RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8923
(273 letters)
>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 72.9 bits (179), Expect = 5e-17
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASG 152
+++ D++ A+ AV L ++L RE QG+ES+ F+S F G+ Y EGG SG
Sbjct: 58 QSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGG-VESG 114
>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId:
9606]}
Length = 124
Score = 69.5 bits (170), Expect = 1e-15
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
+ + D+ +AI V L ++L RE QG ES FL F +G+ Y +GG ASGF
Sbjct: 67 ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGF 124
>d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 121
Score = 67.2 bits (164), Expect = 6e-15
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYI-EGGRTASGF 153
++T D+ A SAI L L R QG E +SLF I +GG + G
Sbjct: 59 QSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGG 118
>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 126
Score = 65.6 bits (160), Expect = 3e-14
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
++ D++ +AI+ + +L + RE QG ESE F + F G+ Y +GG ASG
Sbjct: 68 NSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGG-VASGM 125
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 54.6 bits (131), Expect = 2e-10
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
V + V RLY+V + I + +S + F+LD G +F W G K+
Sbjct: 4 VVPNEVVVQRLYQVKGKKN------IRATERALNWDSFNTGDCFILDLGQNIFAWCGGKS 57
Score = 26.1 bits (57), Expect = 2.9
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 95 KATLDKRACSAIHAVNLR-NFLAAECRTIREEQGDESEEFLSLF 137
K+ + +R + A+ +R + + + G+E E + +
Sbjct: 56 KSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVL 99
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum
[TaxId: 44689]}
Length = 102
Score = 50.7 bits (121), Expect = 4e-09
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 161 YTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
Y RL + + + VP+ + SL+ FLLDAGL ++ +NG K+
Sbjct: 2 YKPRLLHISGDKN------AKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKS 49
Score = 32.2 bits (73), Expect = 0.016
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRT--IREEQGDESEEFLSLF 137
K++ ++ +A A + + E D EF L
Sbjct: 48 KSSPQEKNKAAEVARAIDAERKGLPKVEVFCETDSDIPAEFWKLL 92
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 49.5 bits (118), Expect = 1e-08
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
+TRL++V A + V + +L+ F+L ++W G A
Sbjct: 3 STRLFQVRANSA----GATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGA 51
Score = 36.0 bits (83), Expect = 7e-04
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 240 FVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273
F+L ++W G A K+ + L +
Sbjct: 33 DAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVL 66
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 51.7 bits (122), Expect = 3e-08
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
E L++ NN L +L L+ L +N + +P ++L L + +N +++
Sbjct: 287 EELNVSNNKLIELPALPPRLE---RLIASFNHLAE--VP---ELPQNLKQLHVEYNPLRE 338
Query: 84 IPDALEN 90
PD E+
Sbjct: 339 FPDIPES 345
Score = 44.8 bits (104), Expect = 5e-06
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90
L LN+ NK+ +P LE L S N++ ++P+ +N
Sbjct: 283 PPSLEELNVSNNKL--IELPALPPRLE---RLIASFNHLAEVPELPQN 325
Score = 42.1 bits (97), Expect = 4e-05
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTK 95
L L + S +P HLE +L S N++ ++P+ ++ K
Sbjct: 40 AHELELNNLGL--SSLPELPPHLE---SLVASCNSLTELPELPQSLKSLL 84
Score = 32.1 bits (71), Expect = 0.061
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 66 FHLEDLTTLDLSHNNIKQIPDALENAKR 93
L L++S+N + ++P +R
Sbjct: 281 DLPPSLEELNVSNNKLIELPALPPRLER 308
Score = 30.9 bits (68), Expect = 0.14
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
L + N L L L+ +L N + +P + L +L + +NN+K
Sbjct: 41 HELELNNLGLSSLPELPPHLE---SLVASCNSLTE--LP---ELPQSLKSLLVDNNNLKA 92
Query: 84 IP 85
+
Sbjct: 93 LS 94
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId:
9606]}
Length = 104
Score = 46.5 bits (110), Expect = 1e-07
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
RL++V + VPV ES + F+LD G + W G +
Sbjct: 3 QRLFQVKGRRV------VRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNS 48
Score = 35.3 bits (81), Expect = 0.001
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 240 FVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273
F+LD G + W G + + K +++ I
Sbjct: 30 DCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63
Score = 28.7 bits (64), Expect = 0.25
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 94 TKATLDKRACSAIHAVNLR-NFLAAECRTIREEQGDESEEFLSLF 137
+ + +R + + +R N + R E+G E E L +
Sbjct: 46 SNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQVL 90
