Query psy8925
Match_columns 80
No_of_seqs 111 out of 445
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 22:57:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1670|consensus 99.6 1.5E-15 3.3E-20 111.6 3.0 47 34-80 26-72 (212)
2 PTZ00040 translation initiatio 99.4 1.8E-13 4E-18 101.6 3.4 42 39-80 34-79 (233)
3 KOG1669|consensus 99.1 1.5E-11 3.3E-16 89.7 1.6 61 20-80 7-70 (208)
4 PF01652 IF4E: Eukaryotic init 99.1 1.5E-11 3.2E-16 84.8 1.3 37 44-80 1-40 (165)
5 COG5053 CDC33 Translation init 98.8 1.5E-09 3.2E-14 80.0 2.1 44 37-80 31-76 (217)
6 PHA01516 hypothetical protein 22.5 16 0.00034 24.1 -1.2 26 42-67 69-97 (98)
7 PF11665 DUF3265: Protein of u 11.5 1.5E+02 0.0032 15.5 1.0 10 46-55 1-10 (28)
8 cd00047 PTPc Protein tyrosine 10.2 71 0.0015 22.2 -0.6 8 73-80 52-59 (231)
9 PHA02747 protein tyrosine phos 9.4 83 0.0018 23.8 -0.5 8 73-80 104-111 (312)
10 smart00194 PTPc Protein tyrosi 8.5 88 0.0019 22.3 -0.7 9 72-80 79-87 (258)
No 1
>KOG1670|consensus
Probab=99.56 E-value=1.5e-15 Score=111.63 Aligned_cols=47 Identities=53% Similarity=1.143 Sum_probs=42.6
Q ss_pred ccccccccCCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925 34 EVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 34 ~~~~~~~~~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
.+.|....+||||+.|||||..++++.+|+++|+.|++|+|||+||+
T Consensus 26 ~~~~~~~~~hpL~~~WTlW~l~~d~~ksW~d~Lk~v~tF~TVeeFW~ 72 (212)
T KOG1670|consen 26 SAKPENHIKHPLQNNWTLWFLKNDRNKSWEDMLKEVTTFDTVEEFWS 72 (212)
T ss_pred ccCcccccccccccceeEEeecCCccccHHHHhhhccccccHHHHHH
Confidence 33566667899999999999999998899999999999999999995
No 2
>PTZ00040 translation initiation factor E4; Provisional
Probab=99.39 E-value=1.8e-13 Score=101.59 Aligned_cols=42 Identities=29% Similarity=0.695 Sum_probs=36.9
Q ss_pred cccCCCCccccEEeEEcCC----ccccHhhccceeeeecchhhccC
Q psy8925 39 LMIKHPLHNKWTLWYFEND----KNKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 39 ~~~~HPLq~~WtfWy~~~~----k~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
....|||++.|||||+.+. +..+|+++|++|++|+|||+||+
T Consensus 34 ~~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~ 79 (233)
T PTZ00040 34 LSTPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQ 79 (233)
T ss_pred cCCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHH
Confidence 4557999999999998763 45789999999999999999995
No 3
>KOG1669|consensus
Probab=99.13 E-value=1.5e-11 Score=89.71 Aligned_cols=61 Identities=23% Similarity=0.577 Sum_probs=52.1
Q ss_pred CCCCCCCccccCCCccccccccCCCCccccEEeEEcCCc---cccHhhccceeeeecchhhccC
Q psy8925 20 QPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDK---NKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~HPLq~~WtfWy~~~~k---~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
+++...++..+....|+..+.+.||||+..+|||.++.. .++|+++|++|++|.|||+||+
T Consensus 7 ek~~~vkn~~s~~r~a~v~~d~dh~l~y~~t~~y~~r~~Gv~~qsYe~~ik~i~t~~SvE~fw~ 70 (208)
T KOG1669|consen 7 EKSHYVKNSVSEERRARVLMDMDHPLQYVYTFWYERRTPGVSKQSYEKNIKSIGTFESVEQFWY 70 (208)
T ss_pred hhhhhhccchhhhhccccCCCCCCcceEEEEEEEEecCCCCChhhHHHHhHhheeeeeHHHHHH
Confidence 455566677777777888888999999999999999743 5889999999999999999994
No 4
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs. eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....
