RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8923
(273 letters)
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding
protein, protein D packing, contractIle protein; 2.50A
{Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1
d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A
3ffk_A* 1rgi_G*
Length = 729
Score = 105 bits (262), Expect = 1e-25
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
+ + D+ +AI V L ++L RE QG ES FL F +G+ Y +GG +
Sbjct: 66 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKH 125
Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
V + V RL +V + VPV ES + F+LD G ++ W G K+
Sbjct: 126 VVPNEVVVQRLLQVKGRRV------VRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKS 179
Query: 215 K 215
Sbjct: 180 N 180
Score = 83.4 bits (205), Expect = 2e-18
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
++T D+ A SAI L L R QG E +SLF + G T+
Sbjct: 444 QSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGGTSREGG 503
Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
+TRL++V A + + + + + +L+ F+L ++W G A
Sbjct: 504 QTAPA--STRLFQVRA----SSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGA 557
Score = 47.6 bits (112), Expect = 2e-06
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
A+ ++ + LR + + E G E + F +Y R
Sbjct: 556 GASEAEKTGAQELLRVLRA----QPVQVAE--GSEPDSFWEALGGKATYRTSPRLKD--- 606
Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
+ + RL+ + + + P + E L V LLD ++F+W G +
Sbjct: 607 -KKMDAHPPRLFACSNKIGRFVIEEV---PGEFMQEDLATDDVMLLDTWDQVFVWVGKDS 662
Score = 44.5 bits (104), Expect = 2e-05
Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 6/124 (4%)
Query: 95 KATLDKRACSAIHAVNLR-NFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
K+ +R + + +R N + + E+G E E L + + E
Sbjct: 178 KSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQVLGPKPTLPEATE--DTV 235
Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAG--LKLFIWNG 211
+LY+V S + + P +L F+LD G K+F+W G
Sbjct: 236 KEDAANRKLAKLYKVSNGAGPMVVS-LVADENPFAQGALRSEDCFILDHGKDGKIFVWKG 294
Query: 212 PKAK 215
+A
Sbjct: 295 KQAN 298
Score = 27.6 bits (60), Expect = 5.2
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 241 VFLLDAGLKLFIWNGPKA 258
V LLD ++F+W G +
Sbjct: 645 VMLLDTWDQVFVWVGKDS 662
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS
structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1
d.109.1.1 d.109.1.1 PDB: 1jhw_A
Length = 347
Score = 102 bits (255), Expect = 1e-25
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
+++ D++ A+ AV L ++L RE QG+ES+ F+S F G+ Y EGG +
Sbjct: 68 QSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGGVESGFKH 127
Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
V + V RLY+V + I + +S + F+LD G +F W G K+
Sbjct: 128 VVPNEVVVQRLYQVKGKKN------IRATERALNWDSFNTGDCFILDLGQNIFAWCGGKS 181
Query: 215 KNT 217
Sbjct: 182 NIL 184
Score = 49.9 bits (118), Expect = 3e-07
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 95 KATLDKRACSAIHAVNLR-NFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
K+ + +R + A+ +R + + + G+E E + + ++ G
Sbjct: 180 KSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLG-PKPALKEGNPEEDL 238
Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGL--KLFIWNG 211
+ LY+V Q + + + P E L F+LD GL K++IW G
Sbjct: 239 TADKANAQAAALYKVSDATGQMNLTKVA-DSSPFALELLISDDCFVLDNGLCGKIYIWKG 297
Query: 212 PKA 214
KA
Sbjct: 298 RKA 300
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP:
d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A
2fh4_A 1h1v_G* 1nph_A
Length = 344
Score = 85.6 bits (211), Expect = 2e-19
Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
++T D+ A SAI L L R QG E +SLF I G T+
Sbjct: 59 QSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGG 118
Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
+TRL++V A A + V + +L+ F+L ++W G A
Sbjct: 119 QTAPA--STRLFQVRA----NSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGA 172
Score = 43.3 bits (101), Expect = 4e-05
Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 13/120 (10%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
A+ ++ + LR + + E G E + F +Y RT+
Sbjct: 171 GASEAEKTGAQELLRVLRA----QPVQVAE--GSEPDGFWEALGGKAAY----RTSPRLK 220
Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
+ + RL+ ++ I P ++ E L V LLD ++F+W G +
Sbjct: 221 DKKMDAHPPRLFACS---NKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDS 277
Score = 27.5 bits (60), Expect = 5.0
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 241 VFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEK 272
V LLD ++F+W G ++ K++ A++
Sbjct: 260 VMLLDTWDQVFVWVGKDSQEEEKTEALTSAKR 291
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin
beta-4; structural protein; HET: ATP; 2.00A {Homo
sapiens} SCOP: d.109.1.1
Length = 147
Score = 76.2 bits (187), Expect = 2e-17
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
+ + D+ +AI V L ++L RE QG ES FL F +G+ Y +GG ASGF
Sbjct: 68 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFK 126
Query: 155 TVEDTVY----TTRLYR 167
VE +
Sbjct: 127 HVETQEKNPLPSKETIE 143
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping,
actin-binding, calcium, cytoplasm, cytoskeleton,
structural protein; 2.00A {Homo sapiens}
Length = 398
Score = 79.1 bits (194), Expect = 5e-17
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
+A+ D+ SA AV L E IR G E +S+F + +GG S
Sbjct: 114 QASQDEITASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIFKGRMVVYQGGT--SRTN 171
Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
+E +TRL++V A++ VP + L+ VF+L ++W G
Sbjct: 172 NLETG-PSTRLFQVQG----TGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGC 226
Score = 41.8 bits (97), Expect = 1e-04
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 16/121 (13%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
+ D+R + + A + +G E F Y R
Sbjct: 225 GCSGDEREMAKMVADTISR-----TEKQVVVEGQEPANFWMALGGKAPYANTKRLQE--- 276
Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLS-ESLDPRFVFLLDAGLKLFIWNGPK 213
E+ V T RL+ + +P + + L+ VFLLD ++F W G
Sbjct: 277 --ENLVITPRLFECSN-----KTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKH 329
Query: 214 A 214
A
Sbjct: 330 A 330
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl
histidine, ATP-binding, cytoskeleton, nucleotide-BIN
phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP:
d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A*
1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S*
1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S*
3a5o_S*
Length = 128
Score = 73.4 bits (180), Expect = 1e-16
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
+ + D+ +AI V L ++L RE QG ES FL F +G+ Y +GG ASGF
Sbjct: 71 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGF 128
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP:
d.109.1.1 PDB: 1svr_A 1svy_A
Length = 114
Score = 72.2 bits (177), Expect = 3e-16
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 151 SGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWN 210
SGF V+ T Y RL + + + VP+ + SL+ FLLDAGL ++ +N
Sbjct: 1 SGFNHVKPTEYKPRLLHISG------DKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFN 54
Query: 211 GPKAK 215
G K+
Sbjct: 55 GSKSS 59
Score = 32.5 bits (74), Expect = 0.038
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 95 KATLDKRACSAIHAVNLRNF--LAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTA 150
K++ ++ +A A + + E D EF L + TA
Sbjct: 57 KSSPQEKNKAAEVARAIDAERKGLPKVEVFCETDSDIPAEFWKLLGGKGAIAAKHETA 114
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle
protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP:
d.109.1.1 PDB: 2ff6_G*
Length = 150
Score = 72.7 bits (178), Expect = 4e-16
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
+ + D+ +AI V L ++L RE QG ES FL F +G+ Y +GG ASGF
Sbjct: 90 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFK 148
Query: 155 TV 156
V
Sbjct: 149 HV 150
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding
protein, cytoskeletal protein; NMR {Gallus gallus} SCOP:
d.109.1.1 PDB: 2vil_A
Length = 126
Score = 70.8 bits (173), Expect = 1e-15
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
++ D++ +AI+ + +L + RE QG ESE F + F G+ Y +GG ASG
Sbjct: 68 NSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGG-VASGM 125
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping,
actin-binding, cytos phosphoprotein, actin-binding
protein; 3.00A {Homo sapiens}
Length = 371
Score = 73.3 bits (179), Expect = 4e-15
Identities = 35/121 (28%), Positives = 46/121 (38%), Gaps = 7/121 (5%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
AT D+ SA V L L + IR QG E LSLF I T+
Sbjct: 100 NATRDELTTSAFLTVQLDRSLGGQAVQIRVSQGKEPVHLLSLFKDKPLIIYKNGTSKKGG 159
Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGL-KLFIWNGPK 213
+ TRL++V L + V V + SL+ VF+L +IW G
Sbjct: 160 --QAPAPPTRLFQVRRNLAS----ITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKG 213
Query: 214 A 214
A
Sbjct: 214 A 214
Score = 47.2 bits (111), Expect = 3e-06
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 119 CRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQAS 178
C+T+R ++G+E EEF + Y S + + RLY ++
Sbjct: 231 CKTLRIQEGEEPEEFWNSLGGKKDYQT-----SPLLETQAEDHPPRLYGCS---NKTGRF 282
Query: 179 SIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
I P + L V LLDA ++FIW G A
Sbjct: 283 VIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDA 318
Score = 28.3 bits (62), Expect = 3.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 241 VFLLDAGLKLFIWNGPKA 258
V LLDA ++FIW G A
Sbjct: 301 VMLLDAWEQIFIWIGKDA 318
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 63.1 bits (154), Expect = 2e-11
Identities = 9/79 (11%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 24 EHLSIVNNNLEKL---------FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL 74
+ +++ N + + ++ + + YN +K + L ++ L L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335
Query: 75 DLSHNNIKQIPDALENAKR 93
+ +N ++ A + +
Sbjct: 336 ECLYNQLEGKLPAFGSEIK 354
Score = 62.0 bits (151), Expect = 4e-11
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK 82
L + N LE L +LNL YN+I + IP + E + L +HN +K
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI--TEIPANFCGFTEQVENLSFAHNKLK 390
Query: 83 QIPDALE 89
IP+ +
Sbjct: 391 YIPNIFD 397
Score = 53.1 bits (128), Expect = 4e-08
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 27 SIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF--HLEDLTTLDLSHNNIKQI 84
I N+L+ L +++LR+NK+ + + D L L +DLS+N+ +
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKL--TKLSDDFRATTLPYLVGIDLSYNSFSKF 528
Query: 85 PDALEN 90
P N
Sbjct: 529 PTQPLN 534
Score = 52.0 bits (125), Expect = 8e-08
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNS-----GIPVDLFHLEDLTTLDLSH 78
+ + N+ K + L+ +R + P + LT L +
Sbjct: 516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575
Query: 79 NNIKQIPDAL 88
N+I+++ + +
Sbjct: 576 NDIRKVNEKI 585
Score = 52.0 bits (125), Expect = 8e-08
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 24 EHLSIVNNNLEKL-----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH 78
+ + I NNL+ ++ +L L YN++ G L +L+L++
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLG---MLECLYNQL--EGKLPAFGSEIKLASLNLAY 362
Query: 79 NNIKQIPDAL 88
N I +IP
Sbjct: 363 NQITEIPANF 372
Score = 51.2 bits (123), Expect = 2e-07
Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 24 EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKN------SGIPVDLFHLEDLTTLD 75
E+LS +N L+ + + + + ++ YN+I + + F ++++++
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Query: 76 LSHNNIKQIPDAL 88
LS+N I + P L
Sbjct: 440 LSNNQISKFPKEL 452
Score = 50.4 bits (121), Expect = 3e-07
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 24 EHLSIVNNNLEKLFGE-LTELQCLRTLNLRYNKI------KNSGIPVDLFHLEDLTTLDL 76
+++ NN + K E + L ++NL N + + + LT++DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495
Query: 77 SHNNIKQIPDALENAK 92
N + ++ D
Sbjct: 496 RFNKLTKLSDDFRATT 511
Score = 47.7 bits (114), Expect = 2e-06
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIK-------NSGIPVDLFHLEDLTTLDLSHNNIK 82
NL KL L L ++ +N+ N+ + D E + + + +NN+K
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318
Query: 83 QIP 85
P
Sbjct: 319 TFP 321
Score = 45.4 bits (108), Expect = 1e-05
Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 19/85 (22%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKI------------------KNSGIPVDLF 66
+ ++NN+ + + L LR + + + +
Sbjct: 187 QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246
Query: 67 HLEDLTTLDLSHNN-IKQIPDALEN 90
+L+DLT +++ + + ++P L+
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKA 271
Score = 45.0 bits (107), Expect = 1e-05
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
N L + +T L L + N I + + +++ LD+ N I
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDI--RKVNEKI--TPNISVLDIKDNPNISID 603
Score = 44.6 bits (106), Expect = 2e-05
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH--LEDLTTLDLS 77
L++ N + ++ G +++ L+ +NK+ IP + ++ +D S
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVE---NLSFAHNKL--KYIPNIFDAKSVSVMSAIDFS 410
Query: 78 HNNIKQIPD 86
+N I +
Sbjct: 411 YNEIGSVDG 419
Score = 42.7 bits (101), Expect = 7e-05
Identities = 7/78 (8%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
Query: 13 SKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLT 72
E+ + + L+ L + + + +P L L ++
Sbjct: 219 VAENICEAWENENSE-YAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQ 276
Query: 73 TLDLSHNNIKQIPDALEN 90
++++ N ++
Sbjct: 277 LINVACNRGISGEQLKDD 294
Score = 42.3 bits (100), Expect = 1e-04
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L I +N++ K+ ++ + L+++ N S + + L ++ +
Sbjct: 569 TQLQIGSNDIRKVNEKI--TPNISVLDIKDNPN-ISIDLSYVCPYIEAGMYMLFYDKTQD 625
Query: 84 IPD 86
I
Sbjct: 626 IRG 628
Score = 42.3 bits (100), Expect = 1e-04
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN----SGIPVDLFHLEDLTTLDLSHN 79
E + + +K F + +L + I + I T + N
Sbjct: 136 EQKQKMRMHYQKTF--VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193
Query: 80 NIKQIPDALEN 90
NI + A+
Sbjct: 194 NITFVSKAVMR 204
Score = 40.0 bits (94), Expect = 6e-04
Identities = 6/59 (10%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 24 EHLSIVNNNLEKLFGELTELQC-LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
I ++ +K + + + + N I + + + L L + ++
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPF 218
Score = 38.1 bits (89), Expect = 0.002
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L+L +P + L +L L L + K
Sbjct: 83 VTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEK 118
Score = 37.3 bits (87), Expect = 0.005
Identities = 12/90 (13%), Positives = 21/90 (23%), Gaps = 8/90 (8%)
Query: 9 FCMASKSESVTIGLT---EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSG---I 61
M V++ LS+ + +L L L L + K +
Sbjct: 66 LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125
Query: 62 PVDLFHLEDLTTLDLSHNN-IKQIPDALEN 90
P + + K D
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPR 155
Score = 31.2 bits (71), Expect = 0.35
Identities = 6/67 (8%), Positives = 18/67 (26%), Gaps = 9/67 (13%)
Query: 24 EHLSIVNNNLE-----KLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH 78
E L++ ++ + ++ + + + + DL
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD----YDPREDFSDLIK 163
Query: 79 NNIKQIP 85
+ I P
Sbjct: 164 DCINSDP 170
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 60.7 bits (147), Expect = 1e-10
Identities = 9/63 (14%), Positives = 23/63 (36%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ + + +L + ++ + YN ++ L + L LD HN ++
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587
Query: 84 IPD 86
+
Sbjct: 588 LEA 590
Score = 58.3 bits (141), Expect = 8e-10
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK 82
L V+N + L L L L YN+I IP D + + L SHN +K
Sbjct: 576 GLLDCVHNKVRHL-EAFGTNVKLTDLKLDYNQI--EEIPEDFCAFTDQVEGLGFSHNKLK 632
Query: 83 QIPDALE 89
IP+
Sbjct: 633 YIPNIFN 639
Score = 54.1 bits (130), Expect = 2e-08
Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSG-----IPVDLFHLEDLTTLDLSH 78
++ + N + L+ +R+ + P + L L +
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815
Query: 79 NNIKQIPDAL 88
N+I+++ + L
Sbjct: 816 NDIRKVDEKL 825
Score = 54.1 bits (130), Expect = 2e-08
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 27 SIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFH--LEDLTTLDLSHNNIKQI 84
SI N+L+ G L T++LR+NK+ + + D L L+ +D+S+N
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKL--TSLSDDFRATTLPYLSNMDVSYNCFSSF 768
Query: 85 PDALEN 90
P N
Sbjct: 769 PTQPLN 774
Score = 53.0 bits (127), Expect = 4e-08
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 24 EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKI----KNSGIPVDLFHLEDLTTLDLS 77
E L +N L+ + + + +++ YNKI +N +D + + +T+ LS
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681
Query: 78 HNNIKQIPDAL 88
+N I++ P L
Sbjct: 682 YNEIQKFPTEL 692
Score = 50.6 bits (121), Expect = 2e-07
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKN------SGIPVDLFHLEDLTTLDL 76
+++ N ++K + T+ L N + + + + LTT+DL
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735
Query: 77 SHNNIKQIPDALENAK 92
N + + D
Sbjct: 736 RFNKLTSLSDDFRATT 751
Score = 50.6 bits (121), Expect = 3e-07
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 15 SESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL 74
+++ + + S E + L+ L + L +P L+ L +L +L
Sbjct: 462 YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSL 520
Query: 75 DLSHNNIKQIPDALENAKR 93
+++ N + R
Sbjct: 521 NIACNRGISAAQLKADWTR 539
Score = 48.7 bits (116), Expect = 9e-07
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 19 TIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLS 77
G+ N + + + +T L L + N I + L L LD++
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI--RKVDEKL--TPQLYILDIA 835
Query: 78 HNNIKQIP 85
N I
Sbjct: 836 DNPNISID 843
Score = 48.7 bits (116), Expect = 1e-06
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 39 ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATL 98
+L + L+L K +P + L +L L ++ + + T
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376
Query: 99 DKR 101
++R
Sbjct: 377 EER 379
Score = 47.6 bits (113), Expect = 2e-06
Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 19/85 (22%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKI------------------KNSGIPVDLF 66
+ + N + + + L L+ + + + +
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488
Query: 67 HLEDLTTLDLSHNN-IKQIPDALEN 90
+L+DLT ++L + + Q+PD L +
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYD 513
Score = 47.6 bits (113), Expect = 2e-06
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 24 EHLSIVNNNLEKLFGEL-TELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
L + N +E++ + + L +NK+K + + + ++D S+N I
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657
Query: 83 QIPDAL 88
+
Sbjct: 658 SEGRNI 663
Score = 41.0 bits (96), Expect = 3e-04
Identities = 8/71 (11%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-----SGIPVDLFHLEDLTTLDLSH 78
++ + + + E+ ++ ++L+ +I N + I + L L + ++
Sbjct: 399 NLSDLLQDAINRN-PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457
Query: 79 NNIKQIPDALE 89
+ A++
Sbjct: 458 SPFTYDNIAVD 468
Score = 38.3 bits (89), Expect = 0.002
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L I +N++ K+ +L L L++ N + + ++E L ++ +
Sbjct: 809 IQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIE-AGMYVLLYDKTQD 865
Query: 84 IPD 86
I
Sbjct: 866 IRG 868
Score = 35.2 bits (81), Expect = 0.020
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
LS+ + + +L L+ L+ + SG L + + H
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385
Query: 83 QIPD 86
Sbjct: 386 HYKK 389
Score = 34.5 bits (79), Expect = 0.034
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 24 EHLSIVNNNLEKLFGELTELQC-LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ LS ++ + + R ++I+ + L + + L DL + I
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409
Query: 83 QIPDALENAKRTKATLD 99
+ P+ K ++ +L
Sbjct: 410 RNPEMKPIKKDSRISLK 426
Score = 32.5 bits (74), Expect = 0.15
Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 4/73 (5%)
Query: 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN----SGIPVDLFHLEDLTTLDLS 77
+ L Q L +L + I I D T +
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433
Query: 78 HNNIKQIPDALEN 90
N I I A++
Sbjct: 434 TNRITFISKAIQR 446
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 57.9 bits (141), Expect = 1e-10
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + L +L + EL L Y ++ + + + L D + + +
Sbjct: 99 SKLQEIYQELTELKAAVGELPEKSKLQEIYQEL--TQLKAAVGELPDQSKQQQIYQELTD 156
Query: 84 IPDALEN 90
+ A E
Sbjct: 157 LKTAFER 163
Score = 55.9 bits (136), Expect = 5e-10
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + L +L + EL L Y ++ + + + L + + L + + +
Sbjct: 30 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL--TRLKAAVGELPEKSKLQEIYQELTR 87
Query: 84 IPDALEN 90
+ A+
Sbjct: 88 LKAAVGE 94
Score = 54.8 bits (133), Expect = 1e-09
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + L +L + EL L Y ++ + + + L + + L + + +
Sbjct: 53 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL--TRLKAAVGELPEKSKLQEIYQELTE 110
Query: 84 IPDALEN 90
+ A+
Sbjct: 111 LKAAVGE 117
Score = 53.6 bits (130), Expect = 4e-09
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + L +L + EL L Y ++ + + L + + L + + +
Sbjct: 7 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTR--LKAAVGELPEKSKLQEIYQELTR 64
Query: 84 IPDALEN 90
+ A+
Sbjct: 65 LKAAVGE 71
Score = 47.1 bits (113), Expect = 7e-07
Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 42 ELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90
EL L Y ++ + + + L + + L + + ++ A+
Sbjct: 2 ELPEKSKLQEIYQEL--TRLKAAVGELPEKSKLQEIYQELTRLKAAVGE 48
