RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8923
(273 letters)
>gnl|CDD|200446 cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin_like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 113
Score = 91.5 bits (228), Expect = 2e-23
Identities = 27/54 (50%), Positives = 33/54 (61%)
Query: 94 TKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGG 147
+A+ D+ +AI AV L ++L RE QG ESEEFLS F GI YIEGG
Sbjct: 60 KEASQDEAGAAAIKAVELDDYLGGRPVQHREVQGHESEEFLSYFKKGIIYIEGG 113
>gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in
gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 88
Score = 52.4 bits (126), Expect = 4e-09
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNG 211
RLYRV + +I +E VP+ S SLD VF+LD G +++IW G
Sbjct: 2 PRLYRVRG------SKAIEIEEVPLASSSLDSDDVFVLDTGSEIYIWQG 44
Score = 35.8 bits (83), Expect = 0.003
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLF 137
++ + A +A+ A L + +R QG E EF SLF
Sbjct: 46 ASSQAELAAAALLAKELDEERKGKPEIVRIRQGQEPREFWSLF 88
>gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain. Gelsolin/severin/villin
homology domain. Calcium-binding and actin-binding. Both
intra- and extracellular domains.
Length = 90
Score = 43.4 bits (103), Expect = 5e-06
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 180 IHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
+ + VP SL+ ++LD G ++++W G K+
Sbjct: 11 VRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKS 45
Score = 40.0 bits (94), Expect = 1e-04
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIRE-EQGDESEEFLSLF 137
K++ D++ +A AV L + L +R ++G E EF SLF
Sbjct: 44 KSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLF 87
Score = 36.9 bits (86), Expect = 0.001
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 207 FIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNT-FVFLLDAGLKLFIWNGPKAKNTFKSK 265
F+ +N V + N+ ++LD G ++++W G K+ K K
Sbjct: 1 FLVRVKGKRNVRVPEVPFSQGSL--------NSGDCYILDTGSEIYVWVGKKSSQDEKKK 52
Query: 266 TRLLAEKI 273
LA ++
Sbjct: 53 AAELAVEL 60
>gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat.
Length = 76
Score = 40.7 bits (96), Expect = 4e-05
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 183 EPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
PVP+ ESL+ +LLD G +F+W G +
Sbjct: 6 PPVPLSQESLNSGDCYLLDTGFTIFLWVGKGS 37
Score = 31.1 bits (71), Expect = 0.086
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 95 KATLDKRACSAIHAVNLR-NFLAAECRTIREEQGDESEEFL 134
++ D++ +A+ A + + R QG E FL
Sbjct: 36 GSSPDEKLFAALLAAQIDLDERFPLPEVDRVVQGKEPARFL 76
Score = 30.0 bits (68), Expect = 0.29
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 215 KNTFVFLLDAGLKLFIWNGPKA 236
+ +LLD G +F+W G +
Sbjct: 16 NSGDCYLLDTGFTIFLWVGKGS 37
Score = 30.0 bits (68), Expect = 0.29
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 237 KNTFVFLLDAGLKLFIWNGPKA 258
+ +LLD G +F+W G +
Sbjct: 16 NSGDCYLLDTGFTIFLWVGKGS 37
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 43.4 bits (102), Expect = 6e-05
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
++L + N+L L L+ L L L+L NKI + +P ++ L L LDLS+N+I +
Sbjct: 166 KNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD--LPPEIELLSALEELDLSNNSIIE 223
Query: 84 IPDALENAKR 93
+ +L N K
Sbjct: 224 LLSSLSNLKN 233
Score = 38.0 bits (88), Expect = 0.003
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 24 EHLSIVNNNLEKLFGELTELQC-LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
L + NNN+ + + L+ L+ L+L NKI++ +P L +L +L LDLS N++
Sbjct: 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLS 176
Query: 83 QIPDALENAK 92
+P L N
Sbjct: 177 DLPKLLSNLS 186
Score = 35.3 bits (81), Expect = 0.026
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+L + N + L E+ L L L+L N I + L +L++L+ L+LS+N ++
