecn_A Leucine-rich repeat pro 98.9 9.4E-10 3.2E-14 105.9 4.2 79 5-92 440-541 (876)
85 1ziw_A TOLL-like receptor 3; i 98.9 7.3E-09 2.5E-13 97.3 10.1 85 3-89 470-580 (680)
86 3o53_A Protein LRIM1, AGAP0063 98.9 1.3E-09 4.6E-14 93.0 4.6 65 22-89 145-211 (317)
87 3zyi_A Leucine-rich repeat-con 98.9 4.5E-09 1.5E-13 94.1 7.9 68 21-89 218-286 (452)
88 3o53_A Protein LRIM1, AGAP0063 98.9 1.9E-09 6.5E-14 92.1 5.2 67 21-90 169-235 (317)
89 2ft3_A Biglycan; proteoglycan, 98.9 3.7E-09 1.3E-13 90.8 7.0 67 22-89 194-261 (332)
90 4ezg_A Putative uncharacterize 98.8 3E-09 1E-13 84.4 5.9 67 21-89 66-133 (197)
91 1wwl_A Monocyte differentiatio 98.8 6.1E-09 2.1E-13 88.7 8.1 72 3-82 163-241 (312)
92 2z62_A TOLL-like receptor 4, v 98.8 6.5E-09 2.2E-13 86.8 8.0 85 5-91 44-148 (276)
93 3zyi_A Leucine-rich repeat-con 98.8 4.1E-09 1.4E-13 94.4 7.0 62 23-86 101-164 (452)
94 2z7x_B TOLL-like receptor 1, v 98.8 1.4E-08 4.9E-13 92.3 10.4 77 2-87 337-418 (520)
95 3oja_B Anopheles plasmodium-re 98.8 7.5E-09 2.6E-13 96.0 8.3 62 22-85 100-163 (597)
96 4ezg_A Putative uncharacterize 98.8 5E-09 1.7E-13 83.2 6.1 64 21-85 88-153 (197)
97 1ds9_A Outer arm dynein; leuci 98.8 1.6E-10 5.5E-15 92.0 -2.8 67 8-85 43-109 (198)
98 2z63_A TOLL-like receptor 4, v 98.8 9.1E-09 3.1E-13 94.4 8.4 66 22-89 77-146 (570)
99 1svq_A Severin; actin-binding; 98.8 2.6E-09 8.9E-14 77.1 3.8 40 234-273 34-73 (114)
100 2z7x_B TOLL-like receptor 1, v 98.8 5.2E-09 1.8E-13 95.2 6.4 55 24-82 48-103 (520)
101 2id5_A Lingo-1, leucine rich r 98.8 8E-09 2.7E-13 93.0 7.1 60 22-82 81-141 (477)
102 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1E-08 3.6E-13 94.2 7.6 64 22-86 53-117 (562)
103 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1.6E-08 5.5E-13 93.0 8.8 85 2-89 366-470 (562)
104 3zyj_A Leucine-rich repeat-con 98.8 1.1E-08 3.6E-13 91.4 7.4 63 22-86 89-153 (440)
105 3o6n_A APL1; leucine-rich repe 98.8 1.5E-08 5.2E-13 88.8 8.3 63 22-86 94-158 (390)
106 1wwl_A Monocyte differentiatio 98.8 8.6E-09 2.9E-13 87.8 6.4 72 2-82 108-186 (312)
107 1ziw_A TOLL-like receptor 3; i 98.8 1.4E-08 4.9E-13 95.3 8.4 82 2-85 38-137 (680)
108 2xwt_C Thyrotropin receptor; s 98.8 5.5E-09 1.9E-13 85.4 4.8 63 22-86 32-98 (239)
109 2z80_A TOLL-like receptor 2, v 98.8 9E-09 3.1E-13 89.1 6.3 64 22-86 53-117 (353)
110 3t6q_A CD180 antigen; protein- 98.7 2.4E-08 8.1E-13 92.5 9.3 68 22-90 450-522 (606)
111 2z81_A CD282 antigen, TOLL-lik 98.7 1.5E-08 5.1E-13 92.7 7.6 59 22-80 75-134 (549)
112 1h6t_A Internalin B; cell adhe 98.7 2.6E-08 8.9E-13 84.0 8.5 61 21-85 90-150 (291)
113 1xeu_A Internalin C; cellular 98.7 2.1E-08 7.2E-13 83.3 7.8 59 22-85 86-144 (263)
114 2ft3_A Biglycan; proteoglycan, 98.7 1.9E-08 6.6E-13 86.2 7.3 67 22-89 55-122 (332)
115 2z63_A TOLL-like receptor 4, v 98.7 2E-08 6.9E-13 92.1 7.8 88 3-90 66-171 (570)
116 1h6u_A Internalin H; cell adhe 98.7 3E-08 1E-12 84.4 8.3 62 21-86 85-146 (308)
117 1h6t_A Internalin B; cell adhe 98.7 3E-08 1E-12 83.6 8.3 74 9-86 86-173 (291)
118 2z66_A Variable lymphocyte rec 98.7 1.9E-08 6.4E-13 85.2 6.6 70 21-90 126-197 (306)
119 3o6n_A APL1; leucine-rich repe 98.7 6.6E-09 2.3E-13 91.1 3.8 69 21-91 248-317 (390)
120 3oja_B Anopheles plasmodium-re 98.7 6.6E-09 2.3E-13 96.4 3.8 69 21-91 254-323 (597)
121 1m9s_A Internalin B; cell inva 98.7 3.9E-08 1.3E-12 91.2 8.7 60 22-85 110-169 (605)
122 2z80_A TOLL-like receptor 2, v 98.7 2.5E-08 8.7E-13 86.2 6.9 71 6-86 69-141 (353)
123 2xwt_C Thyrotropin receptor; s 98.7 1.1E-08 3.8E-13 83.6 4.4 72 5-86 47-122 (239)
124 3t6q_A CD180 antigen; protein- 98.7 2E-08 6.9E-13 92.9 6.5 61 22-84 82-144 (606)
125 2id5_A Lingo-1, leucine rich r 98.7 2.6E-08 9E-13 89.6 7.1 68 21-89 248-316 (477)
126 1h6u_A Internalin H; cell adhe 98.7 5.2E-08 1.8E-12 82.8 8.5 74 9-86 81-168 (308)
127 3j0a_A TOLL-like receptor 5; m 98.7 2.3E-08 7.9E-13 96.4 6.8 61 22-83 74-137 (844)
128 2z81_A CD282 antigen, TOLL-lik 98.7 5.7E-08 2E-12 88.8 9.0 77 4-86 401-490 (549)
129 1xeu_A Internalin C; cellular 98.7 3E-08 1E-12 82.5 6.3 62 21-86 41-102 (263)
130 3cvr_A Invasion plasmid antige 98.7 4E-08 1.4E-12 90.4 7.7 58 21-86 140-197 (571)
131 4glp_A Monocyte differentiatio 98.7 3E-08 1E-12 84.3 6.3 62 21-86 224-289 (310)
132 1m9s_A Internalin B; cell inva 98.6 7.2E-08 2.4E-12 89.5 8.6 75 8-86 104-192 (605)
133 4ay9_X Follicle-stimulating ho 98.6 2.6E-08 8.9E-13 86.2 4.8 66 22-89 155-222 (350)
134 3bz5_A Internalin-J, INLJ; leu 98.6 5.3E-08 1.8E-12 87.4 6.7 58 22-85 86-143 (457)
135 3bz5_A Internalin-J, INLJ; leu 98.6 1.2E-07 4.1E-12 85.1 8.5 58 22-85 65-122 (457)
136 3j0a_A TOLL-like receptor 5; m 98.6 9.7E-08 3.3E-12 92.0 8.4 85 6-91 66-171 (844)
137 4fmz_A Internalin; leucine ric 98.6 1E-07 3.6E-12 81.9 7.5 61 21-85 243-303 (347)
138 3cvr_A Invasion plasmid antige 98.6 4.4E-08 1.5E-12 90.2 5.3 62 23-89 182-251 (571)
139 1ds9_A Outer arm dynein; leuci 98.5 1E-09 3.5E-14 87.2 -5.4 63 21-86 70-132 (198)
140 4ay9_X Follicle-stimulating ho 98.5 6.5E-08 2.2E-12 83.7 4.9 76 13-89 19-100 (350)
141 1jl5_A Outer protein YOPM; leu 98.5 2.4E-07 8.2E-12 83.1 8.4 52 5-58 146-209 (454)
142 3rw6_A Nuclear RNA export fact 98.5 1.3E-07 4.5E-12 78.5 5.6 63 20-85 169-237 (267)
143 1jl5_A Outer protein YOPM; leu 98.4 4.1E-07 1.4E-11 81.5 8.3 76 5-87 188-275 (454)
144 4fmz_A Internalin; leucine ric 98.4 4.4E-07 1.5E-11 78.0 8.1 62 21-86 66-127 (347)
145 1o6v_A Internalin A; bacterial 98.4 4.9E-07 1.7E-11 81.1 8.1 60 22-85 69-128 (466)
146 3g06_A SSPH2 (leucine-rich rep 98.4 4.2E-07 1.4E-11 84.6 7.5 38 44-86 221-258 (622)
147 3g06_A SSPH2 (leucine-rich rep 98.4 2.6E-07 9E-12 85.9 5.7 62 21-90 221-282 (622)
148 1o6v_A Internalin A; bacterial 98.4 4.5E-07 1.5E-11 81.4 6.5 62 21-86 90-151 (466)
149 2ast_B S-phase kinase-associat 98.2 3.5E-07 1.2E-11 78.2 1.3 59 22-80 143-206 (336)
150 3goz_A Leucine-rich repeat-con 98.2 3.9E-07 1.3E-11 79.1 1.1 72 2-82 11-93 (362)
151 2ca6_A RAN GTPase-activating p 98.1 8.8E-07 3E-11 77.4 2.0 58 24-82 190-257 (386)
152 2ast_B S-phase kinase-associat 98.1 1.3E-06 4.6E-11 74.5 2.7 68 21-89 93-165 (336)
153 3sb4_A Hypothetical leucine ri 98.0 8.2E-06 2.8E-10 69.7 5.6 67 20-90 225-294 (329)
154 3rfe_A Platelet glycoprotein I 97.9 1.1E-05 3.7E-10 59.5 5.4 55 24-82 11-68 (130)
155 2ca6_A RAN GTPase-activating p 97.9 5.5E-06 1.9E-10 72.3 3.4 70 21-90 159-242 (386)
156 3sb4_A Hypothetical leucine ri 97.8 1.4E-05 4.9E-10 68.2 4.6 65 22-90 251-318 (329)
157 3goz_A Leucine-rich repeat-con 97.7 1.1E-05 3.7E-10 69.9 2.4 63 22-85 52-125 (362)
158 1z7x_W Ribonuclease inhibitor; 97.6 3E-05 1E-09 68.9 3.0 61 22-83 200-270 (461)
159 3un9_A NLR family member X1; l 97.6 2.6E-05 8.9E-10 67.9 2.3 62 21-82 155-224 (372)
160 1z7x_W Ribonuclease inhibitor; 97.5 2.2E-05 7.7E-10 69.8 1.6 69 21-90 313-396 (461)
161 3un9_A NLR family member X1; l 97.5 3.8E-05 1.3E-09 66.9 2.8 63 21-83 126-197 (372)
162 3ogk_B Coronatine-insensitive 97.5 2.8E-05 9.7E-10 71.4 1.7 62 21-82 436-501 (592)
163 3rw6_A Nuclear RNA export fact 97.4 9.7E-05 3.3E-09 61.2 3.5 54 20-75 195-257 (267)
164 1io0_A Tropomodulin; LRR prote 97.3 0.00011 3.9E-09 57.3 2.9 63 21-83 36-107 (185)
165 3rfe_A Platelet glycoprotein I 97.3 0.00031 1.1E-08 51.6 4.9 37 21-57 31-68 (130)
166 4fdw_A Leucine rich hypothetic 97.2 0.0005 1.7E-08 60.4 6.5 56 22-82 227-284 (401)
167 1io0_A Tropomodulin; LRR prote 97.1 0.00021 7.1E-09 55.8 2.9 61 22-82 66-136 (185)
168 2ra8_A Uncharacterized protein 96.9 0.00015 5.3E-09 62.8 0.3 64 19-83 217-293 (362)
169 3ogk_B Coronatine-insensitive 96.8 0.00026 8.7E-09 65.0 1.2 66 21-86 164-237 (592)
170 4fdw_A Leucine rich hypothetic 96.8 0.0016 5.5E-08 57.1 5.6 65 22-90 272-343 (401)
171 2p1m_B Transport inhibitor res 96.6 0.00046 1.6E-08 63.2 1.1 60 21-82 432-494 (594)
172 3e4g_A ATP synthase subunit S, 96.0 0.003 1E-07 48.7 2.6 60 22-82 62-128 (176)
173 4h09_A Hypothetical leucine ri 95.8 0.0084 2.9E-07 51.8 4.8 65 22-90 264-330 (379)
174 2p1m_B Transport inhibitor res 95.8 0.0029 9.9E-08 57.9 1.7 61 20-82 396-469 (594)
175 4gt6_A Cell surface protein; l 95.6 0.028 9.7E-07 48.8 7.5 64 22-90 289-354 (394)
176 4h09_A Hypothetical leucine ri 95.6 0.019 6.6E-07 49.4 6.1 66 22-91 241-308 (379)
177 3tu5_B Gelsolin, protein cordo 95.3 0.033 1.1E-06 46.5 6.3 52 164-224 36-97 (297)
178 4gt6_A Cell surface protein; l 95.3 0.035 1.2E-06 48.2 6.8 55 22-80 312-368 (394)
179 1pgv_A TMD-1, tropomodulin TMD 95.2 0.011 3.9E-07 46.3 3.0 61 22-82 42-111 (197)
180 4fs7_A Uncharacterized protein 95.2 0.031 1.1E-06 48.5 6.1 64 22-90 298-363 (394)
181 2ra8_A Uncharacterized protein 95.1 0.0067 2.3E-07 52.4 1.7 63 20-82 192-265 (362)
182 4fs7_A Uncharacterized protein 94.5 0.032 1.1E-06 48.5 4.5 54 22-79 321-376 (394)
183 3e4g_A ATP synthase subunit S, 94.2 0.02 7E-07 44.0 2.3 60 20-80 84-150 (176)
184 2vik_A Villin 14T; actin-bindi 93.5 0.091 3.1E-06 37.9 4.5 52 164-224 19-79 (126)
185 1pgv_A TMD-1, tropomodulin TMD 92.7 0.049 1.7E-06 42.7 2.2 60 22-81 71-138 (197)
186 3cip_G Gelsolin; actin, dictyo 92.0 0.09 3.1E-06 38.1 2.7 66 163-272 20-86 (128)
187 2ff3_A Gelsolin; protein-prote 91.6 0.1 3.6E-06 38.8 2.7 66 163-272 39-105 (150)
188 1t44_G Chimera of gelsolin dom 90.6 0.15 5.1E-06 37.9 2.7 66 163-272 17-83 (147)
189 3eh1_A Protein transport prote 88.9 0.26 8.9E-06 46.6 3.5 26 240-265 640-665 (751)
190 1pcx_A Protein transport prote 87.4 0.46 1.6E-05 45.3 4.3 27 239-265 681-707 (810)
191 3eh1_A Protein transport prote 87.1 0.52 1.8E-05 44.5 4.4 36 186-221 630-665 (751)
192 3eh2_A Protein transport prote 86.3 0.45 1.6E-05 45.1 3.5 26 240-265 651-676 (766)
193 1pcx_A Protein transport prote 86.3 0.76 2.6E-05 43.9 5.1 37 184-220 670-706 (810)
194 3efo_B SEC24 related gene fami 86.0 0.57 2E-05 44.4 4.0 26 240-265 655-680 (770)
195 1m2v_B SEC24, protein transpor 85.8 0.59 2E-05 45.2 4.0 25 239-263 797-821 (926)
196 3eh2_A Protein transport prote 85.7 0.68 2.3E-05 43.9 4.4 55 162-220 620-675 (766)
197 1m2v_B SEC24, protein transpor 85.2 0.84 2.9E-05 44.2 4.8 34 184-217 786-819 (926)
198 3efo_B SEC24 related gene fami 85.1 0.73 2.5E-05 43.7 4.3 56 162-220 624-679 (770)
199 2nut_A Protein transport prote 82.5 1.2 4E-05 42.4 4.5 45 162-214 624-668 (769)
200 1m2o_A SEC23, protein transpor 82.0 1.1 3.9E-05 42.4 4.2 45 162-214 626-670 (768)
201 1m2o_A SEC23, protein transpor 77.1 0.91 3.1E-05 43.1 1.8 20 240-259 652-671 (768)
202 2nut_A Protein transport prote 75.8 1.1 3.9E-05 42.4 2.2 20 240-259 650-669 (769)
203 2lz0_A Uncharacterized protein 69.9 5.5 0.00019 27.1 4.0 48 30-80 5-54 (100)
204 3uma_A Hypothetical peroxiredo 54.4 8.8 0.0003 29.1 3.0 34 240-273 151-184 (184)
205 3mng_A Peroxiredoxin-5, mitoch 51.8 11 0.00037 28.3 3.1 34 240-273 140-173 (173)
206 2xhf_A Peroxiredoxin 5; oxidor 38.1 38 0.0013 25.3 4.2 32 240-271 136-167 (171)
207 1fxk_C Protein (prefoldin); ar 33.7 17 0.00059 25.8 1.6 24 246-269 68-92 (133)
208 3fuy_A HFX_CASS1, putative int 31.1 38 0.0013 23.6 2.9 23 250-272 111-133 (179)
209 2pwj_A Mitochondrial peroxired 30.4 32 0.0011 25.4 2.7 33 240-272 138-170 (171)
210 2zdi_C Prefoldin subunit alpha 27.7 24 0.00082 25.8 1.5 23 247-269 79-102 (151)
211 1tp9_A Peroxiredoxin, PRX D (t 25.8 42 0.0014 24.3 2.6 17 240-256 130-146 (162)
212 3drn_A Peroxiredoxin, bacterio 25.5 68 0.0023 22.9 3.8 30 240-269 113-143 (161)
No 1
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=100.00 E-value=1.2e-37 Score=270.95 Aligned_cols=222 Identities=25% Similarity=0.320 Sum_probs=180.4
Q ss_pred hcCCccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecccCCCCCccchhhhhhhcccccchhccccccccchhhhhhh
Q psy8923 40 LTELQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAA 117 (273)
Q Consensus 40 ~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~ 117 (273)
.++-+.|+...+.+..+.. +|+... .+ ..=.++-|.--.-.. ..||.|+|.+++.++.+++++.+.+|++.+++
T Consensus 15 ~~~~~g~~iWrie~~~~~~--vp~~~~G~Fy~gd~Yivl~t~~~~~--~~i~~W~G~~ss~de~~~aa~~t~~ld~~lgg 90 (347)
T 1j72_A 15 SVQDPGLHVWRVEKLKPVP--VAQENQGVFFSGDSYLVLHNGPEEV--SHLHLWIGQQSSRDEQGACAVLAVQLDDYLGG 90 (347)
T ss_dssp TTSSSEEEEEEECSSSEEE--CCTTTTTEEETTSEEEEEEECSSSC--EEEEEEECTTSCHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCeEEEEEcCCEEEE--CCHHHcCeecCCCEEEEEEeecCCC--eEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 3445677777777766665 775322 11 111122222111111 67999999999999999999999999999999
Q ss_pred hhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCc-ceeeEEEEecCcccCCCCceEEEEecCCCCCCCCCC
Q psy8923 118 ECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTV-YTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRF 196 (273)
Q Consensus 118 ~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~-~~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~d 196 (273)
.++|+|+.||+||++|+++|++++++++|+ ..+++.++.+.. ..++||||+|+ +++++.|||++++|||++|
T Consensus 91 ~~vq~R~~Qg~Es~~Fl~~F~~~~~i~~Gg-~~sgf~~~~~~~~~~~rL~~v~G~------~~v~~~eV~~~~~sLns~d 163 (347)
T 1j72_A 91 RPVQHREVQGNESDLFMSYFPRGLKYQEGG-VESGFKHVVPNEVVVQRLYQVKGK------KNIRATERALNWDSFNTGD 163 (347)
T ss_dssp CSEEEEEETTSCCHHHHTTCSSCCEEECSS-CCTTCCCCCCCCCEEEEEEEEECS------SSCEEEEECSSGGGCBTTS
T ss_pred CCcEEEeeCCCCCHHHHHhhCCCeEEeeCC-ccccccccccCCCCCcEEEEEECC------CceEEEEEeeeHHHcCCCc
Confidence 999999999999999999999999999999 889998887655 46799999998 6889999999999999999
Q ss_pred EEEEECCCeEEEEeCCCCCHHHHHHhhhhh----------------------cccccc--C---CC--------------
Q psy8923 197 VFLLDAGLKLFIWNGPKAKNTFVFLLDAGL----------------------KLFIWN--G---PK-------------- 235 (273)
Q Consensus 197 vfild~~~~~~vW~G~~s~~~e~~~~~~~~----------------------~~~fw~--~---~~-------------- 235 (273)
|||||+++.+|+|+|++|+.+||..|..+| +.+||. | .+
T Consensus 164 ~FIL~~~~~iy~W~G~~s~~~Er~~A~~~a~~i~~~~~~g~~~v~~v~EG~E~~~Fw~~LGg~~~~~~~~~~~d~~~~~~ 243 (347)
T 1j72_A 164 CFILDLGQNIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKPALKEGNPEEDLTADKA 243 (347)
T ss_dssp EEEEEETTEEEEEECTTCCHHHHHHHHHHHHHHHTTSCCSSCEEEEEETTCCCHHHHHHHCSCCCCBCSCCSSCCTTSSS
T ss_pred eEEEecCCEEEEEECCCCCHHHHHHHHHHHHHHHhhccCCCceEEEEeCCCCHHHHHHHhCCCcccccCCcchhhhhhhh
Confidence 999999999999999999999999876443 557777 2 00
Q ss_pred --------------------------------CCCceEEEEeCC--ceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923 236 --------------------------------AKNTFVFLLDAG--LKLFIWNGPKAKNTFKSKTRLLAEK 272 (273)
Q Consensus 236 --------------------------------~~~~~v~~ld~~--~~~~~w~G~~a~~~~~~~~~~~~~~ 272 (273)
..+++|||||++ .+||||+|++|+..||+.|+++|++
T Consensus 244 ~~~~~rLy~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~er~~A~~~A~~ 314 (347)
T 1j72_A 244 NAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEG 314 (347)
T ss_dssp SSCCCEEEEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cccCCEEEEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 011359999999 9999999999999999999999986
No 2
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=270.20 Aligned_cols=218 Identities=24% Similarity=0.238 Sum_probs=168.2
Q ss_pred ccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecccCCCCCccchhhhhhhcccccchhccccccccchhhhhhhhhhh
Q psy8923 44 QCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRT 121 (273)
Q Consensus 44 ~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~ 121 (273)
..|+...+.+..... +|+... .+ ..=.++-|.-- .....+|.|+|.+++.++.+.+++.+.+|++.+++.|+|
T Consensus 52 g~l~vWrIe~~~~~~--vp~~~~G~Fy~gD~YIvl~ty---~~~~~i~~W~G~~ss~de~g~aa~~~v~Ld~~lgg~~vq 126 (371)
T 3fg6_A 52 GKVEIWRVENNGRIQ--VDQNSYGEFYGGDCYIILYTY---PRGQIIYTWQGANATRDELTTSAFLTVQLDRSLGGQAVQ 126 (371)
T ss_dssp CEEEEEEECSSSEEE--CCGGGTTEECTTCEEEEEEEC---SSCEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred CcEEEEEEECCeeee--CChHHcCeEecCceEEEEEEe---cCCeEEEEeeCCCCChhHHHHHHHHHHHHHHHcCCCceE
Confidence 467777777777776 776432 11 11112222111 345679999999999999999999999999999999999
Q ss_pred cccccCCCchhhHhhccCC-cEEecCCcccccceecccCcceeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEE
Q psy8923 122 IREEQGDESEEFLSLFNTG-ISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLL 200 (273)
Q Consensus 122 ~~~~qg~e~~~fl~lf~~~-i~~l~g~~~~s~~~~~~~~~~~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfil 200 (273)
+|+.||+||++|+++|+++ +++++|+ ..++... .....+|||||+|+ ...++++.|||++++|||++|||||
T Consensus 127 ~R~~QG~Es~~Fls~Fkg~~~ii~~Gg-~~~~~~~--~~~~~~rL~~vrg~----~~~~vr~~EV~~~~ssLns~d~FIL 199 (371)
T 3fg6_A 127 IRVSQGKEPVHLLSLFKDKPLIIYKNG-TSKKGGQ--APAPPTRLFQVRRN----LASITRIVEVDVDANSLNSNDVFVL 199 (371)
T ss_dssp EEEETTCCCHHHHTTSCSSCEEEC-----------------CCEEEEEECC----SSSCCEEEEECSSGGGCBTTSEEEE
T ss_pred EEEecCCCcHHHHHHhCCceEEEEcCC-ccCCCcc--CCcCccEEEEEecc----CCCceEEEEecCCHHHccCCCeEEE
Confidence 9999999999999999998 8888988 5443222 12345799999998 3468999999999999999999999
Q ss_pred ECC-CeEEEEeCCCCCHHHHHHhhhhh---------------cccccc--C---CC------------------------
Q psy8923 201 DAG-LKLFIWNGPKAKNTFVFLLDAGL---------------KLFIWN--G---PK------------------------ 235 (273)
Q Consensus 201 d~~-~~~~vW~G~~s~~~e~~~~~~~~---------------~~~fw~--~---~~------------------------ 235 (273)
|++ +.+|+|+|++|+.+||.+|..+| +++||+ | +|
T Consensus 200 d~~~~~iyvW~G~~ss~~Er~~A~~~a~~i~~~~~~v~EG~Ep~~Fw~~LGg~~~~~~~~~~~~~~~~~~~rLf~~s~~~ 279 (371)
T 3fg6_A 200 KLPQNSGYIWVGKGASQEEEKGAEYVASVLKCKTLRIQEGEEPEEFWNSLGGKKDYQTSPLLETQAEDHPPRLYGCSNKT 279 (371)
T ss_dssp ECTTSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCCCHHHHHHTTSCCCCBCCTTTSSCCCSSCCEEEEEECTT
T ss_pred EcCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHcCCCcccCcchhhcccccccCcEEEEEEcCC
Confidence 999 99999999999999999977543 667887 2 11
Q ss_pred ----------------CCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923 236 ----------------AKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273 (273)
Q Consensus 236 ----------------~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~ 273 (273)
..+++|||||++.+||||+|++|+++||+.|+.+|++.