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 60.2 bits (145), Expect = 2e-10
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIK 82
HL + +N L L L L+CL L N ++N G+ +L L L L +N ++
Sbjct: 466 THLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA----NLPRLQELLLCNNRLQ 521
Query: 83 QIPD 86
Q
Sbjct: 522 QSAA 525
Score = 53.6 bits (128), Expect = 2e-08
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L +N LE + G + L L+ L L N+++ S L L L+L N++ Q
Sbjct: 489 EVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547
Query: 84 IPD 86
Sbjct: 548 EEG 550
Score = 43.6 bits (102), Expect = 4e-05
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
+ + L + E +R L+L + + + L L +T LDLSHN +
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRL 475
Query: 82 KQIPDALENAKR 93
+ +P AL +
Sbjct: 476 RALPPALAALRC 487
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding
protein, familial amyloi finnish type, cadmium binding,
metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Length = 104
Score = 54.8 bits (132), Expect = 4e-10
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNT 217
RL++V + VPV ES + F+LD G + W G +
Sbjct: 3 QRLFQVKG------RRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRY 51
Score = 27.0 bits (60), Expect = 2.8
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 95 KATLDKRACSAIHAVNLR-NFLAAECRTIREEQGDESEEFLSLF 137
+ +R + + +R N + R E+G E E L +
Sbjct: 47 NSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQVL 90
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 58.1 bits (141), Expect = 6e-10
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L I NN L L + L+ L+L +N + + + + + L L L HN+I
Sbjct: 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT 332
Query: 84 IP 85
+
Sbjct: 333 LK 334
Score = 53.5 bits (129), Expect = 2e-08
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ + N LEK+ + ++Q L L + N++ + + + L LDLSHN++
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL 308
Query: 83 QIPDALENAKR 93
+ R
Sbjct: 309 HVERNQPQFDR 319
Score = 51.2 bits (123), Expect = 1e-07
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
+ L + N + L + L L L N + + +P +F + LTTL +S+NN+
Sbjct: 96 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNL 153
Query: 82 KQIPD 86
++I D
Sbjct: 154 ERIED 158
Score = 49.7 bits (119), Expect = 3e-07
Identities = 13/83 (15%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 5 EPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVD 64
+P C+ S + + H+ + ++ F ++T L + + + + ++ +P
Sbjct: 7 QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRK--LPAA 63
Query: 65 LFH-LEDLTTLDLSHNNIKQIPD 86
L + L+L+ I++I
Sbjct: 64 LLDSFRQVELLNLNDLQIEEIDT 86
Score = 49.3 bits (118), Expect = 5e-07
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
E L++ + +E++ F +Q L + +N I+ +P +F ++ LT L L
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQ---KLYMGFNAIRY--LPPHVFQNVPLLTVLVLER 126
Query: 79 NNIKQIPDAL 88
N++ +P +
Sbjct: 127 NDLSSLPRGI 136
Score = 48.9 bits (117), Expect = 6e-07
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
L + N+L L F +L TL++ N ++ I D F L L LS
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLT---TLSMSNNNLER--IEDDTFQATTSLQNLQLSS 174
Query: 79 NNIKQIPDAL 88
N + + +L
Sbjct: 175 NRLTHVDLSL 184
Score = 45.8 bits (109), Expect = 6e-06
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L +N++ + G + L L L++N + ++ L + L +DLS+N +++
Sbjct: 208 EELDASHNSINVVRGPV--NVELTILKLQHNNLTDTA---WLLNYPGLVEVDLSYNELEK 262
Query: 84 IPD 86
I
Sbjct: 263 IMY 265
Score = 44.6 bits (106), Expect = 2e-05
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
+ L + +N+L + + L L L +N I + + H L L LSHN+
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT--LKLSTHH--TLKNLTLSHNDW 351
Score = 43.5 bits (103), Expect = 4e-05
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
++L + +N L + +L+ + L N+ YN + L + LD SHN+I
Sbjct: 168 QNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINV 219
Query: 84 IPDAL 88
+ +
Sbjct: 220 VRGPV 224
Score = 30.0 bits (68), Expect = 0.73
Identities = 4/41 (9%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 49 LNLRYNKI-KNSGIPVDLFHLEDLTTLDLSHNNIKQIPDAL 88
++ + ++ + L + + ++ ++++P AL
Sbjct: 24 YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 57.7 bits (140), Expect = 7e-10
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
+ L + N + K+ L + + L N +K+SGI F ++ L+ + ++ NI
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183
Query: 82 KQIPDAL 88
IP L
Sbjct: 184 TTIPQGL 190
Score = 53.1 bits (128), Expect = 2e-08
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L + N + K+ L L L L L +N I S + + L L L++N +
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI--SAVDNGSLANTPHLRELHLNNNKL 252
Query: 82 KQIPDALEN 90
++P L +
Sbjct: 253 VKVPGGLAD 261
Score = 51.9 bits (125), Expect = 6e-08
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
T L + NN + ++ G+ L+ L TL L NKI S I F L L L LS N
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQ 111
Query: 81 IKQIPDAL 88
+K++P+ +
Sbjct: 112 LKELPEKM 119
Score = 48.8 bits (117), Expect = 6e-07
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
L + N++ + G L LR L+L NK+ +P L + + + L +NNI
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNIS 276
Query: 83 QIPD 86
I
Sbjct: 277 AIGS 280
Score = 46.5 bits (111), Expect = 4e-06
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-------HLEDLTTLDL 76
L + NN L K+ G L + + ++ + L N I I + F + + L
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKASYSGVSL 300
Query: 77 SHNNIK 82
N ++
Sbjct: 301 FSNPVQ 306
Score = 43.5 bits (103), Expect = 3e-05
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 24 EHLSIVNNNLEKL-------FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLD 75
+ + + NNN+ + G T+ ++L N ++ I F + +
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325
Query: 76 LSHN 79
L +
Sbjct: 326 LGNY 329
Score = 33.4 bits (77), Expect = 0.064
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA 87
LR + ++ +P DL D LDL +N I +I D
Sbjct: 33 LRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDG 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 57.6 bits (140), Expect = 8e-10
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + + L + + L L+ + + + +P + L TL L+ N ++
Sbjct: 84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRA 141
Query: 84 IPDALENAKRTKATLDKRACSAI 106
+P ++ + R + L RAC +
Sbjct: 142 LPASIASLNRLR-ELSIRACPEL 163
Score = 53.4 bits (129), Expect = 2e-08
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 20 IGLTEHLSIVNNNLEKLFGELTELQ--CLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLS 77
+ + L+ L + L LR + P F L L + +
Sbjct: 55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTID 112
Query: 78 HNNIKQIPDALEN 90
+ ++PD ++
Sbjct: 113 AAGLMELPDTMQQ 125
Score = 53.0 bits (128), Expect = 2e-08
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN-IK 82
+ L + + L + LQ L++L +R + + + + HL L LDL ++
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALR 243
Query: 83 QIPDALEN 90
P
Sbjct: 244 NYPPIFGG 251
Score = 51.9 bits (125), Expect = 7e-08
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNK--------IKNSGIPVDLFHLEDLTTLD 75
E L++ N L L + L LR L++R + ++ + L +L +L
Sbjct: 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189
Query: 76 LSHNNIKQIPDALENAKR 93
L I+ +P ++ N +
Sbjct: 190 LEWTGIRSLPASIANLQN 207
Score = 45.7 bits (109), Expect = 7e-06
Identities = 7/69 (10%), Positives = 16/69 (23%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ + N + +K + ++ L+L + Q
Sbjct: 36 QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ 95
Query: 84 IPDALENAK 92
PD
Sbjct: 96 FPDQAFRLS 104
Score = 42.2 bits (100), Expect = 9e-05
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDAL 88
+NL L ++ L L L+LR S +P + L + + + Q+
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCV-NLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 58.0 bits (140), Expect = 9e-10
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L I NN L L + L+ L+L +N + + + + + L L L HN+I
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT 338
Query: 84 IP-DALEN 90
+
Sbjct: 339 LKLSTHHT 346
Score = 53.4 bits (128), Expect = 3e-08
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ + N LEK+ + ++Q L L + N++ + + + L LDLSHN++
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL 314
Query: 83 QIPDALEN 90
+
Sbjct: 315 HVERNQPQ 322
Score = 50.7 bits (121), Expect = 2e-07
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
+ L + N + L + L L L N + + +P +F + LTTL +S+NN+
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNL 159
Query: 82 KQIPD 86
++I D
Sbjct: 160 ERIED 164
Score = 49.2 bits (117), Expect = 6e-07
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
E L++ + +E++ F +Q L + +N I+ +P +F ++ LT L L
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQ---KLYMGFNAIRY--LPPHVFQNVPLLTVLVLER 132
Query: 79 NNIKQIPDAL 88
N++ +P +
Sbjct: 133 NDLSSLPRGI 142
Score = 49.2 bits (117), Expect = 6e-07
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L + N+L L G L TL++ N ++ I D F L L LS N +
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRL 183
Query: 82 KQIPDAL 88
+ +L
Sbjct: 184 THVDLSL 190
Score = 49.2 bits (117), Expect = 7e-07
Identities = 13/83 (15%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 5 EPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVD 64
+P C+ S + + H+ + ++ F ++T L + + + + ++ +P
Sbjct: 13 QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRK--LPAA 69
Query: 65 LFH-LEDLTTLDLSHNNIKQIPD 86
L + L+L+ I++I
Sbjct: 70 LLDSFRQVELLNLNDLQIEEIDT 92
Score = 46.5 bits (110), Expect = 5e-06
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L +N++ + G + L L L++N + ++ L + L +DLS+N +++
Sbjct: 214 EELDASHNSINVVRGPV--NVELTILKLQHNNLTDTA---WLLNYPGLVEVDLSYNELEK 268
Query: 84 IPD 86
I
Sbjct: 269 IMY 271
Score = 44.1 bits (104), Expect = 3e-05
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
+ L + +N+L + + L L L +N I + + H L L LSHN+
Sbjct: 304 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT--LKLSTHH--TLKNLTLSHNDW 357
Score = 43.0 bits (101), Expect = 6e-05
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
++L + +N L + +L+ + L N+ YN + L + LD SHN+I
Sbjct: 174 QNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINV 225
Query: 84 IPDAL 88
+ +
Sbjct: 226 VRGPV 230
Score = 30.7 bits (69), Expect = 0.49
Identities = 7/65 (10%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF------HLEDLTTLDLSHNNIKQ 83
N++ E + + + + D++ L + + ++ +++
Sbjct: 6 RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65
Query: 84 IPDAL 88
+P AL
Sbjct: 66 LPAAL 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4,
TOLL-like receptor, MD-2, LPS, leucine-rich repeat,
glycoprotein, immune response; HET: NAG BMA FUL; 1.90A
{Eptatretus burgeri}
Length = 306
Score = 55.8 bits (135), Expect = 3e-09
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
L + +N L+ L G +L L L+L N + G L LDLS N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 81 IKQIPDALEN 90
+ +
Sbjct: 90 VITMSSNFLG 99
Score = 50.4 bits (121), Expect = 2e-07
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 21 GLT--EHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLD 75
GL+ E L + N+ ++ F TEL+ L L+L +++ + F+ L L L+
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLN 205
Query: 76 LSHNNIKQIPD-ALENAKR 93
+SHNN + +
Sbjct: 206 MSHNNFFSLDTFPYKCLNS 224
Score = 50.0 bits (120), Expect = 2e-07
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L + LE+L L L+ LN+ +N + + L L LD S N+I
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHI 235
Query: 82 KQIP-DALENAKRTKATLD 99
L++ + A L+
Sbjct: 236 MTSKKQELQHFPSSLAFLN 254
Score = 50.0 bits (120), Expect = 2e-07
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+L I + + F G L L L + N + + +P L +LT LDLS ++
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 83 QIPD 86
Q+
Sbjct: 189 QLSP 192
Score = 47.7 bits (114), Expect = 1e-06
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 24 EHLSIVNNNLEKLF---GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
LS+ +N L L+ L+L +N + + + LE L LD H+N
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSN 112
Query: 81 IKQIPD 86
+KQ+ +
Sbjct: 113 LKQMSE 118
Score = 46.9 bits (112), Expect = 2e-06
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 24 EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
EHL ++NL+++ F L+ L L++ + + +F L L L ++ N+
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNS 161
Query: 81 IKQ--IPDALEN 90
++ +PD
Sbjct: 162 FQENFLPDIFTE 173
Score = 40.0 bits (94), Expect = 4e-04
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH--LEDLTTLDLSHNN 80
+ L++ +NN L L L+ L+ N I L L+L+ N+
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT--SKKQELQHFPSSLAFLNLTQND 259
Query: 81 I 81
Sbjct: 260 F 260
Score = 29.6 bits (67), Expect = 1.0
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 61 IPVDLFHLEDLTTLDLSHNNIKQIPD 86
+P + T L+L N ++ +P
Sbjct: 22 VPTGIP--SSATRLELESNKLQSLPH 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 56.2 bits (136), Expect = 3e-09
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
E+L V L L + +L L+ LN+ +N I + +P +L +L +DLS+N I+
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Query: 83 QIPDA----LENAKRTKATLD 99
I L + +LD
Sbjct: 167 TITVNDLQFLRENPQVNLSLD 187
Score = 52.3 bits (126), Expect = 6e-08
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L + LE++ G L L+ LN+ +N + + + L L+TLD S N I
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL--LFLDSSHYNQLYSLSTLDCSFNRI 533
Query: 82 KQIPDAL 88
+ L
Sbjct: 534 ETSKGIL 540
Score = 51.6 bits (124), Expect = 1e-07
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLS 77
T+++ + N L+ L F +ELQ L+L +I I +H L L+ L L+
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQ---WLDLSRCEI--ETIEDKAWHGLHHLSNLILT 88
Query: 78 HNNIKQIPD 86
N I+
Sbjct: 89 GNPIQSFSP 97
Score = 50.4 bits (121), Expect = 3e-07
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
HL + N + L+ L+ L+ +++ +K LE L LD+S+ N K
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 84 IPD 86
D
Sbjct: 439 DFD 441
Score = 49.6 bits (119), Expect = 5e-07
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+L I N + F G L L TL + N K++ + + +LT LDLS ++
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486
Query: 83 QIP 85
QI
Sbjct: 487 QIS 489
Score = 47.3 bits (113), Expect = 3e-06
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
+L + N L + +L LR L+L +N + + LE+L LD H+
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNS-LRHLDLSFNGA--IIMSANFMGLEELQHLDFQHS 409
Query: 80 NIKQIPD 86
+K++ +
Sbjct: 410 TLKRVTE 416
Score = 46.9 bits (112), Expect = 3e-06
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ LSI+ L++ +L L++L L NK I L L+ LDLS N +
Sbjct: 310 QSLSIIRCQLKQF--PTLDLPFLKSLTLTMNKGS---ISFKKVALPSLSYLDLSRNALSF 364
Query: 84 IPD 86
Sbjct: 365 SGC 367
Score = 46.2 bits (110), Expect = 5e-06
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFH---LEDLTTLDLSHNN 80
+ L++ N F + L L L+L N + S + L LDLS N
Sbjct: 331 KSLTLTMNKGSISF-KKVALPSLSYLDLSRNAL--SFSGCCSYSDLGTNSLRHLDLSFNG 387
Query: 81 IKQIPDALEN 90
+
Sbjct: 388 AIIMSANFMG 397
Score = 44.6 bits (106), Expect = 2e-05
Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 30 NNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDA 87
NLE + L + R + + F L +++ + L+ +IK + D
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303
Query: 88 LENAKRTKATLDKRACSAIHAVNLRN 113
++ K ++ + ++L
Sbjct: 304 PKHFKWQSLSIIRCQLKQFPTLDLPF 329
Score = 43.9 bits (104), Expect = 3e-05
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED-LTTLDLSHNNI 81
+ L++ +NNL L +L L TL+ +N+I L H L +L++N++
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI--ETSKGILQHFPKSLAFFNLTNNSV 557
Query: 82 KQIPDAL 88
I +
Sbjct: 558 ACICEHQ 564
Score = 42.7 bits (101), Expect = 7e-05
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQ 83
++ L K+ ++ + ++L +N + + F + +L LDLS I+
Sbjct: 15 TYQCMDQKLSKVPDDIPSS--TKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIET 70
Query: 84 IPD 86
I D
Sbjct: 71 IED 73
Score = 41.6 bits (98), Expect = 2e-04
Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+S+ +++ L ++ + ++L++ ++K L L +L L+ N
Sbjct: 288 SAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQ----FPTLDLPFLKSLTLTMNKGSI 342
Query: 84 IPD 86
Sbjct: 343 SFK 345
Score = 37.3 bits (87), Expect = 0.004
Identities = 12/65 (18%), Positives = 24/65 (36%)
Query: 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
+ L + N ++ + + + L L LR N ++ + L +L L L
Sbjct: 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241
Query: 82 KQIPD 86
K +
Sbjct: 242 KDERN 246
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 55.8 bits (135), Expect = 4e-09
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNI 81
+ + N +L + L+ L LR +KN F L +LT LDLS+NNI
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492
Query: 82 KQIPDAL 88
I D +
Sbjct: 493 ANINDDM 499
Score = 51.5 bits (124), Expect = 1e-07
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
L++ +N L +L F ++L +L++ +N I S + +L L L L+L
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLT---SLDVGFNTI--SKLEPELCQKLPMLKVLNLQ 81
Query: 78 HNNIKQIPDAL 88
HN + Q+ D
Sbjct: 82 HNELSQLSDKT 92
Score = 50.8 bits (122), Expect = 2e-07
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L +++N+++K+ + + L TL+L +N + S + LE+L L LS+N I
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL--SSTKLGTQVQLENLQELLLSNNKI 157
Query: 82 KQIPD 86
+ +
Sbjct: 158 QALKS 162
Score = 50.4 bits (121), Expect = 2e-07
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L++ +N +++ +L L+ ++L N + + +P +F + L +L+L N I
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL--NTLPASVFNNQVSLKSLNLQKNLI 596
Query: 82 KQIP 85
+
Sbjct: 597 TSVE 600
Score = 49.6 bits (119), Expect = 5e-07
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
+ L++ +N L +L L L+L N I I + F ++L TLDLSHN +
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI--QKIKNNPFVKQKNLITLDLSHNGL 133
Query: 82 KQIPD 86
Sbjct: 134 SSTKL 138
Score = 48.1 bits (115), Expect = 1e-06
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF---HLEDLTTLDLSHN 79
L + +N L G +L+ L+ L L NKI + + L L+LS N
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI--QALKSEELDIFANSSLKKLELSSN 181
Query: 80 NIKQI-PDALEN 90
IK+ P
Sbjct: 182 QIKEFSPGCFHA 193
Score = 46.5 bits (111), Expect = 4e-06
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
+LS+ N+ L F L L L+L YN + + + D F L L L +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTN-LTMLDLSYNNL--NVVGNDSFAWLPQLEYFFLEY 281
Query: 79 NNIKQI-PDALENAKR 93
NNI+ + +L
Sbjct: 282 NNIQHLFSHSLHGLFN 297
Score = 46.5 bits (111), Expect = 5e-06
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFH---LEDLTTLDLSHN 79
EHL++ +N++ + T L L+ L+L + + + F L L+L+ N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391
Query: 80 NIKQIPD 86
I +I
Sbjct: 392 KISKIES 398
Score = 46.1 bits (110), Expect = 7e-06
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIK------NSGIPVDLF-HLEDLTTLD 75
L + NNN+ + L L+ L L+L++N + N G P+ L L L+
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 76 LSHNNIKQIP 85
L N +IP
Sbjct: 543 LESNGFDEIP 552
Score = 45.4 bits (108), Expect = 1e-05
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
L++ N + K+ F L L+ L +L N+I + + LE++ + LS+
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVL---DLGLNEIGQE-LTGQEWRGLENIFEIYLSY 439
Query: 79 NNIKQIPD 86
N Q+
Sbjct: 440 NKYLQLTR 447
Score = 43.5 bits (103), Expect = 4e-05
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQC--LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
+ L + NN ++ L EL L+ L L N+IK P + L L L++
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQ 206
Query: 81 I 81
+
Sbjct: 207 L 207
Score = 43.1 bits (102), Expect = 6e-05
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSG--------IPVDLFHLEDLTTL 74
E+ + NN++ LF L L +R LNL+ + K S L+ L L
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334
Query: 75 DLSHNNIKQIPD 86
++ N+I I
Sbjct: 335 NMEDNDIPGIKS 346
Score = 42.3 bits (100), Expect = 1e-04
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF---HLEDLTTLDLSHN 79
+ L + +N +++ G + L L L ++ S + L + L LS++
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS-LTEKLCLELANTSIRNLSLSNS 232
Query: 80 NIKQIPD 86
+ +
Sbjct: 233 QLSTTSN 239
Score = 41.9 bits (99), Expect = 1e-04
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI-PDAL 88
+ L ++ +L + LNL +N+++ + LT+LD+ N I ++ P+
Sbjct: 13 HLKLTQVPDDL--PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELC 69
Query: 89 EN 90
+
Sbjct: 70 QK 71
Score = 41.1 bits (97), Expect = 2e-04
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH--LEDLTTLDLSHNN 80
+ + + NNL L L++LNL+ N I + + +F +LT LD+ N
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI--TSVEKKVFGPAFRNLTELDMRFNP 620
Query: 81 IKQIPDALE 89
+++
Sbjct: 621 FDCTCESIA 629
Score = 29.6 bits (67), Expect = 1.3
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 71 LTTLDLSHNNIKQIPDAL 88
D SH + Q+PD L
Sbjct: 6 HEVADCSHLKLTQVPDDL 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 54.6 bits (132), Expect = 7e-09
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
L I +N + K+ G + L+ + + + N ++NSG F L L +S +
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185
Query: 83 QIPDAL 88
IP L
Sbjct: 186 GIPKDL 191
Score = 53.9 bits (130), Expect = 1e-08
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L + +N ++ + +L L L L +N+I+ I L L L L +N +
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKL 253
Query: 82 KQIPDALEN 90
++P L +
Sbjct: 254 SRVPAGLPD 262
Score = 51.6 bits (124), Expect = 9e-08
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
T L + NN++ +L + LQ L L L NKI S I F L L L +S N+
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNH 113
Query: 81 IKQIPDAL 88
+ +IP L