Sbjct: 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNKLED 246
Query: 84 IPDALEN 90
+P+++ N
Sbjct: 247 LPESIGN 253
Score = 33.8 bits (77), Expect = 0.094
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L + NN++ +L L+ L+ L L L NK+++ + L +L TLDLS+N I
Sbjct: 212 EELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSNLETLDLSNNQISS 269
Query: 84 IPDALENAKRTKATLDK 100
I + L
Sbjct: 270 ISSLGSLTNLRELDLSG 286
Score = 31.5 bits (71), Expect = 0.41
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
L + NN LE L + L L TL+L N+I + L L +L LDLS N++
Sbjct: 237 LELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLSNAL 293
Score = 31.1 bits (70), Expect = 0.56
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 14 KSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTT 73
S + + LS + L L L +L+L N+++++ L L +LT+
Sbjct: 63 PSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISE--LLELTNLTS 120
Query: 74 LDLSHNNIKQIPDALENAKRTKATLD 99
LDL +NNI IP + K LD
Sbjct: 121 LDLDNNNITDIPPLIGLLKSNLKELD 146
>gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 92
Score = 40.3 bits (95), Expect = 7e-05
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
RL V + + V + SL+ VF+LD G ++ WNG K+
Sbjct: 2 PRLLHVKGRRN------VRAREVELSWSSLNSGDVFILDLGSTIYQWNGSKS 47
Score = 38.8 bits (91), Expect = 3e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 241 VFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273
VF+LD G ++ WNG K+ K+K LA+ I
Sbjct: 30 VFILDLGSTIYQWNGSKSNRFEKAKAMQLAQGI 62
Score = 35.3 bits (82), Expect = 0.005
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 219 VFLLDAGLKLFIWNGPKA 236
VF+LD G ++ WNG K+
Sbjct: 30 VFILDLGSTIYQWNGSKS 47
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number
of proteins with diverse functions and cellular
locations. These repeats are usually involved in
protein-protein interactions. Each Leucine Rich Repeat
is composed of a beta-alpha unit. These units form
elongated non-globular structures. Leucine Rich Repeats
are often flanked by cysteine rich domains.
Length = 43
Score = 39.0 bits (92), Expect = 8e-05
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
L TL+L N+I + +P L +L +L TLDLS N I +
Sbjct: 3 LETLDLSNNQITD--LP-PLSNLPNLETLDLSGNKITDLS 39
Score = 32.8 bits (76), Expect = 0.010
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN 58
E L + NN + L L+ L L TL+L NKI +
Sbjct: 4 ETLDLSNNQITDL-PPLSNLPNLETLDLSGNKITD 37
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 38.3 bits (90), Expect = 2e-04
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQIP 85
L++L+L N++ IP F L +L LDLS NN+ I
Sbjct: 2 LKSLDLSNNRLTV--IPDGAFKGLPNLKVLDLSGNNLTSIS 40
Score = 37.9 bits (89), Expect = 2e-04
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 24 EHLSIVNNNLEKLFGELTE-LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
+ L + NN L + + L L+ L+L N + S P L L +LDLS NN+
Sbjct: 3 KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 98
Score = 36.1 bits (84), Expect = 0.003
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 162 TTRLYRVHAPLHQAQASSIHLEPV---PVLSESLDPRFVFLLDAGLKLFIWNGPKAKNT 217
+LY+V + + L V + E LD ++LD G ++F+W G A
Sbjct: 3 QKKLYKV-----SDASGKLKLTEVAEGSLNQEMLDSEDCYILDCGSEIFVWVGKGASLD 56
Score = 29.5 bits (67), Expect = 0.59
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 215 KNTFVFLLDAGLKLFIWNGPKAKNT 239
+ ++LD G ++F+W G A
Sbjct: 32 DSEDCYILDCGSEIFVWVGKGASLD 56
Score = 29.5 bits (67), Expect = 0.59
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 237 KNTFVFLLDAGLKLFIWNGPKAKNT 261
+ ++LD G ++F+W G A
Sbjct: 32 DSEDCYILDCGSEIFVWVGKGASLD 56
>gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 92
Score = 35.7 bits (83), Expect = 0.003