T Consensus 280 G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as~~Er~~A~~~A~~y 333 (371)
T 3fg6_A 280 GRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLKSAKMY 333 (371)
T ss_dssp SSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHTTC
T ss_pred CcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 12245999999999999999999999999999999863
No 3
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=100.00 E-value=7.1e-38 Score=274.71 Aligned_cols=183 Identities=25% Similarity=0.310 Sum_probs=32.7
Q ss_pred CccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcce
Q psy8923 83 QIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYT 162 (273)
Q Consensus 83 ~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~ 162 (273)
.....+|.|+|.+++.++.+.+++.+.+|++.++|.|+|+|+.||+||++|+++|++++++++|+ ...... ......
T Consensus 102 ~~~~~i~~W~G~~ss~de~g~aa~~av~Ld~~lgg~~vq~Re~QG~Es~~Fls~Fkg~iii~~Gg-~~~~~~--~~~~~~ 178 (398)
T 3fg7_A 102 KQHYLLYVWQGSQASQDEITASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIFKGRMVVYQGG-TSRTNN--LETGPS 178 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCceEEEEeecCCCCHHHHHHhCCeEEEeeCC-cccCCc--cCccCC
Confidence 34567999999999999999999999999999999999999999999999999999999999999 543211 122335
Q ss_pred eeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhh----------------
Q psy8923 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL---------------- 226 (273)
Q Consensus 163 ~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~---------------- 226 (273)
+|||+|+|+ ...++++.|||++++|||++||||||+++.+|+|+|++|+.+||.+|..+|
T Consensus 179 ~rLf~VrG~----~~~~~ra~EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss~~Er~~A~~va~~i~~~~~~~v~EG~E 254 (398)
T 3fg7_A 179 TRLFQVQGT----GANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGDEREMAKMVADTISRTEKQVVVEGQE 254 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEECC----CCCceEEEEecCCHHHccCCceEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCC
Confidence 799999998 234789999999999999999999999999999999999999998876433
Q ss_pred cccccc--C---CC---------------------------------------CCCceEEEEeCCceEEEEeCCCcchHh
Q psy8923 227 KLFIWN--G---PK---------------------------------------AKNTFVFLLDAGLKLFIWNGPKAKNTF 262 (273)
Q Consensus 227 ~~~fw~--~---~~---------------------------------------~~~~~v~~ld~~~~~~~w~G~~a~~~~ 262 (273)
+.+||+ | +| ...++|||||+|.+||||+|++|++.|
T Consensus 255 p~~Fw~~LGg~~~~~~~~~~~~~~~~~~~rLf~~s~~~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as~~E 334 (398)
T 3fg7_A 255 PANFWMALGGKAPYANTKRLQEENLVITPRLFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEE 334 (398)
T ss_dssp -----------------------CCCCCCEEEEEECTTSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCCHHH
T ss_pred chhHHHHhCCCccCCChhhhccchhcccCeeEEEEcCCCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCCHHH
Confidence 678998 1 11 122459999999999999999999999
Q ss_pred HHhHHHHhhh
Q psy8923 263 KSKTRLLAEK 272 (273)
Q Consensus 263 ~~~~~~~~~~ 272 (273)
|+.|+.+|++
T Consensus 335 r~~Al~~A~~ 344 (398)
T 3fg7_A 335 KKAAATTAQE 344 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 4
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=100.00 E-value=4.3e-36 Score=260.44 Aligned_cols=182 Identities=24% Similarity=0.300 Sum_probs=156.0
Q ss_pred ccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCC-cEEecCCcccccceecccCcce
Q psy8923 84 IPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTG-ISYIEGGRTASGFFTVEDTVYT 162 (273)
Q Consensus 84 ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~-i~~l~g~~~~s~~~~~~~~~~~ 162 (273)
....+|.|+|.+++.++.+.+++.+.+|++.+++.++|+|+.||+||.+|+++|+++ +++++|+...+++. .....
T Consensus 48 ~~~~i~~W~G~~ss~de~~~aa~~~~~ld~~lgg~~vq~R~~Qg~Es~~Fl~~F~g~~~ii~~gg~~~~~~~---~~~~~ 124 (344)
T 2fh1_A 48 QGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQ---TAPAS 124 (344)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTSCSEEEEEETTCCCHHHHGGGTTCCEEEESCCCCTTTCS---CCCCS
T ss_pred ceEEEEEEecCCCCHhHHHHHHHHHHHHHHHhCCCceEEEeecCCCCHHHHHhhCCCeEEEEcCCcccCCcc---CCCCC
Confidence 456799999999999999999999999999999999999999999999999999987 67778762333321 23345
Q ss_pred eeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhh---------------c
Q psy8923 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL---------------K 227 (273)
Q Consensus 163 ~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~---------------~ 227 (273)
+|||||+|+ ...++++.|||++++|||++|||||++++.+|+|+|++|+..||..|..+| +
T Consensus 125 ~rL~~v~g~----~~~~~~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~~er~~A~~~a~~l~~~i~~v~EG~E~ 200 (344)
T 2fh1_A 125 TRLFQVRAN----SAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVLRAQPVQVAEGSEP 200 (344)
T ss_dssp SEEEEEEEC----TTCCEEEEEECCSGGGCBTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHTTCCCEEEETTCCC
T ss_pred ceEEEEECC----CCCceEEEEecCchhhcCCCceEEEecCCEEEEEECCCCCHHHHHHHHHHHHHhCCCcEEEeCCCCc
Confidence 799999998 346899999999999999999999999999999999999999999887653 6
Q ss_pred ccccc--C---CCC-----------------------------------------CCceEEEEeCCceEEEEeCCCcchH
Q psy8923 228 LFIWN--G---PKA-----------------------------------------KNTFVFLLDAGLKLFIWNGPKAKNT 261 (273)
Q Consensus 228 ~~fw~--~---~~~-----------------------------------------~~~~v~~ld~~~~~~~w~G~~a~~~ 261 (273)
++||+ | +|. .+++|||||+|.+||||+|++|++.
T Consensus 201 ~~Fw~~LGg~~~y~~~~~~~~~~~~~~~~rLf~~s~~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~~ 280 (344)
T 2fh1_A 201 DGFWEALGGKAAYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEE 280 (344)
T ss_dssp HHHHHHTTSCCCCBCCHHHHCSCC--CCCEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHH
T ss_pred HHHHHhcCCCCccccccccccccccccCCEEEEEEcCCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCCHH
Confidence 67887 2 111 1245999999999999999999999
Q ss_pred hHHhHHHHhhh
Q psy8923 262 FKSKTRLLAEK 272 (273)
Q Consensus 262 ~~~~~~~~~~~ 272 (273)
||+.|+.+|++
T Consensus 281 er~~A~~~A~~ 291 (344)
T 2fh1_A 281 EKTEALTSAKR 291 (344)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999975
No 5
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=100.00 E-value=1e-35 Score=280.23 Aligned_cols=224 Identities=24% Similarity=0.364 Sum_probs=182.9
Q ss_pred hcCCccCCEeeccCCcCccCCCCcccc-CC---CCCCEEecccCCCCCccchhhhhhhcccccchhccccccccchhhhh
Q psy8923 40 LTELQCLRTLNLRYNKIKNSGIPVDLF-HL---EDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFL 115 (273)
Q Consensus 40 ~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l---~~L~~L~Ls~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l 115 (273)
.++-+.|+...+-+..+.. +|+... .+ -+-..|+--...=..+...||.|+|.+++.++.+.+++.+++|++.+
T Consensus 9 ~g~~~g~~iWrIe~~~~~~--v~~~~~G~Fy~gdsYivL~t~~~~~~~~~~~i~~W~G~~ss~de~g~aA~~tveLd~~l 86 (729)
T 1d0n_A 9 AGKEPGLQIWRVEKFDLVP--VPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAAAIFTVQLDDYL 86 (729)
T ss_dssp TTSSSEEEEEEECSSSEEE--CCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCeEEEEEcCCEEEe--CChHhcCcccCCCEEEEEEeccCCCCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 4556777887777666665 776432 11 12222331111111456689999999999999999999999999999
Q ss_pred hhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcc-eeeEEEEecCcccCCCCceEEEEecCCCCCCCC
Q psy8923 116 AAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVY-TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDP 194 (273)
Q Consensus 116 ~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~-~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s 194 (273)
+|.|+|+|+.||+||++|+++|++++++++|+ ..++|.++.+..+ .+|||||+|+ +++++.|||++++|||+
T Consensus 87 gg~~vq~Re~Qg~Es~~Fl~~Fk~~i~~~~Gg-~~sgf~~v~~~~~~~~rL~~vkG~------~~v~~~eV~~s~~SLns 159 (729)
T 1d0n_A 87 NGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFKHVVPNEVVVQRLLQVKGR------RVVRATEVPVSWESFNN 159 (729)
T ss_dssp TSCCEEEEEETTCCCHHHHHTCSSCEEEESCC-TTTTCCCCCCSSCCCCEEEEEECS------SSCEEEEECSSGGGCCS
T ss_pred CCcceEEEEecCCCCHHHHHhccCCcEEeeCC-cccCcccccccCCCCcEEEEEECC------CcEEEEEEeccHHHcCC
Confidence 99999999999999999999999999999999 9999999887664 6799999998 68999999999999999
Q ss_pred CCEEEEECCCeEEEEeCCCCCHHHHHHhhhhh----------------------cccccc--C---CCC-----------
Q psy8923 195 RFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL----------------------KLFIWN--G---PKA----------- 236 (273)
Q Consensus 195 ~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~----------------------~~~fw~--~---~~~----------- 236 (273)
+||||||+++.+|+|+|++|+..||..|..+| +++||+ | +|.
T Consensus 160 ~DvFILd~g~~iy~W~G~~s~~~Er~kA~~~a~~i~~~er~g~~~i~~v~Eg~e~~eFw~~LGg~~~~~~~~~~~~~~~~ 239 (729)
T 1d0n_A 160 GDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQVLGPKPTLPEATEDTVKEDA 239 (729)
T ss_dssp SSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHHHHHSGGGCSEEEEEETTCCCHHHHHHHCSCCCCCCCCGGGSCCCC
T ss_pred CCeEEEEcCCEEEEEECCCCCHHHHHHHHHHHHHHhhhhcCCCccEEEecCCCChHHHHHHcCCCcccCCCCcchhhhhh
Confidence 99999999999999999999999999876543 457887 2 110
Q ss_pred ----------------------------------CCceEEEEeCCc-e-EEEEeCCCcchHhHHhHHHHhhh
Q psy8923 237 ----------------------------------KNTFVFLLDAGL-K-LFIWNGPKAKNTFKSKTRLLAEK 272 (273)
Q Consensus 237 ----------------------------------~~~~v~~ld~~~-~-~~~w~G~~a~~~~~~~~~~~~~~ 272 (273)
.+++|||||+|. + ||||+|++|+..||+.|+.+|++
T Consensus 240 ~~~~~~rLy~vs~~~G~l~~~ev~~~~~~~q~~L~~~dv~ILD~g~~~~ifVW~Gk~a~~~er~~A~~~A~~ 311 (729)
T 1d0n_A 240 ANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASD 311 (729)
T ss_dssp CCCCCCEEEEEECSSSSCEEEEEESSSSBCGGGCCTTSEEEEEEGGGTEEEEEECTTSCHHHHTTHHHHHHH
T ss_pred ccccCcEEEEEECCCCCEEEEEeccCCCCCHHHcCCCCEEEEecCCccEEEEEECCCCCHHHHHHHHHHHHH
Confidence 113599999995 4 99999999999999999999975
No 6
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=100.00 E-value=3e-34 Score=270.23 Aligned_cols=182 Identities=23% Similarity=0.300 Sum_probs=158.8
Q ss_pred ccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCC-cEEecCCcccccceecccCcce
Q psy8923 84 IPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTG-ISYIEGGRTASGFFTVEDTVYT 162 (273)
Q Consensus 84 ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~-i~~l~g~~~~s~~~~~~~~~~~ 162 (273)
....+|.|+|.+++.++.+.+++.+.+|++.+++.|+|+|+.||+||++|+++|+++ +++++|+ ..+ .+.......
T Consensus 433 ~~~~iyfW~G~~ss~de~g~aa~~~veLd~~lgg~~vq~R~~Qg~E~~~Fl~~F~g~~~ii~~Gg-~~~--~~~~~~~~~ 509 (729)
T 1d0n_A 433 QGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGG-TSR--EGGQTAPAS 509 (729)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTSCSEEEEEETTCCCHHHHTTSTTSCEEEESSC-CCS--SCCCCCCCS
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCceEEecccCCCCHHHHHhcCCCeEEEEeCC-ccc--cCccCCCCC
Confidence 345789999999999999999999999999999999999999999999999999999 9999999 443 222333456
Q ss_pred eeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhh---------------c
Q psy8923 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL---------------K 227 (273)
Q Consensus 163 ~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~---------------~ 227 (273)
+|||+|+|+ ...++++.|||++++||||+|||||++++.+|+|+|++|+.+||.+|..+| +
T Consensus 510 ~rLf~vrg~----~~~~~~~~eV~~~~ssLns~d~fIL~~~~~iyvW~G~~s~~~er~~A~~~a~~l~~~~~~v~EG~E~ 585 (729)
T 1d0n_A 510 TRLFQVRAS----SSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRAQPVQVAEGSEP 585 (729)
T ss_dssp SEEEEEEEC----TTSCEEEEEECCCGGGCCSSSEEEEECSSCCBCEECTTCCHHHHHHHHHHHHHHTCCCCCEETTCCC
T ss_pred CEEEEEECC----CCCceEEEEecCChhhcCcCCeEEEecCCeEEEEECCCCCHHHHHHHHHHHHHhccCcEEEeCCCCh
Confidence 799999998 346899999999999999999999999999999999999999999987653 7
Q ss_pred ccccc--C---CCC-----------------------------------------CCceEEEEeCCceEEEEeCCCcchH
Q psy8923 228 LFIWN--G---PKA-----------------------------------------KNTFVFLLDAGLKLFIWNGPKAKNT 261 (273)
Q Consensus 228 ~~fw~--~---~~~-----------------------------------------~~~~v~~ld~~~~~~~w~G~~a~~~ 261 (273)
++||+ | +|+ ..++|||||+|.+||||+|++|++.
T Consensus 586 ~~FW~~LGg~~~y~~~~~~~~~~~~~~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~~ 665 (729)
T 1d0n_A 586 DSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDE 665 (729)
T ss_dssp HHHHHTTTSCCCCCCCCCCSTTHHHHSCCEEEEEECTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSCHH
T ss_pred HHHHHhcCCCCccCcccccccccccccCCeEEEEEcCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCCHH
Confidence 78887 1 221 1235999999999999999999999
Q ss_pred hHHhHHHHhhh
Q psy8923 262 FKSKTRLLAEK 272 (273)
Q Consensus 262 ~~~~~~~~~~~ 272 (273)
||+.|+.+|++
T Consensus 666 er~~al~~A~~ 676 (729)
T 1d0n_A 666 EKTEALTSAKR 676 (729)
T ss_dssp HHSSHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999975
No 7
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=99.76 E-value=1.3e-18 Score=126.35 Aligned_cols=90 Identities=26% Similarity=0.335 Sum_probs=69.2
Q ss_pred ccceecccCcceeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhcccc
Q psy8923 151 SGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFI 230 (273)
Q Consensus 151 s~~~~~~~~~~~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~f 230 (273)
+||.++++..+.++||||+|+ .++++.|||++++|||++||||||+++.+|+|+|++|+..||..|..+|...
T Consensus 1 SGf~~v~~~~~~~rL~~v~G~------~~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i- 73 (114)
T 1svq_A 1 SGFNHVKPTEYKPRLLHISGD------KNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI- 73 (114)
T ss_dssp ---------CCCEEEEEEECT------TSCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH-
T ss_pred CCCccccCCCCCcEEEEEECC------CcEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh-
Confidence 468888887788899999998 7899999999999999999999999999999999999999999998887543
Q ss_pred ccCCCCCCceEEEEeCCc
Q psy8923 231 WNGPKAKNTFVFLLDAGL 248 (273)
Q Consensus 231 w~~~~~~~~~v~~ld~~~ 248 (273)
+.++.....|.++|.|.
T Consensus 74 -~~er~g~~~i~vv~eg~ 90 (114)
T 1svq_A 74 -DAERKGLPKVEVFCETD 90 (114)
T ss_dssp -HHHHTTCSEEEECCCCT
T ss_pred -hhccCCCccEEEEeCCC
Confidence 32222224688888877
No 8
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=99.71 E-value=1.1e-17 Score=145.13 Aligned_cols=161 Identities=22% Similarity=0.238 Sum_probs=126.3
Q ss_pred ccchhhhhhhcccccchhccccccccchh-hhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcce
Q psy8923 84 IPDALENAKRTKATLDKRACSAIHAVNLR-NFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYT 162 (273)
Q Consensus 84 ip~~l~~w~g~~~~~~~~~~~~l~~~~L~-~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~ 162 (273)
.+..+|.|.|..++..++..+...+..+. +..++.+....+.+|.|+..|..+++++..+..+. ...+..........
T Consensus 169 ~~~~iy~W~G~~s~~~Er~~A~~~a~~i~~~~~~g~~~v~~v~EG~E~~~Fw~~LGg~~~~~~~~-~~~d~~~~~~~~~~ 247 (347)
T 1j72_A 169 LGQNIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKPALKEGN-PEEDLTADKANAQA 247 (347)
T ss_dssp ETTEEEEEECTTCCHHHHHHHHHHHHHHHTTSCCSSCEEEEEETTCCCHHHHHHHCSCCCCBCSC-CSSCCTTSSSSSCC
T ss_pred cCCEEEEEECCCCCHHHHHHHHHHHHHHHhhccCCCceEEEEeCCCCHHHHHHHhCCCcccccCC-cchhhhhhhhcccC
Confidence 35579999999999999988877777774 34556666777889999999999999876655554 32222112223346
Q ss_pred eeEEEEecCcccCCCCceEEEEe----cCCCCCCCCCCEEEEECC--CeEEEEeCCCCCHHHHHHhhhhhccccccCCCC
Q psy8923 163 TRLYRVHAPLHQAQASSIHLEPV----PVLSESLDPRFVFLLDAG--LKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKA 236 (273)
Q Consensus 163 ~~L~~v~g~~~~~~~~~~~~~ev----~~~~ssL~s~dvfild~~--~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~ 236 (273)
++||+|+.. .+...+.+| |++.++|+++||||||++ ..+|||.|++|+..||..|...|..++-...++
T Consensus 248 ~rLy~vs~~-----~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~er~~A~~~A~~y~~~~~rp 322 (347)
T 1j72_A 248 AALYKVSDA-----TGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEGFISRMQYA 322 (347)
T ss_dssp CEEEEEECT-----TSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEECC-----CCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 799999966 477888899 899999999999999999 899999999999999999998886665444555
Q ss_pred CCceEEEEeCCceE
Q psy8923 237 KNTFVFLLDAGLKL 250 (273)
Q Consensus 237 ~~~~v~~ld~~~~~ 250 (273)
....|.++..|.|.
T Consensus 323 ~~~~i~~v~eG~Ep 336 (347)
T 1j72_A 323 PNTQVEILPQGRES 336 (347)
T ss_dssp TTCEEEEEETTCCC
T ss_pred CCCeEEEEcCCCCC
Confidence 66789999888764
No 9
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=99.71 E-value=4.5e-17 Score=116.43 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=69.5
Q ss_pred eeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceE
Q psy8923 162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFV 241 (273)
Q Consensus 162 ~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v 241 (273)
.+|||||+|+ +++++.|||++++|||++||||||+++.+|+|+|++|+..||..|..+|.. +.+.++.....|
T Consensus 2 ~~rL~~v~g~------~~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~-i~~~er~~~~~i 74 (104)
T 1kcq_A 2 VQRLFQVKGR------RVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKG-IRDNERSGRARV 74 (104)
T ss_dssp CCEEEEEEES------SSEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHH-HHHHTSTTCSEE
T ss_pred CcEEEEEECC------CcEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHH-HHhhccCCCCcE
Confidence 4799999998 799999999999999999999999999999999999999999999988743 333233334578
Q ss_pred EEEeCCceE
Q psy8923 242 FLLDAGLKL 250 (273)
Q Consensus 242 ~~ld~~~~~ 250 (273)
.++|.|.|.
T Consensus 75 ~~v~eG~E~ 83 (104)
T 1kcq_A 75 HVSEEGTEP 83 (104)
T ss_dssp EEEETTCCC
T ss_pred EEEeCCCCC
Confidence 888988763
No 10
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=99.68 E-value=3.9e-18 Score=142.72 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=95.7
Q ss_pred hhhcCCccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecc--cCCCCCccchhhhhhhcccccchhccccccccchhh
Q psy8923 38 GELTELQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLS--HNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRN 113 (273)
Q Consensus 38 ~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls--~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~ 113 (273)
...++-+.|+...+.+-.... +|.... .+ ..=.++-|. .+.=..+...||.|+|.+++.++.+++++.+.+|++
T Consensus 27 ~~~g~~~Gl~iWrIe~~~~~~--v~~~~~G~Fy~gd~Yivl~t~~~~~g~~~~~i~~W~G~~ss~de~g~aa~~av~Ld~ 104 (297)
T 3tu5_B 27 LKAGKEPGLQIWRVEKFDLVP--VPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDD 104 (297)
T ss_dssp HHTTSSSEEEEEEEETTEEEE--CCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred hccCCCCceEEEEEcCCEEEE--CCHHHcCeecCCCeEEEeEeEECCCCceeEEEEEEeCCCCChhHHHHHHHHHHHHHH
Confidence 334556778999887777765 776432 21 222233332 111124566799999999999999999999999999
Q ss_pred hhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcceeeEEEEecCcccCCCCceEEEEecCCCCCCC
Q psy8923 114 FLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLD 193 (273)
Q Consensus 114 ~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~ 193 (273)
.+++.++|+|+.||+|+.+|++||++++++++|| ..+||.++++..+.+|+.++... ......++.+++.+++
T Consensus 105 ~lgg~~vq~Re~Qg~Es~~Fl~~F~~~i~~~~GG-~~sgf~~v~~~~~~~r~~rl~~~------e~~~~r~~~ls~vs~~ 177 (297)
T 3tu5_B 105 YLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASKLRKVAEQTSEGRPKKPSYV------EAESERSALLAAIRGH 177 (297)
T ss_dssp HTTTCCEEEEEETTCCCHHHHTTCTTCCEEESCC-CCCCCBCCCCCC---------------------------------
T ss_pred HcCCCceEEEEeCCcCCHHHHHHhccCcEEecCC-CCCCCceecccCCCCcccceeee------eccccccceeeEEecc
Confidence 9999999999999999999999999999999999 99999999988887776666655 2223455678889999
Q ss_pred CCCEEEEECCCeEEEEeCCCC
Q psy8923 194 PRFVFLLDAGLKLFIWNGPKA 214 (273)
Q Consensus 194 s~dvfild~~~~~~vW~G~~s 214 (273)
++|||++|.+..+|.|.++..
T Consensus 178 ~Gd~fi~Dv~~~A~q~le~~r 198 (297)
T 3tu5_B 178 SGTLSLRKVSSLASEELQSFR 198 (297)
T ss_dssp ---------------------
T ss_pred CCceeeccccHHHHHHHHHHH
Confidence 999999999999999987654
No 11
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=99.56 E-value=1e-14 Score=127.99 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=74.2
Q ss_pred CCCCccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccC
Q psy8923 80 NIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDT 159 (273)
Q Consensus 80 ~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~ 159 (273)
.+-..+..+|.|.|..++..++..+...+..+.+ .....+.+|.||..|...++++-.+.... . .. ....
T Consensus 210 FILd~~~~iyvW~G~~ss~~Er~~A~~va~~i~~-----~~~~~v~EG~Ep~~Fw~~LGg~~~~~~~~-~---~~-~~~~ 279 (398)
T 3fg7_A 210 FVLKTQSCCYLWCGKGCSGDEREMAKMVADTISR-----TEKQVVVEGQEPANFWMALGGKAPYANTK-R---LQ-EENL 279 (398)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred EEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHhcC-----CcEEEEeCCCCchhHHHHhCCCccCCChh-h---hc-cchh
Confidence 3445577899999999999988766665555532 12233567889999999888753322111 0 00 0112
Q ss_pred cceeeEEEEecCcccCCCCceEEEEe-cCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccC--CCC
Q psy8923 160 VYTTRLYRVHAPLHQAQASSIHLEPV-PVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNG--PKA 236 (273)
Q Consensus 160 ~~~~~L~~v~g~~~~~~~~~~~~~ev-~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~--~~~ 236 (273)
...+|||+|+.. .+...+.|| |++.+.|+++||||||++..+|||.|++|+..||..|...|..++-.. +++
T Consensus 280 ~~~~rLf~~s~~-----~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as~~Er~~Al~~A~~yi~~~~~~r~ 354 (398)
T 3fg7_A 280 VITPRLFECSNK-----TGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAAATTAQEYLKTHPSGRD 354 (398)
T ss_dssp CCCCEEEEEECT-----TSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHHHHHSSSSCC
T ss_pred cccCeeEEEEcC-----CCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHHHHHHHHHhCcccCC
Confidence 346799999987 677889998 599999999999999999999999999999999999999886665442 455
Q ss_pred CCceEEEEeCCceEEE
Q psy8923 237 KNTFVFLLDAGLKLFI 252 (273)
Q Consensus 237 ~~~~v~~ld~~~~~~~ 252 (273)
..+.|.++-.|.|.-.