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 48.4 bits (113), Expect = 3e-07
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTL 74
L + + ++ L L LR L+L N + ++GI + + L L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431
Query: 75 DLSHNNI-KQIPDALENAKRTKATLD 99
L +++ D L+ ++ K +L
Sbjct: 432 VLYDIYWSEEMEDRLQALEKDKPSLR 457
Score = 48.4 bits (113), Expect = 4e-07
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 24 EHLSIVNNNL--EKLFGELTELQCLRTLNLRYNKIKNSG---IPVDLFHLEDLTTLDLSH 78
+ L I L + L LQ + + L + + I L L L+L
Sbjct: 5 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64
Query: 79 NNI-----KQIPDALENAKRTKATLD 99
N + + L+ L
Sbjct: 65 NELGDVGVHCVLQGLQTPSCKIQKLS 90
Score = 43.4 bits (100), Expect = 2e-05
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 44 QCLRTLNLRYNKIKNSG---IPVDLFHLEDLTTLDLSHNNI-----KQIPDALENAKRTK 95
LR L L + +S + L L LDLS+N + Q+ +++
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 96 ATLD 99
L
Sbjct: 429 EQLV 432
Score = 43.0 bits (99), Expect = 2e-05
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI-----KQIPDALEN 90
+++L+++ ++ ++ L L+ + L + K I AL
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV 53
Score = 37.3 bits (84), Expect = 0.002
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTL 74
+ + + + L + + L L LNLR N++ + G+ L L+ + L
Sbjct: 30 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 89
Query: 75 DLSHNN 80
L +
Sbjct: 90 SLQNCC 95
Score = 26.5 bits (56), Expect = 4.8
Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 70 DLTTLDLSHNNI--KQIPDALENAKRTKATLDKRAC--SAIHAVNLRNFLAAECRTIRE 124
D+ +LD+ + + + L ++ + + C + ++ + L + E
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQ-VVRLDDCGLTEARCKDISSALRV-NPALAE 59
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 46.9 bits (110), Expect = 1e-06
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
+L++ NN+ + ++ L L+ L NK+ S + L +L ++ L HN I
Sbjct: 310 TYLTLYFNNISDI-SPVSSLTKLQRLFFANNKV--SDVS-SLANLTNINWLSAGHNQISD 365
Query: 84 IP 85
+
Sbjct: 366 LT 367
Score = 44.6 bits (104), Expect = 5e-06
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
+ L NN + + L L + L+ +N+I S + L +L +T L L+
Sbjct: 332 QRLFFANNKVSDV-SSLANLTNINWLSAGHNQI--SDLT-PLANLTRITQLGLNDQ 383
Score = 42.3 bits (98), Expect = 4e-05
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 40 LTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIKQIP 85
T+L + TL IK+ G+ +L +LT ++ S+N + I
Sbjct: 40 QTDLDQVTTLQADRLGIKSIDGVE----YLNNLTQINFSNNQLTDIT 82
Score = 36.1 bits (82), Expect = 0.003
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
L+ L L L +N I S I + L L L ++N + +
Sbjct: 306 LKNLTYLTLYFNNI--SDIS-PVSSLTKLQRLFFANNKVSDVS 345
Score = 33.1 bits (74), Expect = 0.030
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
L ++ + G + L L +N N++ + I L +L L + +++N
Sbjct: 47 TTLQADRLGIKSIDG-VEYLNNLTQINFSNNQL--TDIT-PLKNLTKLVDILMNNNQ 99
Score = 31.5 bits (70), Expect = 0.088
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
L NN + + L L+L N++K+ L L +LT LDL++N I +
Sbjct: 201 SLIATNNQISDITPLGIL-TNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNL 256
Query: 85 PD 86
Sbjct: 257 AP 258
Score = 28.8 bits (63), Expect = 0.77
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKR 93
L L + + V L+ +TTL IK I D +E
Sbjct: 21 LAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSI-DGVEYLNN 67
Score = 27.3 bits (59), Expect = 2.5
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 20/80 (25%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDL------------------- 65
L + NN + L L+ L L L L N+I N L
Sbjct: 245 DLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303
Query: 66 FHLEDLTTLDLSHNNIKQIP 85
+L++LT L L NNI I
Sbjct: 304 SNLKNLTYLTLYFNNISDIS 323
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 43.1 bits (101), Expect = 3e-06
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 160 VYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
+ RL+ + + + P ++ E L V LLD ++F+W G +
Sbjct: 9 AHPPRLFACSNKIGRFVIEEV---PGELMQEDLATDDVMLLDTWDQVFVWVGKDS 60
Score = 29.6 bits (66), Expect = 0.16
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 240 FVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273
V LLD ++F+W G ++ K++ A++
Sbjct: 42 DVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRY 75
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 42.2 bits (98), Expect = 1e-05
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 39 ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
+ T R L+LR KI I L+ +D S N I+++
Sbjct: 13 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDG 58
Score = 29.9 bits (66), Expect = 0.20
Identities = 6/45 (13%), Positives = 13/45 (28%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHL 68
