RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8925
         (80 letters)



>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 213

 Score = 59.3 bits (143), Expect = 4e-13
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 12 SLNKEKEQQPQ-ENTTTTAVTTPEVESELMIKHPLHNKWTLWYFEN--DKNKGWEENQRE 68
           ++K+ E+    ++TT T  T     +   +KHPL+ KWTLWY +   DK++ W +  R 
Sbjct: 5  EVSKKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKPAVDKSESWSDLLRP 64

Query: 69 ITSFSTVEDFWW 80
          +TSF TVE+FW 
Sbjct: 65 VTSFQTVEEFWA 76


>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 182

 Score = 57.7 bits (139), Expect = 1e-12
 Identities = 24/39 (61%), Positives = 30/39 (76%)

Query: 42 KHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW 80
          KHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW 
Sbjct: 1  KHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWA 39


>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite
           reductase subunit alpha, DsrA {Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 185

 Score = 25.4 bits (55), Expect = 0.64
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 40  MIKHPLHNKWTLWYFENDKNKGWEENQRE 68
           M+K P +N +  +  +  K   + E  ++
Sbjct: 153 MVKAPRNNPFMFFEKDELKPSAYTEELKK 181


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.122    0.381 

Gapped
Lambda     K      H
   0.267   0.0535    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 281,150
Number of extensions: 9822
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 7
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.3 bits)