Query psy8926
Match_columns 263
No_of_seqs 167 out of 1490
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 22:58:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 99.9 2.2E-25 7.5E-30 184.1 14.4 151 55-231 2-152 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 7.4E-25 2.5E-29 171.1 9.4 126 51-184 3-128 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.8 1.1E-20 3.6E-25 149.3 11.0 128 55-185 3-134 (143)
4 2rpb_A Hypothetical membrane p 99.8 4.2E-19 1.4E-23 134.4 8.0 110 61-178 4-113 (113)
5 2zuo_A MVP, major vault protei 98.5 1.7E-05 5.8E-10 76.5 20.8 151 24-178 460-648 (861)
6 2zuo_A MVP, major vault protei 87.3 3.5 0.00012 40.2 10.2 23 160-182 635-657 (861)
7 4efa_E V-type proton ATPase su 67.1 35 0.0012 27.7 9.2 13 176-188 10-22 (233)
8 2jp3_A FXYD domain-containing 59.1 7.9 0.00027 25.3 2.9 20 3-22 19-38 (67)
9 2kk7_A V-type ATP synthase sub 58.6 29 0.001 21.3 5.6 25 207-231 17-41 (52)
10 2jo1_A Phospholemman; FXYD1, N 56.9 8 0.00027 25.5 2.6 20 3-22 18-37 (72)
11 2zxe_G FXYD10, phospholemman-l 56.4 9.3 0.00032 25.4 2.9 20 3-22 21-40 (74)
12 3n2f_G Na+/K+ ATPase gamma sub 45.7 10 0.00036 20.9 1.6 19 3-21 12-30 (31)
13 3bk6_A PH stomatin; archaea, t 37.8 32 0.0011 26.8 4.0 65 143-221 88-153 (188)
14 3v6i_B V-type ATP synthase, su 36.0 1.1E+02 0.0039 21.5 8.3 8 206-213 35-42 (105)
15 2y0n_E MALE-specific lethal 1 29.7 16 0.00055 22.9 0.7 21 35-57 34-54 (56)
16 4efa_G V-type proton ATPase su 27.3 1.8E+02 0.0061 21.1 8.4 10 183-192 12-22 (119)
17 3arc_L Photosystem II reaction 25.2 33 0.0011 19.3 1.4 18 7-24 18-35 (37)
18 4efa_G V-type proton ATPase su 22.6 53 0.0018 24.0 2.6 32 192-223 14-45 (119)
19 2acm_B Mucin-1; auto-catalytic 21.7 89 0.003 19.5 3.0 19 160-178 34-52 (55)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.93 E-value=2.2e-25 Score=184.09 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=128.6
Q ss_pred ccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchH
Q psy8926 55 FITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLH 134 (263)
Q Consensus 55 ~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~ 134 (263)
|++++..+|+|+++++++...++|+||++|.+++++.|++.||.++...+. ++ ...+.+.+++++|+++|+|+++
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~~~v~----~~-~~~i~~~~~~~lR~vig~~~l~ 76 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVK----NY-IMATSQISQTTLRSVIGQAHLD 76 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHHSSS----CH-HHHHHHHHHHHHHHHHHTSCHH
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHHHHhc----CH-HHHHHHHHHHHHHHHHccCCHH
Confidence 579999999999999998888999999999999999999999887643221 22 4578899999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy8926 135 EVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRA 214 (263)
Q Consensus 135 e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~aer~~~~~a~~~~~~~~~~Aeae~~~~ 214 (263)
++++ +|++|+.++++.+++.+. +|||+|++|.|++++||+++.+++.+. .+|+.+++++
T Consensus 77 ell~-~R~~i~~~i~~~l~~~~~--~~GI~v~~v~I~~i~~p~ev~~a~~~~------------------~~Aere~~A~ 135 (188)
T 3bk6_A 77 ELLS-ERDKLNMQLQRIIDEATD--PWGIKVTAVEIKDVELPAGMQKAMARQ------------------AEAERERRAR 135 (188)
T ss_dssp HHHH-CHHHHHHHHHHHHHHHTG--GGTEEEEEEEEEEEEEETTHHHHHHHH------------------HHHHHHHHHH
T ss_pred HHHh-hHHHHHHHHHHHHHHHHH--hcCeEEEEEEEEecCCCHHHHHHHHHH------------------HHHHHHHHHH
Confidence 9996 899999999999999999 999999999999999999999997531 1344555677
Q ss_pred HHHHhhHHHHHHHHHHH
Q psy8926 215 VIEAEKEAQIAKIQYEQ 231 (263)
Q Consensus 215 ii~A~~~a~a~~i~~~~ 231 (263)
+++|+|+++++++..++
T Consensus 136 i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 136 ITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 78888888888777654
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.91 E-value=7.4e-25 Score=171.10 Aligned_cols=126 Identities=13% Similarity=0.142 Sum_probs=100.3
Q ss_pred EEcCccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhh
Q psy8926 51 AMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSI 130 (263)
Q Consensus 51 f~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~ 130 (263)
++.||++++.++|+|+++++.+++.++|+|+..+.+|+++.|++.||.++..-+ .+.+..+.+.+++++|+++|+
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~~~v-----~~~~~~l~~~~~~~lR~vig~ 77 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANI-----TNADSATRLLAQTTLRNALGT 77 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHHHSS-----SCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhHhhh-----hhHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999999999988999999999999999999999998764322 233678999999999999999
Q ss_pred cchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHH
Q psy8926 131 HNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 184 (263)
Q Consensus 131 ~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~ 184 (263)
++++++++ +|++|..++++.+++.++ +|||+|.+|.|++++||+++++|+.