L + + + L ++ N+I+ L L
Sbjct: 21 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRL 65
Score = 26.8 bits (58), Expect = 2.2
Identities = 6/37 (16%), Positives = 10/37 (27%), Gaps = 3/37 (8%)
Query: 54 NKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90
I+ + + LDL I I +
Sbjct: 6 ELIEQAA---QYTNAVRDRELDLRGYKIPVIENLGAT 39
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 43.3 bits (100), Expect = 2e-05
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSG---IPVDLFHLEDLTTLDLSHNNIK 82
+I + + +F L E ++ + L N I + ++ +DL + S
Sbjct: 13 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72
Query: 83 QIPD 86
++ D
Sbjct: 73 RVKD 76
Score = 39.9 bits (91), Expect = 2e-04
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 46 LRTLNLRYNKIKNSG---IPVDLFH-LEDLTTLDLSHNNIKQIPDALE 89
L+TL L+YN+I+ + + + DL L+L+ N + D ++
Sbjct: 275 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 322
Score = 26.0 bits (55), Expect = 6.2
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 24 EHLSIVNNNLEK------LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLS 77
+ L + N +E ++ L L L N+ VD + ++ +
Sbjct: 276 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD--EIREVFST-RG 332
Query: 78 HNNIKQIPDALE 89
+ ++ D E
Sbjct: 333 RGELDELDDMEE 344
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 41.6 bits (96), Expect = 4e-05
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
NN E G L L+ L TL L+ N + IP F L L N
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205
Score = 35.1 bits (79), Expect = 0.007
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 39 ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
E++++ +N + +P DL +D T L LS N +
Sbjct: 5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFS 47
Score = 32.8 bits (73), Expect = 0.038
Identities = 15/64 (23%), Positives = 20/64 (31%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE 89
N L+ L L N L LE+L TL L N++ IP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 90 NAKR 93
+
Sbjct: 193 GSHL 196
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 39.7 bits (92), Expect = 5e-05
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 22/85 (25%)
Query: 24 EHLSIVNNNLEKLFGELTELQCL----------------------RTLNLRYNKIKNSGI 61
HL + +N L L L L+CL + L L N+++ S
Sbjct: 23 THLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAA 82
Query: 62 PVDLFHLEDLTTLDLSHNNIKQIPD 86
L L L+L N++ Q
Sbjct: 83 IQPLVSCPRLVLLNLQGNSLCQEEG 107
Score = 36.2 bits (83), Expect = 8e-04
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 47 RTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90
R L+L + + + L L +T LDLSHN ++ +P AL
Sbjct: 1 RVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPPALAA 41
Score = 30.8 bits (69), Expect = 0.059
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
L + + +L L L +L + L+L +N++ +P L L L L S N ++ +
Sbjct: 3 LHLAHKDLTVL-CHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALENVD 59
Query: 86 D 86
Sbjct: 60 G 60
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 41.6 bits (96), Expect = 6e-05
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
T L + NN + ++ G+ L+ L TL L NKI P L L L LS N +
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQL 91
Query: 82 KQIPDAL 88
K++P+ +
Sbjct: 92 KELPEKM 98
Score = 36.2 bits (82), Expect = 0.002
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-------HLEDLTTLDLSHNNIK 82
NN L K+ G L + + ++ + L N I S I + F + + L N ++
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNI--SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
Query: 83 QIP 85
Sbjct: 286 YWE 288
Score = 34.2 bits (77), Expect = 0.011
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 24 EHLSIVNNNLEKL-------FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLD 75
+ + + NNN+ + G T+ ++L N ++ I F + +
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304
Query: 76 L 76
L
Sbjct: 305 L 305
Score = 30.4 bits (67), Expect = 0.23
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNI 81
+ L + N + K+ L + + L N +K+SG ++ L+ + ++ NI
Sbjct: 103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162
Query: 82 KQIPDAL 88
IP L
Sbjct: 163 TTIPQGL 169
Score = 29.6 bits (65), Expect = 0.40
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 61 IPVDLFHLEDLTTLDLSHNNIKQIPD 86
+P DL D LDL +N I +I D
Sbjct: 25 VPKDLP--PDTALLDLQNNKITEIKD 48
Score = 28.5 bits (62), Expect = 0.76
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 44 QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
LR L+L NK+ +P L + + + L +NNI I
Sbjct: 219 PHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGS 259
Score = 28.5 bits (62), Expect = 0.93
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