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
TRL++V + + V + SL+ VF+L +++W G +
Sbjct: 2 PTRLFQVRGNG----SGNTRAVEVDADASSLNSNDVFVLKTPSSVYLWVGKGS 50
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 37.5 bits (87), Expect = 0.006
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 24 EHLSIVNNNLE-KLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
E L + +NN K+ LT L L+ L L NK + IP +L +LT LDLS NN+
Sbjct: 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF-SGEIPKNLGKHNNLTVLDLSTNNLT 369
Query: 83 -QIPDAL 88
+IP+ L
Sbjct: 370 GEIPEGL 376
Score = 35.2 bits (81), Expect = 0.035
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 25 HLSIVNNNLE----KLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
HL +V NNL G L LQ L L NK+ IP +F L+ L +LDLS N+
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQ---YLFLYQNKLSGP-IPPSIFSLQKLISLDLSDNS 295
Query: 81 IK-QIPD 86
+ +IP+
Sbjct: 296 LSGEIPE 302
Score = 34.8 bits (80), Expect = 0.043
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 37 FGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNIK-QIPDA 87
G L+EL L L NK+ SG IP +L + L +LDLSHN + QIP +
Sbjct: 495 LGSLSELM---QLKLSENKL--SGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542
Score = 32.5 bits (74), Expect = 0.25
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 39 ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALENAK 92
EL +++ L+ + L YN + + IP ++ L L LDL +NN+ IP +L N K
Sbjct: 207 ELGQMKSLKWIYLGYNNL-SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260
Score = 31.4 bits (71), Expect = 0.54
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 24 EHLSIVNNNLEKLFGELTEL---QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
+ LS+ N K FG L + + L L+L N+ + +P L L +L L LS N
Sbjct: 455 QMLSLARN---KFFGGLPDSFGSKRLENLDLSRNQFSGA-VPRKLGSLSELMQLKLSENK 510
Query: 81 IK-QIPDALENAKR 93
+ +IPD L + K+
Sbjct: 511 LSGEIPDELSSCKK 524
Score = 30.6 bits (69), Expect = 1.1
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 15 SESVTIGLTEHLSIVNNNLE-KLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTT 73
SE + L L I NNNL+ ++ ++ L+ L+L NK G+P D F + L
Sbjct: 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF-FGGLP-DSFGSKRLEN 479
Query: 74 LDLSHNNIKQ-IPDALEN 90
LDLS N +P L +
Sbjct: 480 LDLSRNQFSGAVPRKLGS 497
Score = 27.9 bits (62), Expect = 7.5
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 39 ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALEN 90
EL+ + L +L+L +N++ + IP + L+ LDLS N + +IP L N
Sbjct: 518 ELSSCKKLVSLDLSHNQL-SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569
Score = 27.9 bits (62), Expect = 7.9
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 9/59 (15%)
Query: 28 IVNNNLE--KLFGEL----TELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHN 79
+V+ +L +L G++ +E+ L L+L N++ SG IP +L ++E L +++SHN
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL--SGEIPKNLGNVESLVQVNISHN 581
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 37.1 bits (86), Expect = 0.008
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 26 LSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-Q 83
L + N L ++++L+ L+++NL N I+ IP L + L LDLS+N+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 84 IPDAL 88
IP++L
Sbjct: 482 IPESL 486
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 29.6 bits (68), Expect = 0.098
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 68 LEDLTTLDLSHNNIKQIPDAL 88
L +L LDLS+N + +P
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 24.2 bits (54), Expect = 7.9
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFH 67
L LR L+L N++ + +P F
Sbjct: 1 LPNLRELDLSNNQLSS--LPPGAFQ 23
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most
populated) subfamily.