Sbjct: 114 LVEIPPNL 121
Score = 51.2 bits (123), Expect = 1e-07
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
L + +N + + G L+ L LR L+L NK+ +P L L+ L + L NNI
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNIT 277
Query: 83 QIPD 86
++
Sbjct: 278 KVGV 281
Score = 47.7 bits (114), Expect = 1e-06
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 16/87 (18%)
Query: 2 VGFEPGTFCMASKSESVTIGLT-EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSG 60
GFEPG F GL +L I L + +L + L L+L +NKI+
Sbjct: 162 SGFEPGAFD----------GLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQA-- 207
Query: 61 IPVDLF-HLEDLTTLDLSHNNIKQIPD 86
I ++ L L L HN I+ I +
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIRMIEN 234
Score = 45.0 bits (107), Expect = 9e-06
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
L +VNN + K+ + L+ L+ L + N + IP +L L L + N I+
Sbjct: 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPPNLP--SSLVELRIHDNRIR 136
Query: 83 QIPDAL 88
++P +
Sbjct: 137 KVPKGV 142
Score = 43.1 bits (102), Expect = 4e-05
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-------HLEDLTTLDL 76
L + NN L ++ L +L+ L+ + L N I + V+ F + L
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK--VGVNDFCPVGFGVKRAYYNGISL 301
Query: 77 SHNNIK 82
+N +
Sbjct: 302 FNNPVP 307
Score = 39.6 bits (93), Expect = 5e-04
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 24 EHLSIVNNNLEKL-------FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLD 75
+ + + NN+ K+ G + ++L N + + F + D +
Sbjct: 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326
Query: 76 LSHN 79
+
Sbjct: 327 FGNY 330
Score = 33.1 bits (76), Expect = 0.085
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA 87
LR + +K +P ++ D T LDL +N+I ++
Sbjct: 35 LRVVQCSDLGLKA--VPKEIS--PDTTLLDLQNNDISELRKD 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 54.3 bits (131), Expect = 1e-08
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L I N + + +R LNL I+ + + L LD+S+NN+
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV--VKTCIPQ--TLEVLDVSNNNLDS 445
Query: 84 IPDALEN 90
L
Sbjct: 446 FSLFLPR 452
Score = 52.8 bits (127), Expect = 4e-08
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSH 78
E L + N + + L+TL L N +++ ++ L++LT+LD+S
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396
Query: 79 NNIKQIPDALEN 90
N +PD+ +
Sbjct: 397 NTFHPMPDSCQW 408
Score = 52.4 bits (126), Expect = 5e-08
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
+ L + N + + G+L L+ L L+ ++I + I D F L L LDLS N+
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNH 85
Query: 81 IKQIPDAL 88
+ + +
Sbjct: 86 LSSLSSSW 93
Score = 48.2 bits (115), Expect = 1e-06
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
+ L + ++ + + F L L+ L+L N + + + F L L L+L
Sbjct: 53 QVLILKSSRINTIEGDAFYSLGSLE---HLDLSDNHLSS--LSSSWFGPLSSLKYLNLMG 107
Query: 79 NNIKQIPDA 87
N + +
Sbjct: 108 NPYQTLGVT 116
Score = 47.0 bits (112), Expect = 3e-06
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF--HLEDLTTLDLSHNN 80
+ +++ N+ + + L+ L L+L N + + L TL LS N+
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372
Query: 81 IKQIPD 86
++ +
Sbjct: 373 LRSMQK 378
Score = 46.6 bits (111), Expect = 4e-06
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L + NNNL+ L LQ L + NK+K +P L + +S N +K
Sbjct: 434 EVLDVSNNNLDSFSLFLPRLQ---ELYISRNKLKT--LPDASL-FPVLLVMKISRNQLKS 487
Query: 84 IPD 86
+PD
Sbjct: 488 VPD 490
Score = 46.3 bits (110), Expect = 5e-06
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L I L + L+ ++ + + +K+ +P HL+ L LDLS N +
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL--VPCSFSQHLKSLEFLDLSENLM 346
Query: 82 KQIP 85
+
Sbjct: 347 VEEY 350
Score = 44.3 bits (105), Expect = 2e-05
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 24 EHLSIVNNNLEKLFGE-LTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN-I 81
EHL + +N+L L L L+ LNL N + G+ +L +L TL + +
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136
Query: 82 KQIPD 86
+I
Sbjct: 137 SEIRR 141
Score = 42.4 bits (100), Expect = 9e-05
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 24 EHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
+ L I N + L L L ++ ++N + D+ L L +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--YQSQSLKSIRDIHHLTLHLSE 183
Query: 81 IKQIPDALEN 90
+ + +
Sbjct: 184 SAFLLEIFAD 193
Score = 42.4 bits (100), Expect = 9e-05
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPD 86
+ + + LT +++L+L +NKI I +L L L + I I
Sbjct: 14 SRSFTSIPSGLTAA--MKSLDLSFNKITY--IGHGDLRACANLQVLILKSSRINTIEG 67
Score = 42.4 bits (100), Expect = 9e-05
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 24 EHLSIVNNNLEKL--FGELTELQCLRTLNL-RYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
++L+++ N + L L L+TL + S I F L L L++
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF--SEIRRIDFAGLTSLNELEIKAL 158
Query: 80 NIKQIPD 86
+++
Sbjct: 159 SLRNYQS 165
Score = 42.4 bits (100), Expect = 1e-04
Identities = 9/64 (14%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 26 LSIVNNNLEKLFGELTELQC--LRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK 82
L N + + EL +++ +R L++ + ++ LE + + + ++ +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--FYDLSTVYSLLEKVKRITVENSKVF 323
Query: 83 QIPD 86
+P
Sbjct: 324 LVPC 327
Score = 42.0 bits (99), Expect = 1e-04
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L I +L L ++ + L L ++ + L + L+L N+
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF--LLEIFADILSSVRYLELRDTNL 208
Query: 82 KQIP 85
+
Sbjct: 209 ARFQ 212
Score = 40.5 bits (95), Expect = 4e-04
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 16 ESVTIGLT--EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLT 72
+S ++ L + L I N L+ L + + L + + N++K+ +P +F L L
Sbjct: 444 DSFSLFLPRLQELYISRNKLKTL-PDASLFPVLLVMKISRNQLKS--VPDGIFDRLTSLQ 500
Query: 73 TLDLSHNNI 81
+ L N
Sbjct: 501 KIWLHTNPW 509
Score = 36.2 bits (84), Expect = 0.009
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 45 CLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA 87
+ R + IP L + +LDLS N I I
Sbjct: 6 ASGVCDGRSRSF--TSIPSGLT--AAMKSLDLSFNKITYIGHG 44
Score = 30.1 bits (68), Expect = 0.74
Identities = 8/78 (10%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKN------SGIPVDLFHLEDLTT 73
+L + + NL + ++ L R + + + + + L ++
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258
Query: 74 LDLSHNNIKQIPDALENA 91
D + N + + +
Sbjct: 259 DDCTLNGLGDFNPSESDV 276
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 53.7 bits (129), Expect = 2e-08
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 23 TEHLSIVNNNLEKLFGE--LTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
T L + +NNL +L E T L L +L L +N + I + F + +L LDLS N
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF--ISSEAFVPVPNLRYLDLSSN 98
Query: 80 NIKQIPD 86
++ + +
Sbjct: 99 HLHTLDE 105
Score = 50.6 bits (121), Expect = 2e-07
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 15/76 (19%)
Query: 21 GLT--EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF----HLED 70
L E L + NN++ + F ++ +LQ L L N+I PV+L L
Sbjct: 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQ---KLYLSQNQISR--FPVELIKDGNKLPK 164
Query: 71 LTTLDLSHNNIKQIPD 86
L LDLS N +K++P
Sbjct: 165 LMLLDLSSNKLKKLPL 180
Score = 49.1 bits (117), Expect = 6e-07
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
+L + +N+L L ++LQ L L L N I + + F + L L LS N I
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV--VDRNAFEDMAQLQKLYLSQNQI 148
Query: 82 KQIPD 86
+ P
Sbjct: 149 SRFPV 153
Score = 27.5 bits (61), Expect = 4.9
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 59 SGIPVDLFHLEDLTTLDLSHNNIKQIP 85
+P LDLSHNN+ ++
Sbjct: 35 QSLPSYT------ALLDLSHNNLSRLR 55
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 53.9 bits (130), Expect = 2e-08
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 24 EHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
E L + N+ ++ F TEL+ L L+L ++ + F+ L L L++SHNN
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMSHNN 505
Query: 81 IKQ-IPDALENAKR 93
+
Sbjct: 506 FFSLDTFPYKCLNS 519
Score = 52.0 bits (125), Expect = 7e-08
Identities = 12/63 (19%), Positives = 28/63 (44%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
++L + N + + L+ L L+ +++ +K L +L LD+SH + +
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 84 IPD 86
+
Sbjct: 436 AFN 438
Score = 52.0 bits (125), Expect = 8e-08
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L V NL L + L+ L+ LN+ +N I++ +P +L +L LDLS N I+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 83 QI-PDALEN 90
I L
Sbjct: 163 SIYCTDLRV 171
Score = 51.2 bits (123), Expect = 1e-07
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L + LE+L L L+ LN+ +N + + L L LD S N+I
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHI 530
Query: 82 K-QIPDALENAKRTKATLD 99
L++ + A L+
Sbjct: 531 MTSKKQELQHFPSSLAFLN 549
Score = 50.8 bits (122), Expect = 2e-07
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+L I + + F G L L L + N + + +P L +LT LDLS ++
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 83 QIP 85
Q+
Sbjct: 484 QLS 486
Score = 49.6 bits (119), Expect = 5e-07
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNIKQ 83
L+ +N F E+ +L L L+L N + G F L LDLS N +
Sbjct: 329 RLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387
Query: 84 IPDALEN 90
+
Sbjct: 388 MSSNFLG 394
Score = 49.3 bits (118), Expect = 6e-07
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
T++L + N L L F ELQ L+L +I I + L L+TL L+
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQ---VLDLSRCEI--QTIEDGAYQSLSHLSTLILT 84
Query: 78 HNNIKQI-PDALEN 90
N I+ + A
Sbjct: 85 GNPIQSLALGAFSG 98
Score = 42.7 bits (101), Expect = 8e-05
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 24 EHLSIVNNNLE--KLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLT----TLDLS 77
+ L++ +N ++ KL + L L L+L NKI++ DL L + +LDLS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLS 185
Query: 78 HNNIKQIPD 86
N + I
Sbjct: 186 LNPMNFIQP 194
Score = 42.3 bits (100), Expect = 1e-04
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
+L +++ LF LT + +L I + D + L+L + Q
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSF---SLVSVTI--ERVK-DFSYNFGWQHLELVNCKFGQF 319
Query: 85 PD 86
P
Sbjct: 320 PT 321
Score = 41.9 bits (99), Expect = 1e-04
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLED-LTTLDLSHNNI 81
+ L++ +NN L L L+ L+ N I S +L H L L+L+ N+
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQNDF 555
Score = 40.4 bits (95), Expect = 4e-04
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 6 PGTFCMASKSESVTIGLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNS-GIPV 63
+ E + L E + NLEK L L L R + +
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRN--EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275
Query: 64 DLFH-LEDLTTLDLSHNNIKQIPD 86
DLF+ L ++++ L I+++ D
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKD 299
Score = 36.9 bits (86), Expect = 0.006
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK- 82
+HL +VN + L+ L+ L NK N L L LDLS N +
Sbjct: 307 QHLELVNCKFGQFPTLK--LKSLKRLTFTSNKGGN---AFSEVDLPSLEFLDLSRNGLSF 361
Query: 83 --QIPDALEN 90
+
Sbjct: 362 KGCCSQSDFG 371
Score = 33.1 bits (76), Expect = 0.10
Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Query: 3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIP 62
+ + + + L LS N + + + L L LR N + +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSL--DLS--LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 63 VDLFHLEDLTTLDLSHNNIK 82
+ L L L +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFR 238
Score = 33.1 bits (76), Expect = 0.11
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNL--EKLFGELTELQCLRTLNLRYNKIKNSG--IPVDLFHLEDLTTLDLSHN 79
L++ NN + + L L L + +N G D LE L L +
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 80 NIKQI 84
+ +
Sbjct: 263 RLAYL 267
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB:
2v9s_A
Length = 220
Score = 52.3 bits (126), Expect = 2e-08
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 10 CMASKSESVTIGL---TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL 65
C + L + + N ++ + G + + LR ++L N+I + D
Sbjct: 18 CRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--LAPDA 75
Query: 66 F-HLEDLTTLDLSHNNIKQIP 85
F L L +L L N I ++P
Sbjct: 76 FQGLRSLNSLVLYGNKITELP 96
Score = 48.1 bits (115), Expect = 6e-07
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 21 GLTE--HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTT 73
+ + + NN + +L F L L +L L NKI +P LF L L
Sbjct: 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLN---SLVLYGNKITE--LPKSLFEGLFSLQL 108
Query: 74 LDLSHNNIKQIPD 86
L L+ N I +
Sbjct: 109 LLLNANKINCLRV 121
Score = 47.3 bits (113), Expect = 1e-06
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 21 GLTE--HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
GL L + N + +L F L LQ L L NKI + VD F L +L
Sbjct: 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQ---LLLLNANKINC--LRVDAFQDLHNLNL 132
Query: 74 LDLSHNNIKQIPD 86
L L N ++ I
Sbjct: 133 LSLYDNKLQTIAK 145
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 53.5 bits (129), Expect = 2e-08
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 16/82 (19%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN---------------SGIPVDLFHL 68
E L N+L +L L+ L N + + +P +L +
Sbjct: 94 ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNS 152
Query: 69 EDLTTLDLSHNNIKQIPDALEN 90
L +D+ +N++K++PD +
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPPS 174
Score = 52.3 bits (126), Expect = 5e-08
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ + + NN+L+KL L+ + N+++ +P +L +L LT + +N++K+
Sbjct: 156 KIIDVDNNSLKKLPDLPPSLE---FIAAGNNQLEE--LP-ELQNLPFLTAIYADNNSLKK 209
Query: 84 IPDALEN 90
+PD +
Sbjct: 210 LPDLPLS 216
Score = 51.5 bits (124), Expect = 1e-07
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ NN+L+KL L+ ++ N ++ +L +L LTT+ +N +K
Sbjct: 198 TAIYADNNSLKKLPDLPLSLE---SIVAGNNILE---ELPELQNLPFLTTIYADNNLLKT 251
Query: 84 IPDALEN 90
+PD +
Sbjct: 252 LPDLPPS 258
Score = 46.5 bits (111), Expect = 4e-06
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+L+ +N + L L+ LN+ NK+ +P L L S N++ +
Sbjct: 300 YYLNASSNEIRSLCDLPPSLE---ELNVSNNKLIE--LPA---LPPRLERLIASFNHLAE 351
Query: 84 IPDALEN 90
+P+ +N
Sbjct: 352 VPELPQN 358
Score = 45.4 bits (108), Expect = 1e-05
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E + NN LE+L EL L L T+ N +K +P L L++ N +
Sbjct: 218 ESIVAGNNILEEL-PELQNLPFLTTIYADNNLLKT--LP---DLPPSLEALNVRDNYLTD 271
Query: 84 IPDALEN 90
+P+ ++
Sbjct: 272 LPELPQS 278
Score = 44.6 bits (106), Expect = 2e-05
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 21/83 (25%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED------------- 70
E L N+L ++ Q L+ L++ YN ++ P +ED
Sbjct: 340 ERLIASFNHLAEV---PELPQNLKQLHVEYNPLRE--FPDIPESVEDLRMNSHLAEVPEL 394
Query: 71 ---LTTLDLSHNNIKQIPDALEN 90
L L + N +++ PD E+
Sbjct: 395 PQNLKQLHVETNPLREFPDIPES 417
Score = 44.2 bits (105), Expect = 2e-05
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 19/81 (23%)
Query: 24 EHLSIVNNNLEKL----FGELTELQC----------LRTLNLRYNKIKNSGIPVDLFHLE 69
+ E+ GE E+ L L + + +P HLE
Sbjct: 37 TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS--LPELPPHLE 94
Query: 70 DLTTLDLSHNNIKQIPDALEN 90
+L S N++ ++P+ ++
Sbjct: 95 ---SLVASCNSLTELPELPQS 112
Score = 42.7 bits (101), Expect = 8e-05
Identities = 8/73 (10%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLE------------DLTTLDLS 77
++NL ++ E ++ +++ + + P + E L+L+
Sbjct: 20 SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN 79
Query: 78 HNNIKQIPDALEN 90
+ + +P+ +
Sbjct: 80 NLGLSSLPELPPH 92
Score = 41.5 bits (98), Expect = 2e-04
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + N L L LN N+I++ + LE L++S+N + +
Sbjct: 280 TFLDVSENIFSGLSELPPNL---YYLNASSNEIRS--LCDLPPSLE---ELNVSNNKLIE 331
Query: 84 IPDALEN 90
+P
Sbjct: 332 LPALPPR 338
Score = 37.3 bits (87), Expect = 0.004
Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 21/83 (25%)
Query: 24 EHLSIVNNNLEKL---FGELTELQC-------------LRTLNLRYNKIKNSGIPVDLFH 67
+ L + N L + + +L+ L+ L++ N ++ P
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE--FPDIPES 417
Query: 68 LEDLTTLDLSHNNIKQIPDALEN 90
+EDL ++ + +
Sbjct: 418 VEDL---RMNSERVVDPYEFAHE 437
Score = 32.3 bits (74), Expect = 0.14
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 42 ELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKR 101
L+ + + +PV+ +++ T + + ++ +R A R
Sbjct: 9 SNTFLQEPLRHSSNLTE--MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 102 ACSAIHAVNL 111
C A L
Sbjct: 67 DCLDRQAHEL 76
Score = 29.2 bits (66), Expect = 1.4
Identities = 7/57 (12%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
+ L + N L + ++ LR + ++ + D D+ ++
Sbjct: 399 KQLHVETNPLREFPDIPESVEDLR---MNSERVVD--PYEFAHETTDKLEDDVFEHH 450
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 53.6 bits (129), Expect = 2e-08
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 15 SESVTIGLT--EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDL 71
SV + L +L I + + F G L L L + N + + +P L +L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 72 TTLDLSHNNIKQIPD 86
T LDLS ++Q+
Sbjct: 473 TFLDLSQCQLEQLSP 487
Score = 52.4 bits (126), Expect = 5e-08
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L V NL L + L+ L+ LN+ +N I++ +P +L +L LDLS N I+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 83 QIP----DALENAKRTKATLD 99
I L +LD
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLD 183
Score = 51.6 bits (124), Expect = 9e-08
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 24 EHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
E L + N+ ++ F TEL+ L L+L ++ + F L L L+++ N
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMASNQ 505
Query: 81 IKQIPD 86
+K +PD
Sbjct: 506 LKSVPD 511
Score = 51.3 bits (123), Expect = 1e-07
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
T++L + N L L L+ L+L +I I + L L+TL L+ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNP 87
Query: 81 IKQIPD 86
I+ +
Sbjct: 88 IQSLAL 93
Score = 50.9 bits (122), Expect = 2e-07
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK 82
+ L+ +N F +L L L+L N + G L LDLS N +
Sbjct: 328 KRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 83 QIPDALENAKRTKATLD 99
+ ++ + LD
Sbjct: 387 TMSSNFLGLEQLE-HLD 402
Score = 50.5 bits (121), Expect = 2e-07
Identities = 12/63 (19%), Positives = 28/63 (44%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
++L + N + + L+ L L+ +++ +K L +L LD+SH + +
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 84 IPD 86
+
Sbjct: 436 AFN 438
Score = 47.0 bits (112), Expect = 3e-06
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 24 EHLSIVNNNLEKL---FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
E L + N L L+ L+L +N + + + LE L LD H+N
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSN 407
Query: 81 IKQIPDA 87
+KQ+ +
Sbjct: 408 LKQMSEF 414
Score = 45.5 bits (108), Expect = 1e-05
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L + N ++ L G + L L+ L + + + HL+ L L+++HN I
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLI 136
Query: 82 KQIPD 86
+
Sbjct: 137 QSFKL 141
Score = 43.5 bits (103), Expect = 4e-05
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 24 EHLSIVNNNLEKLFGE-LTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L + LE+L L L+ LN+ N++K+ +P +F L L + L N
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--VPDGIFDRLTSLQKIWLHTNPW 530
Score = 40.5 bits (95), Expect = 4e-04
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+HL +VN + +L+ L+ L NK N+ L L LDLS N +
Sbjct: 307 QHLELVNCKFGQF--PTLKLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSF 361
Query: 84 IP 85
Sbjct: 362 KG 363
Score = 38.9 bits (91), Expect = 0.001
Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 7/114 (6%)
Query: 5 EPGTFCMASKSESVTIGLTEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSG 60
+ E + L E + NLEK L L L Y
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRN--EGNLEKFDKSALEGLCNLTIEE-FRLAYLDYYLDD 273
Query: 61 IPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNF 114
I L ++++ L I+++ D N L + L++
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327
Score = 32.8 bits (75), Expect = 0.13
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDL----- 76
L L + N + + + L L LR N + + + L L L
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 77 -SHNNIKQIPD 86
+ N+++
Sbjct: 238 RNEGNLEKFDK 248
Score = 32.4 bits (74), Expect = 0.15
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 48 TLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
T IP +L LDLS N ++ +
Sbjct: 11 TYQCMELNF--YKIPDNLP--FSTKNLDLSFNPLRHLGS 45
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 50.8 bits (122), Expect = 3e-08
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E LS +N L + L +L L+ L L N++ G+ V +LT L+LS N IK
Sbjct: 45 EFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKD 102
Query: 84 IPD 86
+
Sbjct: 103 LST 105
Score = 45.4 bits (108), Expect = 2e-06
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 24 EHLSIVNNNLEKLFGELTE-LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L + +N + L E L LNL NKIK+ L LE+L +LDL + +
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
Query: 83 QIPD 86
+ D
Sbjct: 127 NLND 130
Score = 43.1 bits (102), Expect = 1e-05
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIKQI 84
L +N KL G E + L L+ + + + +P L L L+LS N +
Sbjct: 24 LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGG 79
Query: 85 PDAL 88
+ L
Sbjct: 80 LEVL 83
Score = 36.2 bits (84), Expect = 0.004
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
++ L L ++ + E+L L + + I
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI 57
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 52.8 bits (127), Expect = 4e-08