+ G ++ L + + I IP L LT L L N I ++
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGLP--PSLTELHLDGNKITKVD 187
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 41.3 bits (95), Expect = 6e-05
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
N L LT+L+ L +LN+ +N + G +L+ ++N
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNL--CGEIPQGGNLQRFDVSAYANNK 302
Score = 35.9 bits (81), Expect = 0.003
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 50 NLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPD 86
+LR N+I + +P L L+ L +L++S NN+ +IP
Sbjct: 250 DLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 28.9 bits (63), Expect = 0.59
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNK 55
L++ NNL + LQ NK
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 39.1 bits (89), Expect = 3e-04
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 37 FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIP 85
L++ +I +P +L+ L N+K++P
Sbjct: 194 NDVFHGASGPVILDISRTRI--HSLPSYGLENLKKLRARST--YNLKKLP 239
Score = 36.0 bits (81), Expect = 0.003
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 44 QC-LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
C R + +K+ IP DL + L ++ I
Sbjct: 7 HCSNRVFLCQESKVTE--IPSDLP--RNAIELRFVLTKLRVIQK 46
Score = 34.1 bits (76), Expect = 0.011
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 53 YNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIP-DALENAKR 93
+ +P D+F LD+S I +P LEN K+
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 226
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus)
[TaxId: 9796]}
Length = 121
Score = 36.9 bits (85), Expect = 4e-04
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 157 EDT--VYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDA--GLKLFIWNGP 212
ED +LY+V S + + P +L F+LD K+F+W G
Sbjct: 1 EDAANRKLAKLYKVSNGAGPMVVSLVA-DENPFAQGALRSEDCFILDHGKDGKIFVWKGK 59
Query: 213 KA 214
+A
Sbjct: 60 QA 61
Score = 28.4 bits (63), Expect = 0.38
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 94 TKATLDKRACSAIHAVNL--RNFLAAECRTIREEQGDESEEFLSLF 137
+A +++R + A + + + + +G E+ F F
Sbjct: 59 KQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFF 104
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 37.7 bits (86), Expect = 8e-04
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH 78
+N + + L L L ++L+ N+I S + L + +L + L++
Sbjct: 182 DNKISDIS-PLASLPNLIEVHLKNNQI--SDVS-PLANTSNLFIVTLTN 226
Score = 32.7 bits (73), Expect = 0.036
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 40 LTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
+L + TL+ + I + +L +L L+L N I +
Sbjct: 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLA 79
Score = 30.8 bits (68), Expect = 0.12
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
L + + + + V L+ +TTL + I
Sbjct: 18 LANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTIEG 58
Score = 30.8 bits (68), Expect = 0.15
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 40 LTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
L L L TL NKI S I L L +L + L +N I +
Sbjct: 169 LANLSKLTTLKADDNKI--SDIS-PLASLPNLIEVHLKNNQISDVS 211
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 36.3 bits (83), Expect = 0.001
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 18 VTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKI-KNSGIPVDLFHLEDLTTLDL 76
V + L+ ++ L + L +LNL N++ + + + +L L+L
Sbjct: 39 VAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 98
Query: 77 SHNNIKQIPD 86
S N +K +
Sbjct: 99 SGNELKSERE 108
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 173
Score = 34.6 bits (79), Expect = 0.005
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 13/68 (19%)
Query: 164 RLYRVHAPLHQAQASSIHLE------------PVPVLSESLDPRFVFLLDAGLKLFIWNG 211
+Y +H + + E P+ S + ++L+D G +LF+W G
Sbjct: 2 DVYSLHD-MADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMG 60
Query: 212 PKAKNTFV 219
A V
Sbjct: 61 GDAVPALV 68
Score = 26.5 bits (58), Expect = 3.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 241 VFLLDAGLKLFIWNGPKAKNTF 262
++L+D G +LF+W G A
Sbjct: 46 LYLIDNGNELFLWMGGDAVPAL 67
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 35.0 bits (79), Expect = 0.006
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 40 LTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
EL + + + IK+ + +L ++T L L+ N +
Sbjct: 42 QNELNSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKL 80
Score = 33.4 bits (75), Expect = 0.015
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 39 ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLS 77
L L L+ L L N I S + L L++L L+L
Sbjct: 173 PLAGLTKLQNLYLSKNHI--SDLR-ALAGLKNLDVLELF 208
Score = 30.0 bits (66), Expect = 0.27