Length = 24
Score = 29.6 bits (68), Expect = 0.098
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 68 LEDLTTLDLSHNNIKQIPDAL 88
L +L LDLS+N + +P
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 24.2 bits (54), Expect = 7.9
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFH 67
L LR L+L N++ + +P F
Sbjct: 1 LPNLRELDLSNNQLSS--LPPGAFQ 23
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 33.5 bits (77), Expect = 0.11
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 20 IGLTEHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSG---IPVDLFHLEDL 71
+ L++ NN + L L L L+L N + + G + L L+ L
Sbjct: 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223
Query: 72 TTLDLSHNNI 81
L+L NN+
Sbjct: 224 EVLNLGDNNL 233
Score = 32.7 bits (75), Expect = 0.15
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 24 EHLSIVNNNLE-----KLFGELTELQCLRTLNLRYNKIKNSGI----PVDLFHLEDLTTL 74
E L + NN L L L L+ L LNL N + ++G L L TL
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255
Query: 75 DLSHNNIKQ 83
LS N+I
Sbjct: 256 SLSCNDITD 264
Score = 30.4 bits (69), Expect = 0.82
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 24 EHLSIVNNNL------EKLFGELTELQCLRTLNLRYNKIKNSGIPVDL----FHLEDLTT 73
E L++ +NNL L+ L TL+L N I + G DL E L
Sbjct: 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA-KDLAEVLAEKESLLE 282
Query: 74 LDLSHNNIKQ 83
LDL N +
Sbjct: 283 LDLRGNKFGE 292
Score = 28.1 bits (63), Expect = 4.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 33 LEKLFGELTELQCLRTLNLRYNKIKNSGIPV---DLFHLEDLTTLDLSHNNI 81
E L L + L+ LNL N I ++GI L +L LDL++N +
Sbjct: 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205
>gnl|CDD|200449 cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 101
Score = 31.5 bits (72), Expect = 0.13
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLF 137
++ D+RA +A+ V L L +R QG E FL+LF
Sbjct: 59 HSSQDERAAAALLTVELDEELKGRAVQVRVVQGKEPPHFLALF 101
>gnl|CDD|201305 pfam00560, LRR_1, Leucine Rich Repeat. CAUTION: This Pfam may
not find all Leucine Rich Repeats in a protein. Leucine
Rich Repeats are short sequence motifs present in a
number of proteins with diverse functions and cellular
locations. These repeats are usually involved in
protein-protein interactions. Each Leucine Rich Repeat
is composed of a beta-alpha unit. These units form
elongated non-globular structures. Leucine Rich Repeats
are often flanked by cysteine rich domains.
Length = 22
Score = 29.1 bits (66), Expect = 0.17
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 71 LTTLDLSHNNIKQIPDALEN 90
L LDLS+NN+ +P +L N
Sbjct: 2 LEELDLSNNNLSSLPPSLGN 21
>gnl|CDD|227810 COG5523, COG5523, Predicted integral membrane protein [Function
unknown].
Length = 271
Score = 30.6 bits (69), Expect = 0.75
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 194 PRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAK-NTFVFLLDAGLKLFI 252
V L + F+W+ F+ I N + V L+ GL+L
Sbjct: 89 TTLVLYLLIKIFRFLWSLIAFVPIFIIFYSGSASKIILNLSASDVVIEVALMLFGLRLIG 148
Query: 253 W 253
Sbjct: 149 L 149
>gnl|CDD|197684 smart00365, LRR_SD22, Leucine-rich repeat, SDS22-like subfamily.
Length = 22
Score = 26.5 bits (60), Expect = 1.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 68 LEDLTTLDLSHNNIKQI 84
L +L LDL N IK+I
Sbjct: 1 LTNLEELDLGDNKIKKI 17
>gnl|CDD|132676 TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype
I-F/YPEST. The CRISPR-associated protein Cas1 is
virtually universal to CRISPR systems. CRISPR, an
acronym for Clustered Regularly Interspaced Short
Palindromic Repeats, is prokaryotic immunity system for
foreign DNA, mostly from phage. CRISPR systems belong to
different subtypes, distinguished by both nature of the
repeats, the makeup of the cohort of associated Cas
proteins, and by molecular phylogeny within the more
universal Cas proteins such as this one. This model is
of type EXCEPTION and provides more specific information
than the EQUIVALOG model TIGR00287. It describes the
Cas1 protein particular to the YPEST subtype of
CRISPR/Cas system.
