Query psy8925
Match_columns 80
No_of_seqs 111 out of 445
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 22:57:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ipb_A Eukaryotic translation 99.6 5.3E-16 1.8E-20 112.1 2.4 52 29-80 23-74 (217)
2 4axg_A Eukaryotic translation 99.5 1.2E-15 4E-20 112.2 1.2 46 35-80 62-107 (248)
3 1l8b_A Eukaryotic translation 99.5 2.4E-15 8.3E-20 106.4 1.5 44 37-80 4-47 (190)
4 3m94_A Translation initiation 99.5 3.1E-15 1.1E-19 106.3 1.9 40 41-80 1-40 (189)
5 3hxi_A Eukaryotic translation 99.5 4E-15 1.4E-19 105.7 2.0 42 39-80 6-47 (189)
6 1ap8_A Translation initiation 99.4 4.5E-14 1.5E-18 101.9 4.1 44 37-80 31-76 (213)
7 2idr_A Eukaryotic translation 99.4 3.1E-14 1.1E-18 99.8 0.5 39 42-80 1-42 (177)
8 2jgb_A Eukaryotic translation 99.4 4.5E-14 1.5E-18 100.4 1.0 42 39-80 11-57 (195)
9 2oc3_A Tyrosine-protein phosph 12.7 34 0.0012 24.5 -0.6 8 73-80 114-121 (303)
10 4grz_A Tyrosine-protein phosph 12.7 34 0.0012 24.1 -0.6 8 73-80 90-97 (288)
No 1
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*
Probab=99.57 E-value=5.3e-16 Score=112.12 Aligned_cols=52 Identities=50% Similarity=1.015 Sum_probs=43.8
Q ss_pred ccCCCccccccccCCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925 29 AVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 29 ~~~~~~~~~~~~~~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
...++.+.|+...+|||++.|||||+.+++.++|+++|++|++|+|||+||+
T Consensus 23 ~~~~~~~~~e~~~~hpL~~~Wt~W~~~~~~~~~y~~~l~~I~tf~TVE~FW~ 74 (217)
T 1ipb_A 23 ESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWA 74 (217)
T ss_dssp ----CCCCGGGTSCCEEEEEEEEEEECCCTTSCTGGGEEEEEEEEEHHHHHH
T ss_pred cccccccCcccccCCCCCCeEEEEEEeCCcccchhhhceEEEEEccHHHHHH
Confidence 4445555667778899999999999999889999999999999999999995
No 2
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=99.53 E-value=1.2e-15 Score=112.17 Aligned_cols=46 Identities=65% Similarity=1.215 Sum_probs=39.9
Q ss_pred cccccccCCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925 35 VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 35 ~~~~~~~~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
+.+....+|||++.|||||+.++++.+|.++|++|++|+|||+||+
T Consensus 62 ~~~~~~~kHpL~~~WtlW~~~~~~~~~~~~~l~~I~~f~TVE~FW~ 107 (248)
T 4axg_A 62 VRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWS 107 (248)
T ss_dssp ----CCCCCEEEEEEEEEEESCSCCCTTBCCEEEEEEEEEHHHHHH
T ss_pred cCcccccCCCCCCeEEEEEeeCCCccchHHhCeEEEEEcCHHHHHH
Confidence 3456677899999999999999999999999999999999999995
No 3
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=99.51 E-value=2.4e-15 Score=106.40 Aligned_cols=44 Identities=59% Similarity=1.213 Sum_probs=37.7
Q ss_pred cccccCCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925 37 SELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 37 ~~~~~~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
|+....|||++.|||||+.++++++|+++|++|++|+|||+||+
T Consensus 4 ~~~~~~hpL~~~Wt~W~~~~~~~~~y~~~l~~i~tf~TVE~FW~ 47 (190)
T 1l8b_A 4 PEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWA 47 (190)
T ss_dssp -----CCEEEEEEEEEEEECCSSSCTGGGEEEEEEEEEHHHHHH
T ss_pred ccccccCCCCCeEEEEEEcCCCccchhhhceEEEEEecHHHHHH
Confidence 35567899999999999999889999999999999999999995
No 4
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=99.51 E-value=3.1e-15 Score=106.32 Aligned_cols=40 Identities=45% Similarity=1.181 Sum_probs=38.0
Q ss_pred cCCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 41 ~~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
++||||++|||||++.++..+|+++|++|++|+|||+||+
T Consensus 1 ~~HpL~~~Wt~W~~~~~~~~~y~~~l~~i~tf~TVE~FW~ 40 (189)
T 3m94_A 1 MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWS 40 (189)
T ss_dssp CCCEEEEEEEEEEECCCSSSCGGGGEEEEEEEEEHHHHHH
T ss_pred CCCCCCCcEEEEEECCCCccChhhhceEEEEEecHHHHHH
Confidence 4799999999999999889999999999999999999995
No 5