T Consensus 355 ~~tpi~~V~eG~Ep~~ 370 (398)
T 3fg7_A 355 PETPIIVVKQGHEPPT 370 (398)
T ss_dssp TTCCEEEEETTCCCHH
T ss_pred CCCCEEEEcCCCCCHH
Confidence 5678999988887543
No 12
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=125.42 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=108.6
Q ss_pred chhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcceeeE
Q psy8923 86 DALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRL 165 (273)
Q Consensus 86 ~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~~~L 165 (273)
..+|.|.|..++..++..+...+..+. ... ..+.+|.||..|...++++-.+.... . .. .....+.+||
T Consensus 204 ~~iyvW~G~~ss~~Er~~A~~~a~~i~----~~~--~~v~EG~Ep~~Fw~~LGg~~~~~~~~-~---~~-~~~~~~~~rL 272 (371)
T 3fg6_A 204 NSGYIWVGKGASQEEEKGAEYVASVLK----CKT--LRIQEGEEPEEFWNSLGGKKDYQTSP-L---LE-TQAEDHPPRL 272 (371)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHTT----CEE--EEEETTCCCHHHHHHTTSCCCCBCCT-T---TS-SCCCSSCCEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHhc----CCe--EEEeCCCCCHHHHHHcCCCcccCcch-h---hc-ccccccCcEE
Confidence 578999999999988776555444432 222 34667899999999998764332211 0 00 0112345799
Q ss_pred EEEecCcccCCCCceEEEEe--cCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccC--CCCCCceE
Q psy8923 166 YRVHAPLHQAQASSIHLEPV--PVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNG--PKAKNTFV 241 (273)
Q Consensus 166 ~~v~g~~~~~~~~~~~~~ev--~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~--~~~~~~~v 241 (273)
|+|+.. .+...+.+| |++.+.|+++||||||++..+|||.|++|+..||..|...|..++-.. +++..+.|
T Consensus 273 f~~s~~-----~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as~~Er~~A~~~A~~yi~~~~~~r~~~t~i 347 (371)
T 3fg6_A 273 YGCSNK-----TGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLKSAKMYLETDPSGRDKRTPI 347 (371)
T ss_dssp EEEECT-----TSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHTTCC----------CCE
T ss_pred EEEEcC-----CCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHHHHHHHHHhCccCCCCCCCE
Confidence 999987 577889998 589999999999999999999999999999999999999886665443 45566789
Q ss_pred EEEeCCceEEE
Q psy8923 242 FLLDAGLKLFI 252 (273)
Q Consensus 242 ~~ld~~~~~~~ 252 (273)
+++-.|.|.-.
T Consensus 348 ~~v~eG~Ep~~ 358 (371)
T 3fg6_A 348 VIIKQGHEPPT 358 (371)
T ss_dssp EEEETTCCCHH
T ss_pred EEecCCCCCHH
Confidence 99998887543
No 13
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=99.46 E-value=5.6e-14 Score=121.58 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=108.3
Q ss_pred CccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcce
Q psy8923 83 QIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYT 162 (273)
Q Consensus 83 ~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~ 162 (273)
..|..+|.|.|..++..++..+...+..+ +. ....+.+|.|+..|...++++-.+.... . ..........
T Consensus 159 ~~~~~iyvW~G~~s~~~er~~A~~~a~~l----~~--~i~~v~EG~E~~~Fw~~LGg~~~y~~~~-~---~~~~~~~~~~ 228 (344)
T 2fh1_A 159 KTPSAAYLWVGTGASEAEKTGAQELLRVL----RA--QPVQVAEGSEPDGFWEALGGKAAYRTSP-R---LKDKKMDAHP 228 (344)
T ss_dssp ECSSCEEEEECTTCCHHHHHHHHHHHHHT----TC--CCEEEETTCCCHHHHHHTTSCCCCBCCH-H---HHCSCC--CC
T ss_pred ecCCEEEEEECCCCCHHHHHHHHHHHHHh----CC--CcEEEeCCCCcHHHHHhcCCCCcccccc-c---cccccccccC
Confidence 34667999999999988876554433333 22 2334667889999999998753222111 0 0000112346
Q ss_pred eeEEEEecCcccCCCCceEEEEe--cCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccC--CCCCC
Q psy8923 163 TRLYRVHAPLHQAQASSIHLEPV--PVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNG--PKAKN 238 (273)
Q Consensus 163 ~~L~~v~g~~~~~~~~~~~~~ev--~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~--~~~~~ 238 (273)
+|||+|+.. .+...+.+| |++.+.|+++||||||++..+|||.|++|+..||..|...|..++-.. .++..
T Consensus 229 ~rLf~~s~~-----~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~~er~~A~~~A~~y~~~~~~~r~~~ 303 (344)
T 2fh1_A 229 PRLFACSNK-----IGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRR 303 (344)
T ss_dssp CEEEEEECT-----TSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHHHHTC-------
T ss_pred CEEEEEEcC-----CCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHHHHHHHHHhCccCCCCC
Confidence 799999976 577889998 689999999999999999999999999999999999998886655433 45556
Q ss_pred ceEEEEeCCceEE
Q psy8923 239 TFVFLLDAGLKLF 251 (273)
Q Consensus 239 ~~v~~ld~~~~~~ 251 (273)
+.|.++-.|.|.-
T Consensus 304 t~i~~V~eG~Ep~ 316 (344)
T 2fh1_A 304 TPITVVKQGFEPP 316 (344)
T ss_dssp CCEEEEETTCCCH
T ss_pred CcEEEEcCCCCCH
Confidence 7788888887654
No 14
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=1.1e-11 Score=101.23 Aligned_cols=78 Identities=27% Similarity=0.408 Sum_probs=51.5
Q ss_pred CCCCccccCCCCCceecCCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCC
Q psy8923 3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNN 80 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~ 80 (273)
+..|..|..+++| ++|+|++|+|+.+| ..|..+++|+.|+|++|+|+. +|..+ ..+++|+.|+|++|+
T Consensus 54 ~~~~~~~~~l~~L--------~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 54 KLEPGVFDSLINL--------KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV--LPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp CCCTTTTTTCTTC--------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHhhCccCC--------cEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc--cChhHhCcchhhCeEeccCCc
Confidence 3445555555555 56777777777776 446777777777777777776 55543 467777777777777
Q ss_pred CCCccchhhh
Q psy8923 81 IKQIPDALEN 90 (273)
Q Consensus 81 l~~ip~~l~~ 90 (273)
|+.+|..+..
T Consensus 124 l~~lp~~~~~ 133 (229)
T 3e6j_A 124 LTELPRGIER 133 (229)
T ss_dssp CCSCCTTGGG
T ss_pred ccccCccccc
Confidence 7777765543
No 15
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=99.27 E-value=5.5e-13 Score=100.25 Aligned_cols=122 Identities=25% Similarity=0.342 Sum_probs=91.9
Q ss_pred hhcCCccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecc-c-CCCCCccchhhhhhhcccccchhccccccccchhhh
Q psy8923 39 ELTELQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLS-H-NNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNF 114 (273)
Q Consensus 39 ~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls-~-N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~ 114 (273)
..++-+.|+...+.+-.... +|+... .+ ..=.++-|. + ..-......+|.|+|.+++.++.+.+++.+.+|++.
T Consensus 10 ~~g~~~gl~VWrIe~~~~~~--vp~~~~G~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~ 87 (147)
T 1t44_G 10 KAGKEPGLQIWRVEKFDLVP--VPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDY 87 (147)
T ss_dssp HTTSSSEEEEEEEETTEEEE--CCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCeEEEEEeCCEEEE--CChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEeCCCCChhHHHHHHHHHHHHHHH
Confidence 34455677777777666665 775422 11 111122221 1 111144567999999999999999999999999999
Q ss_pred hhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCccee
Q psy8923 115 LAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTT 163 (273)
Q Consensus 115 l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~~ 163 (273)
+++.++|+|+.||+||++|+++|++++++++|+ ..++++++++..+.+
T Consensus 88 lgg~~vq~R~~QG~Ep~~Fl~~F~~~iii~~Gg-~~s~~k~~et~~~~~ 135 (147)
T 1t44_G 88 LNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFKHVETQEKNP 135 (147)
T ss_dssp TTTCCEEEEEETTCCCHHHHTTCTTCCEEESCC-CCCCCBCCCCEECCC
T ss_pred cCCCceEEEEECCCCCHHHHHHhCCCeEEEeCC-cccccceeccccccC
Confidence 999999999999999999999999999999999 999999988765543
No 16
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=1.9e-11 Score=95.59 Aligned_cols=66 Identities=35% Similarity=0.484 Sum_probs=58.2
Q ss_pred CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccchh
Q psy8923 21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPDAL 88 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~l 88 (273)
.+|++|+|++|+|+++ |..|.++++|++|+|++|+|++ +|..+ .++++|+.|+|++|+|+.+|...
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 100 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDNHLKSIPRGA 100 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCCCccceeCHHH
Confidence 4668899999999998 4789999999999999999998 88775 58999999999999999988763
No 17
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.25 E-value=1.9e-11 Score=99.12 Aligned_cols=62 Identities=29% Similarity=0.347 Sum_probs=35.1
Q ss_pred CccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCcc
Q psy8923 22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 22 ~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip 85 (273)
+|++|+|++|+|+++ |..|.++++|++|+|++|+|+. +|..+ .++++|+.|+|++|+|+.++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--cCHhHccCCCCCCEEECCCCCCCEeC
Confidence 345566666666654 4556666666666666666665 55443 35556666666666655443
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.25 E-value=6e-12 Score=120.20 Aligned_cols=80 Identities=31% Similarity=0.393 Sum_probs=54.6
Q ss_pred CCCCCccccCCCCCceecCCCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCC
Q psy8923 2 VGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80 (273)
Q Consensus 2 ~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~ 80 (273)
.|.+|..++.++.| ++|+|++|++++ +|..|++|++|+.|+|++|++++ .+|..++++++|+.||||+|+
T Consensus 621 ~g~~~~~~~~l~~L--------~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 621 GGHTSPTFDNNGSM--------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp EEECCCSCSSSBCC--------CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSC
T ss_pred cccCchhhhccccc--------cEEECcCCcccccCCHHHhccccCCEEeCcCCccCC-CCChHHhCCCCCCEEECCCCc
Confidence 35667777776666 447777777775 56677777777777777777774 677777777777777777777
Q ss_pred CC-Cccchhhh
Q psy8923 81 IK-QIPDALEN 90 (273)
Q Consensus 81 l~-~ip~~l~~ 90 (273)
|+ .+|..+..
T Consensus 692 l~g~ip~~l~~ 702 (768)
T 3rgz_A 692 LDGRIPQAMSA 702 (768)
T ss_dssp CEECCCGGGGG
T ss_pred ccCcCChHHhC
Confidence 77 66665544
No 19
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=2.9e-11 Score=96.13 Aligned_cols=63 Identities=29% Similarity=0.471 Sum_probs=35.1
Q ss_pred ccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCc-cccCCCCCCEEecccCCCCCccch
Q psy8923 23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPV-DLFHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 23 l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
|++|+|++|.|++++ ..|.++++|+.|+|++|+|+. +|. .+.++++|+.|+|++|+|+.+|..
T Consensus 56 L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~--i~~~~f~~l~~L~~L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC--IPPRTFDGLKSLRLLSLHGNDISVVPEG 120 (193)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE--eCHHHhCCCCCCCEEECCCCCCCeeChh
Confidence 344566666666554 445556666666666666655 333 344555666666666666555543
No 20
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=1.6e-11 Score=93.20 Aligned_cols=73 Identities=32% Similarity=0.387 Sum_probs=50.0
Q ss_pred CCCCccccCCCCCceecCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923 3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
|.+|..++.+++| ++|+|++|.|+++ ..++.+++|++|+|++|++++ .+|..+..+++|+.|++++|+++
T Consensus 32 ~~~~~~~~~l~~L--------~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~ls~N~i~ 101 (149)
T 2je0_A 32 GKLEGLTDEFEEL--------EFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG-GLEVLAEKCPNLTHLNLSGNKIK 101 (149)
T ss_dssp TBCCSCCTTCTTC--------CEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCS-CTHHHHHHCTTCCEEECTTSCCC
T ss_pred hHHHHHHhhcCCC--------cEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccc-hHHHHhhhCCCCCEEECCCCcCC
Confidence 5677777777766 5577777777776 666677777777777777775 45555555777777777777777
Q ss_pred Ccc
Q psy8923 83 QIP 85 (273)
Q Consensus 83 ~ip 85 (273)
.+|
T Consensus 102 ~~~ 104 (149)
T 2je0_A 102 DLS 104 (149)
T ss_dssp SHH
T ss_pred ChH
Confidence 654
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.22 E-value=9.6e-12 Score=118.80 Aligned_cols=78 Identities=29% Similarity=0.445 Sum_probs=72.3
Q ss_pred CCCCCCccccCCCCCceecCCCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccC
Q psy8923 1 MVGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79 (273)
Q Consensus 1 ~~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N 79 (273)
++|.+|..|+.++.| +.|+|++|+|++ ||..|++|++|+.|+|++|++++ .+|..+.++++|+.|+||+|
T Consensus 644 l~g~ip~~l~~l~~L--------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 644 LSGYIPKEIGSMPYL--------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG-RIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CBSCCCGGGGGCTTC--------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE-CCCGGGGGCCCCSEEECCSS
T ss_pred ccccCCHHHhccccC--------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECcCC
Confidence 578999999999888 559999999997 89999999999999999999996 89999999999999999999
Q ss_pred CCC-Cccch
Q psy8923 80 NIK-QIPDA 87 (273)
Q Consensus 80 ~l~-~ip~~ 87 (273)
+|+ .||..
T Consensus 715 ~l~g~iP~~ 723 (768)
T 3rgz_A 715 NLSGPIPEM 723 (768)
T ss_dssp EEEEECCSS
T ss_pred cccccCCCc
Confidence 999 88874
No 22
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.21 E-value=6e-11 Score=92.71 Aligned_cols=65 Identities=25% Similarity=0.265 Sum_probs=53.4
Q ss_pred CccEEEccCCCCCCchh-hhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccchh
Q psy8923 22 LTEHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDAL 88 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~-~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~l 88 (273)
+|++|+|++|+|+++|+ .|..+++|+.|+|++|+|+. +|.. +..+++|+.|+|++|++...+..+
T Consensus 58 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS--IPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce--eCHHHhccccCCCEEEeCCCCcccccccH
Confidence 44779999999999874 57889999999999999997 7765 668899999999999998766543
No 23
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=5.5e-11 Score=92.52 Aligned_cols=67 Identities=31% Similarity=0.450 Sum_probs=58.4
Q ss_pred CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccchhh
Q psy8923 21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
.+|++|+|++|+|+++ |..|..+++|++|+|++|+|+. +|..+ ..+++|+.|+|++|+|+.+|...+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 98 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCCCccCEeCHHHh
Confidence 5678899999999998 4779999999999999999998 77765 589999999999999998887533
No 24
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=99.19 E-value=2.9e-12 Score=96.20 Aligned_cols=115 Identities=24% Similarity=0.339 Sum_probs=87.7
Q ss_pred hhhcCCccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecc-c-CCCCCccchhhhhhhcccccchhccccccccchhh
Q psy8923 38 GELTELQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLS-H-NNIKQIPDALENAKRTKATLDKRACSAIHAVNLRN 113 (273)
Q Consensus 38 ~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls-~-N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~ 113 (273)
...++-+.|+...+.+-.... +|+... .+ ..=.++-|. + ..-......||.|+|.+++.++.+.+++.+.+|++
T Consensus 31 ~~~g~~~gl~VWrIe~~~~v~--vp~~~~G~FysgD~YIVl~ty~~~~g~~~~~IyfW~G~~ss~de~gaAA~~aveLd~ 108 (150)
T 2ff3_A 31 LKAGKEPGLQIWRVEKFDLVP--VPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDD 108 (150)
T ss_dssp HHTTSSSEEEEEEEETTEEEE--CCGGGTTEEETTSEEEEEEEEECTTSSEEEEEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCeEEEEEeCCEEEE--CChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEeCCCCCchhHHHHHHHHHHHHH
Confidence 345556778888888766665 776432 11 111122221 1 11114456799999999999999999999999999
Q ss_pred hhhhhhhhcccccCCCchhhHhhccCCcEEecCCccccccee
Q psy8923 114 FLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFT 155 (273)
Q Consensus 114 ~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~ 155 (273)
.+++.++|+|+.||+||++|+++|++++++++|+ ..++|++
T Consensus 109 ~lgg~~vQ~Re~QG~Ep~~Fl~lFkg~iii~~GG-~~Sgf~~ 149 (150)
T 2ff3_A 109 YLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFKH 149 (150)
T ss_dssp HTTTCCEEEEEETTCCCHHHHHTCTTCCEEESCC-CCCCCBC
T ss_pred HcCCCceEEEeECCCCCHHHHHHhcCCeEEEeCC-cCCcccc
Confidence 9999999999999999999999999999999999 8888875
No 25
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=1.1e-10 Score=95.17 Aligned_cols=68 Identities=31% Similarity=0.444 Sum_probs=60.2
Q ss_pred CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccchhhh
Q psy8923 21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
++|++|+|++|.|+++ |..|..+++|+.|+|++|+|+. +|... ..+++|+.|+|++|+|+.+|...+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence 5789999999999997 5889999999999999999998 87664 5899999999999999998876543
No 26
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=3.1e-11 Score=104.44 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=64.0
Q ss_pred CCccccCCCCCceecCCCccEEEccC-CCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923 5 EPGTFCMASKSESVTIGLTEHLSIVN-NNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 5 ~p~~~~~~~~l~~~~l~~l~~L~l~~-N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
+|. |+.+++| ++|+|++ |.|+++| ..|++|++|+.|+|++|+|++ ..|..|.+|++|+.|+|++|+|+
T Consensus 24 ip~-l~~~~~L--------~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 24 LHH-LPGAENL--------TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp TTT-SCSCSCC--------SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCCS
T ss_pred cCC-CCCCCCe--------eEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCccc
Confidence 555 5555554 7799996 9999987 789999999999999999998 34445679999999999999999
Q ss_pred Cccchhhhh
Q psy8923 83 QIPDALENA 91 (273)
Q Consensus 83 ~ip~~l~~w 91 (273)
.+|..++..
T Consensus 94 ~~~~~~~~~ 102 (347)
T 2ifg_A 94 SLSWKTVQG 102 (347)
T ss_dssp CCCSTTTCS
T ss_pred eeCHHHccc
Confidence 999876653
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.18 E-value=1.3e-10 Score=95.89 Aligned_cols=65 Identities=31% Similarity=0.484 Sum_probs=43.3
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccchh
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDAL 88 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~l 88 (273)
+|++|+|++|.|++++ ..|..+++|++|+|++|+|+. +|.. +..+++|+.|+|++|+|+.+|...
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 126 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVFDHLTQLDKLYLGGNQLKSLPSGV 126 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc--cChhHhcccCCCCEEEcCCCcCCCcChhH
Confidence 4466777777777764 456777777777777777776 5543 446777777777777777666543
No 28
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=99.18 E-value=3.3e-12 Score=93.81 Aligned_cols=112 Identities=25% Similarity=0.372 Sum_probs=84.4
Q ss_pred hhcCCccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecc-c-CCCCCccchhhhhhhcccccchhccccccccchhhh
Q psy8923 39 ELTELQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLS-H-NNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNF 114 (273)
Q Consensus 39 ~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls-~-N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~ 114 (273)
..++-+.|+...+.+..... +|+... .+ ..=.++-|. + ..-......+|.|+|.+++.++.+.+++.+.+|++.
T Consensus 13 ~~g~~~gl~vWrIe~~~~~~--vp~~~~G~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~ 90 (128)
T 3cip_G 13 KAGKEPGLQIWRVEKFDLVP--VPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDY 90 (128)
T ss_dssp HTTSSSEEEEEEEETTEEEE--CCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCeEEEEEeCCEEEE--CChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEcCCCCCcchHHHHHHHHHHHHHH
Confidence 34556678888887666665 776432 11 111122221 1 111144567999999999999999999999999999
Q ss_pred hhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccc
Q psy8923 115 LAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153 (273)
Q Consensus 115 l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~ 153 (273)
+++.++|+|+.||+||++|+++|++++++++|+ ..++|
T Consensus 91 lgg~~vq~R~~QG~E~~~Fl~~F~~~iii~~Gg-~~sgf 128 (128)
T 3cip_G 91 LNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGF 128 (128)
T ss_dssp TTTCEEEEEEETTCCCHHHHTTCTTCCEEESCC-CCCCC
T ss_pred cCCCceEEEeECCCCCHHHHHHhCCCeEEEECC-cCCCC
Confidence 999999999999999999999999999999999 77764
No 29
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=99.16 E-value=2.5e-12 Score=94.19 Aligned_cols=70 Identities=29% Similarity=0.467 Sum_probs=65.5
Q ss_pred CccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccc
Q psy8923 83 QIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153 (273)
Q Consensus 83 ~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~ 153 (273)
.....+|.|+|.+++.++.+.+++.+.+|++.+++.|+|+|+.||+||++|+++|++++++++|+ ..+++
T Consensus 56 ~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lgg~~vq~R~~QG~E~~~Fl~~F~~~iii~~Gg-~~sgf 125 (126)
T 2vik_A 56 GFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGG-VASGM 125 (126)
T ss_dssp SEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTSCSCEEEEETTTSHHHHHHHCSSCCCCCCSC-TTCSC
T ss_pred ceeEEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCCccEEEEECCCCCHHHHHHcCCCeEEEECc-ccCCC
Confidence 44567999999999999999999999999999999999999999999999999999999999999 88776
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.16 E-value=1.2e-10 Score=96.25 Aligned_cols=84 Identities=27% Similarity=0.369 Sum_probs=60.9
Q ss_pred CCCCCccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc
Q psy8923 2 VGFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD 64 (273)
Q Consensus 2 ~g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~ 64 (273)
.+..|..|+.+++|+.+.+ ++|++|+|++|.|+.+| ..|..+++|++|+|++|+|+. +|..
T Consensus 48 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~ 125 (251)
T 3m19_A 48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS--LPSG 125 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTT
T ss_pred CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC--cChh
Confidence 3445556666666666533 36778888888888876 567788888888888888887 6655
Q ss_pred c-cCCCCCCEEecccCCCCCccch
Q psy8923 65 L-FHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 65 ~-~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
. ..+++|+.|+|++|+|+.+|..
T Consensus 126 ~~~~l~~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT
T ss_pred HhccCCcccEEECcCCcCCccCHH
Confidence 4 5778888888888888877763
No 31
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=3.6e-11 Score=93.13 Aligned_cols=73 Identities=33% Similarity=0.396 Sum_probs=45.0
Q ss_pred CCCCccccCCCCCceecCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923 3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
|.+|..++.+++| ++|+|++|.|+.+ ..+..+++|++|+|++|+++. .+|..+.++++|+.|+|++|+++
T Consensus 39 ~~i~~~~~~l~~L--------~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~ 108 (168)
T 2ell_A 39 GKIEGLTAEFVNL--------EFLSLINVGLISV-SNLPKLPKLKKLELSENRIFG-GLDMLAEKLPNLTHLNLSGNKLK 108 (168)
T ss_dssp TBCSSCCGGGGGC--------CEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCS-CCCHHHHHCTTCCEEECBSSSCC
T ss_pred hhHHHHHHhCCCC--------CEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCch-HHHHHHhhCCCCCEEeccCCccC
Confidence 4667777666666 4466666666666 556666666666666666664 34444445666666666666666
Q ss_pred Ccc
Q psy8923 83 QIP 85 (273)
Q Consensus 83 ~ip 85 (273)
.+|
T Consensus 109 ~~~ 111 (168)
T 2ell_A 109 DIS 111 (168)
T ss_dssp SSG
T ss_pred cch
Confidence 554
No 32
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.5e-10 Score=90.03 Aligned_cols=74 Identities=31% Similarity=0.383 Sum_probs=57.3
Q ss_pred CCCCccccCCCCCceecCCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCC
Q psy8923 3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNN 80 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~ 80 (273)
+..|..|..+++| ++|+|++|+|+++| ..|..+++|+.|+|++|+|++ +|.. +..+++|+.|+|++|+
T Consensus 44 ~~~~~~~~~l~~L--------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 44 KLEPGVFDRLTQL--------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS--IPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCTTTTTTCTTC--------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred ccChhhhcCcccC--------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCE--eCHHHhcCCCCCCEEEeCCCC
Confidence 3344445555444 77999999999987 557899999999999999997 7765 6688999999999999
Q ss_pred CCCccc
Q psy8923 81 IKQIPD 86 (273)
Q Consensus 81 l~~ip~ 86 (273)
++..+.
T Consensus 114 ~~c~c~ 119 (170)
T 3g39_A 114 WDCACS 119 (170)
T ss_dssp BCTTBG
T ss_pred CCCCch
Confidence 985443
No 33
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=94.35 Aligned_cols=62 Identities=26% Similarity=0.312 Sum_probs=36.7
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCc
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~i 84 (273)
+|++|+|++|.|+++| ..|..+++|++|+|++|+|++ ..|..+.++++|+.|+|++|+|+.+
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEE
Confidence 4555666666666654 446666666666666666665 3344555666666666666666654
No 34
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.14 E-value=1.9e-10 Score=97.19 Aligned_cols=63 Identities=27% Similarity=0.410 Sum_probs=32.5
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCC-ccccCCCCCCEEecccCCCCCccc
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIP-VDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
+|++|+|++|+|+.+|..+..+++|++|+|++|+|+. +| ..+.++++|+.|+|++|+|+.+|.
T Consensus 78 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC--CCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcc--cCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 4555555555555555555555555555555555554 33 233355555555555555554444
No 35
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=4.5e-11 Score=113.38 Aligned_cols=68 Identities=25% Similarity=0.362 Sum_probs=46.9
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhhh
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENA 91 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~w 91 (273)
+|++|+|++|.|+.||..|++|++|++|+|++|+|+. ||..+++|++|+.|+|++|+|+.||..+..+
T Consensus 248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l 315 (727)
T 4b8c_D 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFYFFDNMVTTLPWEFGNL 315 (727)
T ss_dssp SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEECCSSCCCCCCSSTTSC
T ss_pred CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEECCCCCCCccChhhhcC
Confidence 5566777777777777667777777777777777776 6777777777777777777777777655443
No 36
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.12 E-value=3e-10 Score=90.99 Aligned_cols=64 Identities=30% Similarity=0.485 Sum_probs=39.8
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccch
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
+|++|+|++|+|+.+| ..|..+++|++|+|++|+++. +|.. +..+++|+.|+|++|+++.+|..
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 118 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS--LPNGVFDKLTQLKELALNTNQLQSLPDG 118 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc--cCHhHhcCccCCCEEEcCCCcCcccCHh
Confidence 3455666666666665 345666666666666666665 5444 34666666666666666665553
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.11 E-value=3e-10 Score=97.65 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=60.5
Q ss_pred CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchhhh
Q psy8923 20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALEN 90 (273)
Q Consensus 20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~ 90 (273)
+++|++|+|++|.|+.+|..++.+++|+.|+|++|++++ +|..+..+++|+.|+|++|++. .+|..+..