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
T L + N ++ L E L L L N + + F +L +L TL L N
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--VEPGAFNNLFNLRTLGLRSNR 91
Query: 81 IKQIPDAL 88
+K IP +
Sbjct: 92 LKLIPLGV 99
Score = 52.4 bits (126), Expect = 5e-08
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
E L + N + + G L LRTL LR N++K IP+ +F L +LT LD+S N I
Sbjct: 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL--IPLGVFTGLSNLTKLDISENKI 116
Query: 82 KQIPDAL 88
+ D +
Sbjct: 117 VILLDYM 123
Score = 51.6 bits (124), Expect = 9e-08
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNI 81
LSI + NL + + + L LR LNL YN I I + H L L + L +
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQL 284
Query: 82 KQIP-DALEN 90
+ A
Sbjct: 285 AVVEPYAFRG 294
Score = 50.5 bits (121), Expect = 2e-07
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L I N + L +L L++L + N + I F L L L L N+
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFSGLNSLEQLTLEKCNL 164
Query: 82 KQIPD 86
IP
Sbjct: 165 TSIPT 169
Score = 48.9 bits (117), Expect = 6e-07
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNN-LEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
+ L I + L+ + L +L++ + + +P HL L L+LS+N I
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPI 260
Query: 82 KQIPD 86
I
Sbjct: 261 STIEG 265
Score = 47.8 bits (114), Expect = 2e-06
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
+ L + +N+L + F L L+ L L + + IP + HL L L L H
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLE---QLTLEKCNL--TSIPTEALSHLHGLIVLRLRH 185
Query: 79 NNIKQIPD 86
NI I D
Sbjct: 186 LNINAIRD 193
Score = 47.4 bits (113), Expect = 2e-06
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
L + + N+ + L L+ L + + + + + +LT+L ++H N+
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHCNLT 237
Query: 83 QIPD 86
+P
Sbjct: 238 AVPY 241
Score = 43.9 bits (104), Expect = 3e-05
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
L++ N + + EL LQ + L ++ + F L L L++S
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQ---EIQLVGGQLAV--VEPYAFRGLNYLRVLNVSG 305
Query: 79 NNIKQIP 85
N + +
Sbjct: 306 NQLTTLE 312
Score = 43.2 bits (102), Expect = 5e-05
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNI 81
+ + +V L + L LR LN+ N++ + +FH + +L TL L N +
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT--LEESVFHSVGNLETLILDSNPL 332
Score = 31.6 bits (72), Expect = 0.25
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 47 RTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
R + + +P + + LDL N IK +
Sbjct: 14 RAVLCHRKRF--VAVPEGIP--TETRLLDLGKNRIKTLNQ 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 52.3 bits (126), Expect = 4e-08
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
EHL++ N + + G++ L+TL+L NK+ + + + +T + L +N +
Sbjct: 172 EHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVL 228
Query: 84 IPDALEN 90
I AL
Sbjct: 229 IEKALRF 235
Score = 51.9 bits (125), Expect = 6e-08
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKLFGE-LTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
+ + +++L++ ++ L+L N + S I L L+LS N +
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70
Query: 82 KQIPD 86
+ D
Sbjct: 71 YETLD 75
Score = 51.5 bits (124), Expect = 7e-08
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L + N L ++ +L L LNL N + DL L L TLDL++N ++
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETL-DLESLSTLRTLDLNNNYVQ 93
Query: 83 QIP 85
++
Sbjct: 94 ELL 96
Score = 49.2 bits (118), Expect = 5e-07
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+++ + NN + L + ++ L+L+ N+I + L L+L +N I
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 83 QIPD 86
+
Sbjct: 183 DVKG 186
Score = 48.8 bits (117), Expect = 5e-07
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L++ +N L + +L L LRTL+L N ++ +L + TL ++NNI +
Sbjct: 61 ELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISR 113
Query: 84 IP 85
+
Sbjct: 114 VS 115
Score = 46.5 bits (111), Expect = 3e-06
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK 82
E L NNN+ ++ + Q + + L NKI + + + LDL N I
Sbjct: 102 ETLHAANNNISRV--SCSRGQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 83 QIPDA 87
+ A
Sbjct: 158 TVNFA 162
Score = 44.6 bits (106), Expect = 1e-05
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQIPD 86
+ + + + L ++ LDLS N + QI
Sbjct: 9 GNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISA 51
Score = 37.7 bits (88), Expect = 0.003
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+S+ NN L + L Q L +LR N + F ++ ++ +K+
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF--HCGTLRDFFSKNQRVQTVAKQTVKK 274
Query: 84 IPD 86
+
Sbjct: 275 LTG 277
Score = 29.6 bits (67), Expect = 1.1
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 67 HLEDLTTLDLSHNNIKQIPDAL 88
+ ++ +++KQ +L
Sbjct: 8 NGNRYKIEKVTDSSLKQALASL 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 52.9 bits (127), Expect = 4e-08
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
EHL++ N + + G++ L+TL+L NK+ + + + +T + L +N +
Sbjct: 172 EHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVL 228
Query: 84 IPDALEN 90
I AL
Sbjct: 229 IEKALRF 235
Score = 51.0 bits (122), Expect = 1e-07
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
+ + +++L++ ++ L+L N + S I L L+LS N
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNV 69
Query: 81 IKQIPD 86
+ + D
Sbjct: 70 LYETLD 75
Score = 49.5 bits (118), Expect = 5e-07
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L + N L ++ +L L LNL N + DL L L TLDL++N ++
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETL-DLESLSTLRTLDLNNNYVQ 93
Query: 83 QIP 85
++
Sbjct: 94 ELL 96
Score = 48.3 bits (115), Expect = 1e-06
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+++ + NN + L + ++ L+L+ N+I + L L+L +N I
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 83 QIPDAL 88
+ +
Sbjct: 183 DVKGQV 188
Score = 47.5 bits (113), Expect = 2e-06
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + NN ++ EL + TL+ N I S + + + L++N I
Sbjct: 83 RTLDLNNNYVQ----ELLVGPSIETLHAANNNI--SRVSCSRG--QGKKNIYLANNKITM 134
Query: 84 IPD 86
+ D
Sbjct: 135 LRD 137
Score = 47.5 bits (113), Expect = 2e-06
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L++ +N L + +L L LRTL+L N ++ +L + TL ++NNI +
Sbjct: 61 ELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISR 113
Query: 84 IPDAL 88
+ +
Sbjct: 114 VSCSR 118
Score = 43.7 bits (103), Expect = 3e-05
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQIPD 86
+ + + + L ++ LDLS N + QI
Sbjct: 9 GNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISA 51
Score = 41.0 bits (96), Expect = 3e-04
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 22 LTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
L + + +L L L+ L + + + + +D
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347
Query: 81 IKQIPDALENAKRTKATLD 99
+ + D + K+ K TL+
Sbjct: 348 YRTVIDQVTLRKQAKITLE 366
Score = 40.2 bits (94), Expect = 4e-04
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIK 82
LS + E+L E R ++ + + + + + TL+ +
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRT--VIDQVTLRKQAKITLEQKKKALD 373
Query: 83 QIPDALENA 91
+ A
Sbjct: 374 EQVSNGRRA 382
Score = 37.1 bits (86), Expect = 0.005
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+S+ NN L + L Q L +LR N + + + T+ +K+
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKK 274
Query: 84 IPD 86
+
Sbjct: 275 LTG 277
Score = 28.7 bits (64), Expect = 2.1
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 60 GIPVDLFHLEDLTTLDLSHNNIKQIPDAL 88
I + ++ +++KQ +L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASL 29
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 50.9 bits (122), Expect = 4e-08
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E LS++N L + L +L L+ L L N+I G+ + L +LT L+LS N +K
Sbjct: 52 EFLSLINVGLISVSN-LPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKD 109
Query: 84 IPD 86
I
Sbjct: 110 IST 112
Score = 42.4 bits (100), Expect = 3e-05
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIKQI 84
L +N K+ G E L L+L + + S +P L L L+LS N I
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELSENRIFGG 86
Query: 85 PDALENA 91
D L
Sbjct: 87 LDMLAEK 93
Score = 36.3 bits (84), Expect = 0.004
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 42 ELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
+R L L K + I +L L L + + +
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV 64
Score = 32.4 bits (74), Expect = 0.072
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 24 EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKN-----SGIPVDLFHLEDLTTLDL 76
HL++ N L+ + L +L+CL++L+L ++ N + L LT LD
Sbjct: 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV---FKLLPQLTYLDG 154
Query: 77 SHNNIKQIPDA 87
++ PD+
Sbjct: 155 YDREDQEAPDS 165
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 52.3 bits (126), Expect = 5e-08
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
E +++ + + F + LQ L +L + S +P L L L L LS N
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQEL---DLTATHL--SELPSGLVGLSTLKKLVLSAN 311
Query: 80 NIKQIPD 86
+ +
Sbjct: 312 KFENLCQ 318
Score = 52.3 bits (126), Expect = 6e-08
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSH 78
+ + + E + F L E+ + ++NL+ + I + FH L LDL+
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMS-VESINLQKHYF--FNISSNTFHCFSGLQELDLTA 287
Query: 79 NNIKQIPDALEN 90
++ ++P L
Sbjct: 288 THLSELPSGLVG 299
Score = 51.9 bits (125), Expect = 8e-08
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
TE L N L + + L L L+L +I I D F L TL L+ N
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANP 92
Query: 81 IKQIPDAL 88
+ + +
Sbjct: 93 LIFMAETA 100
Score = 51.2 bits (123), Expect = 1e-07
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 24 EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
E L + L+ L L+ LNL ++ + LF L L L+L N+
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL--DISSEQLFDGLPALQHLNLQGNH 460
Query: 81 IKQIPDALENA 91
+ N+
Sbjct: 461 FPKGNIQKTNS 471
Score = 51.2 bits (123), Expect = 1e-07
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L + N E L + L L+++ N + L +LE+L LDLSH++I+
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 83 QIP 85
Sbjct: 364 TSD 366
Score = 51.2 bits (123), Expect = 1e-07
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
+HL + + + F L + L +L L N I S I + E L LD +N I
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI--SSIKLPKGFPTEKLKVLDFQNNAI 165
Query: 82 KQIPD 86
+
Sbjct: 166 HYLSK 170
Score = 50.8 bits (122), Expect = 2e-07
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSH 78
+HL++ N+ K L L L L L + + S I F L+ + +DLSH
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL--SSIDQHAFTSLKMMNHVDLSH 509
Query: 79 NNIKQIP 85
N +
Sbjct: 510 NRLTSSS 516
Score = 49.6 bits (119), Expect = 5e-07
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L++ N L E L L+L + ++K +L L L+LSH+ +
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438
Query: 83 QIPDAL 88
+ L
Sbjct: 439 ISSEQL 444
Score = 48.5 bits (116), Expect = 1e-06
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 24 EHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
HLSI N G L L+ LR L+L ++ I+ S L L +L+LS+N
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 81 IKQIP 85
+
Sbjct: 388 PLSLK 392
Score = 46.2 bits (110), Expect = 6e-06
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLT--TLDLSHN 79
E L + +N++ + + + L+ L+ + N I + + L+ T +L+L+ N
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLNGN 189
Query: 80 NIKQIPDALENAKR 93
+I I ++
Sbjct: 190 DIAGIEPGAFDSAV 203
Score = 45.4 bits (108), Expect = 1e-05
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
+ L + N L + L+ + L+ L I S I + + L +L L N+I
Sbjct: 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGI--SSIDFIPLHNQKTLESLYLGSNHI 141
Query: 82 KQIPD 86
I
Sbjct: 142 SSIKL 146
Score = 45.4 bits (108), Expect = 1e-05
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
E L + +L + T L+ + ++L +N++ + ++ L+L+ N+I
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL--TSSSIEALSHLKGIYLNLASNHIS 536
Query: 83 QIP 85
I
Sbjct: 537 IIL 539
Score = 43.5 bits (103), Expect = 4e-05
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
+ + + N L ++ G L L +N + I F L +LT LDL+
Sbjct: 13 VNKTYNCENLGLNEIPGTLPNS--TECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQ 68
Query: 81 IKQIPD 86
I I +
Sbjct: 69 IYWIHE 74
Score = 42.7 bits (101), Expect = 8e-05
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
+ L NN + L L + L +LNL N I +GI F +L+
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDI--AGIEPGAFDSAVFQSLNFGGT 212
Query: 80 NI-KQIPDALENAK 92
I L+N+
Sbjct: 213 QNLLVIFKGLKNST 226
Score = 38.5 bits (90), Expect = 0.002
Identities = 6/63 (9%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQ 83
L++ N++ + + ++LN + ++ L + +
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242
Query: 84 IPD 86
I
Sbjct: 243 ISP 245
Score = 38.5 bits (90), Expect = 0.002
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 11/63 (17%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSH 78
H+ + +N L L + LNL N I S I L L T++L
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGI----YLNLASNHI--SIILPSLLPILSQQRTINLRQ 556
Query: 79 NNI 81
N +
Sbjct: 557 NPL 559
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 52.2 bits (125), Expect = 6e-08
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L I +NNL L EL RTL + N++ + +PV L +L+ ++
Sbjct: 64 TTLVIPDNNLTSLPALPPEL---RTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTHLPA 118
Query: 84 IPDALEN 90
+P L
Sbjct: 119 LPSGLCK 125
Score = 47.6 bits (113), Expect = 2e-06
Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 8/67 (11%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + N L L L L + + L L + N +
Sbjct: 84 RTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTS 135
Query: 84 IPDALEN 90
+P
Sbjct: 136 LPVLPPG 142
Score = 47.2 bits (112), Expect = 3e-06
Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ L + N L L +EL + L + N++ + +P+ L +L + N + +
Sbjct: 224 KELIVSGNRLTSLPVLPSEL---KELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTR 275
Query: 84 IPDALEN 90
+P++L +
Sbjct: 276 LPESLIH 282
Score = 44.9 bits (106), Expect = 2e-05
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ LS+ +N L L +EL L N++ + +P+ L L +S N +
Sbjct: 144 QELSVSDNQLASLPALPSELC---KLWAYNNQLTS--LPMLPSGL---QELSVSDNQLAS 195
Query: 84 IPDALEN 90
+P
Sbjct: 196 LPTLPSE 202
Score = 44.5 bits (105), Expect = 2e-05
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L I N L L LQ L++ N++ + +P L L +N +
Sbjct: 124 CKLWIFGNQLTSLPVLPPGLQ---ELSVSDNQL--ASLPALPSE---LCKLWAYNNQLTS 175
Query: 84 IPDALEN 90
+P
Sbjct: 176 LPMLPSG 182
Score = 44.5 bits (105), Expect = 2e-05
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 22/84 (26%)
Query: 24 EHLSIVNNNLEKL---FGELTELQC--------------LRTLNLRYNKIKNSGIPVDLF 66
+ LS+ +N L L EL +L L+ L + N++ + +PV
Sbjct: 184 QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL--TSLPV--- 238
Query: 67 HLEDLTTLDLSHNNIKQIPDALEN 90
+L L +S N + +P
Sbjct: 239 LPSELKELMVSGNRLTSLPMLPSG 262
Score = 43.3 bits (102), Expect = 5e-05
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 30 NNNLEKLFGELTELQC--LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA 87
+ + ++ LN+ + + +P L +TTL + NN+ +P
Sbjct: 24 SRGRAAVVQKMRACLNNGNAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTSLPAL 79
Query: 88 LEN 90
Sbjct: 80 PPE 82
Score = 37.6 bits (87), Expect = 0.004
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
LS+ N L +L L L T+NL N + S + ++T+ I +
Sbjct: 264 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL--SERTLQALR--EITSAPGYSGPIIR 319
Query: 84 IPDALENAKRTKATLD 99
A +A R L
Sbjct: 320 FDMAGASAPRETRALH 335
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 52.1 bits (125), Expect = 7e-08
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 21 GLT--EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
GL+ +L++ NL ++ LT L L L+L N + I F L L L +
Sbjct: 183 GLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLSA--IRPGSFQGLMHLQKLWMI 239
Query: 78 HNNIKQIP 85
+ I+ I
Sbjct: 240 QSQIQVIE 247
Score = 51.7 bits (124), Expect = 7e-08
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
T L++ N ++ + L+ L L L N I+ I + F+ L +L TL+L N
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGAFNGLANLNTLELFDNR 123
Query: 81 IKQIPD 86
+ IP+
Sbjct: 124 LTTIPN 129
Score = 49.0 bits (117), Expect = 6e-07
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
E L + N++ + G L L TL L N++ + IP F +L L L L +N I
Sbjct: 91 EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPI 148
Query: 82 KQIPD 86
+ IP
Sbjct: 149 ESIPS 153
Score = 47.4 bits (113), Expect = 2e-06
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNL-RYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
+ L + NN +E + + LR L+L ++ I F L +L L+L+ N
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY--ISEGAFEGLSNLRYLNLAMCN 196
Query: 81 IKQIPD 86
+++IP+
Sbjct: 197 LREIPN 202
Score = 46.7 bits (111), Expect = 4e-06
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
+ L + N+L + G L L+ L + ++I+ I + F +L+ L ++L+HNN+
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHNNL 267
Query: 82 KQIP 85
+P
Sbjct: 268 TLLP 271
Score = 42.8 bits (101), Expect = 7e-05
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 30 NNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
L + G L LR LNL ++ IP +L L L LDLS N++ I
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLSGNHLSAIRP 224
Score = 40.1 bits (94), Expect = 5e-04
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
+ L ++ + ++ + LQ L +NL +N + +P DLF L L + L HN
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL--LPHDLFTPLHHLERIHLHHN 289
Score = 30.9 bits (70), Expect = 0.44
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
+ + +P + + L+L N I+ I
Sbjct: 45 FSKVICVRKNL--REVPDGIS--TNTRLLNLHENQIQIIK 80
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 51.7 bits (124), Expect = 8e-08
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 21 GLT--EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
GL ++L++ N++ + LT L L L + N I F L L L +
Sbjct: 194 GLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPE--IRPGSFHGLSSLKKLWVM 250
Query: 78 HNNIKQI-PDALEN 90
++ + I +A +
Sbjct: 251 NSQVSLIERNAFDG 264
Score = 50.5 bits (121), Expect = 2e-07
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
T +L+++ NN++ + L L L L N I+ I V F+ L L TL+L N
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ--IEVGAFNGLASLNTLELFDNW 134
Query: 81 IKQIPD 86
+ IP
Sbjct: 135 LTVIPS 140
Score = 47.0 bits (112), Expect = 3e-06
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
E L + N+ ++ F L+ L+ L + +++ I + F L L L+L+H
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLK---KLWVMNSQVSL--IERNAFDGLASLVELNLAH 275
Query: 79 NNIKQIP 85
NN+ +P
Sbjct: 276 NNLSSLP 282
Score = 46.7 bits (111), Expect = 3e-06
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNL-RYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
L + NN +E + + L L+L K++ I F L +L L+L N
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY--ISEGAFEGLFNLKYLNLGMCN 207
Query: 81 IKQIPD 86
IK +P+
Sbjct: 208 IKDMPN 213
Score = 42.8 bits (101), Expect = 7e-05
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 30 NNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
LE + G L L+ LNL IK+ +P +L L L L++S N+ +I
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMSGNHFPEIRP 235
Score = 39.7 bits (93), Expect = 6e-04
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
+ L ++N+ + + L L LNL +N + + +P DLF L L L L HN
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS--LPHDLFTPLRYLVELHLHHN 300
Score = 32.4 bits (74), Expect = 0.15
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
+ + S +P + + L+L NNI+ I
Sbjct: 56 FSKVVCTRRGL--SEVPQGIP--SNTRYLNLMENNIQMIQ 91
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 51.7 bits (124), Expect = 8e-08
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
L + N +L F L L+ L L + + + + F L L L L
Sbjct: 82 IILKLDYNQFLQLETGAFNGLANLE---VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 79 NNIKQIP 85
NNIK+I
Sbjct: 139 NNIKKIQ 145
Score = 50.5 bits (121), Expect = 2e-07
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLS 77
E L++ N + K+ F LT L LNL N + + I +F L+ L LDLS
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLL---KLNLSQNFLGS--IDSRMFENLDKLEVLDLS 355
Query: 78 HNNIKQIPD 86
+N+I+ + D
Sbjct: 356 YNHIRALGD 364
Score = 49.0 bits (117), Expect = 6e-07
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
++ + N++ +L F L +LQ L + I + F L L L L
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQ---FLKVEQQTPGLV-IRNNTFRGLSSLIILKLD 87
Query: 78 HNNIKQIPD 86
+N Q+
Sbjct: 88 YNQFLQLET 96
Score = 46.7 bits (111), Expect = 4e-06
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 21 GLT--EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDL 76
GLT L++ N L + L L L+L YN I+ + F L +L L L
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA--LGDQSFLGLPNLKELAL 378
Query: 77 SHNNIKQIPD 86
N +K +PD
Sbjct: 379 DTNQLKSVPD 388
Score = 42.8 bits (101), Expect = 7e-05
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 21 GLT--EHLSIVNNNLEKLF---GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTL 74
GL E L++ NL+ L L L LR N IK P F ++ L
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVL 159
Query: 75 DLSHNNIKQIPD 86
DL+ N +K I +
Sbjct: 160 DLTFNKVKSICE 171
Score = 42.4 bits (100), Expect = 1e-04
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 27 SIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
S + N + F L ++T +L +KI + +F H DL L L+ N I
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASG-VKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEI 311