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=99.50 E-value=4e-15 Score=105.65 Aligned_cols=42 Identities=36% Similarity=0.858 Sum_probs=38.6
Q ss_pred cccCCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925 39 LMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 39 ~~~~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
...+||||++|||||++++++++|+++|++|++|+|||+||+
T Consensus 6 ~~~~HpL~~~Wt~W~~~~~~~~~~~~~l~~i~~f~TVE~FW~ 47 (189)
T 3hxi_A 6 PEFPHPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFWS 47 (189)
T ss_dssp -CCCCEEEEEEEEEEECCCTTCCGGGGEEEEEEEEEHHHHHH
T ss_pred CCccCCCCCeEEEEEECCCCccChhhhceEEEEEeeHHHHHH
Confidence 345799999999999999888999999999999999999995
No 6
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Probab=99.45 E-value=4.5e-14 Score=101.90 Aligned_cols=44 Identities=45% Similarity=1.000 Sum_probs=39.1
Q ss_pred cccccCCCCccccEEeEEcCCc--cccHhhccceeeeecchhhccC
Q psy8925 37 SELMIKHPLHNKWTLWYFENDK--NKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 37 ~~~~~~HPLq~~WtfWy~~~~k--~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
......|||++.|||||+.+++ ..+|+++|++|++|+|||+||+
T Consensus 31 ~~~~~~hpL~~~Wt~W~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ 76 (213)
T 1ap8_A 31 AHFDVKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWA 76 (213)
T ss_dssp CCCCCSSEEEEEEEEEEECCCGGGTSCHHHHCEEEEEEEESHHHHH
T ss_pred CCCCCccccCCcEEEEEEcCCcccccchhhhceEEEEEccHHHHHH
Confidence 3445789999999999999864 6789999999999999999995
No 7
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=99.40 E-value=3.1e-14 Score=99.75 Aligned_cols=39 Identities=44% Similarity=0.988 Sum_probs=35.5
Q ss_pred CCCCccccEEeEEcCC---ccccHhhccceeeeecchhhccC
Q psy8925 42 KHPLHNKWTLWYFEND---KNKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 42 ~HPLq~~WtfWy~~~~---k~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
+|||+++|||||+++. +..+|+++|++|++|+|||+||+
T Consensus 1 ~HpL~~~Wt~W~~~~~~~~~~~~y~~~l~~i~~f~TVE~FW~ 42 (177)
T 2idr_A 1 AHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWG 42 (177)
T ss_dssp CCEEEEEEEEEEECTTCSSCEEETTEEECCEEEEEEHHHHHH
T ss_pred CCCCCCeEEEEEEcCCCCCcccchHhhCeEEEEEcCHHHHHH
Confidence 5999999999999863 46789999999999999999995
No 8
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=99.39 E-value=4.5e-14 Score=100.35 Aligned_cols=42 Identities=33% Similarity=0.797 Sum_probs=36.8
Q ss_pred cccCCCCccccEEeEEcCC-----ccccHhhccceeeeecchhhccC
Q psy8925 39 LMIKHPLHNKWTLWYFEND-----KNKGWEENQREITSFSTVEDFWW 80 (80)
Q Consensus 39 ~~~~HPLq~~WtfWy~~~~-----k~~~y~~~Lk~I~tF~TVE~FW~ 80 (80)
....|||++.|||||+.+. +.++|+++|++|++|+|||+||+
T Consensus 11 ~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~ 57 (195)
T 2jgb_A 11 GPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWR 57 (195)
T ss_dssp CTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHH
T ss_pred CCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHH
Confidence 3567999999999999752 45689999999999999999995
No 9
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine phosphatase, human, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=12.71 E-value=34 Score=24.49 Aligned_cols=8 Identities=50% Similarity=1.066 Sum_probs=7.0
Q ss_pred cchhhccC
Q psy8925 73 STVEDFWW 80 (80)
Q Consensus 73 ~TVE~FW~ 80 (80)
+||++||+
T Consensus 114 ~T~~dFW~ 121 (303)
T 2oc3_A 114 HTLLDFWR 121 (303)
T ss_dssp GGHHHHHH
T ss_pred hHHHHHHH
Confidence 79999995
No 10
>4grz_A Tyrosine-protein phosphatase non-receptor type 6; phosphatase domain, hydrolase; 1.37A {Homo sapiens} PDB: 4gry_A 4gs0_A* 1gwz_A 1fpr_A*
Probab=12.70 E-value=34 Score=24.05 Aligned_cols=8 Identities=63% Similarity=1.294 Sum_probs=7.0
Q ss_pred cchhhccC
Q psy8925 73 STVEDFWW 80 (80)
Q Consensus 73 ~TVE~FW~ 80 (80)
+||++||+
T Consensus 90 ~T~~dFW~ 97 (288)
T 4grz_A 90 ATVNDFWQ 97 (288)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 79999995
Done!