T Consensus 78 ~~ldeil~-~r~~i~~~i~~~l~~~~~--~~GI~V~~V~ikdi~~P~~v~~am~ 128 (133)
T 4fvg_A 78 KNLSQILS-DREEIAHHMQSTLDDATD--DWGIKVERVEIKDVKLPVQLQRAMA 128 (133)
T ss_dssp SCHHHHHH-CHHHHHHHHHHHHHHHHG--GGTEEEEEEEEEEEECCCC------
T ss_pred ccHHHHHh-hHHHHHHHHHHHHHHHHh--cCCEEEEEEEEEecCCCHHHHHHHH
Confidence 99999996 899999999999999999 9999999999999999999999954
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.84 E-value=1.1e-20 Score=149.26 Aligned_cols=128 Identities=9% Similarity=0.108 Sum_probs=115.2
Q ss_pred ccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEee-cchhHHHHHhhc-ccc--hhhHHHHHHHHHHHHHHhhh
Q psy8926 55 FITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVL-SVSSVYDIVKNY-TAD--YDKALIFNKVHHELNQFCSI 130 (263)
Q Consensus 55 ~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~-d~~~v~~~~~~~-~~~--~~~~~l~~~v~~~lr~v~~~ 130 (263)
|++++.++|+|+++++++++.+.|+|+.++.+|+++.|++. ||.++......| +.. .....+.+.+++++|+++|+
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999998 688877766554 332 22678899999999999999
Q ss_pred cchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHHH
Q psy8926 131 HNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 185 (263)
Q Consensus 131 ~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~~ 185 (263)
++++|+++ +|++|.+++++.+++.+. +|||+|.+|.|+|+++|+++.+|+.+
T Consensus 83 ~tldeils-~R~~i~~~v~~~~~~~~~--~~Gi~V~~v~IkdI~~p~~~~~am~~ 134 (143)
T 1win_A 83 LTVEQIYQ-DRDQFAKLVREVAAPDVG--RMGIEILSFTIKDVYDKVDYLSSLGK 134 (143)
T ss_dssp SCHHHHHH-THHHHHHHHHHHHHHHHT--TTTEEEEEEECCCEECTTCHHHHHCC
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHHH--hCCCEEEEEEEEeecChHHHHHHHHH
Confidence 99999996 899999999999999999 99999999999999999999999763
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.78 E-value=4.2e-19 Score=134.41 Aligned_cols=110 Identities=17% Similarity=0.160 Sum_probs=99.1
Q ss_pred EeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhh
Q psy8926 61 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDL 140 (263)
Q Consensus 61 ~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~ 140 (263)
++|+|+++++++...+.|+|++++.+++++.|++.||.++..-+.+ ....+.+.+++++|+++|+++++++++ +
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~~~~v~~-----~~~~l~~~~~~~lR~vig~~~l~ei~~-~ 77 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSD-----FLMAIVKLAQTNLRAIIGEMELDETLS-G 77 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTTTTTH-----HHHHHHHHHHHHHHHHHTSCCTTHHHH-C
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHHHHhcCC-----HHHHHHHHHHHHHHHHHhcCcHHHHHh-C
Confidence 5789999999998899999999999999999999999776432222 256799999999999999999999996 9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChH
Q psy8926 141 FDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPET 178 (263)
Q Consensus 141 R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~ 178 (263)
|+++++++++.+++.++ +|||+|.+|.|++++||++
T Consensus 78 R~~i~~~i~~~l~~~~~--~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 78 RDIINARLREELDKITD--RWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHHHHHG--GGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHHHH--hcCeEEEEEEEEEecCCCC
Confidence 99999999999999999 9999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.49 E-value=1.7e-05 Score=76.50 Aligned_cols=151 Identities=7% Similarity=0.018 Sum_probs=93.9
Q ss_pred EEecCCeEEEEEeCC-cccccccCCceeEEcCccceeEEeeee---------EEEe--ecCC------ccccCCCCcEEE
Q psy8926 24 HKIEEGHVGVYFRGG-ALLSTISGPGFHAMIPFITTFRHVQVT---------LQTD--EVKN------VPCGTSGGVMIY 85 (263)
Q Consensus 24 ~~V~~ge~gVv~~~G-k~~~~v~~pGlhf~~P~i~~v~~~d~r---------~q~~--~~~~------~~~~T~D~~~v~ 85 (263)
|.||.+.+.-++.+. +-.+.+.||-+.+.-|- +.+..++++ +.++ ...+ ..+-|+|...+.
