BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8925
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex
pdb|4AXG|B Chain B, Structure Of Eif4e-Cup Complex
Length = 248
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 35/45 (77%)
Query: 35 VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
V +E + KHPL N WTLWY END++K WE+ Q EITSF TVEDFW
Sbjct: 62 VRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFW 106
>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gpppa
pdb|1IPC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gtp
pdb|2GPQ|A Chain A, Cap-Free Structure Of Eif4e Suggests Basis For Its
Allosteric Regulation
pdb|2V8W|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8W|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2W97|A Chain A, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
pdb|3TF2|A Chain A, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|B Chain B, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|C Chain C, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|D Chain D, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3U7X|A Chain A, Crystal Structure Of The Human Eif4e-4ebp1 Peptide
Complex Without Cap
pdb|3U7X|B Chain B, Crystal Structure Of The Human Eif4e-4ebp1 Peptide
Complex Without Cap
pdb|4AZA|A Chain A, Improved Eif4e Binding Peptides By Phage Display Guided
Design.
pdb|4AZA|C Chain C, Improved Eif4e Binding Peptides By Phage Display Guided
Design
Length = 217
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 35 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 73
>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
pdb|4DUM|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
Length = 240
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 58 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 96
>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of
Eif4e-M7gpppa- 4ebp1 Peptide
pdb|3AM7|A Chain A, Crystal Structure Of The Ternary Complex Of
Eif4e-M7gtp-4ebp2 Peptide
Length = 191
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 9 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 47
>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ1|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ4|A Chain A, Cocrystal Structure Of Eif4e4E-Bp1 Peptide
pdb|1EJH|A Chain A, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|B Chain B, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|C Chain C, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|D Chain D, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1L8B|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
pdb|1L8B|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
Length = 190
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 8 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 46
>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
Length = 217
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
IKHPL N+W LW+F+ DK+K W+ N R I+ F TVEDFW
Sbjct: 35 IKHPLQNRWALWFFKKDKSKTWQANLRLISKFDTVEDFW 73
>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
M7g Cap
pdb|3M94|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
M2,2,7g Cap
Length = 189
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
++HPL W LWY + D++K WE+ +++ F TVEDFW
Sbjct: 1 MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFW 39
>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation
Factor Eif4e In Complex With M7gdp And Eif4gi Residues
393 To 490
Length = 213
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 41 IKHPLHNKWTLWYFE--NDKNKGWEENQREITSFSTVEDFW 79
+KHPL+ KWTLWY + DK++ W + R +TSF TVE+FW
Sbjct: 35 VKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFW 75
>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With
M7gdp, Nmr, 20 Structures
Length = 213
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 41 IKHPLHNKWTLWYFE--NDKNKGWEENQREITSFSTVEDFW 79
+KHPL+ KWTLWY + DK++ W + R +TSF TVE+FW
Sbjct: 35 VKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFW 75
>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With
M7gpppa And 4e-Bp
pdb|3HXI|A Chain A, Crystal Structure Of Schistosome Eif4e Complexed With
M7gpppg And 4e-Bp
Length = 189
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 43 HPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
HPL + W+ + F+ K W+E ++ +FST+EDFW
Sbjct: 10 HPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFW 46
>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
pdb|2IDR|B Chain B, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
Length = 177
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 43 HPLHNKWTLWYFENDKNK----GWEENQREITSFSTVEDFW 79
HPL N WT W F+N + K W I +FSTVEDFW
Sbjct: 2 HPLENAWTFW-FDNPQGKSRQVAWGSTIHPIHTFSTVEDFW 41
>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To
7- Methyl-Gdp
Length = 177
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 43 HPLHNKWTLWYFENDKNK----GWEENQREITSFSTVEDFW 79
HPL N WT W F+N + K W I +FSTVEDFW
Sbjct: 2 HPLENAWTFW-FDNPQGKSRQVAWGSTIHPIHTFSTVEDFW 41
>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
From Pisum Sativum
pdb|2WMC|B Chain B, Crystal Structure Of Eukaryotic Initiation Factor 4e
From Pisum Sativum
pdb|2WMC|C Chain C, Crystal Structure Of Eukaryotic Initiation Factor 4e
From Pisum Sativum
pdb|2WMC|D Chain D, Crystal Structure Of Eukaryotic Initiation Factor 4e
From Pisum Sativum
pdb|2WMC|E Chain E, Crystal Structure Of Eukaryotic Initiation Factor 4e
From Pisum Sativum
pdb|2WMC|F Chain F, Crystal Structure Of Eukaryotic Initiation Factor 4e
From Pisum Sativum
pdb|2WMC|G Chain G, Crystal Structure Of Eukaryotic Initiation Factor 4e
From Pisum Sativum
pdb|2WMC|H Chain H, Crystal Structure Of Eukaryotic Initiation Factor 4e
From Pisum Sativum
Length = 178
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 43 HPLHNKWTLWY---FENDKNKGWEENQREITSFSTVEDFW 79
H L N WT W+ K W + R I +FSTVE+FW
Sbjct: 3 HLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFW 42
>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With
M7gtp
pdb|2JGC|A Chain A, Structure Of The Human Eif4e Homologous Protein, 4ehp
Without Ligand Bound
Length = 195
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 43 HPLHNKWTLWYFENDKNK-----GWEENQREITSFSTVEDFW 79
HPL +T WY + +E+N ++I +F++VE FW
Sbjct: 15 HPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFW 56
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene
Expression Via A Novel Mode Of Recognition Of The
Methyl-7 Guanosine Cap Moiety
Length = 207
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 44 PLHNKWTLWY---FENDKNKGWEENQREITSFSTVEDFW 79
PLH+ WT W N ++I + TV+ FW
Sbjct: 31 PLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFW 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.125 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,329,153
Number of Sequences: 62578
Number of extensions: 72771
Number of successful extensions: 100
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 17
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)