Probab=99.13 E-value=1.5e-11 Score=84.78 Aligned_cols=37 Identities=49% Similarity=1.069 Sum_probs=33.1
Q ss_pred CCccccEEeEEcC---CccccHhhccceeeeecchhhccC
Q psy8925 44 PLHNKWTLWYFEN---DKNKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 44 PLq~~WtfWy~~~---~k~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
||++.|||||+.. ++..+|.++|++|++|+|||+||+
T Consensus 1 pL~~~Wt~w~~~~~~~~~~~~y~~~l~~i~~f~TvE~Fw~ 40 (165)
T PF01652_consen 1 PLQNKWTFWYDKKQKNSKSDDYEDSLKPIGTFSTVEEFWS 40 (165)
T ss_dssp EEEEEEEEEEEECCCCCTTSCTGGGEEEEEEEEEHHHHHH
T ss_pred CcCCEEEEEEEecCCCCchhhhhhhceEEEEEEeHHHHHH
Confidence 8999999999953 345899999999999999999995
No 5
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.5e-09 Score=80.01 Aligned_cols=44 Identities=39% Similarity=0.976 Sum_probs=37.9
Q ss_pred cccccCCCCccccEEeEEcCCc--cccHhhccceeeeecchhhccC
Q psy8925 37 SELMIKHPLHNKWTLWYFENDK--NKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 37 ~~~~~~HPLq~~WtfWy~~~~k--~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
.....+|||+..|||||..++. .+.|.+.|+.|++|+|||+||.
T Consensus 31 ~~f~~~hpl~~~wtlw~l~p~e~g~esw~dlLk~I~tf~Tveefwy 76 (217)
T COG5053 31 AHFMNKHPLAFHWTLWFLKPPEDGLESWSDLLKSIITFETVEEFWY 76 (217)
T ss_pred hhHhhcCccccceEEEEecCCccchhHHHHHHhhheeeecHHHHHH
Confidence 4456779999999999998743 4569999999999999999994
No 6
>PHA01516 hypothetical protein
Probab=22.46 E-value=16 Score=24.08 Aligned_cols=26 Identities=27% Similarity=0.671 Sum_probs=19.3
Q ss_pred CCCCccccEEeEEcC---CccccHhhccc
Q psy8925 42 KHPLHNKWTLWYFEN---DKNKGWEENQR 67 (80)
Q Consensus 42 ~HPLq~~WtfWy~~~---~k~~~y~~~Lk 67 (80)
+.-|-..|+=||+.+ +....|-.+|+
T Consensus 69 em~ltdrwvdwy~e~~~~d~preyl~~lk 97 (98)
T PHA01516 69 EMELTDRWVDWYSECQCYDDPREYLESLK 97 (98)
T ss_pred HccchhhhhhhhhhhccccCHHHHHHHhc
Confidence 356889999999875 44566777776
No 7
>PF11665 DUF3265: Protein of unknown function (DUF3265); InterPro: IPR021681 This family of proteins with unknown function appear to be restricted to Vibrio.
Probab=11.51 E-value=1.5e+02 Score=15.48 Aligned_cols=10 Identities=30% Similarity=0.889 Sum_probs=7.2
Q ss_pred ccccEEeEEc
Q psy8925 46 HNKWTLWYFE 55 (80)
Q Consensus 46 q~~WtfWy~~ 55 (80)
++.|-|||--
T Consensus 1 ~nawhF~yal 10 (28)
T PF11665_consen 1 RNAWHFYYAL 10 (28)
T ss_pred CceEEEEEEE
Confidence 3678899754
No 8
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=10.16 E-value=71 Score=22.24 Aligned_cols=8 Identities=75% Similarity=1.444 Sum_probs=6.6
Q ss_pred cchhhccC
Q psy8925 73 STVEDFWW 80 (80)
Q Consensus 73 ~TVE~FW~ 80 (80)
+|+++||+
T Consensus 52 ~t~~~FW~ 59 (231)
T cd00047 52 NTVEDFWR 59 (231)
T ss_pred hhHHHHHH
Confidence 49999995
No 9
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=9.37 E-value=83 Score=23.81 Aligned_cols=8 Identities=50% Similarity=1.045 Sum_probs=7.0
Q ss_pred cchhhccC
Q psy8925 73 STVEDFWW 80 (80)
Q Consensus 73 ~TVE~FW~ 80 (80)
+||++||+
T Consensus 104 ~T~~dFW~ 111 (312)
T PHA02747 104 ETCADFWK 111 (312)
T ss_pred hhHHHHHH
Confidence 69999995
No 10
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=8.53 E-value=88 Score=22.27 Aligned_cols=9 Identities=78% Similarity=1.191 Sum_probs=7.5
Q ss_pred ecchhhccC
Q psy8925 72 FSTVEDFWW 80 (80)
Q Consensus 72 F~TVE~FW~ 80 (80)
-+|+++||+
T Consensus 79 ~~t~~dFW~ 87 (258)
T smart00194 79 PSTVEDFWR 87 (258)
T ss_pred hHHHHHHHH
Confidence 479999994
Done!