Query: 82 KQIPD 86
+I D
Sbjct: 312 NKIDD 316
Score = 38.2 bits (89), Expect = 0.002
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 21 GLT--EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
L E L + N++ L F L L+ L L N++K+ +P +F L L
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLK---ELALDTNQLKS--VPDGIFDRLTSLQK 399
Query: 74 LDLSHNN 80
+ L N
Sbjct: 400 IWLHTNP 406
Score = 34.3 bits (79), Expect = 0.038
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQIPDA 87
+ ++L N I + + F L+DL L + +
Sbjct: 32 VNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRN 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 50.8 bits (122), Expect = 1e-07
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L + L++L G L L+ L L+ N ++ +P D F L +LT L L N I
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLHGNRI 165
Query: 82 KQIPD 86
+P+
Sbjct: 166 SSVPE 170
Score = 50.0 bits (120), Expect = 2e-07
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 21 GLT--EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDL 76
GL ++L + +N L+ L +L L L L N+I + +P F L L L L
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLL 184
Query: 77 SHNNIKQIPD 86
N + +
Sbjct: 185 HQNRVAHVHP 194
Score = 46.5 bits (111), Expect = 3e-06
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
HL + N + + F L L L L N++ + + F L L TL L
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSL---DRLLLHQNRVAH--VHPHAFRDLGRLMTLYLFA 210
Query: 79 NNIKQIPD 86
NN+ +P
Sbjct: 211 NNLSALPT 218
Score = 46.5 bits (111), Expect = 3e-06
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 30 NNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDA 87
N L + L L TL+L ++ + LF L L L L N ++ +PD
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQE--LGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 88 L 88
Sbjct: 148 T 148
Score = 45.8 bits (109), Expect = 6e-06
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
++ + + N + + + L L L N + + I F L L LDLS N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNA 91
Query: 81 -IKQIPD 86
++ +
Sbjct: 92 QLRSVDP 98
Score = 39.2 bits (92), Expect = 7e-04
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 21 GLT--EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
GL + L + N + + F +L L TL L N + +P + L L
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLM---TLYLFANNLSA--LPTEALAPLRALQY 229
Query: 74 LDLSHN 79
L L+ N
Sbjct: 230 LRLNDN 235
Score = 28.4 bits (64), Expect = 2.1
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 61 IPVDLFHLEDLTTLDLSHNNIKQIPD 86
+PV + + L N I +P
Sbjct: 26 VPVGIP--AASQRIFLHGNRISHVPA 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 50.4 bits (121), Expect = 1e-07
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 21 GLT--EHLSIVNNNLEKL----FGELTELQCLR-TLNLRYNKIKNSGIPVDLFHLEDLTT 73
LT EHL + +N ++ + L ++ L +L+L N + I F L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLKE 204
Query: 74 LDLSHNNIKQIPD 86
L L N +K +PD
Sbjct: 205 LALDTNQLKSVPD 217
Score = 49.6 bits (119), Expect = 2e-07
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 21 GLT--EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
GL+ + L V NL L G L L+ LN+ +N I++ +P + F +L +L
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLK---ELNVAHNLIQSFKLP-EYFSNLTNLEH 153
Query: 74 LDLSHNNIKQIP----DALENAKRTKATLD 99
LDLS N I+ I L +LD
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Score = 48.0 bits (115), Expect = 8e-07
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSH 78
+ L + ++ + + L+ L TL L N I++ + + F L L L
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLSHLS---TLILTGNPIQS--LALGAFSGLSSLQKLVAVE 109
Query: 79 NNIKQIPD 86
N+ + +
Sbjct: 110 TNLASLEN 117
Score = 45.3 bits (108), Expect = 8e-06
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L + N ++ L G + L L+ L + + + HL+ L L+++HN I
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLI 136
Query: 82 KQIPDA 87
+
Sbjct: 137 QSFKLP 142
Score = 39.2 bits (92), Expect = 7e-04
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQIPD 86
+ L+L +N +++ + F +L LDLS I+ I D
Sbjct: 30 TKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIED 69
Score = 37.3 bits (87), Expect = 0.003
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
L L + N + + G E++ L+ L L N++K+ +P +F L L + L N
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTN 234
Score = 27.2 bits (61), Expect = 5.5
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 6/27 (22%)
Query: 59 SGIPVDLFHLEDLTTLDLSHNNIKQIP 85
+P LDLS N ++ +
Sbjct: 24 DNLPFST------KNLDLSFNPLRHLG 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 51.3 bits (123), Expect = 1e-07
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
TE L + N + + L+ L+ L L + I + F L +L LDL +
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSK 84
Query: 81 IKQIPD 86
I +
Sbjct: 85 IYFLHP 90
Score = 50.2 bits (120), Expect = 3e-07
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 24 EHLSIVNNNLEKLFGE---LTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
L + L + L+ L L+L N+I++ + L L ++D S N
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159
Query: 81 IKQIPD 86
I + +
Sbjct: 160 IFLVCE 165
Score = 49.4 bits (118), Expect = 5e-07
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 24 EHLSIVNNNLEKLFGE-LTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
+ L++ N L +L+ L + ++L+ N I + I F LE L TLDL N +
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI--AIIQDQTFKFLEKLQTLDLRDNAL 374
Query: 82 KQIPD 86
I
Sbjct: 375 TTIHF 379
Score = 49.0 bits (117), Expect = 7e-07
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 24 EHLSIVNNNLEKLFGE--LTELQCLRTLNLRYNKIK---NSGIPVDLF-HLEDLTTLDLS 77
+ L + N G+ +E L L L N ++ + + D+F L L L L+
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488
Query: 78 HNNIKQIPD 86
HN + +P
Sbjct: 489 HNYLNSLPP 497
Score = 49.0 bits (117), Expect = 8e-07
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
HL + + + L F L +L+ L NL YNKI + I + F L++L L+LS+
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVL---NLAYNKI--NKIADEAFYGLDNLQVLNLSY 323
Query: 79 NNIKQIPD 86
N + ++
Sbjct: 324 NLLGELYS 331
Score = 48.3 bits (115), Expect = 1e-06
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L + +N L L G + L LR L+L N++ + + +L LD+S N +
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV--LSHNDL-PANLEILDISRNQLL 539
Query: 83 QI-PDALENAKRTKATLDKRACSAIHAVNLRNFL 115
PD + T +K C N+L
Sbjct: 540 APNPDVFVSLSVLDITHNKFICE-CELSTFINWL 572
Score = 47.5 bits (113), Expect = 3e-06
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 24 EHLSIVNNNLEKLF------GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDL 76
E L + N L+ + L L+ L L +N + + +P +F L L L L
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS--LPPGVFSHLTALRGLSL 511
Query: 77 SHNNIKQIPD 86
+ N + +
Sbjct: 512 NSNRLTVLSH 521
Score = 46.3 bits (110), Expect = 5e-06
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
+N++ F L +R L+L + + + + +F L+DL L+L++
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSS-VRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAY 299
Query: 79 NNIKQIPD 86
N I +I D
Sbjct: 300 NKINKIAD 307
Score = 42.5 bits (100), Expect = 1e-04
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQI--PD 86
NL ++ L + L L +N I+ + F LE L L+L +
Sbjct: 13 FCNLTQVPQVLNTTE---RLLLSFNYIRT--VTASSFPFLEQLQLLELGSQYTPLTIDKE 67
Query: 87 ALEN 90
A N
Sbjct: 68 AFRN 71
Score = 40.2 bits (94), Expect = 5e-04
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ + N L L ++L N+++N I L + L L L+ N
Sbjct: 384 PDIFLSGNKLVTLP---KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440
Query: 84 IPD 86
Sbjct: 441 CSG 443
Score = 40.2 bits (94), Expect = 6e-04
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 24 EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
+ + N LE L L + L+ L L N+ + L L L N +
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463
Query: 82 KQIPD 86
+ +
Sbjct: 464 QLAWE 468
Score = 35.2 bits (81), Expect = 0.020
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKN-----SGIPVDLFHLEDLTTL 74
+ + +N + + L L +L N + + G ++ F L L
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209
Query: 75 DLSHNNIKQIPDAL 88
D+S N
Sbjct: 210 DVSGNGWTVDITGN 223
Score = 32.5 bits (74), Expect = 0.16
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 47 RTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA 87
R R+ + + +P L L LS N I+ + +
Sbjct: 7 RIAFYRFCNL--TQVPQVL---NTTERLLLSFNYIRTVTAS 42
Score = 32.1 bits (73), Expect = 0.23
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 12/71 (16%)
Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIK-----------NSGIPVDLFHLEDLTTL 74
S V+ + K + L L++ N + L +
Sbjct: 187 YSRVSVDWGKCMNPFRNMV-LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 75 DLSHNNIKQIP 85
+NIK
Sbjct: 246 GFGFHNIKDPD 256
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 50.5 bits (121), Expect = 2e-07
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
+ L + NN + + +L L+ L L N I I D F L L LDLS+N
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT--IEEDSFSSLGSLEHLDLSYNY 111
Query: 81 IKQIP 85
+ +
Sbjct: 112 LSNLS 116
Score = 46.7 bits (111), Expect = 4e-06
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
+ L + +N + + F L L+ L+L YN + N + F L LT L+L
Sbjct: 79 QALVLTSNGINTIEEDSFSSLGSLE---HLDLSYNYLSN--LSSSWFKPLSSLTFLNLLG 133
Query: 79 NNIKQIPDA 87
N K + +
Sbjct: 134 NPYKTLGET 142
Score = 43.2 bits (102), Expect = 5e-05
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 25 HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
+ + +L L + R + + + + L + L L+ S N
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQ 288
Query: 81 IKQIPD 86
+K +PD
Sbjct: 289 LKSVPD 294
Score = 41.3 bits (97), Expect = 2e-04
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
++ I + +L ++ L ++ L L N++K+ +P +F L L + L N
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQKIWLHTNP 312
Score = 39.7 bits (93), Expect = 6e-04
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 34 EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPD 86
K F LT L+ L + + +++ +++++ L L + +
Sbjct: 167 RKDFAGLTFLE---ELEIDASDLQS--YEPKSLKSIQNVSHLILHMKQHILLLE 215
Score = 37.4 bits (87), Expect = 0.003
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 8/75 (10%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKN---SGIPVDLF----HLEDLTTLD 75
HL + L + + L LR + S + +
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260
Query: 76 LSHNNIKQIPDALEN 90
++ ++ Q+ L
Sbjct: 261 ITDESLFQVMKLLNQ 275
Score = 28.9 bits (65), Expect = 2.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 61 IPVDLFHLEDLTTLDLSHNNIKQIPDA 87
IP L E + +LDLS+N I I ++
Sbjct: 46 IPSGLT--EAVKSLDLSNNRITYISNS 70
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 49.3 bits (118), Expect = 2e-07
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIK 82
LS+ N ++K+ L L + YN+I + SGI L +L L +S+N I
Sbjct: 73 RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE----KLVNLRVLYMSNNKIT 128
Query: 83 QIPD 86
+
Sbjct: 129 NWGE 132
Score = 46.6 bits (111), Expect = 2e-06
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + +EK+ L+ L+ + L L N I+ S + +E+L L L N IK+
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLS----GMENLRILSLGRNLIKK 84
Query: 84 I 84
I
Sbjct: 85 I 85
Score = 44.7 bits (106), Expect = 7e-06
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L I N + L G + +L LR L + NKI N G L L+ L L L+ N +
Sbjct: 96 EELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154
Query: 84 IPDALEN 90
Sbjct: 155 DYKENNA 161
Score = 39.3 bits (92), Expect = 5e-04
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 34 EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
E+ TE + + L+ I+ + L L+ L LS NNI++I
Sbjct: 16 ERKSVVATEAEKVE-LHGMIPPIEK--MDATLSTLKACKHLALSTNNIEKI 63
Score = 32.0 bits (73), Expect = 0.12
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 24 EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVD---------LFHLEDLT 72
L + NN + +L L L L L N + N + + L +L
Sbjct: 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177
Query: 73 TLD 75
LD
Sbjct: 178 KLD 180
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo
sapiens}
Length = 520
Score = 50.6 bits (121), Expect = 2e-07
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
T L+I N + +L ++ L LR L + +N+I + + +F ++L LDLSHN
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNK 80
Query: 81 IKQIP-DALEN 90
+ +I N
Sbjct: 81 LVKISCHPTVN 91
Score = 46.8 bits (111), Expect = 3e-06
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
L++ +N L F L ++ L+L NKIK+ IP + LE L L+++ N +K
Sbjct: 402 LSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLK 457
Query: 83 QIPD 86
+PD
Sbjct: 458 SVPD 461
Score = 45.6 bits (108), Expect = 9e-06
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 23 TEHLSIVNNNLEKL------FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDL 76
E L + N L++L ++ LQ L++ N + D + L +L++
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQ---QLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 77 SHNNIKQIP 85
S N +
Sbjct: 407 SSNILTDTI 415
Score = 43.3 bits (102), Expect = 5e-05
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
E+L + +N L K+ L+ L+L +N I + ++ L L LS +++
Sbjct: 72 EYLDLSHNKLVKISCHPTVNLK---HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128
Query: 83 QIP 85
+
Sbjct: 129 KSS 131
Score = 42.9 bits (101), Expect = 6e-05
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
HL NN L F L L TL L+ N++K ++ ++ L LD+S N+
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 81 IKQIP 85
+
Sbjct: 386 VSYDE 390
Score = 42.5 bits (100), Expect = 8e-05
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 25 HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
L I +N ++ L F EL+ L+L +NK+ I +L LDLS N
Sbjct: 49 ILIISHNRIQYLDISVFKFNQELE---YLDLSHNKLVK--ISCH--PTVNLKHLDLSFNA 101
Query: 81 IKQIPDA 87
+P
Sbjct: 102 FDALPIC 108
Score = 38.7 bits (90), Expect = 0.002
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 26 LSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQ 83
+ + + +++ L+ N + + + L +L TL L N +K+
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD--TVFENCGHLTELETLILQMNQLKE 362
Query: 84 IPD 86
+
Sbjct: 363 LSK 365
Score = 38.3 bits (89), Expect = 0.002
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
+ L + +N ++ + ++ +L+ L+ LN+ N++K+ +P +F L L + L N
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLHTNP 479
Score = 29.4 bits (66), Expect = 1.2
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 8/40 (20%)
Query: 48 TLNLRYNKIKN--SGIPVDLFHLEDLTTLDLSHNNIKQIP 85
++ N + + + T L++S N I ++
Sbjct: 4 LVDRSKNGLIHVPKDLSQKT------TILNISQNYISELW 37
Score = 28.3 bits (63), Expect = 3.3
Identities = 7/69 (10%), Positives = 20/69 (28%), Gaps = 9/69 (13%)
Query: 24 EHLSIVNNNL------EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDL 76
+ SI N L T L+ L + + ++ ++ +
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP--QSYIYEIFSNMNIKNF 307
Query: 77 SHNNIKQIP 85
+ + + +
Sbjct: 308 TVSGTRMVH 316
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 48.8 bits (117), Expect = 3e-07
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
+ L+I N + ++ L L L + + + IP +L L LT LD+SH+
Sbjct: 69 KDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAH 124
Score = 46.5 bits (111), Expect = 2e-06
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 24 EHLSIVNNNL-EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
E L I+ ++ L+ L L L++ ++ +S + + L + ++DLS+N
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAI 149
Query: 83 QIPDALEN 90
L+
Sbjct: 150 TDIMPLKT 157
Score = 41.1 bits (97), Expect = 1e-04
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
+ + N L L L++LN++++ + + + L L I
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTI 193
Score = 34.5 bits (80), Expect = 0.019
Identities = 5/45 (11%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 41 TELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIKQI 84
++ L + L + + +GI + ++ L +++ +
Sbjct: 41 AQMNSLTYITLANINVTDLTGIE----YAHNIKDLTINNIHATNY 81
Score = 29.9 bits (68), Expect = 0.65
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 57 KNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAK 92
++S + + LT + L++ N+ + +E A
Sbjct: 32 QSSTANITEAQMNSLTYITLANINVTDL-TGIEYAH 66
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 48.1 bits (115), Expect = 3e-07
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ + +N + KL G L+ L+TL + N+I L DLT L L++N++ +
Sbjct: 45 DAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVE 102
Query: 84 IPD 86
+ D
Sbjct: 103 LGD 105
Score = 48.1 bits (115), Expect = 4e-07
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIK 82
L + + + L ++ N+I+ G P L L TL +++N I
Sbjct: 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLLVNNNRIC 77
Query: 83 QIPDALE 89
+I + L+
Sbjct: 78 RIGEGLD 84
Score = 45.0 bits (107), Expect = 5e-06
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 24 EHLSIVNNNLEKLFGELTE-LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+ L + NN + ++ L + L L L L N + G L L+ LT L + N +
Sbjct: 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
Query: 83 QIPD 86
Sbjct: 127 NKKH 130
Score = 38.9 bits (91), Expect = 5e-04
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIKQI 84
+ + +E+ T R L+LR KI + L + +D S N I+++
Sbjct: 2 VKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFD---AIDFSDNEIRKL 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 49.9 bits (119), Expect = 4e-07
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
T+ LS+ N++ +L +++ L LR L L +N+I++ + +F +DL LD+SHN
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS--LDFHVFLFNQDLEYLDVSHNR 111
Query: 81 IKQIP-DALEN 90
++ I + +
Sbjct: 112 LQNISCCPMAS 122
Score = 44.5 bits (105), Expect = 2e-05
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
L++ +N L F L ++ L+L N+I + IP D+ HL+ L L+++ N +
Sbjct: 430 ILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQL 485
Query: 82 KQIPD 86
K +PD
Sbjct: 486 KSVPD 490
Score = 41.8 bits (98), Expect = 1e-04
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
E+L + +N L+ + + L+ L+L +N + + +L LT L LS +
Sbjct: 103 EYLDVSHNRLQNISCCPMASLR---HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
Query: 83 QIP 85
Q+
Sbjct: 160 QLD 162
Score = 41.8 bits (98), Expect = 1e-04
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 25 HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
L + +N + L F +L+ L++ +N+++N I + L LDLS N+
Sbjct: 80 VLRLSHNRIRSLDFHVFLFNQDLE---YLDVSHNRLQN--ISCC--PMASLRHLDLSFND 132
Query: 81 IKQIPDA 87
+P
Sbjct: 133 FDVLPVC 139
Score = 36.8 bits (85), Expect = 0.006
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 23 TEHLSIVNNNLEKL---FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
+ L + N L+ + L TL++ N + + E + L+LS N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 80 NI 81
+
Sbjct: 439 ML 440
Score = 33.3 bits (76), Expect = 0.081
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 10/66 (15%)
Query: 26 LSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
+ ++ + + LN N + L+ L TL L N
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFT---FLNFTQNVFTD--SVFQGCSTLKRLQTLILQRNG 388
Query: 81 IKQIPD 86
+K
Sbjct: 389 LKNFFK 394
Score = 31.0 bits (70), Expect = 0.47
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 24 EHLSIVNNNLEKLFG------ELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDL 76
E+L+I N + + T L+ L +++ L+ ++ L
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336
Query: 77 SHNNIKQIP 85
S ++ I
Sbjct: 337 SISDTPFIH 345
Score = 27.5 bits (61), Expect = 5.1
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 25 HLSIVNNNLE-----KLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
HL + N+ + K FG LT+L L L K + + LDL
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLT---FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181
Query: 80 NIKQIP 85
+IK
Sbjct: 182 HIKGGE 187
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 49.7 bits (118), Expect = 5e-07
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + N L + LT L+ L L L NKIK+ + L L+ L +L L HN I
Sbjct: 68 TKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISD 123
Query: 84 IPDALEN 90
I + L +
Sbjct: 124 I-NGLVH 129
Score = 48.9 bits (116), Expect = 7e-07
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ LS+ +N + + G L L L +L L NKI + L L L TL L N I
Sbjct: 112 KSLSLEHNGISDING-LVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISD 167
Query: 84 IPD 86
I
Sbjct: 168 IVP 170
Score = 48.6 bits (115), Expect = 1e-06
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L + NN + + L+ L L TL+L N+I + I L L L L LS N+I
Sbjct: 134 ESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISD--IV-PLAGLTKLQNLYLSKNHISD 189
Query: 84 IPDALENAKR 93
+ AL K
Sbjct: 190 L-RALAGLKN 198
Score = 44.7 bits (105), Expect = 2e-05
Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
V+ ++++F NL+ + + V L + + ++++IK
Sbjct: 2 GETITVSTPIKQIFP-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKS 57
Query: 84 I 84
+
Sbjct: 58 V 58
Score = 44.3 bits (104), Expect = 3e-05
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIK 82
++ ++ EL + + + IK+ GI +L ++T L L+ N +
Sbjct: 24 IKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQ----YLPNVTKLFLNGNKLT 78
Query: 83 QIP 85
I
Sbjct: 79 DIK 81
Score = 43.2 bits (101), Expect = 5e-05
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ LS+ +N + + L L L+ L L N I + + L L++L L+L
Sbjct: 156 DTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLN 211
Query: 84 IP 85
P
Sbjct: 212 KP 213
Score = 35.1 bits (80), Expect = 0.020
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
++L + N++ L L L+ L L L + N I +L T+ + ++
Sbjct: 178 QNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPIN-HQSNLVVPNTVKNTDGSLVT 235