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence 567888999999999999889999999999999999998 8988889999999999998887 77765543
No 38
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=1.2e-10 Score=107.28 Aligned_cols=65 Identities=29% Similarity=0.433 Sum_probs=48.1
Q ss_pred ccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCc--cchhhh
Q psy8923 23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI--PDALEN 90 (273)
Q Consensus 23 l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~i--p~~l~~ 90 (273)
|+.|+|++|.|+.||..|+.|++|+.|+|++|+|++ +| .+.++++|+.|+|++|+|+.+ |..+..
T Consensus 465 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~ 531 (567)
T 1dce_A 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS 531 (567)
T ss_dssp CCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred CcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence 355777777777777777777777777777777776 77 677777777777777777766 555544
No 39
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.11 E-value=2.4e-10 Score=89.24 Aligned_cols=63 Identities=30% Similarity=0.481 Sum_probs=29.6
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccc
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
+|+.|+|++|.|+++| ..|..+++|++|++++|+|+. +|.. +..+++|+.|+|++|+|+.+|.
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~ 93 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHENKLQSLPN 93 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--eChhHccCCCccCEEECCCCCccccCH
Confidence 3444555555555444 234445555555555555544 3333 2344555555555555554443
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.11 E-value=1e-10 Score=108.55 Aligned_cols=79 Identities=24% Similarity=0.206 Sum_probs=67.0
Q ss_pred cCCCCCceecC---CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCc-cccCCCCCCEEecccCCCCCc
Q psy8923 10 CMASKSESVTI---GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPV-DLFHLEDLTTLDLSHNNIKQI 84 (273)
Q Consensus 10 ~~~~~l~~~~l---~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~~l~~L~~L~Ls~N~l~~i 84 (273)
|.-.+|..+|- +++++|||++|+|++|| .+|.++++|++|+|++|+|+. ||+ +|.+|++|++|+|++|+|+.+
T Consensus 38 c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp CTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCcCCCC
Confidence 44456777763 48999999999999997 689999999999999999998 766 466999999999999999999
Q ss_pred cchhhh
Q psy8923 85 PDALEN 90 (273)
Q Consensus 85 p~~l~~ 90 (273)
|...+.
T Consensus 116 ~~~~f~ 121 (635)
T 4g8a_A 116 ALGAFS 121 (635)
T ss_dssp CGGGGT
T ss_pred CHHHhc
Confidence 876543
No 41
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.09 E-value=2.3e-10 Score=90.73 Aligned_cols=58 Identities=29% Similarity=0.368 Sum_probs=29.6
Q ss_pred ccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCc-cccCCCCCCEEecccCCCC
Q psy8923 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPV-DLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 23 l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~~l~~L~~L~Ls~N~l~ 82 (273)
|++|+|++|.|+++ |..|..+++|+.|+|++|+|++ +|. .+.++++|+.|+|++|+|+
T Consensus 56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE--ISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE--ECSSSSTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc--cCHHHhcCCCCCCEEECCCCcCC
Confidence 34455555555554 3445555555555555555554 332 2345555555555555555
No 42
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.09 E-value=4.3e-10 Score=91.12 Aligned_cols=69 Identities=23% Similarity=0.365 Sum_probs=58.8
Q ss_pred CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923 21 GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
++|+.|+|++|.|+.+| ..|..+++|+.|+|++|+|+. ..|..+.++++|+.|+|++|+|+.+|..++.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-ECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-cCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence 46788999999999987 578999999999999999997 4477788999999999999999988876543
No 43
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=4.8e-10 Score=89.02 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=59.3
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCC-ccccCCCCCCEEecccCCCCCccch
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIP-VDLFHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
++|+.|+|++|.|+.+|..|..+++|+.|+|++|+|+. ++ ..+.++++|+.|+|++|+|+.+|..
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~l~~i~~~ 96 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST--LSNQSFSNMTQLLTLILSYNRLRCIPPR 96 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE--eCHhHccCCCCCCEEECCCCccCEeCHH
Confidence 47799999999999999999999999999999999998 65 4577999999999999999988764
No 44
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.07 E-value=1.8e-10 Score=91.29 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=64.3
Q ss_pred ccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCC
Q psy8923 9 FCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDL 71 (273)
Q Consensus 9 ~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L 71 (273)
|+.+++|+.+.+ ++|++|+|++|+|++++ ..|..+++|++|+|++|+|++ .+|..+..+++|
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 128 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSL 128 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCC
Confidence 666666666533 36788999999999986 669999999999999999997 567788899999
Q ss_pred CEEecccCCCC-Ccc
Q psy8923 72 TTLDLSHNNIK-QIP 85 (273)
Q Consensus 72 ~~L~Ls~N~l~-~ip 85 (273)
+.|+|++|+++ ..+
T Consensus 129 ~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 129 TSLNLASNPFNCNCH 143 (192)
T ss_dssp CEEECTTCCBCCSGG
T ss_pred CEEEeCCCCccCcCc
Confidence 99999999999 554
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.06 E-value=3.9e-10 Score=95.28 Aligned_cols=66 Identities=33% Similarity=0.452 Sum_probs=33.4
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhh
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
+|++|+|++|+|+.+| ..|..+++|+.|+|++|+|+. +|..++ .+++|+.|+|++|+|+.+|..++
T Consensus 125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~ 192 (290)
T 1p9a_G 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFF 192 (290)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccChhhc
Confidence 3444555555555544 334455555555555555554 444332 45555555555555555555444
No 46
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=2.7e-10 Score=105.04 Aligned_cols=67 Identities=25% Similarity=0.245 Sum_probs=60.7
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCC-CccccCCCCCCEEecccCCCCCccchhhh
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGI-PVDLFHLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~i-p~~~~~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
+|+.|+|++|.|++|| .|+.|++|+.|+|++|+|++ .. |..+..+++|+.|+|++|+|+.+|+.+..
T Consensus 487 ~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 487 CLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp TCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred CCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 6788999999999999 89999999999999999998 33 89999999999999999999988775544
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.05 E-value=9.5e-11 Score=100.10 Aligned_cols=87 Identities=22% Similarity=0.322 Sum_probs=55.2
Q ss_pred CCCccccCCCCCceecC-----------------CCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccc
Q psy8923 4 FEPGTFCMASKSESVTI-----------------GLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDL 65 (273)
Q Consensus 4 ~~p~~~~~~~~l~~~~l-----------------~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~ 65 (273)
.+|..|+.+++|+.+.+ ++|++|+|++|.|++ +|..|..+++|++|+|++|++++ .+|..+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~ 145 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSI 145 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHH
Confidence 56666666666644321 245667777777764 56666677777777777777763 466666
Q ss_pred cCCCCCCEEecccCCCC-Cccchhhhh
Q psy8923 66 FHLEDLTTLDLSHNNIK-QIPDALENA 91 (273)
Q Consensus 66 ~~l~~L~~L~Ls~N~l~-~ip~~l~~w 91 (273)
..+++|++|+|++|+++ .+|..+..+
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhh
Confidence 66777777777777776 666655543
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.04 E-value=4.4e-10 Score=96.60 Aligned_cols=69 Identities=22% Similarity=0.137 Sum_probs=61.8
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchhhh
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALEN 90 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~ 90 (273)
++|++|+|++|.|+++|+.++.+++|+.|+|++|++.+ .+|..+.++++|+.|+|++|++. .+|..+..
T Consensus 206 ~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp TTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred CCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 37788999999999999899999999999999999885 79999999999999999998877 88877654
No 49
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.04 E-value=5e-10 Score=90.71 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=30.6
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCc
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQI 84 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~i 84 (273)
+|++|+|++|.|++++ ..|..+++|+.|+|++|+|++ +|.. +.++++|+.|+|++|+|+.+
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN--VQHKMFKGLESLKTLMLRSNRITCV 120 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCGGGGTTCSSCCEEECTTSCCCCB
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc--cCHhHhcCCcCCCEEECCCCcCCeE
Confidence 3444555555555543 345555555555555555554 3332 33555555555555555544
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.02 E-value=1.2e-09 Score=91.35 Aligned_cols=64 Identities=34% Similarity=0.543 Sum_probs=41.6
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccch
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
+|++|+|++|.|+++| ..|+.+++|++|+|++|++++ +|.. +..+++|+.|+|++|+++.+|..
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc--cCHHHhccCccCCEEECCCCCcCccCHH
Confidence 4566777777777765 446667777777777777775 5444 34667777777777777765553
No 51
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.02 E-value=2.1e-10 Score=108.87 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=69.7
Q ss_pred CCCccccCCCCCceecC---------------CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCC
Q psy8923 4 FEPGTFCMASKSESVTI---------------GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHL 68 (273)
Q Consensus 4 ~~p~~~~~~~~l~~~~l---------------~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l 68 (273)
.+|..++.+++|+.+.+ ++|++|+|++|.|+.||..|+.|++|++|+|++|.|+. ||..+.+|
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l 315 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNL 315 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSC
T ss_pred CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc--cChhhhcC
Confidence 35555555555555432 26688999999999999999999999999999999998 99999999
Q ss_pred CCCCEEecccCCCC-Cccchhh
Q psy8923 69 EDLTTLDLSHNNIK-QIPDALE 89 (273)
Q Consensus 69 ~~L~~L~Ls~N~l~-~ip~~l~ 89 (273)
++|+.|+|++|+|+ .+|..+.
T Consensus 316 ~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp TTCCCEECTTSCCCSHHHHHHH
T ss_pred CCccEEeCCCCccCCCChHHHh
Confidence 99999999999999 5565553
No 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.01 E-value=4.9e-10 Score=97.58 Aligned_cols=66 Identities=29% Similarity=0.256 Sum_probs=35.7
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchh
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDAL 88 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l 88 (273)
+|++|+|++|+|+.+| ..|..+++|+.|+|++|+|+. ..|..+.++++|+.|+|++|+|+.+|..+
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 4455555555555554 345555555555555555554 22334445555666666666655555543
No 53
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.01 E-value=1.4e-09 Score=90.79 Aligned_cols=64 Identities=28% Similarity=0.452 Sum_probs=49.2
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccch
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
+|++|+|++|.|+.+| ..|..+++|++|+|++|+|+. +|.. +..+++|+.|+|++|+++.+|..
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc--cCHhHccCCcccceeEecCCcCcEeChh
Confidence 6778888888888876 557788888888888888887 6655 45778888888888888877664
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.01 E-value=9.9e-10 Score=92.23 Aligned_cols=83 Identities=25% Similarity=0.398 Sum_probs=59.6
Q ss_pred CccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccC
Q psy8923 6 PGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFH 67 (273)
Q Consensus 6 p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~ 67 (273)
|..|..+++|+.+.+ ++|++|+|++|.|+.+| ..|..+++|+.|+|++|+++. +|.. +..
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~ 175 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRG 175 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--ECTTTTTT
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc--cCHHHhcC
Confidence 556666666665532 36778888888888876 457888888888888888887 6654 567
Q ss_pred CCCCCEEecccCCCCCc-cchhhh
Q psy8923 68 LEDLTTLDLSHNNIKQI-PDALEN 90 (273)
Q Consensus 68 l~~L~~L~Ls~N~l~~i-p~~l~~ 90 (273)
+++|+.|+|++|+++.+ |..+..
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~~~~ 199 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVHPHAFRD 199 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTT
T ss_pred ccccCEEECCCCcccccCHhHccC
Confidence 88888888888888855 444443
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.99 E-value=8.2e-10 Score=98.72 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=49.8
Q ss_pred CCCCccccCCCCCceecC----------------CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccc
Q psy8923 3 GFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL 65 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~ 65 (273)
+.+|..|+.+++|+.+.+ ++|++|+|++|.|+++ |..|..+++|+.|+|++|+++. ..|..+
T Consensus 289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~ 367 (455)
T 3v47_A 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSF 367 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE-ECTTTT
T ss_pred ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc-cChhhc
Confidence 345666777776655432 2556666666666654 3556666666666666666665 334555
Q ss_pred cCCCCCCEEecccCCCCCccch
Q psy8923 66 FHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 66 ~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
.++++|+.|+|++|+++.+|..
T Consensus 368 ~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 368 LGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp TTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccccEEECCCCccccCCHh
Confidence 5666666666666666655553
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.98 E-value=9.6e-10 Score=101.93 Aligned_cols=89 Identities=21% Similarity=0.172 Sum_probs=64.3
Q ss_pred CccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc-hhhhhhhcccccc
Q psy8923 22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD-ALENAKRTKATLD 99 (273)
Q Consensus 22 ~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~-~l~~w~g~~~~~~ 99 (273)
+|++|+|++|+|+++ |..|.+|++|+.|+|++|+|++ ..|..+.++++|+.|+|++|+|+.++. .+..+......++
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB-CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC-CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence 568899999999997 5789999999999999999997 334456689999999999999996654 4443322223333
Q ss_pred hhccccccccch
Q psy8923 100 KRACSAIHAVNL 111 (273)
Q Consensus 100 ~~~~~~l~~~~L 111 (273)
..+++..|..++
T Consensus 574 L~~Np~~C~C~~ 585 (635)
T 4g8a_A 574 LTQNDFACTCEH 585 (635)
T ss_dssp CTTCCBCCSGGG
T ss_pred eeCCCCcccCCc
Confidence 334444444444
No 57
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.97 E-value=6.3e-10 Score=85.99 Aligned_cols=64 Identities=31% Similarity=0.318 Sum_probs=57.8
Q ss_pred CCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCC--ccccCCCCCCEEecccCCCCCccc
Q psy8923 21 GLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIP--VDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip--~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++|++|+|++|.|++ +|..+..+++|++|+|++|+++. +| ..+..+++|+.|++++|+++.+|.
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS--SGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc--chhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 455889999999999 77888889999999999999998 77 678899999999999999998886
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.97 E-value=2.2e-09 Score=89.49 Aligned_cols=64 Identities=31% Similarity=0.472 Sum_probs=43.7
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccch
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
+|++|+|++|.|+.+| ..|..+++|++|+|++|+++. +|... ..+++|+.|+|++|+++.+|..
T Consensus 62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 127 (270)
T 2o6q_A 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA--LPIGVFDQLVNLAELRLDRNQLKSLPPR 127 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC--CCTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc--CCHhHcccccCCCEEECCCCccCeeCHH
Confidence 4566777777777776 445677777777777777776 55443 4677777777777777766653
No 59
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.97 E-value=9e-10 Score=95.89 Aligned_cols=83 Identities=27% Similarity=0.390 Sum_probs=70.5
Q ss_pred CCCCccccCCCCCceecC----------------CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccc
Q psy8923 3 GFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL 65 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~ 65 (273)
+..|..|..+++|+.+.+ ++|++|+|++|.|+.+ |..|..+++|+.|+|++|+|+. +|..+
T Consensus 78 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~ 155 (361)
T 2xot_A 78 FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR--FPVEL 155 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS--CCGGG
T ss_pred ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe--eCHHH
Confidence 344567888888877643 3889999999999998 5889999999999999999998 99876
Q ss_pred c----CCCCCCEEecccCCCCCccch
Q psy8923 66 F----HLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 66 ~----~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
+ .+++|+.|+|++|+|+.+|..
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHH
T ss_pred hcCcccCCcCCEEECCCCCCCccCHH
Confidence 4 689999999999999999853
No 60
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=6.9e-10 Score=86.57 Aligned_cols=62 Identities=31% Similarity=0.408 Sum_probs=37.1
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccc
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
+|++|+|++|.|+++ +.|+.+++|++|+|++|+|+. +|+.+ ..+++|+.|+|++|+++.+|.
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~ 105 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSLVELGD 105 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccc--cCcchhhcCCCCCEEECCCCcCCcchh
Confidence 455566666666655 455566666666666666665 55444 456666666666666665554
No 61
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.95 E-value=9e-10 Score=102.08 Aligned_cols=65 Identities=26% Similarity=0.290 Sum_probs=30.1
Q ss_pred CccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccch
Q psy8923 22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 22 ~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
+|+.|+|++|.|+++ |..|..+++|+.|+|++|++++ .+|..+.++++|+.|+|++|+|+.+|..
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-EEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC-cCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 344444444444443 2344444444444444444443 2244444444444444444444444443
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.94 E-value=3.6e-10 Score=105.70 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=69.1
Q ss_pred CCCCCccccCCCCCceecCCCccEEEccCCCCCC------------------chhhhc--CCccCCEeeccCCcCccCCC
Q psy8923 2 VGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK------------------LFGELT--ELQCLRTLNLRYNKIKNSGI 61 (273)
Q Consensus 2 ~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~------------------lp~~~~--~l~~L~~L~l~~N~l~~~~i 61 (273)
+| +|..|+++++| ++|+|++|.|++ +|..++ ++++|++|+|++|++.+ .+
T Consensus 196 ~~-ip~~l~~l~~L--------~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-~~ 265 (636)
T 4eco_A 196 TF-VSKAVMRLTKL--------RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-KL 265 (636)
T ss_dssp EE-ECGGGGGCTTC--------CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-SC
T ss_pred cc-CCHHHhcccCC--------CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-cC
Confidence 35 78888888777 669999999999 999888 99999999999999885 89
Q ss_pred CccccCCCCCCEEecccCC-CC--Cccchhhhh
Q psy8923 62 PVDLFHLEDLTTLDLSHNN-IK--QIPDALENA 91 (273)
Q Consensus 62 p~~~~~l~~L~~L~Ls~N~-l~--~ip~~l~~w 91 (273)
|..++++++|+.|+|++|+ ++ .+|..++.+
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L 298 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHHHhh
Confidence 9999999999999999998 88 488877764
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.94 E-value=6.4e-10 Score=94.94 Aligned_cols=75 Identities=23% Similarity=0.206 Sum_probs=37.0
Q ss_pred CCCCccccCCCCCceecCCCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCC
Q psy8923 3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l 81 (273)
|.+|..|+.++ | ++|+|++|.|++ +|..|..+++|+.|+|++|++++ .++.+..+++|+.|+|++|++
T Consensus 188 ~~~~~~~~~l~-L--------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 188 GKIPPTFANLN-L--------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF--DLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp EECCGGGGGCC-C--------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC--BGGGCCCCTTCCEEECCSSCC
T ss_pred ccCChHHhCCc-c--------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee--ecCcccccCCCCEEECcCCcc
Confidence 45677776664 4 335555555543 23444455555555555555543 222344445555555555555
Q ss_pred C-Cccchh
Q psy8923 82 K-QIPDAL 88 (273)
Q Consensus 82 ~-~ip~~l 88 (273)
+ .+|..+
T Consensus 257 ~~~~p~~l 264 (313)
T 1ogq_A 257 YGTLPQGL 264 (313)
T ss_dssp EECCCGGG
T ss_pred cCcCChHH
Confidence 4 444433
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.93 E-value=4.4e-09 Score=88.26 Aligned_cols=83 Identities=27% Similarity=0.385 Sum_probs=70.2
Q ss_pred CCCCccccCCCCCceecC-----------------CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCcc
Q psy8923 3 GFEPGTFCMASKSESVTI-----------------GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVD 64 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l-----------------~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~ 64 (273)
+..|..|+.+++|+.+.+ ++|++|+|++|.|+++ |..|..+++|++|++++|+++. +|..
T Consensus 70 ~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~ 147 (285)
T 1ozn_A 70 RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA--LPDD 147 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTT
T ss_pred eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc--cCHh
Confidence 445777887777776533 4899999999999997 4789999999999999999998 6655
Q ss_pred -ccCCCCCCEEecccCCCCCccch
Q psy8923 65 -LFHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 65 -~~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
+..+++|+.|+|++|+++.+|..
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTT
T ss_pred HhccCCCccEEECCCCcccccCHH
Confidence 66899999999999999988874
No 65
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.93 E-value=4.1e-10 Score=105.29 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=53.5
Q ss_pred CCCCchhhhcCCccCCEeeccCCcCccCC-----------------CCcccc--CCCCCCEEecccCCCC-Cccchhhhh
Q psy8923 32 NLEKLFGELTELQCLRTLNLRYNKIKNSG-----------------IPVDLF--HLEDLTTLDLSHNNIK-QIPDALENA 91 (273)
Q Consensus 32 ~l~~lp~~~~~l~~L~~L~l~~N~l~~~~-----------------ip~~~~--~l~~L~~L~Ls~N~l~-~ip~~l~~w 91 (273)
.|++||..|+++++|++|+|++|++++ . +|..++ ++++|++|+|++|+++ .+|..+..+
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCccCCHHHhcccCCCEEECcCCcccc-ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 455689999999999999999999995 6 999999 9999999999999988 899877764
Q ss_pred h
Q psy8923 92 K 92 (273)
Q Consensus 92 ~ 92 (273)
.
T Consensus 273 ~ 273 (636)
T 4eco_A 273 P 273 (636)
T ss_dssp S
T ss_pred C
Confidence 3
No 66
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=1.2e-09 Score=105.26 Aligned_cols=66 Identities=26% Similarity=0.312 Sum_probs=35.5
Q ss_pred CccEEEccCCCCCCchh--hhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923 22 LTEHLSIVNNNLEKLFG--ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~--~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
+|++|+|++|.|+.||. .|+++++|+.|+|++|+++. +| .+..+++|+.|+|++|+++.+|..+..
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~--lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~ 616 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LE-AFGTNVKLTDLKLDYNQIEEIPEDFCA 616 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB--CC-CCCTTSEESEEECCSSCCSCCCTTSCE
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc--ch-hhcCCCcceEEECcCCccccchHHHhh
Confidence 35555555555555554 55555555555555555554 55 445555555555555555555544433
No 67
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.93 E-value=3.7e-09 Score=84.56 Aligned_cols=84 Identities=25% Similarity=0.414 Sum_probs=69.3
Q ss_pred CCCCccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-
Q psy8923 3 GFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD- 64 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~- 64 (273)
+..|..|..+++|+.+.+ ++|++|+|++|.|+++| ..|..+++|++|+|++|+|+. +|..
T Consensus 42 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~ 119 (208)
T 2o6s_A 42 SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS--LPDGV 119 (208)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTT
T ss_pred cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc--cCHhH
Confidence 344555677777766643 37899999999999987 558999999999999999998 7765
Q ss_pred ccCCCCCCEEecccCCCCCccchh
Q psy8923 65 LFHLEDLTTLDLSHNNIKQIPDAL 88 (273)
Q Consensus 65 ~~~l~~L~~L~Ls~N~l~~ip~~l 88 (273)
+..+++|+.|+|++|+++.+|...
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTT
T ss_pred hccCCcCCEEECCCCccceeCHHH
Confidence 568999999999999999888754
No 68
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.92 E-value=2.9e-09 Score=82.96 Aligned_cols=76 Identities=29% Similarity=0.462 Sum_probs=62.4
Q ss_pred CCCccccCCCCCceecCCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCC
Q psy8923 4 FEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNI 81 (273)
Q Consensus 4 ~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l 81 (273)
..|..|+.+++| ++|+|++|.|+++| ..|..+++|+.|+|++|+|++ +|.. +..+++|+.|+|++|++
T Consensus 43 ~~~~~~~~l~~L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 43 LPHGVFDKLTQL--------TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS--LPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp CCTTTTTTCTTC--------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCC
T ss_pred eCHHHhcCcccc--------cEEECCCCcceEeChhHccCCCccCEEECCCCCccc--cCHHHhhCCcccCEEECcCCcc
Confidence 334445565555 77999999999987 557999999999999999998 7665 56899999999999999
Q ss_pred CCccchhh
Q psy8923 82 KQIPDALE 89 (273)
Q Consensus 82 ~~ip~~l~ 89 (273)
+.+|..++
T Consensus 113 ~~~~~~~~ 120 (177)
T 2o6r_A 113 KSVPDGIF 120 (177)
T ss_dssp SCCCTTTT
T ss_pred eEeCHHHh
Confidence 99887654
No 69
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=1.7e-09 Score=93.41 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=63.8
Q ss_pred CCCCccccCCCCCceecCCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCC
Q psy8923 3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l 81 (273)
+..|..|+.+++| ++|+|++|+|+++| ..|.+|++|+.|+|++|+|+. +|..++....|+.|+|++|+|
T Consensus 46 ~~~~~~~~~l~~L--------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 46 HLELRDLRGLGEL--------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES--LSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp EECGGGSCSCCCC--------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC--CCSTTTCSCCCCEEECCSSCC
T ss_pred CcChhHhccccCC--------CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce--eCHHHcccCCceEEEeeCCCc
Confidence 3445566666666 67999999999986 689999999999999999998 888877555599999999999
Q ss_pred CCccc--hhhhhh
Q psy8923 82 KQIPD--ALENAK 92 (273)
Q Consensus 82 ~~ip~--~l~~w~ 92 (273)
..... .+..|.
T Consensus 116 ~c~c~l~~~~~~~ 128 (347)
T 2ifg_A 116 HCSCALRWLQRWE 128 (347)
T ss_dssp CCCGGGHHHHHHH
T ss_pred cCCCccHHHHHHH
Confidence 94433 344454
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.90 E-value=4.7e-09 Score=87.67 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=42.9
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
+|++|+|++|.|+.++ ..|..+++|++|+|++|+++. ..|..+.++++|+.|++++|+++.++.
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~ 117 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLEN 117 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-cChhhhcCCccccEEECCCCCccccCc
Confidence 4566777777777765 467777777777777777776 223455567777777777777765554
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.90 E-value=1.1e-09 Score=93.25 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=31.1
Q ss_pred CccEEEccCCCCCCchh----hhcCCccCCEeeccCCcCccCCCCccccCC---CCCCEEecccCCCCCccc
Q psy8923 22 LTEHLSIVNNNLEKLFG----ELTELQCLRTLNLRYNKIKNSGIPVDLFHL---EDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~----~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l---~~L~~L~Ls~N~l~~ip~ 86 (273)
+|++|+|++|+|+.+|. .++.+++|++|+|++|+|++ .+|..+..+ ++|+.|+|++|+|+.+|.