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 64 DLFHLEDLTTLDLSHNNIKQIP 85
L L L L LS N+I +
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLR 194
Score = 28.8 bits (63), Expect = 0.59
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 41 TELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
NL+ + + V L + + ++++IK +
Sbjct: 21 DAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSVQ 62
Score = 26.9 bits (58), Expect = 2.1
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKI 56
+ + N++++ + G + L + L L NK+
Sbjct: 49 DQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKL 80
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 31.9 bits (72), Expect = 0.021
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 160 VYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLD--AGLKLFIWNGPKA 214
LY+V Q + + + P E L F+LD K++IW G KA
Sbjct: 5 AQAAALYKVSDATGQMNLTKVA-DSSPFALELLISDDCFVLDNGLCGKIYIWKGRKA 60
Score = 30.4 bits (68), Expect = 0.081
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 95 KATLDKRACSAIHAVNLRNFLAAECRT--IREEQGDESEEFLSLF 137
KA +R + A + + T QG ES F F
Sbjct: 59 KANEKERQAALQVAEGFISRMQYAPNTQVEILPQGRESPIFKQFF 103
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 31.9 bits (71), Expect = 0.052
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 41 TELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90
T L L + + V L+ +TTL IK I D +E
Sbjct: 15 TALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSI-DGVEY 60
Score = 30.4 bits (67), Expect = 0.15
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 40 LTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNN 80
T+L + TL IK+ G+ +L +LT ++ S+N
Sbjct: 36 QTDLDQVTTLQADRLGIKSIDGVE----YLNNLTQINFSNNQ 73
Score = 29.6 bits (65), Expect = 0.32
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 65 LFHLEDLTTLDLSHNNIKQIP 85
L +L L LD+S N + I
Sbjct: 168 LANLTTLERLDISSNKVSDIS 188
Score = 29.2 bits (64), Expect = 0.42
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 39 ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL 74
L L L L++ NK+ S I V L L +L +L
Sbjct: 167 PLANLTTLERLDISSNKV--SDISV-LAKLTNLESL 199
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 142
Score = 30.9 bits (70), Expect = 0.084
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 179 SIHLEPVPVL--SESLDPRFVFLLDAGLKLFIWNG 211
S+ +P PVL S S+ P + LLD + I++G
Sbjct: 7 SMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHG 41
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 98
Score = 29.9 bits (67), Expect = 0.096
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGI 61
E I+N+ LEK FG +Q + N+ Y IK I
Sbjct: 48 IETFEIINDYLEKTFGRKYSIQ--KDRNIYYIDIKARNI 84
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 30.8 bits (68), Expect = 0.12
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
L + +EK+ L+ L+ + L L N I+ I L +E+L L L N
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL 81
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor,
Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 30.9 bits (68), Expect = 0.15
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 61 IPVDLFHLEDLTTLDLSHNNIKQIP 85
+PV + + L N I +P
Sbjct: 26 VPVGIPA--ASQRIFLHGNRISHVP 48
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 29.3 bits (64), Expect = 0.47
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
N + G L + R + + F + +DLS++ I
Sbjct: 10 KNLHPDVTGRLLSQG---VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 58
Score = 28.5 bits (62), Expect = 0.82
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
LS F E +L L+ L+L ++L + L TL +
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 27.4 bits (59), Expect = 1.4
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 44 QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN-IKQIPD 86
+ LR + L E+LT L + + ++ +
Sbjct: 6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLEL 49
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 25.1 bits (55), Expect = 3.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 26 LSIVNNNLEKLFGELTELQC 45
L + L+ L +L EL
Sbjct: 65 LRGSSRRLDLLHQQLQELHA 84
>d1oqka_ b.137.1.1 (A:) Hypothetical protein MTH11 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 78
Score = 24.7 bits (54), Expect = 4.8
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 215 KNTFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFI 252
+NT +D G ++ + PK F F G + I
Sbjct: 31 RNTLRIEMDDGREITV---PKGIAVFHFRTPQGELVEI 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.402
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 958,459
Number of extensions: 42807
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 95
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)