Query: 84 IP 85
Sbjct: 236 PE 237
Score = 27.0 bits (59), Expect = 7.6
Identities = 4/43 (9%), Positives = 10/43 (23%), Gaps = 9/43 (20%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLT---TLDLSHNNIKQIP 85
+ IK +F + +L ++
Sbjct: 1 MGETITVSTPIK------QIFPDDAFAETIKDNLKKKSVTDAV 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 49.1 bits (118), Expect = 5e-07
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+L I N + + L L LR L L + I S I L +L + +L+L N+
Sbjct: 91 TNLYIGTNKITDI-SALQNLTNLRELYLNEDNI--SDIS-PLANLTKMYSLNLGANHNLS 146
Query: 84 IPDALEN 90
L N
Sbjct: 147 DLSPLSN 153
Score = 47.5 bits (114), Expect = 2e-06
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ L++ +N + + L L L +L L N++ N + L +LTTL LS N+I
Sbjct: 268 KMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITD 325
Query: 84 IP 85
I
Sbjct: 326 IR 327
Score = 47.2 bits (113), Expect = 2e-06
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
G L+ + + ++F +L L+ + + V LE +T L ++
Sbjct: 1 GAAT-LATLPAPINQIF-PDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEK 55
Query: 81 IKQIPD 86
+ I
Sbjct: 56 VASIQG 61
Score = 47.2 bits (113), Expect = 2e-06
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+L++ + ++ + + L L +L+L YN+I I L L L N I
Sbjct: 158 NYLTVTESKVKDV-TPIANLTDLYSLSLNYNQI--EDIS-PLASLTSLHYFTAYVNQITD 213
Query: 84 IP 85
I
Sbjct: 214 IT 215
Score = 46.8 bits (112), Expect = 3e-06
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E+L++ N + + L+ L L L + NKI + L +L +L L L+ +NI
Sbjct: 69 EYLNLNGNQITDI-SPLSNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNISD 124
Query: 84 IP 85
I
Sbjct: 125 IS 126
Score = 46.8 bits (112), Expect = 3e-06
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L++ N+ L+ + L L + +K+ + + +L DL +L L++N I+
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV--KDVT-PIANLTDLYSLSLNYNQIED 191
Query: 84 IP 85
I
Sbjct: 192 IS 193
Score = 46.0 bits (110), Expect = 5e-06
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ + N + + + + L +L + NKI + + L +L LT L++ N I
Sbjct: 202 HYFTAYVNQITDI-TPVANMTRLNSLKIGNNKI--TDLS-PLANLSQLTWLEIGTNQISD 257
Query: 84 IPDALEN 90
I A+++
Sbjct: 258 IN-AVKD 263
Score = 45.6 bits (109), Expect = 8e-06
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L I NN + L L L L L + N+I S I + L L L++ N I
Sbjct: 224 NSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI--SDINA-VKDLTKLKMLNVGSNQISD 279
Query: 84 IP 85
I
Sbjct: 280 IS 281
Score = 45.2 bits (108), Expect = 1e-05
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ ++ + EL+ + L + K+ + I + +L +L L+L+ N I
Sbjct: 25 IRAVLQKASVTDV-VTQEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD 80
Query: 84 IP 85
I
Sbjct: 81 IS 82
Score = 44.5 bits (106), Expect = 2e-05
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 24 EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
L + + + LT L+ LNL N+I + I L +L LT L + N I
Sbjct: 47 TKLVVAGEKVASIQGIEYLTNLE---YLNLNGNQI--TDIS-PLSNLVKLTNLYIGTNKI 100
Query: 82 KQIP 85
I
Sbjct: 101 TDIS 104
Score = 44.1 bits (105), Expect = 2e-05
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
L + NN L + L L TL L N I + I L L + + D ++ IK
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI--TDIR-PLASLSKMDSADFANQVIK 346
Query: 83 Q 83
+
Sbjct: 347 K 347
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 49.2 bits (118), Expect = 6e-07
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ LS+ N L+ + G L L L L+L N+I S + L L LT L L N I
Sbjct: 224 DELSLNGNQLKDI-GTLASLTNLTDLDLANNQI--SNLA-PLSGLTKLTELKLGANQISN 279
Query: 84 IPD 86
I
Sbjct: 280 ISP 282
Score = 48.0 bits (115), Expect = 1e-06
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L NN + + L L L L+L N++K+ L L +LT LDL++N I
Sbjct: 202 ESLIATNNQISDITP-LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN 257
Query: 84 IPD 86
+
Sbjct: 258 LAP 260
Score = 47.7 bits (114), Expect = 2e-06
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ + NN + + L L L L L N+I + I L +L +L L+LS N I
Sbjct: 93 VDILMNNNQIADIT-PLANLTNLTGLTLFNNQI--TDID-PLKNLTNLNRLELSSNTISD 148
Query: 84 IP 85
I
Sbjct: 149 IS 150
Score = 46.9 bits (112), Expect = 3e-06
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+L++ NN+ + ++ L L+ L NK+ + L +L ++ L HN I
Sbjct: 312 TYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQISD 367
Query: 84 IP 85
+
Sbjct: 368 LT 369
Score = 46.5 bits (111), Expect = 4e-06
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L ++ + G + L L +N N++ + I L +L L + +++N I
Sbjct: 49 TTLQADRLGIKSIDG-VEYLNNLTQINFSNNQL--TDIT-PLKNLTKLVDILMNNNQIAD 104
Query: 84 IPD 86
I
Sbjct: 105 ITP 107
Score = 46.1 bits (110), Expect = 6e-06
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + NN + L L+ L L L L N+I S I L L LT L+L+ N ++
Sbjct: 246 TDLDLANNQISNLAP-LSGLTKLTELKLGANQI--SNIS-PLAGLTALTNLELNENQLED 301
Query: 84 IP 85
I
Sbjct: 302 IS 303
Score = 46.1 bits (110), Expect = 6e-06
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+L + N LE + ++ L+ L L L +N I S I + L L L +N +
Sbjct: 290 TNLELNENQLEDI-SPISNLKNLTYLTLYFNNI--SDIS-PVSSLTKLQRLFFYNNKVSD 345
Query: 84 IP 85
+
Sbjct: 346 VS 347
Score = 44.6 bits (106), Expect = 2e-05
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ N+ T+L + TL IK+ + +L +LT ++ S+N +
Sbjct: 27 MKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTD 82
Query: 84 IP 85
I
Sbjct: 83 IT 84
Score = 43.0 bits (102), Expect = 5e-05
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ L NN + + L L + L+ +N+I S + L +L +T L L+
Sbjct: 334 QRLFFYNNKVSDV-SSLANLTNINWLSAGHNQI--SDLT-PLANLTRITQLGLNDQAWTN 389
Query: 84 IP 85
P
Sbjct: 390 AP 391
Score = 42.6 bits (101), Expect = 8e-05
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
N + L L L L L++ NK+ + L L +L +L ++N I I
Sbjct: 164 GNQVTDLK-PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDIT 215
Score = 41.5 bits (98), Expect = 2e-04
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
+ + ++F T L L + + V L+ +TTL IK I
Sbjct: 11 DTPINQIFT-DTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSID 62
Score = 39.9 bits (94), Expect = 6e-04
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L++ NN + + L L L L L N I + L L L L +
Sbjct: 115 TGLTLFNNQITDID-PLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQVTDL 170
Query: 84 IP 85
P
Sbjct: 171 KP 172
Score = 33.0 bits (76), Expect = 0.084
Identities = 7/62 (11%), Positives = 14/62 (22%), Gaps = 2/62 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + + + + N N P + T D++ N
Sbjct: 378 TQLGLNDQAWTNA--PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY 435
Query: 84 IP 85
Sbjct: 436 TN 437
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 48.4 bits (115), Expect = 9e-07
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 24 EHLSIVNNNLEKLFGE----LTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
+ L++ N +E G L+ L+L +N ++++ L +L+LS
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263
Query: 80 NIKQIPDAL 88
+KQ+P L
Sbjct: 264 GLKQVPKGL 272
Score = 46.4 bits (110), Expect = 3e-06
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 24 EHLSIVNNNLEKLFGELT--ELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
+ L + +N+L G + L +LNL + + +P L L+ LDLS+N +
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--KQVPKGLPA--KLSVLDLSYNRL 286
Query: 82 KQIPDALE 89
+ P E
Sbjct: 287 DRNPSPDE 294
Score = 42.6 bits (100), Expect = 7e-05
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNS---GIPVDLF-HLEDLTTLDLSHN 79
L++ N + L ELQ L+ I + + L+TLDLS N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183
Query: 80 NI 81
Sbjct: 184 PE 185
Score = 41.0 bits (96), Expect = 2e-04
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
L++ L+++ L L L+L YN++ P L + L L N
Sbjct: 256 NSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRL--DRNPSPD-ELPQVGNLSLKGNPF 308
Score = 36.8 bits (85), Expect = 0.005
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHN 79
+ LSI + ++ L TL+L N + L L L +
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211
Query: 80 NIKQIPD 86
++
Sbjct: 212 GMETPSG 218
Score = 31.0 bits (70), Expect = 0.32
Identities = 8/71 (11%), Positives = 20/71 (28%), Gaps = 6/71 (8%)
Query: 24 EHLSIVNNNL------EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLS 77
+ L++ N + L +L L N+ + + + L L ++
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 78 HNNIKQIPDAL 88
+
Sbjct: 158 QAHSLNFSCEQ 168
Score = 28.7 bits (64), Expect = 2.2
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 16 ESVTIGLTEHLSIV---NNNLEKLFGELTELQCLRTLNLRYNKIKNS 59
+ V GL LS++ N L++ EL + L+L+ N +S
Sbjct: 266 KQVPKGLPAKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLDS 311
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo
sapiens}
Length = 220
Score = 47.3 bits (113), Expect = 1e-06
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 23 TEHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
T L + NN L G +L LR +N NKI + I F + + L+ N
Sbjct: 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSN 91
Query: 80 NIKQIP 85
++ +
Sbjct: 92 RLENVQ 97
Score = 47.3 bits (113), Expect = 1e-06
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
++ NN + + F + + + L N+++N + +F LE L TL L
Sbjct: 60 RKINFSNNKITDIEEGAFEGASGVN---EILLTSNRLEN--VQHKMFKGLESLKTLMLRS 114
Query: 79 NNIKQIPD 86
N I + +
Sbjct: 115 NRITCVGN 122
Score = 47.0 bits (112), Expect = 2e-06
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 18/87 (20%)
Query: 5 EPGTFCMASKSESVTIGLTEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSG 60
E G F AS + E + + +N LE + F L L+ TL LR N+I
Sbjct: 73 EEGAFEGASG-------VNE-ILLTSNRLENVQHKMFKGLESLK---TLMLRSNRITC-- 119
Query: 61 IPVDLF-HLEDLTTLDLSHNNIKQIPD 86
+ D F L + L L N I +
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVAP 146
Score = 35.0 bits (81), Expect = 0.013
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 47 RTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQIPD 86
L L N+ +F L L ++ S+N I I +
Sbjct: 35 AELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEE 74
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 48.8 bits (117), Expect = 1e-06
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 30 NNNLEKLFG----ELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNIK-Q 83
N L G E+ + L LNL +N I SG IP ++ L L LDLS N + +
Sbjct: 641 YNMLS---GYIPKEIGSMPYLFILNLGHNDI--SGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 84 IPDALEN 90
IP A+
Sbjct: 696 IPQAMSA 702
Score = 48.0 bits (115), Expect = 1e-06
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 24 EHLSIVNNNLE-KLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNI 81
L + N LE ++ EL ++ L TL L +N + +G IP L + +L + LS+N +
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--TGEIPSGLSNCTNLNWISLSNNRL 502
Query: 82 K-QIPDALEN 90
+IP +
Sbjct: 503 TGEIPKWIGR 512
Score = 47.2 bits (113), Expect = 3e-06
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 24 EHLSIVNNNLE-KLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNI 81
L + N L + L L LR L L N + G IP +L +++ L TL L N++
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML--EGEIPQELMYVKTLETLILDFNDL 478
Query: 82 K-QIPDALEN 90
+IP L N
Sbjct: 479 TGEIPSGLSN 488
Score = 46.8 bits (112), Expect = 3e-06
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK- 82
E L + +NN L + L+ L++ NK+ + + +L L++S N
Sbjct: 203 EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVG 261
Query: 83 QIPDAL 88
IP
Sbjct: 262 PIPPLP 267
Score = 46.1 bits (110), Expect = 6e-06
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 24 EHLSIVNNNLE-KLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNI 81
+I + + L++ YN + SG IP ++ + L L+L HN+I
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML--SGYIPKEIGSMPYLFILNLGHNDI 668
Query: 82 K-QIPDALEN 90
IPD + +
Sbjct: 669 SGSIPDEVGD 678
Score = 44.9 bits (107), Expect = 2e-05
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 24 EHLSIVNNNLE----KLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSH 78
+S+ NN L K G L L L L N SG IP +L L LDL+
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLA---ILKLSNNSF--SGNIPAELGDCRSLIWLDLNT 547
Query: 79 NNIK-QIPDALEN 90
N IP A+
Sbjct: 548 NLFNGTIPAAMFK 560
Score = 44.5 bits (106), Expect = 2e-05
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 24 EHLSIVNNNLE-KLFGELTELQCLRTLNLRYNKIKNSG-IPVD-LFHLEDLTTLDLSHNN 80
L + N+ + L +L L N SG +P+D L + L LDLS N
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF--SGELPMDTLLKMRGLKVLDLSFNE 354
Query: 81 IK-QIPDALEN 90
++P++L N
Sbjct: 355 FSGELPESLTN 365
Score = 44.1 bits (105), Expect = 3e-05
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH 78
++LS+ N + L G L L+L N +P L +L LS
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLT---GLDLSGNHF-YGAVPPFFGSCSLLESLALSS 327
Query: 79 NNI 81
NN
Sbjct: 328 NNF 330
Score = 43.4 bits (103), Expect = 5e-05
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 24 EHLSIVNNNLE-KLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
+HL I N L ++ L+ LN+ N+ IP L+ L L L+ N
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQF-VGPIP--PLPLKSLQYLSLAENKFT 282
Query: 83 -QIPDALEN 90
+IPD L
Sbjct: 283 GEIPDFLSG 291
Score = 43.0 bits (102), Expect = 7e-05
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHL-EDLTTLDL 76
E L++ +NN ++ L+ L+L +N+ SG +P L +L L TLDL
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLK---VLDLSFNEF--SGELPESLTNLSASLLTLDL 375
Query: 77 SHNNIK-QIPDALENAKRT 94
S NN I L +
Sbjct: 376 SSNNFSGPILPNLCQNPKN 394
Score = 41.8 bits (99), Expect = 1e-04
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 24 EHLSIVNNNLE-KLFGEL--TELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHN 79
L + +NN + L L+ L L+ N +G IP L + +L +L LS N
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF--TGKIPPTLSNCSELVSLHLSFN 428
Query: 80 NIK-QIPDALEN 90
+ IP +L +
Sbjct: 429 YLSGTIPSSLGS 440
Score = 41.8 bits (99), Expect = 2e-04
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 24 EHLSIVNNNLEKLF---GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
L + N+L L L+ LN+ N + G L L LDLS N+
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162
Query: 81 I-KQIPDAL 88
I
Sbjct: 163 ISGANVVGW 171
Score = 40.7 bits (96), Expect = 4e-04
Identities = 7/74 (9%), Positives = 18/74 (24%), Gaps = 2/74 (2%)
Query: 19 TIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLS 77
+ N K + + + + N ++ G L L +++
Sbjct: 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616
Query: 78 HNNIK-QIPDALEN 90
+N
Sbjct: 617 SRVYGGHTSPTFDN 630
Score = 40.3 bits (95), Expect = 5e-04
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIP--VDLFHLEDLTTLDLSHNNI 81
E L + N+++ L +L+L N + + + L L L++S N +
Sbjct: 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTL 138
Score = 38.7 bits (91), Expect = 0.002
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 30 NNNLE----KLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNIK-Q 83
+N++ G+L L L+L NK+ G IP + L LT +DLS+NN+
Sbjct: 665 HNDISGSIPDEVGDLRGLN---ILDLSSNKL--DGRIPQAMSALTMLTEIDLSNNNLSGP 719
Query: 84 IPD 86
IP+
Sbjct: 720 IPE 722
Score = 38.4 bits (90), Expect = 0.002
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 24 EHLSIVNNNLE----KLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
E L + N++ + L+ L + NKI + + + +L LD+S N
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI-SGDVD--VSRCVNLEFLDVSSN 210
Query: 80 NIK-QIP 85
N IP
Sbjct: 211 NFSTGIP 217
Score = 30.6 bits (70), Expect = 0.62
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 46 LRTLNLRYNKIKNSG--IPVDLFHLEDLTTLDLSHNNIK-QIPD 86
+ +++L + + L L L +L LS+++I +
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG 95
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
c.10.2.7
Length = 347
Score = 47.8 bits (113), Expect = 1e-06
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 24 EHLSIVNNN-LEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
L I N L+ L L EL R L + + ++ + D F L+ L+LS
Sbjct: 34 TELYIENQQHLQHLELRDLRGLGEL---RNLTIVKSGLRF--VAPDAFHFTPRLSRLNLS 88
Query: 78 HNNIKQIP 85
N ++ +
Sbjct: 89 FNALESLS 96
Score = 39.0 bits (90), Expect = 0.001
Identities = 7/66 (10%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNK-IKNSGIPVDLF-HLEDLTTLDLSHNN 80
+ L + L + L L + + +++ + + L +L L + +
Sbjct: 10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQH--LELRDLRGLGELRNLTIVKSG 67
Query: 81 IKQIPD 86
++ +
Sbjct: 68 LRFVAP 73
Score = 33.9 bits (77), Expect = 0.044
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 45 CLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN-IKQIPD 86
+ LR + L E+LT L + + ++ +
Sbjct: 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLEL 49
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 46.9 bits (112), Expect = 2e-06
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + NN L L L+ L L++R NK+K+ I L L L LDL N I
Sbjct: 109 SRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITN 164
Query: 84 IPD 86
Sbjct: 165 TGG 167
Score = 45.8 bits (109), Expect = 5e-06
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
++ + N+N++ L G + L+ L+L +N+I + + L L L L ++ N +K
Sbjct: 44 QNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISD--LS-PLKDLTKLEELSVNRNRLKN 99
Query: 84 IP 85
+
Sbjct: 100 LN 101
Score = 43.5 bits (103), Expect = 2e-05
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
++ ++ L EL ++ N + I++ + + +L L LSHN I
Sbjct: 22 VKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD 77
Query: 84 IPDALEN 90
+ L++
Sbjct: 78 L-SPLKD 83
Score = 43.5 bits (103), Expect = 3e-05
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E LS+ N L+ L CL L L N++++ L HL++L L + +N +K
Sbjct: 88 EELSVNRNRLKNL--NGIPSACLSRLFLDNNELRD---TDSLIHLKNLEILSIRNNKLKS 142
Query: 84 IPD 86
I
Sbjct: 143 IVM 145
Score = 43.5 bits (103), Expect = 3e-05
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E LSI NN L+ + L L L L+L N+I N+G L L+ + +DL+
Sbjct: 131 EILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNTG---GLTRLKKVNWIDLTGQKCVN 186
Query: 84 IP 85
P
Sbjct: 187 EP 188
Score = 41.2 bits (97), Expect = 2e-04
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
+ ++F L NL + + V L + + ++NI+ +
Sbjct: 6 PTPINQVFP-DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQSL 56
Score = 32.7 bits (75), Expect = 0.088
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
E L + N + G LT L+ + ++L K N + + +L + +
Sbjct: 153 EVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE----PVKYQPELYITNTVKDP 204
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 47.4 bits (113), Expect = 2e-06
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L+ NN+ KL +L + L L+ NK+ +D+ L LT D S N + +
Sbjct: 194 NRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE----IDVTPLTQLTYFDCSVNPLTE 247
Query: 84 IPD 86
+
Sbjct: 248 LDV 250
Score = 47.0 bits (112), Expect = 3e-06
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L N+++ + G + +L L L N I +DL +LT L N +
Sbjct: 45 TSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITT----LDLSQNTNLTYLACDSNKLTN 99
Query: 84 IP 85
+
Sbjct: 100 LD 101
Score = 45.4 bits (108), Expect = 1e-05
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + +L +L++ L L L ++ +D+ H L +L + +I+
Sbjct: 300 YLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTE----LDVSHNTKLKSLSCVNAHIQD 353
Query: 84 IP 85
Sbjct: 354 FS 355
Score = 44.7 bits (106), Expect = 2e-05
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+L+ +N L L ++T L L LN NK+ +D+ LT L+ + N + +
Sbjct: 88 TYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTK----LDVSQNPLLTYLNCARNTLTE 141
Query: 84 IP 85
I
Sbjct: 142 ID 143
Score = 44.3 bits (105), Expect = 2e-05
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L +N L ++ ++T L L + N + +D+ L LTTL ++ +
Sbjct: 215 TFLDCSSNKLTEI--DVTPLTQLTYFDCSVNPLTE----LDVSTLSKLTTLHCIQTDLLE 268
Query: 84 IP 85
I
Sbjct: 269 ID 270
Score = 43.1 bits (102), Expect = 6e-05
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L N ++T L TL+ +NKI +D+ + L L+ NNI +
Sbjct: 151 TELDCHLNKKITK-LDVTPQTQLTTLDCSFNKITE----LDVSQNKLLNRLNCDTNNITK 205
Query: 84 IP 85
+
Sbjct: 206 LD 207
Score = 43.1 bits (102), Expect = 6e-05
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+L+ N L ++ +++ L L+ NK +D+ LTTLD S N I +
Sbjct: 130 TYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITK---LDVTPQTQLTTLDCSFNKITE 184
Query: 84 IP 85
+
Sbjct: 185 LD 186
Score = 42.4 bits (100), Expect = 8e-05
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+L+ N L KL ++++ L LN N + +D+ H LT LD N
Sbjct: 109 TYLNCDTNKLTKL--DVSQNPLLTYLNCARNTLTE----IDVSHNTQLTELDCHLNKKIT 162
Query: 84 IPDALENAK 92
D +
Sbjct: 163 KLDVTPQTQ 171
Score = 42.4 bits (100), Expect = 9e-05
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ K ++T L L+ + I +DL L L L++ + +
Sbjct: 278 IYFQAEGCRKIK-ELDVTHNTQLYLLDCQAAGITE----LDLSQNPKLVYLYLNNTELTE 332
Query: 84 IP 85
+
Sbjct: 333 LD 334
Score = 42.4 bits (100), Expect = 1e-04
Identities = 18/142 (12%), Positives = 39/142 (27%), Gaps = 9/142 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+L + N L +L +++ L++L+ I++ + + L +
Sbjct: 321 VYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQD--FS-SVGKIPALNNNFEAEGQTIT 375
Query: 84 IPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISY 143
+P + N N + + + E LS N ++Y
Sbjct: 376 MPKETLTNNSLTIAVSPDLLDQFG--NPMNIEPGDGGVYDQATNTITWENLSTDNPAVTY 433
Query: 144 --IEGGRTASGFFTVEDTVYTT 163
G T
Sbjct: 434 TFTSENGAIVGTVTTPFEAPQP 455
Score = 40.1 bits (94), Expect = 5e-04
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
+ + + +L L +L+ + I + + + L LT L + NNI +
Sbjct: 26 AAFEMQATDTI--SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTLD 80
Score = 38.1 bits (89), Expect = 0.002
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + +L ++ +LT L +D+ H L LD I +
Sbjct: 257 TTLHCIQTDLLEI--DLTHNTQLIYFQAEGC---RKIKELDVTHNTQLYLLDCQAAGITE 311