T Consensus 198 ~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 268 (310)
T 4glp_A 198 AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLEQVPK 268 (310)
T ss_dssp CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCCSCCS
T ss_pred CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCCchhh
Confidence 34445555555544432 13444555555555555554 224444433 355555555555555544
No 72
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.89 E-value=1.3e-09 Score=82.49 Aligned_cols=66 Identities=26% Similarity=0.275 Sum_probs=58.8
Q ss_pred CCccEEEccCCCCC--CchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCC-ccchhh
Q psy8923 21 GLTEHLSIVNNNLE--KLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ-IPDALE 89 (273)
Q Consensus 21 ~~l~~L~l~~N~l~--~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~-ip~~l~ 89 (273)
++|+.|++++|.++ .+|..+..+++|+.|++++|.++. + ..+..+++|+.|+|++|+++. +|..+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 56788999999999 689989999999999999999998 6 778899999999999999996 776544
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.89 E-value=2.5e-09 Score=91.74 Aligned_cols=86 Identities=26% Similarity=0.343 Sum_probs=62.3
Q ss_pred CCCccccCCCCCceecC-------------CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCC
Q psy8923 4 FEPGTFCMASKSESVTI-------------GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLE 69 (273)
Q Consensus 4 ~~p~~~~~~~~l~~~~l-------------~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~ 69 (273)
..|..+..+++|+.+.+ ++|++|+|++|.|+++ |..|..+++|+.|+|++|+++. ..|..+..++
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~ 240 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTP 240 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGST
T ss_pred cChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhccCCC
Confidence 45666777777766543 3677888888888876 4778888888888888888886 3333566788
Q ss_pred CCCEEecccCCCCCccchhhh
Q psy8923 70 DLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 70 ~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
+|+.|+|++|+++.+|..+..
T Consensus 241 ~L~~L~L~~N~l~~lp~~l~~ 261 (330)
T 1xku_A 241 HLRELHLNNNKLVKVPGGLAD 261 (330)
T ss_dssp TCCEEECCSSCCSSCCTTTTT
T ss_pred CCCEEECCCCcCccCChhhcc
Confidence 888888888888887776543
No 74
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.89 E-value=3.3e-09 Score=98.22 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=38.2
Q ss_pred CccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCC-ccccCCCCCCEEecccCCCC--Cccchhhh
Q psy8923 22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIP-VDLFHLEDLTTLDLSHNNIK--QIPDALEN 90 (273)
Q Consensus 22 ~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip-~~~~~l~~L~~L~Ls~N~l~--~ip~~l~~ 90 (273)
+|++|+|++|.|+++ |..|+++++|++|+|++|.++. +| ..+.++++|++|+|++|+++ .+|..+..
T Consensus 81 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~ 151 (606)
T 3vq2_A 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS--LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151 (606)
T ss_dssp TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC--SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT
T ss_pred hcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc--ccccccCCCCCCCEEeCCCCcccceechHhHhh
Confidence 455566666666654 4556666666666666666654 33 44556666666666666665 34554443
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.88 E-value=9.8e-10 Score=99.55 Aligned_cols=77 Identities=26% Similarity=0.336 Sum_probs=51.5
Q ss_pred CCCCccccCCCCCceecCCCccEEEccCCCCCCc-hhhhc-CCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCC
Q psy8923 3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKL-FGELT-ELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~l-p~~~~-~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~ 80 (273)
|..|..|+.+++| ++|+|++|.|+++ |..+. .+++|+.|+|++|.|++ +|. ...+++|+.|+|++|+
T Consensus 134 ~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~--~~~-~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 134 MLRDLDEGCRSRV--------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNK 202 (487)
T ss_dssp SGGGBCGGGGSSE--------EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSC
T ss_pred CCCchhhcCCCCC--------CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc--ccc-cccCCCCCEEECCCCC
Confidence 3344455554444 6688888888874 55554 67788888888888876 543 3357777888888887
Q ss_pred CCCccchhhh
Q psy8923 81 IKQIPDALEN 90 (273)
Q Consensus 81 l~~ip~~l~~ 90 (273)
|+.+|..+..
T Consensus 203 l~~~~~~~~~ 212 (487)
T 3oja_A 203 LAFMGPEFQS 212 (487)
T ss_dssp CCEECGGGGG
T ss_pred CCCCCHhHcC
Confidence 7777665543
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.88 E-value=3e-09 Score=94.99 Aligned_cols=81 Identities=22% Similarity=0.281 Sum_probs=57.7
Q ss_pred cccCCCCCceecC--------------CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCC
Q psy8923 8 TFCMASKSESVTI--------------GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLT 72 (273)
Q Consensus 8 ~~~~~~~l~~~~l--------------~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~ 72 (273)
.|..+++|+.+.+ ++|+.|+|++|.|+++ |..|.++++|+.|+|++|+|+. ..|..+.++++|+
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLV 258 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTCC
T ss_pred hhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE-EChhhhcCCCCCC
Confidence 4556666655533 3677788888888876 4777888888888888888876 3344566788888
Q ss_pred EEecccCCCCCccchhh
Q psy8923 73 TLDLSHNNIKQIPDALE 89 (273)
Q Consensus 73 ~L~Ls~N~l~~ip~~l~ 89 (273)
.|+|++|+|+.+|...+
T Consensus 259 ~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLF 275 (440)
T ss_dssp EEECTTSCCCCCCTTTT
T ss_pred EEECCCCCCCccChhHh
Confidence 88888888887776544
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.88 E-value=1.2e-09 Score=99.05 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=49.8
Q ss_pred CCCCCcccc-CCCCCceecCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCC
Q psy8923 2 VGFEPGTFC-MASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80 (273)
Q Consensus 2 ~g~~p~~~~-~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~ 80 (273)
+|.+|..++ .+++| ++|+|++|.|+++|+. ..+++|+.|+|++|+|++ +|+.+..+++|+.|+|++|+
T Consensus 157 ~~~~~~~l~~~l~~L--------~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 157 DTVNFAELAASSDTL--------EHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CEEEGGGGGGGTTTC--------CEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSC
T ss_pred CCcChHHHhhhCCcc--------cEEecCCCcccccccc-ccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCc
Confidence 344555554 45555 5577777777766532 246777777777777776 66666677777777777777
Q ss_pred CCCccchhh
Q psy8923 81 IKQIPDALE 89 (273)
Q Consensus 81 l~~ip~~l~ 89 (273)
|+.+|..+.
T Consensus 226 l~~lp~~l~ 234 (487)
T 3oja_A 226 LVLIEKALR 234 (487)
T ss_dssp CCEECTTCC
T ss_pred Ccccchhhc
Confidence 776666543
No 78
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.88 E-value=3.1e-09 Score=94.95 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=73.9
Q ss_pred CCCCCccccCCCCCceecC----------------CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCcc
Q psy8923 2 VGFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVD 64 (273)
Q Consensus 2 ~g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~ 64 (273)
.+..|..|+.+++|+.+.+ ++|++|+|++|+|+++ |..|..+++|++|+|++|+|++ +|..
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~ 389 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS--VPDG 389 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC--CCTT
T ss_pred cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc--CCHh
Confidence 3445777777777777643 3889999999999997 6889999999999999999998 7775
Q ss_pred c-cCCCCCCEEecccCCCC-Cccc--hhhhhhh
Q psy8923 65 L-FHLEDLTTLDLSHNNIK-QIPD--ALENAKR 93 (273)
Q Consensus 65 ~-~~l~~L~~L~Ls~N~l~-~ip~--~l~~w~g 93 (273)
+ ..+++|+.|+|++|+++ .+|. .+..|..
T Consensus 390 ~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 422 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 422 (455)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred HhccCCcccEEEccCCCcccCCCcchHHHHHHH
Confidence 5 58999999999999999 7773 3445653
No 79
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.88 E-value=1.1e-09 Score=85.38 Aligned_cols=65 Identities=22% Similarity=0.141 Sum_probs=59.1
Q ss_pred CCccEEEccCCCCCCchh-hhcCCccCCEeeccCCcCccCCCCc--cccCCCCCCEEecccCCCCCccch
Q psy8923 21 GLTEHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIPV--DLFHLEDLTTLDLSHNNIKQIPDA 87 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~-~~~~l~~L~~L~l~~N~l~~~~ip~--~~~~l~~L~~L~Ls~N~l~~ip~~ 87 (273)
++|++|+|++|.|+++|+ .|..+++|++|+|++|+|+. +|. .+..+++|+.|++++|+++.+|..
T Consensus 64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~ 131 (176)
T 1a9n_A 64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHY 131 (176)
T ss_dssp SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTH
T ss_pred CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCCCcHhH
Confidence 478999999999999984 45999999999999999988 887 788999999999999999988874
No 80
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=98.87 E-value=1.6e-09 Score=76.95 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=35.5
Q ss_pred CCCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923 235 KAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273 (273)
Q Consensus 235 ~~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~ 273 (273)
..++.||||||++.+||+|+|++|+..||..|.++|+++
T Consensus 25 sLns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 25 SFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp GCCTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999763
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.87 E-value=6.7e-09 Score=86.67 Aligned_cols=85 Identities=26% Similarity=0.465 Sum_probs=69.6
Q ss_pred CCCCCccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc
Q psy8923 2 VGFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD 64 (273)
Q Consensus 2 ~g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~ 64 (273)
.+..|..|+.+++|+.+.+ ++|++|+|++|.|+++| ..|+.+++|+.|++++|++++ +|..
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~ 175 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--LPEG 175 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTT
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc--cCHH
Confidence 3455556777777776633 37899999999999987 567999999999999999998 6655
Q ss_pred -ccCCCCCCEEecccCCCCCccchh
Q psy8923 65 -LFHLEDLTTLDLSHNNIKQIPDAL 88 (273)
Q Consensus 65 -~~~l~~L~~L~Ls~N~l~~ip~~l 88 (273)
+..+++|+.|+|++|+++.+|...
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGV 200 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred HhcCCccCCEEECCCCcCCccCHHH
Confidence 568999999999999999877643
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.87 E-value=2.7e-09 Score=91.45 Aligned_cols=66 Identities=26% Similarity=0.295 Sum_probs=60.8
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
+|+.|+|++|.|++++ ..+..+++|+.|+|++|+++. +|..+..+++|+.|+|++|+++.+|...+
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--CChhhccCCCcCEEECCCCcCCccChhhc
Confidence 5578999999999986 689999999999999999998 99999999999999999999999987654
No 83
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.87 E-value=5.2e-09 Score=88.68 Aligned_cols=64 Identities=28% Similarity=0.376 Sum_probs=42.6
Q ss_pred CccEEEccCCCCCC--chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 22 LTEHLSIVNNNLEK--LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~--lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
+|++|+|++|.+++ +|..+..+++|+.|+|++|+++. ..|..+..+++|+.|+|++|+++.++.
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCccCccCh
Confidence 55667777777765 46666777777777777777765 335555666777777777777766554
No 84
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=9.4e-10 Score=105.95 Aligned_cols=79 Identities=18% Similarity=0.200 Sum_probs=65.9
Q ss_pred CCccccCCCCCceecCCCccEEEccCCCCCC------------------chhhhc--CCccCCEeeccCCcCccCCCCcc
Q psy8923 5 EPGTFCMASKSESVTIGLTEHLSIVNNNLEK------------------LFGELT--ELQCLRTLNLRYNKIKNSGIPVD 64 (273)
Q Consensus 5 ~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~------------------lp~~~~--~l~~L~~L~l~~N~l~~~~ip~~ 64 (273)
+|..|+++++| ++|+|++|+|++ ||..++ +|++|+.|+|++|++.+ .+|..
T Consensus 440 IP~~l~~L~~L--------~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~ 510 (876)
T 4ecn_A 440 ISKAIQRLTKL--------QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT-QLPDF 510 (876)
T ss_dssp ECGGGGGCTTC--------CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC-SCCGG
T ss_pred hhHHHhcCCCC--------CEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc-cChHH
Confidence 78888888777 559999999998 888877 89999999999998885 78888
Q ss_pred ccCCCCCCEEecccCC-CCC--ccchhhhhh
Q psy8923 65 LFHLEDLTTLDLSHNN-IKQ--IPDALENAK 92 (273)
Q Consensus 65 ~~~l~~L~~L~Ls~N~-l~~--ip~~l~~w~ 92 (273)
+.++++|+.|+|++|+ ++. +|..+..+.
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~ 541 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLA 541 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhh
Confidence 8899999999999998 874 888776653
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.86 E-value=7.3e-09 Score=97.30 Aligned_cols=85 Identities=29% Similarity=0.413 Sum_probs=62.6
Q ss_pred CCCCccccCCCCCceec----------------CCCccEEEccCCCCCCch---------hhhcCCccCCEeeccCCcCc
Q psy8923 3 GFEPGTFCMASKSESVT----------------IGLTEHLSIVNNNLEKLF---------GELTELQCLRTLNLRYNKIK 57 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~----------------l~~l~~L~l~~N~l~~lp---------~~~~~l~~L~~L~l~~N~l~ 57 (273)
|.+|..|+.+++|+.+. +++|++|+|++|+|++++ ..|..+++|+.|+|++|+++
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence 55677777777766652 246788888888888753 12677888888888888888
Q ss_pred cCCCCcc-ccCCCCCCEEecccCCCCCccchhh
Q psy8923 58 NSGIPVD-LFHLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 58 ~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
. +|.. +.++++|+.|+|++|+|+.+|...+
T Consensus 550 ~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 550 E--IPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp C--CCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred C--CCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 7 7764 5578888888888888888877654
No 86
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.86 E-value=1.3e-09 Score=93.01 Aligned_cols=65 Identities=28% Similarity=0.392 Sum_probs=36.2
Q ss_pred CccEEEccCCCCCCch-hhh-cCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923 22 LTEHLSIVNNNLEKLF-GEL-TELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~-~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
+|++|+|++|.|+.++ ..+ ..+++|++|+|++|+++. +|.. ..+++|+.|+|++|+++.+|..+.
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~ 211 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQ-VVFAKLKTLDLSSNKLAFMGPEFQ 211 (317)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EECC-CCCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc--cccc-cccccCCEEECCCCcCCcchhhhc
Confidence 4455666666666643 333 355666666666666665 4332 235566666666666665555433
No 87
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.85 E-value=4.5e-09 Score=94.13 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=53.5
Q ss_pred CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923 21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
++|+.|+|++|.|+++ |..|.++++|+.|+|++|+++. ..|..+.++++|+.|+|++|+|+.+|...+
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 3678888888888886 5778888888888888888886 445566688888888888888888876544
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.85 E-value=1.9e-09 Score=92.07 Aligned_cols=67 Identities=25% Similarity=0.316 Sum_probs=50.6
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
++|++|+|++|.|+.+|... .+++|+.|+|++|+|++ +|..+..+++|+.|+|++|+++.+|..+..
T Consensus 169 ~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 235 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRF 235 (317)
T ss_dssp TTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred CcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCcccchhhHhhc
Confidence 46778888888888775332 47888888888888887 777777888888888888888877765543
No 89
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.85 E-value=3.7e-09 Score=90.77 Aligned_cols=67 Identities=24% Similarity=0.307 Sum_probs=39.2
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
+|+.|+|++|.|++++ ..|..+++|+.|+|++|+++. ..|..+..+++|+.|+|++|+++.+|..+.
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~ 261 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSRVPAGLP 261 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCCBCCTTGG
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCeecChhhh
Confidence 4455666666666654 556666666666666666665 222345566666666666666666665443
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.85 E-value=3e-09 Score=84.44 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=51.1
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchhh
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALE 89 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l~ 89 (273)
++|++|++++|.++.++ .+..+++|++|++++|+++. ..|..+..+++|+.|+|++|+++ ..|..+.
T Consensus 66 ~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~ 133 (197)
T 4ezg_A 66 HNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133 (197)
T ss_dssp TTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTCCEEECCSSBCBGGGHHHHT
T ss_pred CCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc-ccChhhcCCCCCCEEEecCCccCcHhHHHHh
Confidence 35677888888777665 67778888888888888885 56777788888888888888888 4555444
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.84 E-value=6.1e-09 Score=88.71 Aligned_cols=72 Identities=26% Similarity=0.337 Sum_probs=34.9
Q ss_pred CCCCccccCCCCCceecCCCccEEEccCCCCCC---chhhh--cCCccCCEeeccCCcCcc-CCCCccc-cCCCCCCEEe
Q psy8923 3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK---LFGEL--TELQCLRTLNLRYNKIKN-SGIPVDL-FHLEDLTTLD 75 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~---lp~~~--~~l~~L~~L~l~~N~l~~-~~ip~~~-~~l~~L~~L~ 75 (273)
+..|..|+.+++| ++|+|++|++++ +|..+ +.+++|+.|+|++|+|+. +.++..+ .++++|+.|+
T Consensus 163 ~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 163 NFSCEQVRVFPAL--------STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp CCCTTTCCCCSSC--------CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred cchHHHhccCCCC--------CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence 3444566666555 445555555544 23333 455555555555555552 0022222 2445555555
Q ss_pred cccCCCC
Q psy8923 76 LSHNNIK 82 (273)
Q Consensus 76 Ls~N~l~ 82 (273)
|++|+++
T Consensus 235 Ls~N~l~ 241 (312)
T 1wwl_A 235 LSHNSLR 241 (312)
T ss_dssp CTTSCCC
T ss_pred CCCCcCC
Confidence 5555555
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.84 E-value=6.5e-09 Score=86.79 Aligned_cols=85 Identities=20% Similarity=0.336 Sum_probs=69.7
Q ss_pred CCccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCc-ccc
Q psy8923 5 EPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPV-DLF 66 (273)
Q Consensus 5 ~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~ 66 (273)
.|..|..+++|+.+.+ ++|++|+|++|.|++++ ..|.++++|++|++++|+++. ++. .+.
T Consensus 44 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~ 121 (276)
T 2z62_A 44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIG 121 (276)
T ss_dssp CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC--STTCCCT
T ss_pred CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc--cCchhcc
Confidence 3456777777776643 37899999999999986 789999999999999999997 655 677
Q ss_pred CCCCCCEEecccCCCCC--ccchhhhh
Q psy8923 67 HLEDLTTLDLSHNNIKQ--IPDALENA 91 (273)
Q Consensus 67 ~l~~L~~L~Ls~N~l~~--ip~~l~~w 91 (273)
.+++|+.|+|++|+++. +|..+..+
T Consensus 122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred cCCCCCEEECcCCccceecCchhhccC
Confidence 99999999999999986 67766653
No 93
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.84 E-value=4.1e-09 Score=94.40 Aligned_cols=62 Identities=32% Similarity=0.403 Sum_probs=37.2
Q ss_pred ccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccc
Q psy8923 23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 23 l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
|++|+|++|.|++++ ..|.++++|++|+|++|+|+. +|.. +.++++|+.|+|++|+++.+|.
T Consensus 101 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~ 164 (452)
T 3zyi_A 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV--IPSGAFEYLSKLRELWLRNNPIESIPS 164 (452)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB--CCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred CCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc--cChhhhcccCCCCEEECCCCCcceeCH
Confidence 355666666666654 556666666666666666665 4443 3456666666666666665554
No 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.82 E-value=1.4e-08 Score=92.25 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=51.2
Q ss_pred CCCCCccccCCCCCceecCCCccEEEccCCCCCCc---hhhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecc
Q psy8923 2 VGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKL---FGELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLS 77 (273)
Q Consensus 2 ~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~l---p~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls 77 (273)
.+.+|..++.+++| ++|+|++|+|+++ |..++.+++|++|++++|++++ .+|.. +..+++|+.|+|+
T Consensus 337 ~~~~~~~~~~l~~L--------~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~-~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 337 TDTVFENCGHLTEL--------ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY-DEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp CTTTTTTCCCCSSC--------CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC-CGGGCSCCCCTTCCEEECC
T ss_pred ChhhhhhhccCCCC--------CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc-ccccchhccCccCCEEECc
Confidence 34456666666555 5677777877754 3567777778888887777774 56665 4466777777777
Q ss_pred cCCCC-Cccch
Q psy8923 78 HNNIK-QIPDA 87 (273)
Q Consensus 78 ~N~l~-~ip~~ 87 (273)
+|+++ .+|..
T Consensus 408 ~N~l~~~~~~~ 418 (520)
T 2z7x_B 408 SNILTDTIFRC 418 (520)
T ss_dssp SSCCCGGGGGS
T ss_pred CCCCCcchhhh
Confidence 77775 44443
No 95
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.82 E-value=7.5e-09 Score=96.00 Aligned_cols=62 Identities=26% Similarity=0.360 Sum_probs=33.3
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCcc
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip 85 (273)
+|++|+|++|.|+++| ..|+++++|++|+|++|.|+. +|..+ .++++|+.|+|++|+++.++
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 3355555555555554 344555555555555555555 55443 35555555555555555443
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.81 E-value=5e-09 Score=83.15 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=52.7
Q ss_pred CCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCC-CCCcc
Q psy8923 21 GLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN-IKQIP 85 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~-l~~ip 85 (273)
++|++|++++|.|+. .|..++.+++|++|+|++|+++. ..|..+..+++|+.|+|++|+ ++.+|
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG-GGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc-HhHHHHhhCCCCCEEEccCCCCccccH
Confidence 345779999999887 56788888999999999999885 567778888899999999987 77776
No 97
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.81 E-value=1.6e-10 Score=91.96 Aligned_cols=67 Identities=31% Similarity=0.366 Sum_probs=51.5
Q ss_pred cccCCCCCceecCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923 8 TFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 8 ~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
.|+.+++| ++|+|++|.|+.+| .+..+++|++|++++|+++. +|..+..+++|+.|+|++|+++.+|
T Consensus 43 ~~~~l~~L--------~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~ 109 (198)
T 1ds9_A 43 TLSTLKAC--------KHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLS 109 (198)
T ss_dssp HHHHTTTC--------SEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHH
T ss_pred HHhcCCCC--------CEEECCCCCCcccc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCC
Confidence 56655555 56888888888877 77778888888888888887 7776667778888888888888776
No 98
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.80 E-value=9.1e-09 Score=94.44 Aligned_cols=66 Identities=23% Similarity=0.395 Sum_probs=36.2
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCc-cccCCCCCCEEecccCCCCC--ccchhh
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPV-DLFHLEDLTTLDLSHNNIKQ--IPDALE 89 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~~l~~L~~L~Ls~N~l~~--ip~~l~ 89 (273)
+|++|+|++|.|+.+| ..|+++++|++|++++|+++. +|. .+.++++|++|+|++|+++. +|..+.
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~ 146 (570)
T 2z63_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (570)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC--STTCSCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred hCCEEeCcCCcCCccCHhhhcCcccccccccccccccc--CCCccccccccccEEecCCCccceecChhhhc
Confidence 4455555555555543 455555555555555555554 443 34555666666666666553 455444
No 99
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=98.80 E-value=2.6e-09 Score=77.14 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=36.2
Q ss_pred CCCCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923 234 PKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273 (273)
Q Consensus 234 ~~~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~ 273 (273)
...++.||||||++..||+|+|++|+..||..|.++|+.+
T Consensus 34 ssLns~D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i 73 (114)
T 1svq_A 34 SSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI 73 (114)
T ss_dssp SSCCTTSEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4456789999999999999999999999999999999753
No 100
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.79 E-value=5.2e-09 Score=95.18 Aligned_cols=55 Identities=31% Similarity=0.335 Sum_probs=29.7
Q ss_pred cEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 24 ~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
++|+|++|+|+++ |..|+++++|++|+|++|+|+. +|.. .+++|++|+|++|+++
T Consensus 48 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~L~~N~l~ 103 (520)
T 2z7x_B 48 RILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLDLSFNAFD 103 (520)
T ss_dssp CEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEECCSSCCS
T ss_pred cEEecCCCccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCccEEeccCCccc
Confidence 4455555555554 3455555555555555555554 5544 4555555555555555
No 101
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.78 E-value=8e-09 Score=92.98 Aligned_cols=60 Identities=25% Similarity=0.303 Sum_probs=25.5
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
+|++|+|++|.|+.+| ..|.++++|++|+|++|+++. ..|..+..+++|+.|+|++|+++
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~ 141 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLV 141 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCC
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccc
Confidence 3444444444444444 234444444444444444443 22233334444444444444443
No 102
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.77 E-value=1e-08 Score=94.25 Aligned_cols=64 Identities=31% Similarity=0.376 Sum_probs=35.2
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
+|++|+|++|.|+++| ..|.++++|++|+|++|+|++ ..|..+.++++|++|+|++|+|+.+|.
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 117 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQNISC 117 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCCEECS
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCCccCc
Confidence 4455555555555554 455555555555555555554 223444455555555555555555554
No 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.77 E-value=1.6e-08 Score=92.99 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=45.5
Q ss_pred CCCCCccccCCCCCceecC------------------CCccEEEccCCCCCC-ch-hhhcCCccCCEeeccCCcCccCCC
Q psy8923 2 VGFEPGTFCMASKSESVTI------------------GLTEHLSIVNNNLEK-LF-GELTELQCLRTLNLRYNKIKNSGI 61 (273)
Q Consensus 2 ~g~~p~~~~~~~~l~~~~l------------------~~l~~L~l~~N~l~~-lp-~~~~~l~~L~~L~l~~N~l~~~~i 61 (273)
.+.+|..++.+++|+.+.+ ++|++|+|++|.|++ +| ..+..+++|+.|+|++|++++ .+
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~ 444 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-SV 444 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-GG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-ch
Confidence 4456777777766655322 245556666666655 55 234444444444444444432 23
Q ss_pred CccccCCCCCCEEecccCCCCCccchhh
Q psy8923 62 PVDLFHLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 62 p~~~~~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
|..+. ++|+.|+|++|+++.||..++
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~~ip~~~~ 470 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIMSIPKDVT 470 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCCCCCTTTT
T ss_pred hhhhc--CcCCEEECCCCcCcccChhhc
Confidence 32221 466666666666666666555
No 104
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.77 E-value=1.1e-08 Score=91.39 Aligned_cols=63 Identities=32% Similarity=0.443 Sum_probs=41.2
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCc-cccCCCCCCEEecccCCCCCccc
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPV-DLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
+|++|+|++|.|+.++ ..|.++++|++|+|++|+|+. +|. .+..+++|+.|+|++|+++.+|.
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~ 153 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT--IPNGAFVYLSKLKELWLRNNPIESIPS 153 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS--CCTTTSCSCSSCCEEECCSCCCCEECT
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe--eCHhHhhccccCceeeCCCCcccccCH
Confidence 4456777777776654 566667777777777777765 554 34566777777777777666655
No 105
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.77 E-value=1.5e-08 Score=88.79 Aligned_cols=63 Identities=27% Similarity=0.380 Sum_probs=41.3
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccc
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
+|++|+|++|.|+++| ..|+++++|++|+|++|+++. +|..+ .++++|++|+|++|+++.++.