T Consensus 460 ~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL~ 538 (861)
T 2zuo_A 460 YRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQ 538 (861)
T ss_dssp EECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEEE
T ss_pred EEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEEE
Confidence 678888888777542 22456789998776663 554444431 1111 1111 257899999999
Q ss_pred EEEEEEEEee--cchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHH-HHHHHHH-----------
Q psy8926 86 FDRIEVVNVL--SVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQI-DENLKTA----------- 151 (263)
Q Consensus 86 vd~~~~~~~~--d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i-~~~i~~~----------- 151 (263)
+...-.|+.- ||....+.-+.|.....-..+=..+.+.+|..+++.+++++.. +...| ...+...
T Consensus 539 L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHk-nsa~iir~aVFg~~~~~~~~~~~~ 617 (861)
T 2zuo_A 539 LQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHK-NSARIIRMAVFGFEMSEDTGPDGT 617 (861)
T ss_dssp EEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHH-HHHHHHHHHSSCCC----------
T ss_pred EEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhh-hHHHHHHHhhcCCCcccccccccc
Confidence 8877778763 6654444444443322123455678899999999999999974 32222 2222211
Q ss_pred ----HH--HHhhcCCCCeEEEEEEeeCCCCChH
Q psy8926 152 ----LQ--RELNEMAPGLFIQAVRVTKPKIPET 178 (263)
Q Consensus 152 ----l~--~~l~~~~~GI~V~~v~I~~i~~p~~ 178 (263)
.+ -.+. ..|+.|++|.|+.+.|-+.
T Consensus 618 ~~~~~~~~~~F~--~N~lvitsVDvqsvEpvDq 648 (861)
T 2zuo_A 618 LLPKARDQAVFP--QNGLVVSSVDVQSVEPVDQ 648 (861)
T ss_dssp ---CCCSCEECT--TTCEEEEEEEEEEEEESSH
T ss_pred cccCcccceEEc--cCCeEEEEEeeeeecccCH
Confidence 00 0134 6799999999999998764
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=87.30 E-value=3.5 Score=40.20 Aligned_cols=23 Identities=9% Similarity=0.289 Sum_probs=14.6
Q ss_pred CCCeEEEEEEeeCCCCChHHHHH
Q psy8926 160 APGLFIQAVRVTKPKIPETIRKN 182 (263)
Q Consensus 160 ~~GI~V~~v~I~~i~~p~~v~~a 182 (263)
-..|+|.++...|..--+.++++
T Consensus 635 itsVDvqsvEpvDqrtrd~LqkS 657 (861)
T 2zuo_A 635 VSSVDVQSVEPVDQRTRDALQRS 657 (861)
T ss_dssp EEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeeeeecccCHHHHHHHHHH
Confidence 45666777766666666665554
No 7
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=67.08 E-value=35 Score=27.74 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=8.4
Q ss_pred ChHHHHHHHHHHH
Q psy8926 176 PETIRKNYELMEA 188 (263)
Q Consensus 176 p~~v~~a~~~~~a 188 (263)
|+++.+-+++|.+
T Consensus 10 ~~~v~~~i~~m~~ 22 (233)
T 4efa_E 10 PNQVNDELNKMQA 22 (233)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566776777744
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=59.10 E-value=7.9 Score=25.31 Aligned_cols=20 Identities=15% Similarity=-0.220 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHhhc
Q psy8926 3 DSLLVGIVSLFSLLLVFNYS 22 (263)
Q Consensus 3 ~~~~i~~~~~~~~~~l~~~~ 22 (263)
.+++|+|+++.++.+++..|
T Consensus 19 igGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred ecchhhHHHHHHHHHHHHHc
Confidence 46788888887777666554
No 9
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=58.64 E-value=29 Score=21.33 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q psy8926 207 AETERKRAVIEAEKEAQIAKIQYEQ 231 (263)
Q Consensus 207 Aeae~~~~ii~A~~~a~a~~i~~~~ 231 (263)
.+|+.++.-+.+++++++.+|..++
T Consensus 17 ~eA~~eA~~Il~eA~~eA~~Ii~eA 41 (52)