Query: 84 IP 85
+
Sbjct: 312 LD 313
Score = 35.4 bits (82), Expect = 0.014
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ N L +L +++ L L TL+ + +DL H L +
Sbjct: 236 TYFDCSVNPLTEL--DVSTLSKLTTLHCIQTDLLE----IDLTHNTQLIYFQAEGCRKIK 289
Query: 84 IPD 86
D
Sbjct: 290 ELD 292
Score = 30.8 bits (70), Expect = 0.52
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
+ +++ + + L LT+LD +++I +
Sbjct: 20 FASEVAAAFEMQATD-TISEEQLATLTSLDCHNSSITDMTG 59
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 47.7 bits (113), Expect = 2e-06
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 22/84 (26%)
Query: 24 EHLSIVNNNLEKL---FGELTELQC--------------LRTLNLRYNKIKNSGIPVDLF 66
E+L +N L L L L L +N N++ +P
Sbjct: 103 EYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM--LPELPT 160
Query: 67 HLEDLTTLDLSHNNIKQIPDALEN 90
LE L + +N + +P+ E+
Sbjct: 161 SLE---VLSVRNNQLTFLPELPES 181
Score = 46.1 bits (109), Expect = 7e-06
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTT----LDLSHN 79
E LS+ NN L L L+ L++ N +++ +P N
Sbjct: 163 EVLSVRNNQLTFLPELPESLE---ALDVSTNLLES--LPAVPVRNHHSEETEIFFRCREN 217
Query: 80 NIKQIPDALENAKR 93
I IP+ + +
Sbjct: 218 RITHIPENILSLDP 231
Score = 45.3 bits (107), Expect = 1e-05
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
L E+++ NN L L L L++R N++ + +P +L E L LD+S N
Sbjct: 139 PALLEYINADNNQLTML---PELPTSLEVLSVRNNQL--TFLP-EL--PESLEALDVSTN 190
Query: 80 NIKQIPDALEN 90
++ +P
Sbjct: 191 LLESLPAVPVR 201
Score = 45.0 bits (106), Expect = 2e-05
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + NL L L + L + N + + +P L LD N +
Sbjct: 62 SELQLNRLNLSSLPDNL--PPQITVLEITQNALIS--LPELP---ASLEYLDACDNRLST 114
Query: 84 IPDALENAKR 93
+P+ + K
Sbjct: 115 LPELPASLKH 124
Score = 37.6 bits (87), Expect = 0.003
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 11 MASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED 70
M + + ++ + ++ F + + N+ S + +
Sbjct: 4 MLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAV-SLLK--ECLINQ 60
Query: 71 LTTLDLSHNNIKQIPDAL 88
+ L L+ N+ +PD L
Sbjct: 61 FSELQLNRLNLSSLPDNL 78
Score = 32.6 bits (74), Expect = 0.15
Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 7/117 (5%)
Query: 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
N + + + L T+ L N + S L T H
Sbjct: 208 TEIFFRCRENRITHIPENILSLDPTCTIILEDNPL--SSRIR--ESLSQQTAQPDYHGPR 263
Query: 82 KQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFN 138
+ + T A +A N ++ ++ E+ + F + +
Sbjct: 264 IYFSM-SDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEH--ANTFSAFLD 317
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 47.0 bits (112), Expect = 2e-06
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 21 GLTE--HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
GL E L + N L+ L +L+ L+L N + + +P L LE+L T
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLE---KLSLANNNL--TELPAGLLNGLENLDT 176
Query: 74 LDLSHNNIKQIPD-ALENAKRTKATLD 99
L L N++ IP + A L
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLH 203
Score = 45.5 bits (108), Expect = 7e-06
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
T L + N L L L LNL ++ + VD L L TLDLSHN +
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQL 89
Query: 82 KQIPDALEN 90
+ +P +
Sbjct: 90 QSLPLLGQT 98
Score = 43.2 bits (102), Expect = 4e-05
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 24 EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
L++ L KL G L L TL+L +N++++ +P+ L LT LD+S N +
Sbjct: 58 TQLNLDRAELTKLQVDGTLPVLG---TLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRL 112
Query: 82 KQIP 85
+P
Sbjct: 113 TSLP 116
Score = 40.1 bits (94), Expect = 4e-04
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
E LS+ NNNL +L L L TL L+ N + IP F L L N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLD---TLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205
Score = 28.9 bits (65), Expect = 1.5
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 8/42 (19%)
Query: 46 LRTLNLRYNKIKN--SGIPVDLFHLEDLTTLDLSHNNIKQIP 85
+N + +P D T L LS N +
Sbjct: 12 HLEVNCDKRNLTALPPDLPKDT------TILHLSENLLYTFS 47
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 47.0 bits (112), Expect = 2e-06
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + N L+ + + LQ ++TL+L +I + + L L +L L L N I
Sbjct: 88 TELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITD--VT-PLAGLSNLQVLYLDLNQITN 143
Query: 84 IP 85
I
Sbjct: 144 IS 145
Score = 45.4 bits (108), Expect = 8e-06
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ L + N + + L L L+ L++ ++ + + L +L LTTL N I
Sbjct: 132 QVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSD--LT-PLANLSKLTTLKADDNKISD 187
Query: 84 IPD 86
I
Sbjct: 188 ISP 190
Score = 45.1 bits (107), Expect = 9e-06
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
LS + + G + L L L L+ N+I + + L +L +T L+LS N +K
Sbjct: 44 TTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITD--LA-PLKNLTKITELELSGNPLKN 99
Query: 84 IP 85
+
Sbjct: 100 VS 101
Score = 44.7 bits (106), Expect = 1e-05
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
++LSI N + L L L L TL NKI + I L L +L + L +N I
Sbjct: 154 QYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISD--IS-PLASLPNLIEVHLKNNQISD 209
Query: 84 IP 85
+
Sbjct: 210 VS 211
Score = 42.0 bits (99), Expect = 9e-05
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L +N + + L L L ++L+ N+I + + L + +L + L++ I
Sbjct: 176 TTLKADDNKISDI-SPLASLPNLIEVHLKNNQISD--VSP-LANTSNLFIVTLTNQTITN 231
Query: 84 IP 85
P
Sbjct: 232 QP 233
Score = 37.4 bits (87), Expect = 0.003
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
+ +F L + + + + V L+ +TTL + I
Sbjct: 6 PTAINVIFP-DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTIE 57
Score = 32.4 bits (74), Expect = 0.13
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ + NN + + L L + L I N +F+ +L ++
Sbjct: 198 IEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITN----QPVFYNNNLVVPNVVKGPSGA 252
Query: 84 I 84
Sbjct: 253 P 253
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 46.6 bits (111), Expect = 3e-06
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ LS+ +N + + G L L L +L L NKI + I V L L L TL L N I
Sbjct: 115 KSLSLEHNGISDING-LVHLPQLESLYLGNNKITD--ITV-LSRLTKLDTLSLEDNQISD 170
Query: 84 IPD 86
I
Sbjct: 171 IVP 173
Score = 46.2 bits (110), Expect = 3e-06
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + N L + L L+ L L L NK+K+ L L+ L +L L HN I
Sbjct: 71 TKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL---SSLKDLKKLKSLSLEHNGISD 126
Query: 84 IPDALEN 90
I + L +
Sbjct: 127 I-NGLVH 132
Score = 43.9 bits (104), Expect = 2e-05
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+ LS+ +N + + L L L+ L L N I + + L L++L L+L
Sbjct: 159 DTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLN 214
Query: 84 IPD 86
P
Sbjct: 215 KPI 217
Score = 42.0 bits (99), Expect = 8e-05
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
++ ++ EL + + + IK+ + + +L ++T L L+ N +
Sbjct: 27 IKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD 82
Query: 84 IPD 86
I
Sbjct: 83 IKP 85
Score = 42.0 bits (99), Expect = 1e-04
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
L V ++++F NL+ + + V L + + ++++I
Sbjct: 3 LGSETITVPTPIKQIFS-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDI 58
Query: 82 KQIP 85
K +
Sbjct: 59 KSVQ 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 46.1 bits (110), Expect = 4e-06
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 21 GLT--EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
LT L + +N L+ L F EL L+ TL + NK++ +P+ +F L +L
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLE---TLWVTDNKLQA--LPIGVFDQLVNLAE 113
Query: 74 LDLSHNNIKQIPD 86
L L N +K +P
Sbjct: 114 LRLDRNQLKSLPP 126
Score = 44.2 bits (105), Expect = 1e-05
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 21 GLTE--HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTT 73
LT+ +LS+ N L+ L F +LT L+ L L N++K +P F L +L T
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLK---ELRLYNNQLKR--VPEGAFDKLTELKT 185
Query: 74 LDLSHNNIKQIPD 86
L L +N +K++P+
Sbjct: 186 LKLDNNQLKRVPE 198
Score = 26.5 bits (59), Expect = 8.7
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 6/27 (22%)
Query: 59 SGIPVDLFHLEDLTTLDLSHNNIKQIP 85
S IP D LDL N + +P
Sbjct: 33 SNIPADT------KKLDLQSNKLSSLP 53
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 45.0 bits (107), Expect = 6e-06
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
L + N + EL+ + L ++L N+I + F ++ L TL LS+N +
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST--LSNQSFSNMTQLLTLILSYNRL 90
Query: 82 KQIPD 86
+ IP
Sbjct: 91 RCIPP 95
Score = 44.6 bits (106), Expect = 7e-06
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 26 LSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
+ + NN + L F +T+L TL L YN+++ IP F L+ L L L N+
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLL---TLILSYNRLRC--IPPRTFDGLKSLRLLSLHGND 113
Query: 81 IKQIPD 86
I +P+
Sbjct: 114 ISVVPE 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 45.0 bits (107), Expect = 6e-06
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 23 TEHLSIVNNNLEKL-----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDL 76
T L + +N L ++ FG L L L L+ N++ I + F + L L
Sbjct: 31 TTELLLNDNELGRISSDGLFGRLPHLV---KLELKRNQLTG--IEPNAFEGASHIQELQL 85
Query: 77 SHNNIKQIPD 86
N IK+I +
Sbjct: 86 GENKIKEISN 95
Score = 44.6 bits (106), Expect = 8e-06
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 24 EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
L + N L + F + +Q L L NKIK I +F L L TL+L
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQ---ELQLGENKIKE--ISNKMFLGLHQLKTLNLYD 111
Query: 79 NNIKQIPD 86
N I +
Sbjct: 112 NQISCVMP 119
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 44.5 bits (106), Expect = 6e-06
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
T+ L + +N + KL F LT+L L+L N++ +P +F L LT L L+
Sbjct: 32 TQVLYLYDNQITKLEPGVFDRLTQLT---RLDLDNNQLTV--LPAGVFDKLTQLTQLSLN 86
Query: 78 HNNIKQIPD 86
N +K IP
Sbjct: 87 DNQLKSIPR 95
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 45.6 bits (109), Expect = 7e-06
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 24 EHLSIVNNNLEKLFG----ELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSH 78
+L I + N+ G L++++ L TL+ YN + SG +P + L +L +
Sbjct: 104 HYLYITHTNVS---GAIPDFLSQIKTLVTLDFSYNAL--SGTLPPSISSLPNLVGITFDG 158
Query: 79 NNIK-QIPDALEN 90
N I IPD+ +
Sbjct: 159 NRISGAIPDSYGS 171
Score = 44.4 bits (106), Expect = 2e-05
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNIK 82
+ + + N+L G++ + L L+LR N+I G +P L L+ L +L++S NN+
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI--YGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 83 -QIP 85
+IP
Sbjct: 282 GEIP 285
Score = 42.1 bits (100), Expect = 1e-04
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 12/71 (16%)
Query: 21 GLTEHLSIVNNNLE----KLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLD 75
L ++I N L F L L ++L N + G V ++ +
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLN----LAFVDLSRNML--EGDASVLFGSDKNTQKIH 227
Query: 76 LSHNNIK-QIP 85
L+ N++ +
Sbjct: 228 LAKNSLAFDLG 238
Score = 39.4 bits (93), Expect = 7e-04
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 25 HLSIVNNNLE---KLFGELTELQCLRTLNLR-YNKIKNSG-IPVDLFHLEDLTTLDLSHN 79
+L + NL + L L L L + N + G IP + L L L ++H
Sbjct: 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--VGPIPPAIAKLTQLHYLYITHT 111
Query: 80 NIK-QIPDALENAKR 93
N+ IPD L K
Sbjct: 112 NVSGAIPDFLSQIKT 126
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR,
leucine-rich repeat, LRR, system; 2.10A {Petromyzon
marinus}
Length = 174
Score = 44.2 bits (105), Expect = 8e-06
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
+ L + NN + KL F L LQ L NK+ IP +F L LT LDL+
Sbjct: 35 KQRLWLNNNQITKLEPGVFDHLVNLQ---QLYFNSNKLTA--IPTGVFDKLTQLTQLDLN 89
Query: 78 HNNIKQIPD 86
N++K IP
Sbjct: 90 DNHLKSIPR 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 1e-05
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 1 MVGFEPGTFCMASKSESV-----TIG--LTEHLSIVNNNLEK----LFGELTELQCLRTL 49
M+ PG + E++ +G + IVN N+E G+L L + +
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNV 1868
Query: 50 NLRYNKIKNSGIPVDLFHLEDLTTLD 75
L + K++ +D+ L+ +L+
Sbjct: 1869 -LNFIKLQK----IDIIELQKSLSLE 1889
Score = 37.3 bits (86), Expect = 0.005
Identities = 49/233 (21%), Positives = 70/233 (30%), Gaps = 64/233 (27%)
Query: 32 NLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK--------- 82
N + F E LR L Y+ + DL T +L +
Sbjct: 165 NTDDYFEE------LRDLYQTYH-----VLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 83 QIPDALENAKRT--KATLDKRACS--AIHAVNLRNFLAAECRTIREEQGDESEEFLSLFN 138
I + LEN T K L S I + L +++ + + G E S
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT-AKLL----GFTPGELRSYLK 268
Query: 139 --TGIS-------YIEGGRTASGFFTVEDTVYTTRLY---RVH-------APLHQAQASS 179
TG S I + FF T + R + P + S
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 180 IHLE--PVPVLS-ESLDPRFVFL--------LDAGLKLFI--WNGPKAKNTFV 219
+ E P P+LS +L V L AG ++ I NG K V
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN---LV 378
Score = 36.6 bits (84), Expect = 0.010
Identities = 24/164 (14%), Positives = 43/164 (26%), Gaps = 58/164 (35%)
Query: 26 LSIVNNN---LEKLFGELTELQCLRTLNLRYNKIK------NSGIPVDLFHL--EDLTTL 74
L IV NN L FG + + + Y+ + +F E T+
Sbjct: 1662 LDIVINNPVNLTIHFGG----EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 75 DLSHNNIKQIPDAL----ENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDES 130
L + + A+ + A ++ + +
Sbjct: 1718 TFRS------EKGLLSATQFTQP-----------ALTLMEK-----AAFEDLKSKGLIPA 1755
Query: 131 EEFL---SLFNTGISYIEGGRTA----SGFFTVEDTVYTTRLYR 167
+ SL G Y A + ++E V YR
Sbjct: 1756 DATFAGHSL---G-EY-----AALASLADVMSIESLVEVVF-YR 1789
Score = 32.7 bits (74), Expect = 0.13
Identities = 20/126 (15%), Positives = 31/126 (24%), Gaps = 27/126 (21%)
Query: 112 RNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTAS--GFFTVEDTVYTTRLYRVH 169
+ + + +SL N + + G S G L +
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL--------NLTLRKAK 397
Query: 170 APLHQAQASSIHLEPVPVLSESLDPRFV-F---LL---------DAGLKLFIWNGPKAK- 215
AP Q+ E S P F LL D +N +
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 216 ---NTF 218
+TF
Sbjct: 458 PVYDTF 463
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 43.0 bits (102), Expect = 2e-05
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
L + +N L+ L F +LT+L L+L N+I++ +P +F L LT L L
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLT---KLSLSQNQIQS--LPDGVFDKLTKLTILYLH 84
Query: 78 HNNIKQIPD 86
N ++ +P+
Sbjct: 85 ENKLQSLPN 93
Score = 38.8 bits (91), Expect = 6e-04
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 21 GLTE--HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
LT+ LS+ N ++ L F +LT+L L L NK+++ +P +F L L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLT---ILYLHENKLQS--LPNGVFDKLTQLKE 104
Query: 74 LDLSHNNIKQIPD 86
L L N +K +PD
Sbjct: 105 LALDTNQLKSVPD 117
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 2e-05
Identities = 34/205 (16%), Positives = 69/205 (33%), Gaps = 48/205 (23%)
Query: 16 ESVTIGLTEH-LSIVNNNLEKLFGE--LTELQCLRTLNLRYNKIKNSGIPVDLF-----H 67
S I LS++ ++ K + +L +L + K IP ++
Sbjct: 383 PSAHI--PTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIP-SIYLELKVK 438
Query: 68 LEDLTTLDLSHNNIK---QIPDALENAKRTKATLDKRACSAI--HAVNLRNFLAAECRTI 122
LE+ L H +I IP ++ LD+ S I H N+
Sbjct: 439 LENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI----------- 484
Query: 123 REEQGDESEEFLSLFNTGISYIEG-----GRTASGFFTVEDTVYTTRLYRVH----APLH 173
E + F +F ++E + ++ +T+ + Y+ + P +
Sbjct: 485 --EHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 174 QAQASSI-----HLEPVPVLSESLD 193
+ ++I +E + S+ D
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTD 566
Score = 35.6 bits (81), Expect = 0.015
Identities = 41/212 (19%), Positives = 65/212 (30%), Gaps = 44/212 (20%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED------LTTLDLSH 78
+ + L +L CL L L ++N+ + F + LTT
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL--LVLL--NVQNAKA-WNAF---NLSCKILLTTRF--- 274
Query: 79 NNIKQIPDALENAKRTKATLDKRACSAIHAVN---LRNFLAAECRTIREEQGDESEEFLS 135
KQ+ D L A T +LD + + L +L + + E + LS
Sbjct: 275 ---KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 136 LFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSI-HLEPVPVLSESLDP 194
+ S +G T + + L SS+ LEP + D
Sbjct: 332 II--AESIRDGLATWDNW-----------KHVNCDKLTTIIESSLNVLEP-AEYRKMFDR 377
Query: 195 RFVFLLDAG-----LKLFIWNGPKAKNTFVFL 221
VF A L L W + V +
Sbjct: 378 LSVFPPSAHIPTILLSLI-WFDVIKSDVMVVV 408
Score = 35.6 bits (81), Expect = 0.018
Identities = 48/293 (16%), Positives = 82/293 (27%), Gaps = 95/293 (32%)
Query: 39 ELTELQCLRTLNLRYNKIKNSGIPV---------DLFHLEDLTTLDLSHNNIKQI---PD 86
E E Q +Y I + V D ++D+ LS I I D
Sbjct: 10 ETGEHQ------YQYKDI----LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 87 ALENAKRTKATL-DKRACSAIHAVN--LR---NFLAAECRTIREEQGDESEEFLS----L 136
A+ R TL K+ V LR FL + +T + + + ++ L
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 137 FNTGISYIEGGRTASGFFTVEDTVYTTR--LYR--------VH----------------- 169
+N + A + R L +
Sbjct: 120 YNDNQVF------AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 170 APLHQAQASSIH-------------LEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKN 216
+ I LE + L +DP + D N +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS-----NIKLRIH 228
Query: 217 TFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLL 269
+ + A L+ + + +N + LL+ + N KA N F ++L
Sbjct: 229 S----IQAELRRLLKS-KPYENCLLVLLN------VQN-AKAWNAFNLSCKIL 269
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 43.7 bits (103), Expect = 3e-05
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
L V L + F +L+ + + N + I D+F +L L + +
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLE---KIEISQNDVL-EVIEADVFSNLPKLHEIRIE 87
Query: 78 H-NNIKQIPD 86
NN+ I
Sbjct: 88 KANNLLYINP 97
Score = 42.1 bits (99), Expect = 1e-04
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
+ L + N ++++ Q N ++ +P D+F LD+S
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILDISRT 212
Query: 80 NIKQIPDAL 88
I +P
Sbjct: 213 RIHSLPSYG 221
Score = 41.4 bits (97), Expect = 2e-04
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 24 EHLSIVNNN-LEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
E + I N+ LE + F L +L +R N + I + F +L +L L +S
Sbjct: 57 EKIEISQNDVLEVIEADVFSNLPKLHEIRIEK--ANNLLY--INPEAFQNLPNLQYLLIS 112
Query: 78 HNNIKQIPD 86
+ IK +PD
Sbjct: 113 NTGIKHLPD 121
Score = 39.8 bits (93), Expect = 6e-04
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQIPDA 87
L K++ I F DL +++S N++ ++ +A
Sbjct: 32 AIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEA 72
Score = 39.4 bits (92), Expect = 8e-04
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 24 EHLSIVN-NNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
+ I NNL + L L+ L + IK+ +P H LD+ N
Sbjct: 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH--LPDVHKIHSLQKVLLDIQDNI 139
Query: 81 -IKQIPD 86
I I
Sbjct: 140 NIHTIER 146
Score = 32.9 bits (75), Expect = 0.11
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 47 RTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
R + +K+ IP DL + L ++ I
Sbjct: 12 RVFLCQESKVTE--IPSDLP--RNAIELRFVLTKLRVIQ 46
Score = 29.4 bits (66), Expect = 1.3
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
L I + L L L+ LR + K +P L L L L++
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNLKK----LPT-LEKLVALMEASLTYP 256
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 43.7 bits (102), Expect = 4e-05
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 164 RLYRVHAPLHQA---------QASSIHLEPVPVL--SESLDPRFVFLLDAGLKLFIWNGP 212
+Y +H +A +A+ + P P+ S + ++L+D G +LF+W G
Sbjct: 755 DVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGG 814
Query: 213 KAKNTFVFLL 222
A VF +
Sbjct: 815 DAVPALVFDV 824
Score = 28.6 bits (63), Expect = 2.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 237 KNTFVFLLDAGLKLFIWNGPKA 258
+ ++L+D G +LF+W G A
Sbjct: 795 ERYGLYLIDNGNELFLWMGGDA 816
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 41.6 bits (98), Expect = 1e-04
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 21 GLTE--HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
LT+ L + N L+ L F LT+L+ L L N++++ IP F L +L T
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLK---ELRLNTNQLQS--IPAGAFDKLTNLQT 159
Query: 74 LDLSHNNIKQIPD 86
L LS N ++ +P
Sbjct: 160 LSLSTNQLQSVPH 172
Score = 41.2 bits (97), Expect = 1e-04
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
TE L + + L L L L LNL YN++ + +F L +L TL L++N
Sbjct: 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQ 94
Query: 81 IKQIP 85
+ +P
Sbjct: 95 LASLP 99
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 40.8 bits (96), Expect = 2e-04
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 23 TEHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHN 79
+L++ N L + ELT L L L N++ +P +F L +L L L N
Sbjct: 65 VRYLALGGNKLHDISALKELTNLT---YLILTGNQL--QSLPNGVFDKLTNLKELVLVEN 119
Query: 80 NIKQIP 85
++ +P
Sbjct: 120 QLQSLP 125
Score = 38.8 bits (91), Expect = 0.001
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
+L++ +N L+ L F +LT L L+L YN++++ +P +F L L L L
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLT---ELDLSYNQLQS--LPEGVFDKLTQLKDLRLY 189
Query: 78 HNNIKQIPD 86
N +K +PD
Sbjct: 190 QNQLKSVPD 198
Score = 35.8 bits (83), Expect = 0.011
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 23 TEHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHN 79
+ + N++++ + L ++ L L NK+ + L +LT L L+ N
Sbjct: 43 IDQIIANNSDIKSVQGIQYLPNVR---YLALGGNKLHDISA----LKELTNLTYLILTGN 95
Query: 80 NIKQIPD 86
++ +P+
Sbjct: 96 QLQSLPN 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 40.7 bits (96), Expect = 3e-04