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcEEECCCCccCccCh
Confidence 4566777777777664 456667777777777777766 66554 466777777777777665543
No 106
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.76 E-value=8.6e-09 Score=87.77 Aligned_cols=72 Identities=24% Similarity=0.177 Sum_probs=44.4
Q ss_pred CCCCCccc--cCCCCCceecCCCccEEEccCCCCCCchhhhcCC-----ccCCEeeccCCcCccCCCCccccCCCCCCEE
Q psy8923 2 VGFEPGTF--CMASKSESVTIGLTEHLSIVNNNLEKLFGELTEL-----QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL 74 (273)
Q Consensus 2 ~g~~p~~~--~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l-----~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L 74 (273)
.|.+|..+ +.+++| ++|+|++|.|+++|..++.+ ++|++|+|++|++++ ..|..+..+++|+.|
T Consensus 108 ~~~~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L 178 (312)
T 1wwl_A 108 TGTAPPPLLEATGPDL--------NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTL 178 (312)
T ss_dssp BSCCCCCSSSCCSCCC--------SEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEE
T ss_pred cchhHHHHHHhcCCCc--------cEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEE
Confidence 34555554 444444 55777777776666555555 667777777777765 333555666777777
Q ss_pred ecccCCCC
Q psy8923 75 DLSHNNIK 82 (273)
Q Consensus 75 ~Ls~N~l~ 82 (273)
+|++|+++
T Consensus 179 ~Ls~N~l~ 186 (312)
T 1wwl_A 179 DLSDNPEL 186 (312)
T ss_dssp ECCSCTTC
T ss_pred ECCCCCcC
Confidence 77777655
No 107
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.76 E-value=1.4e-08 Score=95.31 Aligned_cols=82 Identities=26% Similarity=0.334 Sum_probs=57.1
Q ss_pred CCCCCccccCCCCCceecC----------------CCccEEEccCCCCCCchh-hhcCCccCCEeeccCCcCccCCCC-c
Q psy8923 2 VGFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIP-V 63 (273)
Q Consensus 2 ~g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp~-~~~~l~~L~~L~l~~N~l~~~~ip-~ 63 (273)
.+..|..|+.+++|+.+.+ ++|++|+|++|.|+.+|+ .|+++++|++|+|++|++++ +| .
T Consensus 38 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~ 115 (680)
T 1ziw_A 38 RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNN 115 (680)
T ss_dssp CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCSC
T ss_pred CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc--cChh
Confidence 3444556777777766543 266778888888877773 57778888888888887776 54 4
Q ss_pred cccCCCCCCEEecccCCCCCcc
Q psy8923 64 DLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 64 ~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
.+.++++|++|+|++|+++.++
T Consensus 116 ~~~~l~~L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNGLSSTK 137 (680)
T ss_dssp TTTTCTTCCEEECCSSCCSCCC
T ss_pred HccccCCCCEEECCCCcccccC
Confidence 5667778888888887777443
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.76 E-value=5.5e-09 Score=85.40 Aligned_cols=63 Identities=13% Similarity=0.367 Sum_probs=40.8
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCc-CccCCCCc-cccCCCCCCEEeccc-CCCCCccc
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNK-IKNSGIPV-DLFHLEDLTTLDLSH-NNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~-l~~~~ip~-~~~~l~~L~~L~Ls~-N~l~~ip~ 86 (273)
+|++|+|++|+|+++| ..|.++++|+.|++++|+ ++. +|. .+.++++|++|+|++ |+++.+|.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~--i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ--LESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE--ECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce--eCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 4566777777777665 356667777777777775 665 554 444666777777766 66666654
No 109
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.75 E-value=9e-09 Score=89.08 Aligned_cols=64 Identities=25% Similarity=0.281 Sum_probs=30.8
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
+|++|+|++|.|+.+| ..|.++++|+.|+|++|++++ ..|..+.++++|++|+|++|+++.+|.
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 3444555555555544 245555555555555555554 222334445555555555555554444
No 110
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.75 E-value=2.4e-08 Score=92.50 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=47.1
Q ss_pred CccEEEccCCCCCC--ch--hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchhhh
Q psy8923 22 LTEHLSIVNNNLEK--LF--GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALEN 90 (273)
Q Consensus 22 ~l~~L~l~~N~l~~--lp--~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~ 90 (273)
+|++|+|++|.+++ +| ..+..+++|+.|++++|++++ ..|..+.++++|+.|+|++|+++ ..|..+..
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-cChhhhccccCCCEEECCCCccCcCChhHhCc
Confidence 66778888887775 23 457777788888888887776 44566667778888888888777 34444443
No 111
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.74 E-value=1.5e-08 Score=92.67 Aligned_cols=59 Identities=29% Similarity=0.357 Sum_probs=28.4
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCC
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~ 80 (273)
+|++|+|++|.|+++| ..|+++++|++|+|++|.++.-.+|..+.++++|+.|++++|+
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 4455555555555543 2355555555555555555420123444455555555555554
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.74 E-value=2.6e-08 Score=84.03 Aligned_cols=61 Identities=33% Similarity=0.443 Sum_probs=46.2
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
++|++|+|++|.|+.+|. +..+++|++|+|++|+++. + +.+..+++|+.|+|++|+++.++
T Consensus 90 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~~ 150 (291)
T 1h6t_A 90 KNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDIT 150 (291)
T ss_dssp TTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCCG
T ss_pred CCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcch
Confidence 366778888888887665 7778888888888888876 5 35667788888888888877663
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.74 E-value=2.1e-08 Score=83.35 Aligned_cols=59 Identities=34% Similarity=0.538 Sum_probs=45.2
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
+|++|+|++|+|+++|.... ++|+.|+|++|+++. +| .+..+++|+.|+|++|+++.+|
T Consensus 86 ~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~Ls~N~i~~~~ 144 (263)
T 1xeu_A 86 KLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRD--TD-SLIHLKNLEILSIRNNKLKSIV 144 (263)
T ss_dssp SCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSB--SG-GGTTCTTCCEEECTTSCCCBCG
T ss_pred CCCEEECCCCccCCcCcccc--CcccEEEccCCccCC--Ch-hhcCcccccEEECCCCcCCCCh
Confidence 56778888888888775333 788888888888887 65 5777888888888888888775
No 114
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.72 E-value=1.9e-08 Score=86.22 Aligned_cols=67 Identities=31% Similarity=0.351 Sum_probs=43.7
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
+|++|+|++|.|+.++ ..|.++++|++|+|++|+++. ..|..+.++++|++|+|++|+++.+|..++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 122 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLVEIPPNLP 122 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGSTTCTTCCEEECCSSCCCSCCSSCC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc-cCHhHhhCcCCCCEEECCCCcCCccCcccc
Confidence 4566777777777664 466677777777777777765 335556666777777777777666665443
No 115
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.72 E-value=2e-08 Score=92.12 Aligned_cols=88 Identities=28% Similarity=0.364 Sum_probs=71.0
Q ss_pred CCCCccccCCCCCceecC----------------CCccEEEccCCCCCCchh-hhcCCccCCEeeccCCcCccCCCCccc
Q psy8923 3 GFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIPVDL 65 (273)
Q Consensus 3 g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp~-~~~~l~~L~~L~l~~N~l~~~~ip~~~ 65 (273)
+..|..|+.+++|+.+.+ ++|++|++++|.++.+|. .|+++++|++|++++|.++.-.+|..+
T Consensus 66 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~ 145 (570)
T 2z63_A 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh
Confidence 334666777777777643 378999999999999984 799999999999999999852368899
Q ss_pred cCCCCCCEEecccCCCCCccc-hhhh
Q psy8923 66 FHLEDLTTLDLSHNNIKQIPD-ALEN 90 (273)
Q Consensus 66 ~~l~~L~~L~Ls~N~l~~ip~-~l~~ 90 (273)
.++++|+.|++++|+++.++. .+..
T Consensus 146 ~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 146 SNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp GGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred cccCCCCEEeCcCCccceecHHHccc
Confidence 999999999999999996653 3443
No 116
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.72 E-value=3e-08 Score=84.35 Aligned_cols=62 Identities=27% Similarity=0.396 Sum_probs=48.2
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++|++|+|++|.|+.+| .+..+++|+.|+|++|+++. +|. +..+++|+.|+|++|+++.+|.
T Consensus 85 ~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~ 146 (308)
T 1h6u_A 85 TKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNISP 146 (308)
T ss_dssp CSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcCcc
Confidence 36777888888888875 57778888888888888887 664 6778888888888888887765
No 117
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.72 E-value=3e-08 Score=83.61 Aligned_cols=74 Identities=28% Similarity=0.320 Sum_probs=55.3
Q ss_pred ccCCCCCceecC--------------CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEE
Q psy8923 9 FCMASKSESVTI--------------GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL 74 (273)
Q Consensus 9 ~~~~~~l~~~~l--------------~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L 74 (273)
++.+++|+.+.+ ++|++|+|++|.|+.++ .+..+++|+.|++++|+++. + ..+..+++|+.|
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L 161 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTL 161 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEE
T ss_pred cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEE
Confidence 666666665533 37788888888888874 57778888888888888887 5 567778888888
Q ss_pred ecccCCCCCccc
Q psy8923 75 DLSHNNIKQIPD 86 (273)
Q Consensus 75 ~Ls~N~l~~ip~ 86 (273)
+|++|+++.++.
T Consensus 162 ~L~~N~l~~~~~ 173 (291)
T 1h6t_A 162 SLEDNQISDIVP 173 (291)
T ss_dssp ECCSSCCCCCGG
T ss_pred EccCCccccchh
Confidence 888888887665
No 118
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.70 E-value=1.9e-08 Score=85.23 Aligned_cols=70 Identities=26% Similarity=0.319 Sum_probs=56.4
Q ss_pred CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCc-cchhhh
Q psy8923 21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI-PDALEN 90 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~ 90 (273)
++|++|++++|.++++ |..|..+++|+.|++++|.+++..+|..+..+++|+.|+|++|+++.+ |..+..
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 197 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence 3678899999999875 577888999999999999987424788888999999999999999966 444443
No 119
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.70 E-value=6.6e-09 Score=91.11 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=61.6
Q ss_pred CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhhh
Q psy8923 21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENA 91 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~w 91 (273)
++|+.|+|++|.|+++ |..|..+++|+.|+|++|+++. +|..+..+++|+.|+|++|+++.+|..+..+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l 317 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 317 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHH
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcceecCcccccc
Confidence 4557899999999996 6889999999999999999998 8888889999999999999999999877654
No 120
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.69 E-value=6.6e-09 Score=96.35 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=60.8
Q ss_pred CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhhh
Q psy8923 21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENA 91 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~w 91 (273)
++|+.|+|++|.|+++ |..|+.+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++.+|..+..+
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l 323 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 323 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHH
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccC
Confidence 3457799999999996 6889999999999999999998 8888888999999999999999999877654
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.68 E-value=3.9e-08 Score=91.24 Aligned_cols=60 Identities=35% Similarity=0.425 Sum_probs=29.6
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
+|+.|+|++|.|+.+| .+..|++|+.|+|++|+|+. + ..+..|++|+.|+|++|+|+.++
T Consensus 110 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 110 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp TCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC--C-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC--c-hhhcccCCCCEEECcCCcCCCch
Confidence 3444555555555442 24445555555555555554 3 34445555555555555555443
No 122
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.68 E-value=2.5e-08 Score=86.23 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=37.6
Q ss_pred CccccCCCCCceecCCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCC
Q psy8923 6 PGTFCMASKSESVTIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQ 83 (273)
Q Consensus 6 p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ 83 (273)
+..|+.+++|+. |+|++|.|++++ ..|.++++|++|+|++|+++. +|.. +.++++|++|+|++|+++.
T Consensus 69 ~~~~~~l~~L~~--------L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~ 138 (353)
T 2z80_A 69 NSDLQRCVNLQA--------LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYKT 138 (353)
T ss_dssp TTTTTTCTTCCE--------EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCSS
T ss_pred HHHhccCCCCCE--------EECCCCccCccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCcc
Confidence 335666666644 555555555543 445555555555555555554 4443 3455555555555555555
Q ss_pred ccc
Q psy8923 84 IPD 86 (273)
Q Consensus 84 ip~ 86 (273)
+|.
T Consensus 139 l~~ 141 (353)
T 2z80_A 139 LGE 141 (353)
T ss_dssp SCS
T ss_pred cCc
Confidence 544
No 123
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.68 E-value=1.1e-08 Score=83.55 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=58.8
Q ss_pred CCccccCCCCCceecCCCccEEEccCCC-CCCch-hhhcCCccCCEeeccC-CcCccCCCCc-cccCCCCCCEEecccCC
Q psy8923 5 EPGTFCMASKSESVTIGLTEHLSIVNNN-LEKLF-GELTELQCLRTLNLRY-NKIKNSGIPV-DLFHLEDLTTLDLSHNN 80 (273)
Q Consensus 5 ~p~~~~~~~~l~~~~l~~l~~L~l~~N~-l~~lp-~~~~~l~~L~~L~l~~-N~l~~~~ip~-~~~~l~~L~~L~Ls~N~ 80 (273)
.|..|+.+++| ++|++++|. ++.+| ..|.++++|++|++++ |+++. +|. .+.++++|+.|++++|+
T Consensus 47 ~~~~~~~l~~L--------~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--i~~~~f~~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 47 PSHAFSNLPNI--------SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--IDPDALKELPLLKFLGIFNTG 116 (239)
T ss_dssp CTTTTTTCTTC--------CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--ECTTSEECCTTCCEEEEEEEC
T ss_pred CHHHccCCCCC--------cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--cCHHHhCCCCCCCEEeCCCCC
Confidence 34456666666 669999997 88887 5789999999999998 99998 765 55689999999999999
Q ss_pred CCCccc
Q psy8923 81 IKQIPD 86 (273)
Q Consensus 81 l~~ip~ 86 (273)
++.+|.
T Consensus 117 l~~lp~ 122 (239)
T 2xwt_C 117 LKMFPD 122 (239)
T ss_dssp CCSCCC
T ss_pred Cccccc
Confidence 998886
No 124
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.68 E-value=2e-08 Score=92.94 Aligned_cols=61 Identities=25% Similarity=0.267 Sum_probs=30.5
Q ss_pred CccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCC-CccccCCCCCCEEecccCCCCCc
Q psy8923 22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGI-PVDLFHLEDLTTLDLSHNNIKQI 84 (273)
Q Consensus 22 ~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~i-p~~~~~l~~L~~L~Ls~N~l~~i 84 (273)
+|++|+|++|.|+++ |..|+++++|++|++++|+++. + |..+.++++|++|+|++|+++.+
T Consensus 82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS--IDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC--GGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred ccCeeeCCCCcccccChhhhcccccccEeeccccCccc--CCcchhccCCcccEEECCCCccccc
Confidence 444455555555543 3445555555555555555554 3 33444555555555555555543
No 125
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.68 E-value=2.6e-08 Score=89.57 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=47.9
Q ss_pred CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923 21 GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
++|+.|+|++|.|+.++ ..|..+++|+.|+|++|+++. ..|..+.++++|+.|+|++|+|+.+|...+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE-ECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccce-ECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 35666777777777765 557777777777777777776 445566677777888888777777776543
No 126
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.67 E-value=5.2e-08 Score=82.80 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=59.2
Q ss_pred ccCCCCCceecC--------------CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEE
Q psy8923 9 FCMASKSESVTI--------------GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL 74 (273)
Q Consensus 9 ~~~~~~l~~~~l--------------~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L 74 (273)
++.+++|+.+.+ ++|++|+|++|.|+.+|+ +..+++|+.|++++|+++. +|. +..+++|+.|
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L 156 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYL 156 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEE
T ss_pred HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEE
Confidence 666666666543 378889999999988875 8888899999999998887 665 7788888889
Q ss_pred ecccCCCCCccc
Q psy8923 75 DLSHNNIKQIPD 86 (273)
Q Consensus 75 ~Ls~N~l~~ip~ 86 (273)
+|++|+++.++.
T Consensus 157 ~l~~n~l~~~~~ 168 (308)
T 1h6u_A 157 SIGNAQVSDLTP 168 (308)
T ss_dssp ECCSSCCCCCGG
T ss_pred EccCCcCCCChh
Confidence 998888887776
No 127
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.67 E-value=2.3e-08 Score=96.41 Aligned_cols=61 Identities=26% Similarity=0.306 Sum_probs=34.6
Q ss_pred CccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCcc--ccCCCCCCEEecccCCCCC
Q psy8923 22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVD--LFHLEDLTTLDLSHNNIKQ 83 (273)
Q Consensus 22 ~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~--~~~l~~L~~L~Ls~N~l~~ 83 (273)
+|++|+|++|.|+++ |..|+++++|++|+|++|.+++ .+|.. +.++++|++|+|++|+++.
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD-AVLKDGYFRNLKALTRLDLSKNQIRS 137 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS-CCSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc-ccccCccccccCCCCEEECCCCcccc
Confidence 455566666666654 4556666666666666666653 34433 4455566666666665553
No 128
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.66 E-value=5.7e-08 Score=88.77 Aligned_cols=77 Identities=27% Similarity=0.360 Sum_probs=43.8
Q ss_pred CCCccccCCCCCceecC-------------CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCC
Q psy8923 4 FEPGTFCMASKSESVTI-------------GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED 70 (273)
Q Consensus 4 ~~p~~~~~~~~l~~~~l-------------~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~ 70 (273)
.+|..++.+++|+.+.+ ++|++|+|++|+|++++ ..+++|+.|+|++|+|+. ||. ...+++
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~--ip~-~~~l~~ 474 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKT--LPD-ASLFPV 474 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSS--CCC-GGGCTT
T ss_pred cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc---ccCChhcEEECCCCccCc--CCC-cccCcc
Confidence 35555555555544322 24455555555555443 356666666666666665 665 345666
Q ss_pred CCEEecccCCCCCccc
Q psy8923 71 LTTLDLSHNNIKQIPD 86 (273)
Q Consensus 71 L~~L~Ls~N~l~~ip~ 86 (273)
|+.|+|++|+|+.+|.
T Consensus 475 L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 475 LLVMKISRNQLKSVPD 490 (549)
T ss_dssp CCEEECCSSCCCCCCT
T ss_pred CCEEecCCCccCCcCH
Confidence 6666666666665544
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=3e-08 Score=82.46 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=38.6
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++|++|++++|.|+.+| .+..+++|+.|+|++|+|++ +|. +.++++|+.|+|++|+++.+|.
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~l~~ 102 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKNLNG 102 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSCCTT
T ss_pred CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCCcCc
Confidence 34555666666666665 45666666666666666665 554 5566666666666666666554
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.65 E-value=4e-08 Score=90.44 Aligned_cols=58 Identities=33% Similarity=0.427 Sum_probs=47.9
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++|++|+|++|.|++||. .+++|+.|+|++|+|++ +|. +. ++|+.|+|++|+|+.+|.
T Consensus 140 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 140 ALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred ccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCCchhh
Confidence 467888888888888876 57888888888888887 887 54 888888888888888887
No 131
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.65 E-value=3e-08 Score=84.27 Aligned_cols=62 Identities=26% Similarity=0.406 Sum_probs=54.6
Q ss_pred CCccEEEccCCCCCCc-hhhhcCC---ccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 21 GLTEHLSIVNNNLEKL-FGELTEL---QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~l-p~~~~~l---~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++|++|+|++|+|+++ |+.++.+ ++|++|+|++|+|+. +|..+. ++|+.|+|++|+|+.+|.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhhc--CCCCEEECCCCcCCCCch
Confidence 4557799999999996 8777777 699999999999998 998875 899999999999998765
No 132
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.63 E-value=7.2e-08 Score=89.50 Aligned_cols=75 Identities=31% Similarity=0.356 Sum_probs=63.6
Q ss_pred cccCCCCCceecC--------------CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCE
Q psy8923 8 TFCMASKSESVTI--------------GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTT 73 (273)
Q Consensus 8 ~~~~~~~l~~~~l--------------~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~ 73 (273)
.++.+++|+.+.+ ++|+.|+|++|.|+.+ +.+..|++|+.|+|++|+|++ +++ +..|++|+.
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~ 179 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQN 179 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC--CGG-GTTCTTCCE
T ss_pred hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC--chh-hccCCCCCE
Confidence 5667777766643 4889999999999998 678899999999999999997 655 889999999
Q ss_pred EecccCCCCCccc
Q psy8923 74 LDLSHNNIKQIPD 86 (273)
Q Consensus 74 L~Ls~N~l~~ip~ 86 (273)
|+|++|+|+.+|.
T Consensus 180 L~Ls~N~i~~l~~ 192 (605)
T 1m9s_A 180 LYLSKNHISDLRA 192 (605)
T ss_dssp EECCSSCCCBCGG
T ss_pred EECcCCCCCCChH
Confidence 9999999998864
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.61 E-value=2.6e-08 Score=86.20 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=52.8
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccC-CcCccCCCCccc-cCCCCCCEEecccCCCCCccchhh
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRY-NKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPDALE 89 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~-N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~l~ 89 (273)
.++.|+|++|.|+.||+.....++|+.|++++ |.++. ||..+ .++++|+.||||+|+|+.+|...+
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~--i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCC--CCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred hhhhhccccccccCCChhhccccchhHHhhccCCcccC--CCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 46778889999988887666778888888874 67776 88754 588999999999999999987543
No 134
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.60 E-value=5.3e-08 Score=87.41 Aligned_cols=58 Identities=28% Similarity=0.254 Sum_probs=35.8
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
+|++|+|++|.|+++| ++.+++|++|++++|++++ +| +..+++|+.|++++|+++.+|
T Consensus 86 ~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~~l~ 143 (457)
T 3bz5_A 86 NLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLTEID 143 (457)
T ss_dssp TCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCSCCC
T ss_pred CCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCccceec
Confidence 5566666666666654 5566666666666666665 54 556666666666666666553
No 135
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.58 E-value=1.2e-07 Score=85.11 Aligned_cols=58 Identities=26% Similarity=0.291 Sum_probs=47.4
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
+|++|+|++|.|+++| ++.+++|++|++++|++++ +| +.++++|++|+|++|+++.+|
T Consensus 65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~l~ 122 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTKLD 122 (457)
T ss_dssp TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSCCC
T ss_pred CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCeec
Confidence 5677888888888886 7788888888888888887 65 778888888888888888775
No 136
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.58 E-value=9.7e-08 Score=92.04 Aligned_cols=85 Identities=21% Similarity=0.261 Sum_probs=69.3
Q ss_pred CccccCCCCCceecCC----------------CccEEEccCCCCCC-chhh--hcCCccCCEeeccCCcCccCCCC-ccc
Q psy8923 6 PGTFCMASKSESVTIG----------------LTEHLSIVNNNLEK-LFGE--LTELQCLRTLNLRYNKIKNSGIP-VDL 65 (273)
Q Consensus 6 p~~~~~~~~l~~~~l~----------------~l~~L~l~~N~l~~-lp~~--~~~l~~L~~L~l~~N~l~~~~ip-~~~ 65 (273)
|..|+++++|+.+.+. +|++|+|++|.+++ +|.. |++|++|++|+|++|.+++ ..| ..+
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~ 144 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-LYLHPSF 144 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC-CCCCGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc-cccchhH
Confidence 6678888888777543 78999999999998 5654 9999999999999999997 333 568
Q ss_pred cCCCCCCEEecccCCCC-Cccchhhhh
Q psy8923 66 FHLEDLTTLDLSHNNIK-QIPDALENA 91 (273)
Q Consensus 66 ~~l~~L~~L~Ls~N~l~-~ip~~l~~w 91 (273)
.++++|+.|+|++|+++ ..|..+...
T Consensus 145 ~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 145 GKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp GTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred hhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 89999999999999999 456666554
No 137
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.57 E-value=1e-07 Score=81.95 Aligned_cols=61 Identities=26% Similarity=0.349 Sum_probs=48.8
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
++|++|++++|.++.++ .+..+++|+.|++++|+++. +| .+..+++|+.|++++|+++.++
T Consensus 243 ~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~--~~-~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISD--IS-VLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp TTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCGGG
T ss_pred CCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCC--Ch-hhcCCCCCCEEECcCCcCCCcC
Confidence 36788888888888874 57788888888888888887 64 5678888888888888888444
No 138
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.56 E-value=4.4e-08 Score=90.19 Aligned_cols=62 Identities=27% Similarity=0.366 Sum_probs=28.1
Q ss_pred ccEEEccCCCCCCchhhhcCCccC-------CEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchhh
Q psy8923 23 TEHLSIVNNNLEKLFGELTELQCL-------RTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALE 89 (273)
Q Consensus 23 l~~L~l~~N~l~~lp~~~~~l~~L-------~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l~ 89 (273)
|++|+|++|.|+.||. |.. +| +.|+|++|+|+. ||..++.+++|+.|+|++|+|+ .+|..+.
T Consensus 182 L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 182 LEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred CCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 4444444444444444 332 33 445555555544 4544444555555555555554 4444433
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.54 E-value=1e-09 Score=87.24 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=54.5
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++|++|+|++|.|+.+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|++|+++.+|.
T Consensus 70 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~ 132 (198)
T 1ds9_A 70 ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGE 132 (198)
T ss_dssp TTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHH
T ss_pred CCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhH
Confidence 34577999999999999888888999999999999997 77 67788999999999999987765
No 140
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.52 E-value=6.5e-08 Score=83.69 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=53.5
Q ss_pred CCCceecC---CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCE-EecccCCCCCccc
Q psy8923 13 SKSESVTI---GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTT-LDLSHNNIKQIPD 86 (273)
Q Consensus 13 ~~l~~~~l---~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~-L~Ls~N~l~~ip~ 86 (273)
.+|..+|- .+++.|+|++|+|+.|| ..|.+|++|++|+|++|++.+ .+|... .++++|.. +.++.|+|+.+|.