Length = 307
Score = 29.8 bits (67), Expect = 1.4
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 172 LHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAG 225
LH +A+ +LE VL R ++ D G + WN P A NT V LL G
Sbjct: 2 LHSKRANIYYLEKCRVLVN--GGRVEYVTDEGNESLYWNIPIA-NTTVLLLGTG 52
>gnl|CDD|187849 cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas1 is the most universal CRISPR system protein thought
to be involved in spacer integration; Cas1 is
metal-dependent deoxyribonuclease, also binds RNA; Shown
to possess a unique fold consisting of a N-terminal
beta-strand domain and a C-terminal alpha-helical
domain.
Length = 306
Score = 29.7 bits (67), Expect = 1.4
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 172 LHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAG 225
LH +A+ +LE VL R ++ D G + WN P A NT V LL G
Sbjct: 2 LHSKRANIYYLEKCRVLVN--GGRVEYVTDEGNESLYWNIPIA-NTTVLLLGTG 52
>gnl|CDD|99910 cd05568, PTS_IIB_bgl_like, PTS_IIB_bgl_like: the PTS
(phosphotransferase system) IIB domain of a family of
sensory systems composed of a membrane-bound
sugar-sensor (similar to BglF) and a transcription
antiterminator (similar to BglG) which regulate
expression of genes involved in sugar utilization. The
domain architecture of the IIB-containing protein
includes a region N-terminal to the IIB domain which is
homologous to the BglG transcription antiterminator
with an RNA-binding domain followed by two homologous
domains, PRD1 and PRD2 (PTS Regulation Domains).
C-terminal to the IIB domain is a domain similar to the
PTS IIA domain. In this system, the BglG-like region
and the IIB and IIA-like domains are all expressed
together as a single multidomain protein. The IIB
domain fold includes a central four-stranded parallel
open twisted beta-sheet flanked by alpha-helices on
both sides. The seven major PTS systems with this IIB
fold include this sensory system with similarity to the
bacterial bgl system, chitobiose/lichenan, ascorbate,
lactose, galactitol, mannitol, and fructose systems.
Length = 85
Score = 27.9 bits (63), Expect = 1.7
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 28 IVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
++ + L+KLF E+ + + L + + DL ++T+ L + I
Sbjct: 16 LLKSKLKKLFPEIEIIDVISLRELEEVDLDD----YDLI----ISTVPLEDTDKPVI 64
>gnl|CDD|205144 pfam12913, SH3_6, SH3 domain of the SH3b1 type. This domain
appears to be an SH3 domain of the SH3b1-type, and is
just C-terminal to an N-terminal domain that is probably
the stabilising domain for the structure PDB:3m1u, which
is a four-domain protein. The next domain is an SH3b2
and the last, the C-terminal region, is the catalytic
domain of the cysteine-peptidase type, ie family
NLPC_P60, pfam00877 (details derived from TOPSAN).
Length = 54
Score = 26.8 bits (60), Expect = 2.4
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 171 PLHQAQASSIHL-EPVPVLSESLDPRFVF 198
P Q S++H PV +L S D + F
Sbjct: 14 PFDYLQESALHPGTPVYILHRSKDGAWAF 42
>gnl|CDD|220967 pfam11073, NSs, Rift valley fever virus non structural protein
(NSs) like. This family contains several Phlebovirus
non structural proteins which act as a major determinant
of virulence by antagonising interferon beta gene
expression.
Length = 238
Score = 28.8 bits (65), Expect = 2.6
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 36 LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAK 92
L E+ +QC+R LN + +S P LF + S + P L N K
Sbjct: 181 LIKEIAYVQCVRLLNALPKDLSDSCCPSPLFDILMSQKEVFS----SENPSILGNKK 233
>gnl|CDD|117627 pfam09062, Endonuc_subdom, PI-PfuI Endonuclease subdomain. The
endonuclease subdomain, found in the prokaryotic
protein ribonucleotide reductase, assumes an
alpha-beta-beta-alpha-beta-beta-alpha-alpha topology.