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGI----PVDLFHLEDLTTL 74
E L + + + L G + LR L L NK+ + G+ P L L TL
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261
Query: 75 DLSHNNI 81
+ I
Sbjct: 262 WIWECGI 268
Score = 40.3 bits (95), Expect = 5e-04
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTL 74
L + + ++ L L LR L+L N + ++GI + + L L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432
Query: 75 DLSHNNI-KQIPDALENAKRTKATLD 99
L +++ D L+ ++ K +L
Sbjct: 433 VLYDIYWSEEMEDRLQALEKDKPSLR 458
Score = 39.6 bits (93), Expect = 6e-04
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTL 74
E L + +L E L L + L + N I +G+ V L+D L L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204
Query: 75 DLSHNNI 81
L +
Sbjct: 205 KLESCGV 211
Score = 38.8 bits (91), Expect = 0.001
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 24 EHLSIVNNNL-EKLFGELTE-LQCLRTLNLRYNKIKNSG---IPVDLFHLEDLTTLDLSH 78
+ L I L + + EL LQ + + L + + I L L L+L
Sbjct: 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 65
Query: 79 NNI-----KQIPDALENAKRTKATLDKRACS 104
N + + L+ L + C
Sbjct: 66 NELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 96
Score = 38.4 bits (90), Expect = 0.002
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQC-LRTLNLRYNKIKNSGIPV---DLFHLEDLTTL 74
+ L++ NN++ L L + C L L L + + + L L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232
Query: 75 DLSHNNI-----KQIPDALENAKRTKATLDKRACS 104
L N + ++ L + TL C
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267
Score = 38.4 bits (90), Expect = 0.002
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTL 74
+ + + + L + + L L LNLR N++ + G+ L L+ + L
Sbjct: 31 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90
Query: 75 DLSHNNI 81
L + +
Sbjct: 91 SLQNCCL 97
Score = 38.4 bits (90), Expect = 0.002
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQC-LRTLNLRYNKIKNSG---IPVDLFHLEDLTTL 74
+ L + +N L + L L + QC L L L Y + + + L D L
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175
Query: 75 DLSHNNI-----KQIPDALENAKRTKATLDKRACS 104
+S+N+I + + L+++ L +C
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210
Score = 38.4 bits (90), Expect = 0.002
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTL 74
+ LS+ N L L L L L+ L+L N + ++G+ + L D L L
Sbjct: 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147
Query: 75 DLSHNNI 81
L + ++
Sbjct: 148 QLEYCSL 154
Score = 37.6 bits (88), Expect = 0.003
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTL 74
L I + L L + L+ L+L N++ + G + L + L +L
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318
Query: 75 DLSHNNI 81
+ +
Sbjct: 319 WVKSCSF 325
Score = 37.6 bits (88), Expect = 0.003
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 24 EHLSIVNNNLE----KLFGE--LTELQCLRTLNLRYNKIKNSGIPV---DLFHLEDLTTL 74
L++ +N L L LRTL + I G L E L L
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289
Query: 75 DLSHNNI-----KQIPDALENAKRTKATLDKRACS 104
L+ N + + + + L +L ++CS
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324
Score = 37.6 bits (88), Expect = 0.004
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQC-LRTLNLRYNKIKNSG---IPVDLFHLEDLTTL 74
L++ +N L + L C ++ L+L+ + +G + L L L L
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118
Query: 75 DLSHNNI 81
LS N +
Sbjct: 119 HLSDNLL 125
Score = 37.2 bits (87), Expect = 0.004
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTL 74
E L + + + L + + L L + N+++++G+ L L L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375
Query: 75 DLSHNNI 81
L+ ++
Sbjct: 376 WLADCDV 382
Score = 36.1 bits (84), Expect = 0.009
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 24 EHLSIVNNNLE----KLFGE-LTELQC-LRTLNLRYNKIKNSGIPV---DLFHLEDLTTL 74
L I NN LE + + L + LR L L + +S L L L
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403
Query: 75 DLSHNNI-----KQIPDALENAKRTKATLDKRACS 104
DLS+N + Q+ +++ L
Sbjct: 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438
Score = 34.6 bits (80), Expect = 0.029
Identities = 4/36 (11%), Positives = 17/36 (47%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
+++L+++ ++ ++ L L+ + L +
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL 40
Score = 33.4 bits (77), Expect = 0.067
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 24 EHLSIVNNNLE----KLFGE-LTELQC-LRTLNLRYNKIKNSG---IPVDLFHLEDLTTL 74
+ LS+ N L +L E L E C L +L ++ + L L L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346
Query: 75 DLSHNNI-----KQIPDALENAKRTKATLDKRACS 104
+S+N + +++ L L C
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 39.7 bits (93), Expect = 4e-04
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 10 CMASKSESVTIGL---TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIP 62
C + + SV G+ + L + +N + KL F L L+ L L N++ +P
Sbjct: 26 CRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLK---ELYLGSNQLGA--LP 80
Query: 63 VDLF-HLEDLTTLDLSHNNIKQIPD 86
V +F L LT LDL N + +P
Sbjct: 81 VGVFDSLTQLTVLDLGTNQLTVLPS 105
Score = 38.9 bits (91), Expect = 8e-04
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH 78
L + N L L F L L+ L + NK+ +P + L LT L L
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLK---ELFMCCNKLTE--LPRGIERLTHLTHLALDQ 144
Query: 79 NNIKQIPD 86
N +K IP
Sbjct: 145 NQLKSIPH 152
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 39.2 bits (92), Expect = 6e-04
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 NNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQI 84
+ L++L F L+++ + +R + I D L L L + + +K
Sbjct: 65 DVTLQQLESHSFYNLSKVT---HIEIRNTRNLTY-IDPDALKELPLLKFLGIFNTGLKMF 120
Query: 85 PD 86
PD
Sbjct: 121 PD 122
Score = 38.8 bits (91), Expect = 9e-04
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN-IKQIPD 86
+TL L ++ IP F L +++ + +S + ++Q+
Sbjct: 33 TQTLKLIETHLRT--IPSHAFSNLPNISRIYVSIDVTLQQLES 73
Score = 38.8 bits (91), Expect = 0.001
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNK-IKNSGIPVDLFH--LEDLTTLDLSH 78
T L + NN + G L + L NK + I D F + LD+S
Sbjct: 157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTV--IDKDAFGGVYSGPSLLDVSQ 214
Query: 79 NNIKQIP-DALEN 90
++ +P LE+
Sbjct: 215 TSVTALPSKGLEH 227
Score = 37.3 bits (87), Expect = 0.003
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH 78
H+ I N EL L+ L + +K ++ + L+++
Sbjct: 83 THIEIRNTRNLTYIDPDALKELPLLK---FLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139
Query: 79 NN-IKQIPD 86
N + IP
Sbjct: 140 NPYMTSIPV 148
Score = 26.9 bits (60), Expect = 7.3
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 70 DLTTLDLSHNNIKQIPD 86
TL L +++ IP
Sbjct: 32 STQTLKLIETHLRTIPS 48
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 38.9 bits (91), Expect = 7e-04
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
+L++ N L+ L F +LT+L+ L L N++++ +P +F L L L L
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLK---ELALNTNQLQS--LPDGVFDKLTQLKDLRLY 132
Query: 78 HNNIKQIPD 86
N +K +PD
Sbjct: 133 QNQLKSVPD 141
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 38.5 bits (90), Expect = 0.001
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 15/96 (15%)
Query: 24 EHLSIVNNNLE----KLFGE-LTELQC-LRTLNLRYNKIKNSGIPVDLFHLED----LTT 73
L++ N+L + L + + +LNLR N + + L +T+
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS 200
Query: 74 LDLSHNNI-----KQIPDALENAKRTKATLDKRACS 104
LDLS N + ++ + +L+
Sbjct: 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236
Score = 37.8 bits (88), Expect = 0.002
Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 40 LTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTLDLSHNNI-----KQIPDALEN 90
+ + +L+L N + + + + +T+L+LS N++ ++ L
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77
Query: 91 AKRTKATLD 99
+L+
Sbjct: 78 IPANVTSLN 86
Score = 35.5 bits (82), Expect = 0.014
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQC-LRTLNLRYNKIKNSGIPVDLFHLED----LTT 73
L++ N L ++L L + + L+L +N + + +T+
Sbjct: 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142
Query: 74 LDLSHNNI-----KQIPDALENAKRTKATLD 99
L+L N++ ++ L +L+
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLN 173
Score = 34.7 bits (80), Expect = 0.023
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 24 EHLSIVNNNLE----KLFGE-LTELQC-LRTLNLRYNKIKNSG---IPVDLFHLEDLTTL 74
L + N L + + + +LNL N + + + L+ L T+
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258
Query: 75 DLSHNNIKQI 84
L ++ +K +
Sbjct: 259 YLDYDIVKNM 268
Score = 27.4 bits (61), Expect = 5.3
Identities = 5/70 (7%), Positives = 21/70 (30%), Gaps = 12/70 (17%)
Query: 24 EHLSIVNNNLEKLFGE--------LTELQCLRTLNLRYNKIKNSGIPVDLFHLED----L 71
+ + + + ++ + E +Q + ++ +I S + +
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315
Query: 72 TTLDLSHNNI 81
L + +
Sbjct: 316 DVPSLLNQCL 325
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 38.4 bits (88), Expect = 0.001
Identities = 13/79 (16%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 24 EHLSIVNNNLE----KLFGELTELQCLRTLNLRYNKIKNSG---IPVDLFHLEDLTTLDL 76
+ L IV+ + ++F E L L T+++ + + G + + ++ L +++
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314
Query: 77 SHNNI-----KQIPDALEN 90
+N + K++ +L
Sbjct: 315 KYNYLSDEMKKELQKSLPM 333
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 37.7 bits (87), Expect = 0.002
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 11 MASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLE 69
+ S + V + L+ + L + L +LNL N++ + +
Sbjct: 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAP 196
Query: 70 DLTTLDLSHNNIKQI 84
+L L+LS N +K
Sbjct: 197 NLKILNLSGNELKSE 211
Score = 33.8 bits (77), Expect = 0.040
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 24 EHLSIVNNNLEKL--FGELTELQ-CLRTLNLRYNKIKNSGIPVDLFHLED--LTTLDLSH 78
L++ NN L +L + + L+ LNL N++K+ +L ++ L L L
Sbjct: 173 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER---ELDKIKGLKLEELWLDG 229
Query: 79 N 79
N
Sbjct: 230 N 230
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 36.2 bits (84), Expect = 0.009
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSG---IPVDLFHLEDLTTLD 75
L + NN L L L + L+L + + + G + L L L+
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217
Query: 76 LSHNNI 81
+++N
Sbjct: 218 VAYNGA 223
Score = 33.9 bits (78), Expect = 0.039
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 24 EHLSIVNNNLE----KLFGE-LTELQCLRTLNLRYNKIKNSGIPV---DLFHLEDLTTLD 75
HLS+++ L +L L + L+ LN+ YN ++ L L
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245
Query: 76 LSHNNI 81
L N +
Sbjct: 246 LYFNEL 251
Score = 33.9 bits (78), Expect = 0.047
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 45 CLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
L +NL ++ +G+ L L L N++
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138
Score = 33.9 bits (78), Expect = 0.051
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 25 HLSIVNNNL-----EKLFGELTELQC-LRTLNLRYNKIKNSGIPVDLFH-LED---LTTL 74
L + N+L + L L QC + TL L N + +G+ L L +T L
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV-AVLMEGLAGNTSVTHL 188
Query: 75 DLSHNNI 81
L H +
Sbjct: 189 SLLHTGL 195
Score = 33.2 bits (76), Expect = 0.087
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPV---DLFHLEDLTTLD 75
+ L++ N L E L L+L +N++ + G V E +
Sbjct: 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVV 273
Query: 76 LSHNNIKQIPD----ALENAKRTKATLDK 100
+S + + L +R + D+
Sbjct: 274 VSLTEGTAVSEYWSVILSEVQRNLNSWDR 302
Score = 32.0 bits (73), Expect = 0.17
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 24 EHLSIVNNNL--EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTLDLS 77
+ +++ + L L L R L L+ N + L +TTL LS
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS 163
Query: 78 HNNI 81
+N +
Sbjct: 164 NNPL 167
Score = 31.2 bits (71), Expect = 0.33
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFHL----EDLTTLDLSHNNI 81
L LR LNL ++ V L L ++L+ +
Sbjct: 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 35.8 bits (83), Expect = 0.012
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 15/91 (16%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED-----LTT 73
+ L + +N L L LR L L + G + L T
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278
Query: 74 LDLSHNNI-----KQIPDALENAKRTKATLD 99
L L +N I + + ++ L+
Sbjct: 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309
Score = 35.5 bits (82), Expect = 0.015
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 32 NLEKLFGELTELQCLRTLNLRYNKIKNSGIPV---DLFHLEDLTTLDLSHNNI-----KQ 83
L L L + L T+ L N + L L L L +N + +
Sbjct: 82 ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 141
Query: 84 IPDALENAKRTKATLDKRACSAIHAVNLRN 113
I AL+ K + + ++
Sbjct: 142 IARALQELAVNKK---AKNAPPLRSIICGR 168
Score = 34.7 bits (80), Expect = 0.027
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPV---DLFHLEDLTTLD 75
E S+ + + + +F L E ++ + L N I ++ +DL +
Sbjct: 7 EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 66
Query: 76 LSHNNIKQIPD 86
S ++ D
Sbjct: 67 FSDIFTGRVKD 77
Score = 33.9 bits (78), Expect = 0.041
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 46 LRTLNLRYNKIKNSGIPV---DLFHLEDLTTLDLSHNNI-----KQIPDALENAK 92
+ +L+ + I L + + + LS N I + + + + + K
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport
signal, disease mutation, endoplasmic reticulum,
ER-golgi transport, golgi apparatus, membrane; 2.70A
{Homo sapiens} PDB: 3eg9_B
Length = 770
Score = 34.8 bits (79), Expect = 0.026
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 164 RLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
+L +H ++ ++ V L +FLL GL +F+W G +
Sbjct: 626 QLLPIHTLDVKS---TMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSS 673
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 34.1 bits (77), Expect = 0.047
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 167 RVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
R+ S+ V E L ++LL+ GL LF+W G
Sbjct: 622 RLLPLTKSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASV 669
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 32.5 bits (74), Expect = 0.054
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 46 LRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
L L N + +P L L L T L N
Sbjct: 33 TTELVLTGNNLTA--LPPGLLDALPALRTAHLGAN 65
Score = 28.2 bits (63), Expect = 1.5
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYN 54
T L + NNL L G L L LRT +L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 27.5 bits (61), Expect = 2.6
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 59 SGIPVDLFHLEDLTTLDLSHNNIKQIP 85
+ PVD T L L+ NN+ +P
Sbjct: 27 TAFPVDT------TELVLTGNNLTALP 47
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 32.9 bits (75), Expect = 0.066
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 18 VTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED---LTTL 74
+ + + + L + + +L I +S + +E L L
Sbjct: 44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVL 103
Query: 75 DLSHNNI 81
++ N +
Sbjct: 104 NVESNFL 110
Score = 28.3 bits (63), Expect = 2.0
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 8/76 (10%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED---LTTLD 75
E S+ N + L + LR LN+ N + + L +
Sbjct: 73 EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFK 132
Query: 76 LSHNNIKQIPDALENA 91
+ + + +E
Sbjct: 133 ADNQRQSVLGNQVEMD 148
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 31.3 bits (71), Expect = 0.27
Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 13/122 (10%)
Query: 31 NNLEKLFGELTELQCLRT----LNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
+++ ++ E Q L + R+N + P++ +E+ L I +
Sbjct: 36 REIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA 95
Query: 87 ALENAKRTKATLDKRACSAIHAVNLRNFLAA-----ECRTIREEQGDESEEFLSLFNTGI 141
L + ++ ++ R +L+A + + D E+ F
Sbjct: 96 RLTGLLEYYFNFFR----GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSE 151
Query: 142 SY 143
SY
Sbjct: 152 SY 153
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 31.1 bits (69), Expect = 0.45
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 163 TRLYRVHAPLHQA---------QASSIHLEPVPVL--SESLDPRFVFLLDAGLKLFIWNG 211
+Y +H +A +A+ + P P+ S + ++L+D G +LF+W G
Sbjct: 638 PDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMG 697
Query: 212 PKAKNTFVFLL 222
A VF +
Sbjct: 698 GDAVPALVFDV 708
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA
exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus
cereus} PDB: 3q4i_A
Length = 205
Score = 30.1 bits (68), Expect = 0.54
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 63 VDLFHLEDLTTLDLSHNNIKQIPDALENAKR 93
V+ F +L L ++ N QI + K
Sbjct: 167 VEFFGENELPNLSIARNTEDQIKEMFAYMKD 197
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 30.6 bits (69), Expect = 0.58
Identities = 9/57 (15%), Positives = 24/57 (42%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
++ ++ + L+ LR L +R + + + LE + +L +S ++
Sbjct: 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518
Score = 27.6 bits (61), Expect = 5.9
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 40 LTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
T + + L++ + + G+ L + L L++
Sbjct: 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 30.7 bits (69), Expect = 0.62
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
L+ L +R I + L L L +
Sbjct: 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525
Score = 28.8 bits (64), Expect = 2.5
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
+R + L Y + G+ +L L++
Sbjct: 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle
transport, transport signal sequence, cytoplasm,
endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B
2nup_B 3egd_B 3egx_B
Length = 751
Score = 30.3 bits (67), Expect = 0.77
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 161 YTTRLYRVHAPLHQA-----QASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAK 215
LYR+ + + +E L FL+D G +IW G
Sbjct: 600 IHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCD 659
Query: 216 NTFVFLL 222
N F+ +
Sbjct: 660 NNFIEDV 666
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 29.5 bits (66), Expect = 1.1
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 37 FGELTELQCLRTLNLRY-NKIKNSGIPVDLFHLEDLTTLDLSH----NNIKQIPDALENA 91
F E +L L+ L+L I + ++L + L TL + ++ + +AL +
Sbjct: 240 FQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 298
Query: 92 KRTKATLDKRACSAIHAVNLRNFLAAECR 120
+ + A I + +CR
Sbjct: 299 QINCSHFTTIARPTIGNKKNQEIWGIKCR 327
Score = 26.8 bits (59), Expect = 9.6
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
+ +++ E ++ ++L + I+ S + L L L L +
Sbjct: 75 FRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS--D 132
Query: 86 DALENAKRTKA--TLDKRACSAIHAVNLRNFLAAECRTIRE 124
+ + L+ CS L+ L + C + E
Sbjct: 133 PIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDE 172
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed
with SEC22, protein transport; 2.30A {Homo sapiens} PDB:
2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Length = 769
Score = 29.5 bits (65), Expect = 1.4
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 183 EPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTF 218
EPV + S S+ + L+D ++ I++G
Sbjct: 637 EPVLLDSSSILADRILLMDTFFQILIYHGETIAQWR 672
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 28.4 bits (64), Expect = 1.7
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 19 TIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LED---LTTL 74
+ L ++I L+ L ++ ++ + + L L+ L +L
Sbjct: 40 EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA-FALAEMLKVNNTLKSL 98
Query: 75 DLSHNNI 81
++ N I
Sbjct: 99 NVESNFI 105
Score = 28.4 bits (64), Expect = 1.8
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 24 EHLSIVNNNLE----KLFGE-LTELQCLRTLNLRYNKIKNSGIPVDLFH-LED---LTTL 74
+ SIV E L L++LN+ N I SGI + L L+ L L
Sbjct: 68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI-LALVEALQSNTSLIEL 126
Query: 75 DLSHNNIKQIPDA 87
+ N + + +
Sbjct: 127 RID-NQSQPLGNN 138
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.27A {Streptococcus suis}
Length = 206
Score = 28.2 bits (63), Expect = 2.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 63 VDLFHLEDLTTLDLSHNNIKQIPDALENAKR 93
F L+DL L L N +Q+ LE ++
Sbjct: 168 SGFFSLDDLPPLYLGKNTAEQLALCLEASRS 198
>1oqk_A Conserved protein MTH11; OB fold, archaeal RNAse P protein subunit,
hydrolase; NMR {Methanothermobacterthermautotrophicus}
SCOP: b.137.1.1
Length = 97
Score = 26.9 bits (60), Expect = 2.7
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 215 KNTFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFI 252
+NT +D G ++ + PK F F G + I
Sbjct: 43 RNTLRIEMDDGREITV---PKGIAVFHFRTPQGELVEI 77
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 4.9
Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 82 KQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLS 135
K++ + +K + ++A + N R + + + + F
Sbjct: 96 KRLQELDAASKVMEQEWREKAKKDLEEWNQR--QSEQVEKNKINNRIADKAFYQ 147
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 27.1 bits (60), Expect = 7.4
Identities = 19/155 (12%), Positives = 47/155 (30%), Gaps = 28/155 (18%)
Query: 11 MASK--SESVTIGLTE-HLSIVNNNLEK----------LFGELTELQCLRT----LNLRY 53
M+ S V + + E + I ++ ++ E Q L + R+
Sbjct: 3 MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRH 62
Query: 54 NKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRN 113
+ + P + + T+ I+ L + + + ++ + +
Sbjct: 63 QLMLDYLEPGKTY--GNRPTVTELLETIETPQKKLTGLLKYYSLFFR----GMYEFDQKE 116
Query: 114 FLAA-----ECRTIREEQGDESEEFLSLFNTGISY 143
++ A E D+ E+ F +Y
Sbjct: 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAY 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.402
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,983,207
Number of extensions: 229923
Number of successful extensions: 1981
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1165
Number of HSP's successfully gapped: 624
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)