T Consensus 19 ~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 19 SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccCCcccccCc
Confidence 34555542 47888999999999988 568899999999999998754 466544 36766553 5556677777665
Q ss_pred hhh
Q psy8923 87 ALE 89 (273)
Q Consensus 87 ~l~ 89 (273)
..+
T Consensus 98 ~~f 100 (350)
T 4ay9_X 98 EAF 100 (350)
T ss_dssp TSB
T ss_pred hhh
Confidence 433
No 141
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.51 E-value=2.4e-07 Score=83.06 Aligned_cols=52 Identities=27% Similarity=0.309 Sum_probs=32.4
Q ss_pred CCccccCCCCCceecCC------------CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCcc
Q psy8923 5 EPGTFCMASKSESVTIG------------LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN 58 (273)
Q Consensus 5 ~p~~~~~~~~l~~~~l~------------~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~ 58 (273)
+| .|+.+++|+.+.+. +|++|++++|.++++| .++++++|+.|++++|++++
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc
Confidence 56 47777777665432 5666777777766666 46666666666666666554
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=1.3e-07 Score=78.49 Aligned_cols=63 Identities=27% Similarity=0.264 Sum_probs=45.1
Q ss_pred CCCccEEEccCCCCCCch---hhhcCCccCCEeeccCCcCccCCCCccccCCC--CCCEEecccCCCC-Ccc
Q psy8923 20 IGLTEHLSIVNNNLEKLF---GELTELQCLRTLNLRYNKIKNSGIPVDLFHLE--DLTTLDLSHNNIK-QIP 85 (273)
Q Consensus 20 l~~l~~L~l~~N~l~~lp---~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~--~L~~L~Ls~N~l~-~ip 85 (273)
+++|+.|+|++|+|++|+ ..+..+++|+.|+|++|+|++ + ..+..+. +|+.|+|++|.++ .+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcceEEccCCcCccccC
Confidence 456777888888888754 556678888888888888886 4 3344444 7888888888877 455
No 143
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.45 E-value=4.1e-07 Score=81.52 Aligned_cols=76 Identities=25% Similarity=0.269 Sum_probs=48.7
Q ss_pred CCccccCCCCCceecC------------CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCC
Q psy8923 5 EPGTFCMASKSESVTI------------GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLT 72 (273)
Q Consensus 5 ~p~~~~~~~~l~~~~l------------~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~ 72 (273)
+| .++.+++|+.+.+ ++|++|++++|.++.+| .++.+++|+.|++++|++++ +|.. +++|+
T Consensus 188 l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l~~~---~~~L~ 260 (454)
T 1jl5_A 188 LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--LPDL---PPSLE 260 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--CCSC---CTTCC
T ss_pred Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--cccc---ccccC
Confidence 45 4666666665433 25677777777777666 36677777777777777776 6643 35666
Q ss_pred EEecccCCCCCccch
Q psy8923 73 TLDLSHNNIKQIPDA 87 (273)
Q Consensus 73 ~L~Ls~N~l~~ip~~ 87 (273)
.|++++|+++.+|..
T Consensus 261 ~L~l~~N~l~~l~~~ 275 (454)
T 1jl5_A 261 ALNVRDNYLTDLPEL 275 (454)
T ss_dssp EEECCSSCCSCCCCC
T ss_pred EEECCCCcccccCcc
Confidence 666666666666553
No 144
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.44 E-value=4.4e-07 Score=77.96 Aligned_cols=62 Identities=31% Similarity=0.388 Sum_probs=50.0
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++|++|++++|.|+.+|+ +..+++|++|++++|.++. +| .+.++++|++|++++|+++.+|.
T Consensus 66 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~ 127 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDISP 127 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCCGG
T ss_pred CCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCchh
Confidence 466778888888888877 8888888888888888887 65 57788888888888888887765
No 145
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.42 E-value=4.9e-07 Score=81.14 Aligned_cols=60 Identities=30% Similarity=0.384 Sum_probs=32.4
Q ss_pred CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip 85 (273)
+|++|+|++|.|+.+|+ +.++++|++|++++|.++. +|. +.++++|++|+|++|+++.+|
T Consensus 69 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCEEECCCCccCCchh-hhccccCCEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCCCh
Confidence 44555555555555554 5555555555555555554 443 445555555555555555444
No 146
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.41 E-value=4.2e-07 Score=84.56 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=20.2
Q ss_pred ccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 44 QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 44 ~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++|+.|+|++|+|++ +| ..+++|+.|+|++|+|+.+|.
T Consensus 221 ~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~~lp~ 258 (622)
T 3g06_A 221 SGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRLTSLPM 258 (622)
T ss_dssp TTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCC
T ss_pred CCCCEEEccCCccCc--CC---CCCCcCcEEECCCCCCCcCCc
Confidence 445555555555554 55 233555555555555555554
No 147
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.39 E-value=2.6e-07 Score=85.94 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=49.5
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
++|+.|+|++|.|+++| ..+++|+.|+|++|+|+. +|. .+++|+.|+|++|+|+.||..+..
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~l~~ 282 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPESLIH 282 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGGGGG
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHHHhh
Confidence 56788888888888887 456788888888888887 886 567888888888888888876654
No 148
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.37 E-value=4.5e-07 Score=81.41 Aligned_cols=62 Identities=31% Similarity=0.385 Sum_probs=55.4
Q ss_pred CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++|++|++++|.++++++ ++++++|++|++++|.++. +|. +.++++|++|++++|+++.+|.
T Consensus 90 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~ 151 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD--IDP-LKNLTNLNRLELSSNTISDISA 151 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEEEEEEEEECCCGG
T ss_pred ccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCC--ChH-HcCCCCCCEEECCCCccCCChh
Confidence 477889999999999887 9999999999999999998 765 8899999999999999988764
No 149
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.18 E-value=3.5e-07 Score=78.19 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=42.1
Q ss_pred CccEEEccCC-CCCC--chhhhcCCccCCEeeccCC-cCccCCCCccccCCC-CCCEEecccCC
Q psy8923 22 LTEHLSIVNN-NLEK--LFGELTELQCLRTLNLRYN-KIKNSGIPVDLFHLE-DLTTLDLSHNN 80 (273)
Q Consensus 22 ~l~~L~l~~N-~l~~--lp~~~~~l~~L~~L~l~~N-~l~~~~ip~~~~~l~-~L~~L~Ls~N~ 80 (273)
+|++|+|++| .++. +|..+..+++|+.|++++| .++...+|..+..++ +|+.|+|++|+
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 6677888887 6774 6666777788888888888 777412455566777 78888887773
No 150
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.15 E-value=3.9e-07 Score=79.09 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=33.7
Q ss_pred CCCCCccccCCCCCceecCCCccEEEccCCCCCCch-----hhhcCCc-cCCEeeccCCcCccCCCCccccCC-----CC
Q psy8923 2 VGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLF-----GELTELQ-CLRTLNLRYNKIKNSGIPVDLFHL-----ED 70 (273)
Q Consensus 2 ~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-----~~~~~l~-~L~~L~l~~N~l~~~~ip~~~~~l-----~~ 70 (273)
+|.+|..+...++| ++|+|++|.|+.++ ..|..++ +|+.|+|++|+++. ..+..+..+ ++
T Consensus 11 ~~~~~~~~~~~~~L--------~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 11 SNPVEEFTSIPHGV--------TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPAN 81 (362)
T ss_dssp CCHHHHHHTSCTTC--------CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTT
T ss_pred hHHHHHHHhCCCCc--------eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCCC
Confidence 44555555555555 33555555555432 3344444 45555555555543 222233322 44
Q ss_pred CCEEecccCCCC
Q psy8923 71 LTTLDLSHNNIK 82 (273)
Q Consensus 71 L~~L~Ls~N~l~ 82 (273)
|+.|+|++|+++
T Consensus 82 L~~L~Ls~n~l~ 93 (362)
T 3goz_A 82 VTSLNLSGNFLS 93 (362)
T ss_dssp CCEEECCSSCGG
T ss_pred ccEEECcCCcCC
Confidence 555555555544
No 151
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.09 E-value=8.8e-07 Score=77.40 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=36.0
Q ss_pred cEEEccCCCCC--C---c-hhhhcCCccCCEeeccCCcCc----cCCCCccccCCCCCCEEecccCCCC
Q psy8923 24 EHLSIVNNNLE--K---L-FGELTELQCLRTLNLRYNKIK----NSGIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 24 ~~L~l~~N~l~--~---l-p~~~~~l~~L~~L~l~~N~l~----~~~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
++|+|++|.|+ + + |..+..+++|+.|+|++|.++ . .+|..+..+++|+.|+|++|+++
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEEECTTCCCC
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH-HHHHHHccCCCcCEEECCCCCCc
Confidence 55666666666 2 2 235666666677777766663 2 25666666666666666666666
No 152
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.06 E-value=1.3e-06 Score=74.51 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=51.9
Q ss_pred CCccEEEccCCCCCC--chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccC-CCC--Cccchhh
Q psy8923 21 GLTEHLSIVNNNLEK--LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN-NIK--QIPDALE 89 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~--lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N-~l~--~ip~~l~ 89 (273)
++|++|+|++|.++. +|..+..+++|+.|+|++|.++. .+|..+..+++|+.|+|++| .++ .+|..+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 456778888888875 67778888888888888888875 57777778888888888888 676 2555443
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.96 E-value=8.2e-06 Score=69.69 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=56.1
Q ss_pred CCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCC-EEecccCCCCCccchhhh
Q psy8923 20 IGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLT-TLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 20 l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~-~L~Ls~N~l~~ip~~l~~ 90 (273)
.++|+.|+|++|+++.|| ..|.++++|+.|+|++| ++. |++..+ +|++|+ .++++. +++.|+...+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~--I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT--IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM 294 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE--ECTTTTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce--ehHHHhhCChhccEEEEEcc-cceEEchhhhh
Confidence 467888999999999998 77999999999999988 877 777655 889999 999988 78888876654
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.95 E-value=1.1e-05 Score=59.46 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=47.8
Q ss_pred cEEEccCCCCC--CchhhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCC
Q psy8923 24 EHLSIVNNNLE--KLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK 82 (273)
Q Consensus 24 ~~L~l~~N~l~--~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~ 82 (273)
..++-+++.++ .+|..+. ++|+.|+|++|+|+. ||..++ .+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTA--LPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSS--CCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCc--cChhhhhhccccCEEEecCCCee
Confidence 46899999999 8996432 579999999999998 988766 8999999999999987
No 155
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.89 E-value=5.5e-06 Score=72.29 Aligned_cols=70 Identities=21% Similarity=0.225 Sum_probs=55.9
Q ss_pred CCccEEEccCCCCC--Cch---hhhcCCccCCEeeccCCcCccC----CCCccccCCCCCCEEecccCCCC-----Cccc
Q psy8923 21 GLTEHLSIVNNNLE--KLF---GELTELQCLRTLNLRYNKIKNS----GIPVDLFHLEDLTTLDLSHNNIK-----QIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~--~lp---~~~~~l~~L~~L~l~~N~l~~~----~ip~~~~~l~~L~~L~Ls~N~l~-----~ip~ 86 (273)
++|++|+|++|.|+ ++| ..+..+++|+.|+|++|+++.. .+|..+..+++|+.|+|++|+++ .+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 67899999999998 356 5788999999999999999831 14447789999999999999994 4555
Q ss_pred hhhh
Q psy8923 87 ALEN 90 (273)
Q Consensus 87 ~l~~ 90 (273)
.+..
T Consensus 239 ~l~~ 242 (386)
T 2ca6_A 239 ALKS 242 (386)
T ss_dssp HGGG
T ss_pred HHcc
Confidence 4443
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=1.4e-05 Score=68.18 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=56.6
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCC-EeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccchhhh
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLR-TLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~-~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
+|+.|+|++| ++.|+ ..|.++++|+ .+++++ +++. |++. |.+|++|+.|+++.|+++.|+...+.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~--I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA--IEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE--ECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE--EchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 4577999998 99997 8899999999 999998 8887 7754 55999999999999999999986664
No 157
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.72 E-value=1.1e-05 Score=69.89 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=36.0
Q ss_pred CccEEEccCCCCCCc-hhhhcCC-----ccCCEeeccCCcCccCCCCcc----ccCC-CCCCEEecccCCCCCcc
Q psy8923 22 LTEHLSIVNNNLEKL-FGELTEL-----QCLRTLNLRYNKIKNSGIPVD----LFHL-EDLTTLDLSHNNIKQIP 85 (273)
Q Consensus 22 ~l~~L~l~~N~l~~l-p~~~~~l-----~~L~~L~l~~N~l~~~~ip~~----~~~l-~~L~~L~Ls~N~l~~ip 85 (273)
+|++|+|++|.|+.. +..+..+ ++|+.|+|++|.++. ..+.. +..+ ++|+.|+|++|+++..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 345566777666664 3445543 666666666666665 22222 2233 56666666666666443
No 158
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.56 E-value=3e-05 Score=68.94 Aligned_cols=61 Identities=25% Similarity=0.236 Sum_probs=40.1
Q ss_pred CccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccCC----CCcccc-CCCCCCEEecccCCCCC
Q psy8923 22 LTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNSG----IPVDLF-HLEDLTTLDLSHNNIKQ 83 (273)
Q Consensus 22 ~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~~----ip~~~~-~l~~L~~L~Ls~N~l~~ 83 (273)
+|++|+|++|.++. ++..+..+++|+.|++++|.++. . +++.+. .+++|+.|+|++|+++.
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD-VGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh-HHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 66777777777776 45666677777777777777764 1 112222 46777777777777774
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.55 E-value=2.6e-05 Score=67.94 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=36.7
Q ss_pred CCccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCC
Q psy8923 21 GLTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
..|+.|+|++|.|+. ++..+..+++|++|+|++|.|+.. .++..+..+++|+.|+|++|+|+
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 345667777776664 334455666677777777766530 12334445566666666666666
No 160
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.52 E-value=2.2e-05 Score=69.80 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=51.4
Q ss_pred CCccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccCCCCcccc-----CCCCCCEEecccCCCC-----Ccc
Q psy8923 21 GLTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNSGIPVDLF-----HLEDLTTLDLSHNNIK-----QIP 85 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-----~l~~L~~L~Ls~N~l~-----~ip 85 (273)
++|++|+|++|.|+. +|..+..+++|+.|+|++|.++. ..+..+. ..++|+.|+|++|+++ .+|
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 478889999999885 46677788999999999998886 3233333 2678999999999888 455
Q ss_pred chhhh
Q psy8923 86 DALEN 90 (273)
Q Consensus 86 ~~l~~ 90 (273)
..+..
T Consensus 392 ~~l~~ 396 (461)
T 1z7x_W 392 ATLLA 396 (461)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 54443
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.51 E-value=3.8e-05 Score=66.91 Aligned_cols=63 Identities=21% Similarity=0.177 Sum_probs=42.1
Q ss_pred CCccEEEccCCCCCCch-hhh-----cCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCCC
Q psy8923 21 GLTEHLSIVNNNLEKLF-GEL-----TELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIKQ 83 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp-~~~-----~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~~ 83 (273)
.+|+.|+|++|.|+... ..+ ...++|+.|+|++|.|+.. .++..+..+++|++|+|++|+|+.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~ 197 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence 35677888888887532 222 2457788888888887640 133344567788888888888763
No 162
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.48 E-value=2.8e-05 Score=71.43 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=29.2
Q ss_pred CCccEEEccCC--CCCC-chhhh-cCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923 21 GLTEHLSIVNN--NLEK-LFGEL-TELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 21 ~~l~~L~l~~N--~l~~-lp~~~-~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
++|++|+|+.+ .++. .+..+ ..+++|++|++++|.++...++..+.++++|+.|+|++|+++
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 34455555432 2443 22222 235555555555555543123333345555555555555554
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.37 E-value=9.7e-05 Score=61.20 Aligned_cols=54 Identities=20% Similarity=0.116 Sum_probs=42.9
Q ss_pred CCCccEEEccCCCCCCch--hhhcCCccCCEeeccCCcCccCCCCc-------cccCCCCCCEEe
Q psy8923 20 IGLTEHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPV-------DLFHLEDLTTLD 75 (273)
Q Consensus 20 l~~l~~L~l~~N~l~~lp--~~~~~l~~L~~L~l~~N~l~~~~ip~-------~~~~l~~L~~L~ 75 (273)
+++|+.|+|++|+|+++. ..+..+ +|+.|+|++|.+++ .+|. .+..+++|+.||
T Consensus 195 l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~-~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 195 APNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD-TFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp STTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG-GCSSHHHHHHHHHHHCTTCCEES
T ss_pred CCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc-ccCcchhHHHHHHHHCcccCeEC
Confidence 456788999999999983 344444 99999999999985 6763 245789999887
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.29 E-value=0.00011 Score=57.25 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=45.0
Q ss_pred CCccEEEccCC-CCCC-----chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCCC
Q psy8923 21 GLTEHLSIVNN-NLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIKQ 83 (273)
Q Consensus 21 ~~l~~L~l~~N-~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~~ 83 (273)
+.|+.|+|++| .|+. +...+...++|+.|+|++|.|... .+...+...++|+.|+|++|+|+.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 45677888888 8874 346677778888888888888640 123334455788888888888873
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.27 E-value=0.00031 Score=51.56 Aligned_cols=37 Identities=38% Similarity=0.372 Sum_probs=33.9
Q ss_pred CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCc
Q psy8923 21 GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIK 57 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~ 57 (273)
.+|+.|+|++|+|+.|| ..|..+++|+.|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 37899999999999998 77899999999999999885
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.22 E-value=0.0005 Score=60.41 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=27.9
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCC
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK 82 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~ 82 (273)
+|+.+++.+| ++.|+ ..|.+ .+|+.+.+ .|+++. |+...+ +|++|+.++++.|.++
T Consensus 227 ~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~--I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 227 QLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTN--IASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp TCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCE--ECTTTTTTCTTCCEEEEESSCCC
T ss_pred CCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccE--EChhHhhCCCCCCEEEeCCcccc
Confidence 3444555543 45554 44444 55555555 334444 443333 5555666655555443
No 167
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.14 E-value=0.00021 Score=55.78 Aligned_cols=61 Identities=23% Similarity=0.247 Sum_probs=48.3
Q ss_pred CccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEec--ccCCCC
Q psy8923 22 LTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDL--SHNNIK 82 (273)
Q Consensus 22 ~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~L--s~N~l~ 82 (273)
.|++|+|++|.|+. |...+...++|++|+|++|.|... .+...+...++|+.|+| ++|.++
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 57889999999984 446677778999999999999751 13455667788999999 889987
No 168
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.91 E-value=0.00015 Score=62.79 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=41.6
Q ss_pred cCCCccEEEccC--CC------CCCchhhh--cCCccCCEeeccCCcCccCCCCcccc---CCCCCCEEecccCCCCC
Q psy8923 19 TIGLTEHLSIVN--NN------LEKLFGEL--TELQCLRTLNLRYNKIKNSGIPVDLF---HLEDLTTLDLSHNNIKQ 83 (273)
Q Consensus 19 ~l~~l~~L~l~~--N~------l~~lp~~~--~~l~~L~~L~l~~N~l~~~~ip~~~~---~l~~L~~L~Ls~N~l~~ 83 (273)
.+++|+.|+|+. |. +..|.+.+ ..+++|+.|+|++|.+.. ..+..+. .+++|+.|+||.|+|+.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 467888888853 22 22222233 247889999998888874 3333333 46788999998888874
No 169
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.85 E-value=0.00026 Score=65.01 Aligned_cols=66 Identities=11% Similarity=0.131 Sum_probs=35.7
Q ss_pred CCccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCcc---CCCCccccCCCCCCEEecccCCCCCccc
Q psy8923 21 GLTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKN---SGIPVDLFHLEDLTTLDLSHNNIKQIPD 86 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~---~~ip~~~~~l~~L~~L~Ls~N~l~~ip~ 86 (273)
++|++|+|++|.++. ++..+..+++|+.|++++|.++. +.++..+.++++|+.|+|++|.++.+|.
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~ 237 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG 237 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH
Confidence 355666666665543 22344455666666666666652 0123333456666666666666655554
No 170
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.77 E-value=0.0016 Score=57.13 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=44.8
Q ss_pred CccEEEccCCCCC-----Cch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhh
Q psy8923 22 LTEHLSIVNNNLE-----KLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 22 ~l~~L~l~~N~l~-----~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
+|+.+.+.+|.+. .|+ ..|.++++|+.+.|. |+++. |+...+ +|++|+.++|..| ++.|+...+.
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~--I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI--LGQGLLGGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE--ECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE--EhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence 4466777777665 465 678888888888887 45776 666544 7788888888543 6777665554
No 171
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.62 E-value=0.00046 Score=63.24 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=41.9
Q ss_pred CCccEEEccCCCCCCc-hhhhcC-CccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCC
Q psy8923 21 GLTEHLSIVNNNLEKL-FGELTE-LQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 21 ~~l~~L~l~~N~l~~l-p~~~~~-l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~ 82 (273)
++|+.|+|++ .++.. +..++. +++|+.|+|++|.++. ..+..+ .++++|+.|+|++|+++
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD-LGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH-HHHHHHHHHCTTCCEEEEESCSCC
T ss_pred CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH-HHHHHHHhcCCCcCEEECcCCCCc
Confidence 4677788876 66653 345554 7888888888888865 333333 46788888888888875
No 172
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.04 E-value=0.003 Score=48.74 Aligned_cols=60 Identities=12% Similarity=0.219 Sum_probs=45.1
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCc-CccCCCCccccCC----CCCCEEecccCC-CC
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNK-IKNSGIPVDLFHL----EDLTTLDLSHNN-IK 82 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~-l~~~~ip~~~~~l----~~L~~L~Ls~N~-l~ 82 (273)
.|+.|||+++.|+..- ..+..+++|+.|+|+++. ++. .--..+..+ ++|++|+|+++. +|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 6899999999998643 567899999999999985 765 111223343 479999999864 66
No 173
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.83 E-value=0.0084 Score=51.75 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=50.8
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhh
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
.|+.+.+.. .++.|+ ..|.++++|+.+.+.++.++. |++..+ +|++|+.+.|..+ ++.|+...+.
T Consensus 264 ~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 330 (379)
T 4h09_A 264 ALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK 330 (379)
T ss_dssp TCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred hhccccccc-cceeccccccccccccccccccccccce--ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh
Confidence 566677754 477777 778999999999999999987 876555 8899999999754 7888776554
No 174
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.78 E-value=0.0029 Score=57.91 Aligned_cols=61 Identities=10% Similarity=0.026 Sum_probs=46.4
Q ss_pred CCCccEEEcc--C----CCCCCch------hhhcCCccCCEeeccCCcCccCCCCccccC-CCCCCEEecccCCCC
Q psy8923 20 IGLTEHLSIV--N----NNLEKLF------GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIK 82 (273)
Q Consensus 20 l~~l~~L~l~--~----N~l~~lp------~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~-l~~L~~L~Ls~N~l~ 82 (273)
+++|+.|+|+ + |.++..| ..+..+++|+.|+|++ .++. ..+..+.. +++|+.|+|++|.++
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~-~~~~~l~~~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD-KVFEYIGTYAKKMEMLSVAFAGDS 469 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH-HHHHHHHHHCTTCCEEEEESCCSS
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH-HHHHHHHHhchhccEeeccCCCCc
Confidence 6788889998 4 7788543 3467789999999987 6664 34445554 889999999999987
No 175
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.64 E-value=0.028 Score=48.78 Aligned_cols=64 Identities=16% Similarity=0.311 Sum_probs=38.2
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhh
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
.|+.+.+. +.++.|+ ..|.++++|+.+.|..+ ++. |.+..+ +|++|+.+.+.. .++.|+...+.
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~--I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~ 354 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQ--ILDDAFAGCEQLERIAIPS-SVTKIPESAFS 354 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCE--ECTTTTTTCTTCCEEEECT-TCCBCCGGGGT
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccE--ehHhHhhCCCCCCEEEECc-ccCEEhHhHhh
Confidence 45556654 4566665 56777777777777643 555 554433 667777777753 36666654443
No 176
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.55 E-value=0.019 Score=49.42 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=52.6
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhhh
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALENA 91 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~w 91 (273)
.|+.+.+..+ ++.|+ ..|.++.+|+.+.+..+ ++. ++...+ +|++|+.+.+..|.++.|+...+.-
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~--i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT--VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE--ECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-cee--ccccccccccccccccccccccceehhhhhcC
Confidence 5667777665 77786 78899999999999754 666 776555 8999999999999999998876653
No 177
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=95.29 E-value=0.033 Score=46.49 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=38.6
Q ss_pred eEEEEecCcccCCCCceEEEEecC-CCCCCCCCCEEEEE------CCC---eEEEEeCCCCCHHHHHHhhh
Q psy8923 164 RLYRVHAPLHQAQASSIHLEPVPV-LSESLDPRFVFLLD------AGL---KLFIWNGPKAKNTFVFLLDA 224 (273)
Q Consensus 164 ~L~~v~g~~~~~~~~~~~~~ev~~-~~ssL~s~dvfild------~~~---~~~vW~G~~s~~~e~~~~~~ 224 (273)
.+.||.+- ...+||. ....+.++||||+- .+. .+|.|.|+.|+.+|+..|..
T Consensus 36 ~iWrIe~~---------~~~~v~~~~~G~Fy~gd~Yivl~t~~~~~g~~~~~i~~W~G~~ss~de~g~aa~ 97 (297)
T 3tu5_B 36 QIWRVEKF---------DLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAI 97 (297)
T ss_dssp EEEEEETT---------EEEECCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEEcCC---------EEEECCHHHcCeecCCCeEEEeEeEECCCCceeEEEEEEeCCCCChhHHHHHHH
Confidence 56676543 5667764 45788999999984 222 48999999999999887653
No 178
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.27 E-value=0.035 Score=48.18 Aligned_cols=55 Identities=13% Similarity=0.320 Sum_probs=45.7
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCC
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~ 80 (273)
+|+.+.|.+| ++.|. ..|.++++|+.+.+..+ ++. |+...+ +|++|+.++++.|.