The four stranded beta-sheet forms a saddle-shaped
surface and assembles together through an interface
made of alpha-helices. The presence of 14 basic
residues on the surface of the beta-sheets suggests
that this large groove may be involved in DNA binding.
Length = 98
Score = 27.5 bits (60), Expect = 3.0
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED 70
E I+N+ LEK FG +Q + N+ Y IK I L +
Sbjct: 48 IETFEIINDYLEKTFGRKYSIQ--KDRNIYYIDIKARNITSHYLELLE 93
>gnl|CDD|227483 COG5154, BRX1, RNA-binding protein required for 60S ribosomal
subunit biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 283
Score = 28.4 bits (63), Expect = 4.3
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF--HLEDLTTLDLSHNNIK 82
+ + N F + L + LN N +K S PV F ED+ L + ++
Sbjct: 100 MGARIPNGPTVKF-RMHNLHTMDELNFTGNSLKGSR-PVLSFDKEFEDIPHLKYAKELLE 157
Query: 83 QIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEE 132
I + A+R+K +DK C I L + C I E D+S++
Sbjct: 158 HIFGIPKGARRSKPFIDKVLCFFI----LDGKIWVRCYEIGRENEDKSKD 203
>gnl|CDD|226034 COG3503, COG3503, Predicted membrane protein [Function unknown].
Length = 323
Score = 28.1 bits (63), Expect = 5.0
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 196 FVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIW 231
FL AG+ L + + + FL+ GLKL
Sbjct: 64 SSFLFLAGVSLSLS-HSRGLRRWRFLVKRGLKLAAL 98
Score = 28.1 bits (63), Expect = 5.0
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 218 FVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIW 253
FL AG+ L + + + FL+ GLKL
Sbjct: 64 SSFLFLAGVSLSLS-HSRGLRRWRFLVKRGLKLAAL 98
>gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 99
Score = 26.5 bits (59), Expect = 5.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 190 ESLDPRFVFLLDAGLKLFIWNGPKA 214
+ LD + LLD G ++F+W G ++
Sbjct: 25 DDLDTDDIMLLDTGDEVFVWVGSES 49
>gnl|CDD|234959 PRK01550, truB, tRNA pseudouridine synthase B; Provisional.
Length = 304
Score = 28.0 bits (63), Expect = 5.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 148 RTASGFFTVEDTV 160
RTASG FT+ED +
Sbjct: 200 RTASGGFTLEDCL 212
>gnl|CDD|205682 pfam13504, LRR_7, Leucine rich repeat.
Length = 17
Score = 24.4 bits (54), Expect = 7.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 71 LTTLDLSHNNIKQIP 85
L TLDLS+N + +P
Sbjct: 3 LRTLDLSNNRLTSLP 17
>gnl|CDD|235096 PRK02991, PRK02991, D-serine dehydratase; Provisional.
Length = 441
Score = 27.5 bits (62), Expect = 7.4
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 148 RTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEP 184
R G +TV D LYR+ L + I LEP
Sbjct: 352 RLLDGVYTVSD----ETLYRLLGLLADTE--GIRLEP 382
>gnl|CDD|197686 smart00368, LRR_RI, Leucine rich repeat, ribonuclease inhibitor
type.
Length = 28
Score = 24.3 bits (54), Expect = 9.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 45 CLRTLNLRYNKIKNSGI 61
LR L+L NK+ + G
Sbjct: 3 SLRELDLSNNKLGDEGA 19
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.402
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,690,779
Number of extensions: 1302513
Number of successful extensions: 1123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1100
Number of HSP's successfully gapped: 69
Length of query: 273
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 178
Effective length of database: 6,723,972
Effective search space: 1196867016
Effective search space used: 1196867016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.8 bits)