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~--I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK--IPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB--CCGGGGTTCTTCCEEEESSCH
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE--EhHhHhhCCCCCCEEEECCce
Confidence 6788888764 88886 88999999999999754 777 876555 99999999998765
No 179
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.17 E-value=0.011 Score=46.30 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=44.3
Q ss_pred CccEEEccCC-CCCC-----chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCC
Q psy8923 22 LTEHLSIVNN-NLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIK 82 (273)
Q Consensus 22 ~l~~L~l~~N-~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~ 82 (273)
.|+.|+|++| .|.. |-..+..=+.|+.|+|++|+|... .|-+.+..-+.|+.|+|+.|+|+
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 6788999985 8873 346677778899999999998750 12223334478999999999987
No 180
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.16 E-value=0.031 Score=48.52 Aligned_cols=64 Identities=11% Similarity=0.240 Sum_probs=40.8
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhh
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALEN 90 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~ 90 (273)
+|+.+.+.++ ++.|+ ..|.++++|+.++|.. .++. |+...+ +|++|+.+++..| ++.|+...+.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~--I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEE--IGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCE--ECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCC-cccE--EhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 4555666543 66665 6677777777777764 3665 655443 7777777777655 6666654443
No 181
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.11 E-value=0.0067 Score=52.43 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=43.5
Q ss_pred CCCccEEEccCCCCCCch-hhhc--CCccCCEeeccC--CcCccC----CCCcccc--CCCCCCEEecccCCCC
Q psy8923 20 IGLTEHLSIVNNNLEKLF-GELT--ELQCLRTLNLRY--NKIKNS----GIPVDLF--HLEDLTTLDLSHNNIK 82 (273)
Q Consensus 20 l~~l~~L~l~~N~l~~lp-~~~~--~l~~L~~L~l~~--N~l~~~----~ip~~~~--~l~~L~~L~Ls~N~l~ 82 (273)
+++|+.|+|..+.++.-. ..+. .+++|+.|+|+. |...+. .+...+. .+++|+.|+|++|.++
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence 468999999999887522 4444 789999999864 222110 0222232 5799999999999987
No 182
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.55 E-value=0.032 Score=48.47 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=44.1
Q ss_pred CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccC
Q psy8923 22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79 (273)
Q Consensus 22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N 79 (273)
+|+.++|.+ .++.|+ .+|.++++|+.+.+..| ++. |+...+ +|++|+.++++.|
T Consensus 321 ~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~--I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 321 SLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRK--IGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCE--ECTTTBTTCTTCCEEEEEGG
T ss_pred CCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccE--ehHHHhhCCCCCCEEEECCC
Confidence 567788864 488896 88999999999999877 877 776555 9999999998653
No 183
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.24 E-value=0.02 Score=43.99 Aligned_cols=60 Identities=20% Similarity=0.339 Sum_probs=44.2
Q ss_pred CCCccEEEccCC-CCCCch-hhhcCC----ccCCEeeccCCc-CccCCCCccccCCCCCCEEecccCC
Q psy8923 20 IGLTEHLSIVNN-NLEKLF-GELTEL----QCLRTLNLRYNK-IKNSGIPVDLFHLEDLTTLDLSHNN 80 (273)
Q Consensus 20 l~~l~~L~l~~N-~l~~lp-~~~~~l----~~L~~L~l~~N~-l~~~~ip~~~~~l~~L~~L~Ls~N~ 80 (273)
+++|+.|+|+++ .|+.-- ..+..+ ++|+.|+|+++. ++...+ ..+..+++|+.|+|++..
T Consensus 84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCT
T ss_pred CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCC
Confidence 457899999998 488532 455554 489999999975 776222 345688999999999853
No 184
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=93.50 E-value=0.091 Score=37.93 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=38.0
Q ss_pred eEEEEecCcccCCCCceEEEEecC-CCCCCCCCCEEEEEC-----C---CeEEEEeCCCCCHHHHHHhhh
Q psy8923 164 RLYRVHAPLHQAQASSIHLEPVPV-LSESLDPRFVFLLDA-----G---LKLFIWNGPKAKNTFVFLLDA 224 (273)
Q Consensus 164 ~L~~v~g~~~~~~~~~~~~~ev~~-~~ssL~s~dvfild~-----~---~~~~vW~G~~s~~~e~~~~~~ 224 (273)
.+.|+.+. ...+||. ....+.++||||+-- + -.+|.|.|+.|+.+|+..|..
T Consensus 19 ~vWrIe~~---------~~~~vp~~~~G~Fy~gd~YIvl~t~~~~g~~~~~i~~W~G~~ss~de~g~Aa~ 79 (126)
T 2vik_A 19 QIWRIENM---------EMVPVPTKSYGNFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAI 79 (126)
T ss_dssp EEEECGGG---------SCCEECTTTTTCCCSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCC---------EEEECChhhcCeeCCCCeEEEEEeccCCCceeEEEEEEeCCCCCchhHHHHHH
Confidence 46666543 3456654 467899999999842 2 248999999999999988754
No 185
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.72 E-value=0.049 Score=42.65 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=45.2
Q ss_pred CccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCC
Q psy8923 22 LTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNI 81 (273)
Q Consensus 22 ~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l 81 (273)
.|+.|+|++|.|.. |-..+..=+.|+.|+|+.|+|... .|-+++..-+.|+.|+|++|..
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ 138 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcC
Confidence 67999999999993 456676778999999999999851 1222344446799999987643
No 186
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=92.01 E-value=0.09 Score=38.07 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=44.1
Q ss_pred eeEEEEecCcccCCCCceEEEEecC-CCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceE
Q psy8923 163 TRLYRVHAPLHQAQASSIHLEPVPV-LSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFV 241 (273)
Q Consensus 163 ~~L~~v~g~~~~~~~~~~~~~ev~~-~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v 241 (273)
..+.|+.+. ...+||. ....+.++||||+- |...... |.
T Consensus 20 l~vWrIe~~---------~~~~vp~~~~G~Fy~gd~YIvl-----~ty~~~~-------------------g~------- 59 (128)
T 3cip_G 20 LQIWRVEKF---------DLVPVPTNLYGDFFTGDAYVIL-----KTVQLRN-------------------GN------- 59 (128)
T ss_dssp EEEEEEETT---------EEEECCGGGTTEEETTCEEEEE-----EEEECTT-------------------SC-------
T ss_pred eEEEEEeCC---------EEEECChHHcCeecCCCeEEEE-----EEEecCC-------------------Cc-------
Confidence 356777744 5666764 45788999999985 2221100 00
Q ss_pred EEEeCCceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923 242 FLLDAGLKLFIWNGPKAKNTFKSKTRLLAEK 272 (273)
Q Consensus 242 ~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~ 272 (273)
....||.|+|++|+..|+..|...|.+
T Consensus 60 ----~~~~i~~W~G~~ss~de~g~Aa~~ave 86 (128)
T 3cip_G 60 ----LQYDLHYWLGNECSQDESGAAAIFTVQ 86 (128)
T ss_dssp ----EEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ----eEEEEEEEcCCCCCcchHHHHHHHHHH
Confidence 134799999999999999988665543
No 187
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=91.64 E-value=0.1 Score=38.76 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=44.1
Q ss_pred eeEEEEecCcccCCCCceEEEEecC-CCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceE
Q psy8923 163 TRLYRVHAPLHQAQASSIHLEPVPV-LSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFV 241 (273)
Q Consensus 163 ~~L~~v~g~~~~~~~~~~~~~ev~~-~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v 241 (273)
..+.++.+. ...+||. ....+.++||||+- |..... .+.
T Consensus 39 l~VWrIe~~---------~~v~vp~~~~G~FysgD~YIVl-----~ty~~~-------------------~g~------- 78 (150)
T 2ff3_A 39 LQIWRVEKF---------DLVPVPTNLYGDFFTGDAYVIL-----KTVQLR-------------------NGN------- 78 (150)
T ss_dssp EEEEEEETT---------EEEECCGGGTTEEETTSEEEEE-----EEEECT-------------------TSS-------
T ss_pred eEEEEEeCC---------EEEECChHHcCeecCCCeEEEE-----EEEecC-------------------CCc-------
Confidence 356777644 5666764 45788999999985 322110 000
Q ss_pred EEEeCCceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923 242 FLLDAGLKLFIWNGPKAKNTFKSKTRLLAEK 272 (273)
Q Consensus 242 ~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~ 272 (273)
....||.|+|++|+..|+..|...|.+
T Consensus 79 ----~~~~IyfW~G~~ss~de~gaAA~~ave 105 (150)
T 2ff3_A 79 ----LQYDLHYWLGNECSQDESGAAAIFTVQ 105 (150)
T ss_dssp ----EEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ----eEEEEEEEeCCCCCchhHHHHHHHHHH
Confidence 134799999999999999988665544
No 188
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=90.58 E-value=0.15 Score=37.85 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=44.1
Q ss_pred eeEEEEecCcccCCCCceEEEEecC-CCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceE
Q psy8923 163 TRLYRVHAPLHQAQASSIHLEPVPV-LSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFV 241 (273)
Q Consensus 163 ~~L~~v~g~~~~~~~~~~~~~ev~~-~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v 241 (273)
..+.||.+. ...+||. ....+.++||||+- |..... .|.
T Consensus 17 l~VWrIe~~---------~~~~vp~~~~G~Fy~gd~YIvl-----~ty~~~-------------------~g~------- 56 (147)
T 1t44_G 17 LQIWRVEKF---------DLVPVPTNLYGDFFTGDAYVIL-----KTVQLR-------------------NGN------- 56 (147)
T ss_dssp EEEEEEETT---------EEEECCGGGTTEEETTCEEEEE-----EEEECT-------------------TSC-------
T ss_pred eEEEEEeCC---------EEEECChHHcCeecCCCeEEEE-----EEEecC-------------------CCc-------
Confidence 356777644 5666764 45788999999985 322110 000
Q ss_pred EEEeCCceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923 242 FLLDAGLKLFIWNGPKAKNTFKSKTRLLAEK 272 (273)
Q Consensus 242 ~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~ 272 (273)
....||.|+|++|+..|+..|...|.+
T Consensus 57 ----~~~~i~~W~G~~ss~de~g~Aa~~ave 83 (147)
T 1t44_G 57 ----LQYDLHYWLGNECSQDESGAAAIFTVQ 83 (147)
T ss_dssp ----EEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ----eEEEEEEEeCCCCChhHHHHHHHHHHH
Confidence 134799999999999999988665543
No 189
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=88.85 E-value=0.26 Score=46.60 Aligned_cols=26 Identities=35% Similarity=0.713 Sum_probs=22.9
Q ss_pred eEEEEeCCceEEEEeCCCcchHhHHh
Q psy8923 240 FVFLLDAGLKLFIWNGPKAKNTFKSK 265 (273)
Q Consensus 240 ~v~~ld~~~~~~~w~G~~a~~~~~~~ 265 (273)
-|||||+|..+|+|+|+.++++--.+
T Consensus 640 giyLlD~g~~i~lw~G~~v~~~ll~d 665 (751)
T 3eh1_A 640 GAFLMDCGSVFYIWVGKGCDNNFIED 665 (751)
T ss_dssp SEEEEECSSEEEEEECTTCCHHHHHH
T ss_pred CEEEEECCCEEEEEECCCCCHHHHHH
Confidence 39999999999999999999876543
No 190
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=87.45 E-value=0.46 Score=45.34 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=23.1
Q ss_pred ceEEEEeCCceEEEEeCCCcchHhHHh
Q psy8923 239 TFVFLLDAGLKLFIWNGPKAKNTFKSK 265 (273)
Q Consensus 239 ~~v~~ld~~~~~~~w~G~~a~~~~~~~ 265 (273)
+.+||+|+|..+|+|+|+.++++--.+
T Consensus 681 ~g~yLld~G~~i~lwvg~~~~~~l~~~ 707 (810)
T 1pcx_A 681 YGLYLIDNGNELFLWMGGDAVPALVFD 707 (810)
T ss_dssp TCEEEEECSSEEEEEECTTCCHHHHHH
T ss_pred CCEEEEECCCEEEEEeCCCCCHHHHHH
Confidence 459999999999999999998775443
No 191
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=87.09 E-value=0.52 Score=44.55 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=31.4
Q ss_pred cCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHH
Q psy8923 186 PVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFL 221 (273)
Q Consensus 186 ~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~ 221 (273)
+++.+++.++.+|++|++..+|+|.|+.+++.-..-
T Consensus 630 ~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~d 665 (751)
T 3eh1_A 630 KLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIED 665 (751)
T ss_dssp CSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHH
T ss_pred cCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHH
Confidence 347889999999999999999999999999885543
No 192
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=86.30 E-value=0.45 Score=45.09 Aligned_cols=26 Identities=31% Similarity=0.746 Sum_probs=22.7
Q ss_pred eEEEEeCCceEEEEeCCCcchHhHHh
Q psy8923 240 FVFLLDAGLKLFIWNGPKAKNTFKSK 265 (273)
Q Consensus 240 ~v~~ld~~~~~~~w~G~~a~~~~~~~ 265 (273)
-|||||+|..+|+|+|+.++++--.+
T Consensus 651 giyLlD~g~~i~lw~G~~v~~~~l~d 676 (766)
T 3eh2_A 651 DIYLLENGLNLFLWVGASVQQGVVQS 676 (766)
T ss_dssp CEEEEECSSEEEEEECTTCCHHHHHH
T ss_pred cEEEEEcCcEEEEEecCCCCHHHHHH
Confidence 39999999999999999998875543
No 193
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=86.28 E-value=0.76 Score=43.85 Aligned_cols=37 Identities=32% Similarity=0.655 Sum_probs=32.7
Q ss_pred EecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHH
Q psy8923 184 PVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVF 220 (273)
Q Consensus 184 ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~ 220 (273)
.++++.+.|.++.+|++|+|..+|+|.|+.+++.-.+
T Consensus 670 ~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~l~~ 706 (810)
T 1pcx_A 670 PINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVF 706 (810)
T ss_dssp BCCSSTTSCCTTCEEEEECSSEEEEEECTTCCHHHHH
T ss_pred cccCCHHHhCcCCEEEEECCCEEEEEeCCCCCHHHHH
Confidence 4678889999999999999999999999999877443
No 194
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=85.98 E-value=0.57 Score=44.44 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=23.1
Q ss_pred eEEEEeCCceEEEEeCCCcchHhHHh
Q psy8923 240 FVFLLDAGLKLFIWNGPKAKNTFKSK 265 (273)
Q Consensus 240 ~v~~ld~~~~~~~w~G~~a~~~~~~~ 265 (273)
-|||||+|..+|+|+|+.++++-..+
T Consensus 655 giyLLD~g~~i~lw~G~~v~~~l~~~ 680 (770)
T 3efo_B 655 GIFLLANGLHMFLWLGVSSPPELIQG 680 (770)
T ss_dssp CEEEEECSSEEEEEECTTCCHHHHHH
T ss_pred cEEEEECCcEEEEEecCCCCHHHHHH
Confidence 49999999999999999999876654
No 195
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=85.76 E-value=0.59 Score=45.23 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=22.0
Q ss_pred ceEEEEeCCceEEEEeCCCcchHhH
Q psy8923 239 TFVFLLDAGLKLFIWNGPKAKNTFK 263 (273)
Q Consensus 239 ~~v~~ld~~~~~~~w~G~~a~~~~~ 263 (273)
+.+||+|+|..+|+|+|+.++++--
T Consensus 797 ~g~yLld~G~~i~lWvG~~~~p~ll 821 (926)
T 1m2v_B 797 YGLYLIDNGNELFLWMGGDAVPALV 821 (926)
T ss_dssp TCEEEEECSSEEEEEECTTCCSGGG
T ss_pred CCEEEEECCCEEEEEecCCCCHHHH
Confidence 4599999999999999999987643
No 196
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=85.69 E-value=0.68 Score=43.91 Aligned_cols=55 Identities=27% Similarity=0.438 Sum_probs=41.2
Q ss_pred eeeEEEEecCcccCCCCc-eEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHH
Q psy8923 162 TTRLYRVHAPLHQAQASS-IHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVF 220 (273)
Q Consensus 162 ~~~L~~v~g~~~~~~~~~-~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~ 220 (273)
-|+||.++.-. ... ..-..++++.+++.++.+|++|++..+|+|.|+..++.-..
T Consensus 620 yP~L~~~h~~~----~~~~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~~l~ 675 (766)
T 3eh2_A 620 YPRLLPLTKSP----VESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQ 675 (766)
T ss_dssp SCEEEECSSCC----CSCC--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHH
T ss_pred hheEEEeecCC----cccccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHHHHH
Confidence 47899887430 011 11224678899999999999999999999999999888543
No 197
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=85.25 E-value=0.84 Score=44.17 Aligned_cols=34 Identities=29% Similarity=0.592 Sum_probs=31.2
Q ss_pred EecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHH
Q psy8923 184 PVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNT 217 (273)
Q Consensus 184 ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~ 217 (273)
.++++.+.|.++.+|++|+|..+|+|.|+.+++.
T Consensus 786 ~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p~ 819 (926)
T 1m2v_B 786 PINATSSLFERYGLYLIDNGNELFLWMGGDAVPA 819 (926)
T ss_dssp CBCSCSTTCCTTCEEEEECSSEEEEEECTTCCSG
T ss_pred cccCcHHHhccCCEEEEECCCEEEEEecCCCCHH
Confidence 4678899999999999999999999999999865
No 198
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=85.10 E-value=0.73 Score=43.70 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=41.6
Q ss_pred eeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHH
Q psy8923 162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVF 220 (273)
Q Consensus 162 ~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~ 220 (273)
-|+||.++.-.. .....-..++++.+++.++.+|++|++..+|+|.|+..++.-..
T Consensus 624 yP~L~~~h~l~~---~~~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~ 679 (770)
T 3efo_B 624 YPQLLPIHTLDV---KSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQ 679 (770)
T ss_dssp SCEEEECTTCCS---SSCSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHH
T ss_pred ccceEEEecccc---ccccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHH
Confidence 478998864210 01111234678899999999999999999999999999987544
No 199
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=82.53 E-value=1.2 Score=42.36 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=37.6
Q ss_pred eeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCC
Q psy8923 162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214 (273)
Q Consensus 162 ~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s 214 (273)
.|+||.++.. . ....++++.+++.++.+|++|++..+|+|.|+..
T Consensus 624 yP~L~~~~~~------~--~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v 668 (769)
T 2nut_A 624 QPILYAYSFS------G--PPEPVLLDSSSILADRILLMDTFFQILIYHGETI 668 (769)
T ss_dssp SCEEEEECSS------S--SCEECCSSGGGCCTTCEEEEECSSEEEEEECHHH
T ss_pred cCEEEeccCC------C--CCCceeCCHHHccCCCEEEEECCCEEEEEECCcc
Confidence 4789988865 1 2456889999999999999999999999999755
No 200
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=82.05 E-value=1.1 Score=42.41 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=37.5
Q ss_pred eeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCC
Q psy8923 162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214 (273)
Q Consensus 162 ~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s 214 (273)
.|+||.++.. . ....++++..++.++.+|++|++..+|+|.|...
T Consensus 626 yP~L~~~~~~------~--~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v 670 (768)
T 1m2o_A 626 QPTLTSFSME------D--DPQPVLLDSISVKPNTILLLDTFFFILIYHGEQI 670 (768)
T ss_dssp SCEEEEECSS------S--CCEECCSBGGGCCTTCEEEEECSSEEEEEECHHH
T ss_pred CCeEEEecCC------C--CCcceeCcHHHcCCCCEEEEECCCEEEEEECCcc
Confidence 4789988755 1 2456889999999999999999999999999754
No 201
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=77.09 E-value=0.91 Score=43.09 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=18.3
Q ss_pred eEEEEeCCceEEEEeCCCcc
Q psy8923 240 FVFLLDAGLKLFIWNGPKAK 259 (273)
Q Consensus 240 ~v~~ld~~~~~~~w~G~~a~ 259 (273)
-|||||+|..||+|+|+.+.
T Consensus 652 gi~LLD~g~~i~i~~G~~v~ 671 (768)
T 1m2o_A 652 TILLLDTFFFILIYHGEQIA 671 (768)
T ss_dssp CEEEEECSSEEEEEECHHHH
T ss_pred CEEEEECCCEEEEEECCcch
Confidence 49999999999999998775
No 202
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=75.78 E-value=1.1 Score=42.39 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=18.1
Q ss_pred eEEEEeCCceEEEEeCCCcc
Q psy8923 240 FVFLLDAGLKLFIWNGPKAK 259 (273)
Q Consensus 240 ~v~~ld~~~~~~~w~G~~a~ 259 (273)
-|||||+|..||+|+|+.+.
T Consensus 650 gi~LLD~g~~i~i~~G~~v~ 669 (769)
T 2nut_A 650 RILLMDTFFQILIYHGETIA 669 (769)
T ss_dssp CEEEEECSSEEEEEECHHHH
T ss_pred CEEEEECCCEEEEEECCcch
Confidence 39999999999999998764
No 203
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.93 E-value=5.5 Score=27.07 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=37.2
Q ss_pred CCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCC
Q psy8923 30 NNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNN 80 (273)
Q Consensus 30 ~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~ 80 (273)
+..++.|. ..|.++++|+.+.+..+ ++. |... |.+|.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~--Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGL--LYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSC--CCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hhe--EcHHHHhccCCccEEEEcCCC
Confidence 35677886 88999999999999874 555 6554 5599999999987643
No 204
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=54.36 E-value=8.8 Score=29.15 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=26.2
Q ss_pred eEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923 240 FVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273 (273)
Q Consensus 240 ~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~ 273 (273)
.+||+|.|.-+|+|+|......++..+.++.++|
T Consensus 151 ~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~~L 184 (184)
T 3uma_A 151 YSMLVEDGVVKALNIEESPGQATASGAAAMLELL 184 (184)
T ss_dssp EEEEEETTEEEEEEECSSTTCCSTTSHHHHHHHC
T ss_pred EEEEECCCEEEEEEEeCCCCCCcCCCHHHHHhhC
Confidence 3788899999999999876666666666665554
No 205
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=51.83 E-value=11 Score=28.31 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=25.2
Q ss_pred eEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923 240 FVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273 (273)
Q Consensus 240 ~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~ 273 (273)
.+||+|.|.-.|+|+|.........++..+-++|
T Consensus 140 ~tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~~l 173 (173)
T 3mng_A 140 FSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 173 (173)
T ss_dssp EEEEEETTEEEEEEECTTSSCSSTTSHHHHHHHC
T ss_pred EEEEEECCEEEEEEEeCCCCCcchHHHHHHHHhC
Confidence 5899998889999999876555566665555443
No 206
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=38.11 E-value=38 Score=25.34 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=24.0
Q ss_pred eEEEEeCCceEEEEeCCCcchHhHHhHHHHhh
Q psy8923 240 FVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAE 271 (273)
Q Consensus 240 ~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~ 271 (273)
.+||+|.|.-.|+|+........+..+-++.+
T Consensus 136 ~tfvIddG~V~~~~v~~~~~~~~~s~a~~vL~ 167 (171)
T 2xhf_A 136 YAMLIDDNKIRSVSTEPDITGLACLLSIQRQK 167 (171)
T ss_dssp EEEEEETTEEEEEEETTSCSHHHHHHHHHHC-
T ss_pred EEEEEeCCEEEEEEEeCCCCcccCCCHHHHHH
Confidence 58999999999999987666556666655543
No 207
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=33.72 E-value=17 Score=25.84 Aligned_cols=24 Identities=8% Similarity=-0.097 Sum_probs=14.5
Q ss_pred CCceEEEEeCCC-cchHhHHhHHHH
Q psy8923 246 AGLKLFIWNGPK-AKNTFKSKTRLL 269 (273)
Q Consensus 246 ~~~~~~~w~G~~-a~~~~~~~~~~~ 269 (273)
..+.||||+|.+ --+....+|.++
T Consensus 68 ~~~~V~v~lG~g~~vE~~~~eA~~~ 92 (133)
T 1fxk_C 68 DTSEVIMSVGAGVAIKKNFEDAMES 92 (133)
T ss_dssp STTEEEEEEETTEEEEEEHHHHHHH
T ss_pred CCCEEEEEcCCCEEEEeeHHHHHHH
Confidence 345799999964 344444455443
No 208
>3fuy_A HFX_CASS1, putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 2.00A {Uncultured bacterium}
Probab=31.08 E-value=38 Score=23.62 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=19.1
Q ss_pred EEEEeCCCcchHhHHhHHHHhhh
Q psy8923 250 LFIWNGPKAKNTFKSKTRLLAEK 272 (273)
Q Consensus 250 ~~~w~G~~a~~~~~~~~~~~~~~ 272 (273)
|=+.+|.+|++-||+-|-++|++
T Consensus 111 vdlivgtgaseveretaeelake 133 (179)
T 3fuy_A 111 VDLIVGTGASEVERETAEELAKE 133 (179)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHH
T ss_pred EEEEeecChhHHhHHHHHHHHHH
Confidence 33578999999999999888863
No 209
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=30.41 E-value=32 Score=25.39 Aligned_cols=33 Identities=6% Similarity=-0.060 Sum_probs=23.1
Q ss_pred eEEEEeCCceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923 240 FVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEK 272 (273)
Q Consensus 240 ~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~ 272 (273)
..+++|.|.-+|+|+|.......+..+.++.++
T Consensus 138 ~t~~I~~G~I~~~~~~~~~~~~~~~~~~~il~~ 170 (171)
T 2pwj_A 138 WSAYVVDGKVKALNVEESPSDVKVSGAETILGQ 170 (171)
T ss_dssp EEEEEETTEEEEEEECSSTTCCSSSSHHHHHHH
T ss_pred eEEEEECCEEEEEEeecCCCCCcccCHHHHHhc
Confidence 466667899999999987655555566555444
No 210
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.70 E-value=24 Score=25.78 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=13.7
Q ss_pred CceEEEEeCCC-cchHhHHhHHHH
Q psy8923 247 GLKLFIWNGPK-AKNTFKSKTRLL 269 (273)
Q Consensus 247 ~~~~~~w~G~~-a~~~~~~~~~~~ 269 (273)
.+.|+||+|.+ --+....+|.++
T Consensus 79 ~~~V~v~lG~g~~vE~~~~eA~~~ 102 (151)
T 2zdi_C 79 KNNAIVSVGSGYAVERSIDEAISF 102 (151)
T ss_dssp TTEEEEEEETTEEEEEEHHHHHHH
T ss_pred CCEEEEEeCCCeEEEecHHHHHHH
Confidence 35799999965 334444444443
No 211
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=25.83 E-value=42 Score=24.30 Aligned_cols=17 Identities=18% Similarity=-0.054 Sum_probs=15.2
Q ss_pred eEEEEeCCceEEEEeCC
Q psy8923 240 FVFLLDAGLKLFIWNGP 256 (273)
Q Consensus 240 ~v~~ld~~~~~~~w~G~ 256 (273)
.+||+|.|.-+|.|+|.
T Consensus 130 ~~~vid~G~i~~~~~~~ 146 (162)
T 1tp9_A 130 FALLVDDLKVKAANIEG 146 (162)
T ss_dssp EEEEEETTEEEEEEECS
T ss_pred EEEEEECCEEEEEEeeC
Confidence 58999988999999997
No 212
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=25.46 E-value=68 Score=22.91 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=20.0
Q ss_pred eEEEEe-CCceEEEEeCCCcchHhHHhHHHH
Q psy8923 240 FVFLLD-AGLKLFIWNGPKAKNTFKSKTRLL 269 (273)
Q Consensus 240 ~v~~ld-~~~~~~~w~G~~a~~~~~~~~~~~ 269 (273)
.+||+| .|.-++.|.|....+..-.+.++.
T Consensus 113 ~~~lid~~G~i~~~~~g~~~~~~~~~~il~~ 143 (161)
T 3drn_A 113 ITFVIDKKGIIRHIYNSQMNPANHVNEALKA 143 (161)
T ss_dssp EEEEECTTSBEEEEEECSSCTTHHHHHHHHH
T ss_pred eEEEECCCCEEEEEEecCCCCCcCHHHHHHH
Confidence 589998 678889999954444444444433
Done!