T 2kk7_A 17 DDAKAEANKIISEAEAEKAKILEKA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444446666666666666543
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=56.93 E-value=8 Score=25.52 Aligned_cols=20 Identities=30% Similarity=0.062 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHhhc
Q psy8926 3 DSLLVGIVSLFSLLLVFNYS 22 (263)
Q Consensus 3 ~~~~i~~~~~~~~~~l~~~~ 22 (263)
.+++|+|+++.++.+++..|
T Consensus 18 iGGLifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVLS 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHc
Confidence 46778888877776666554
No 11
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=56.40 E-value=9.3 Score=25.45 Aligned_cols=20 Identities=10% Similarity=-0.008 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHhhc
Q psy8926 3 DSLLVGIVSLFSLLLVFNYS 22 (263)
Q Consensus 3 ~~~~i~~~~~~~~~~l~~~~ 22 (263)
.|++|+++++.++.+++..|
T Consensus 21 igGLifA~vLfi~GI~iilS 40 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIILLA 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred eccchhHHHHHHHHHHHHHc
Confidence 46788888888777766655
No 12
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=45.70 E-value=10 Score=20.86 Aligned_cols=19 Identities=16% Similarity=0.072 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q psy8926 3 DSLLVGIVSLFSLLLVFNY 21 (263)
Q Consensus 3 ~~~~i~~~~~~~~~~l~~~ 21 (263)
.+++|+++++.++.+++..
T Consensus 12 igGLi~a~vLfi~gi~iil 30 (31)
T 3n2f_G 12 NGGLIFAALAFIVGLIIIL 30 (31)
T ss_dssp HHHTTTHHHHHHHHHHHHT
T ss_pred hcchhHHHHHHHHHHHHhc
Confidence 4677778887777766554
No 13
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=37.76 E-value=32 Score=26.82 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHH-hhcCCCCeEEEEEEeeCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH
Q psy8926 143 QIDENLKTALQRE-LNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKE 221 (263)
Q Consensus 143 ~i~~~i~~~l~~~-l~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~aer~~~~~a~~~~~~~~~~Aeae~~~~ii~A~~~ 221 (263)
++.+.+.+.+..- +. -..+.|.++.+.. .+-+.+.+.... ||++. |+ ..+|++++++....|++.
T Consensus 88 ~i~~~l~~~~~~~GI~--v~~v~I~~i~~p~-ev~~a~~~~~~A---ere~~--A~------i~~Aege~~a~~~~a~a~ 153 (188)
T 3bk6_A 88 QLQRIIDEATDPWGIK--VTAVEIKDVELPA-GMQKAMARQAEA---ERERR--AR------ITLAEAERQAAEKLREAA 153 (188)
T ss_dssp HHHHHHHHHTGGGTEE--EEEEEEEEEEEET-THHHHHHHHHHH---HHHHH--HH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCeE--EEEEEEEecCCCH-HHHHHHHHHHHH---HHHHH--HH------HHHhHHHHHHHHHHHHHH
Confidence 4555555555541 22 3478899999874 566666665433 12222 21 226667777766666553
No 14
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=35.96 E-value=1.1e+02 Score=21.53 Aligned_cols=8 Identities=50% Similarity=0.497 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q psy8926 206 DAETERKR 213 (263)
Q Consensus 206 ~Aeae~~~ 213 (263)
+|++++.+
T Consensus 35 ~AEAeA~r 42 (105)
T 3v6i_B 35 RAEAEAKA 42 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 15
>2y0n_E MALE-specific lethal 1 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Mus musculus}
Probab=29.69 E-value=16 Score=22.95 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=14.8
Q ss_pred EeCCcccccccCCceeEEcCccc
Q psy8926 35 FRGGALLSTISGPGFHAMIPFIT 57 (263)
Q Consensus 35 ~~~Gk~~~~v~~pGlhf~~P~i~ 57 (263)
.-||..... +.+- +|.+||.+
T Consensus 34 ~AFG~~lP~-~~~s-~FsLPW~~ 54 (56)
T 2y0n_E 34 VAFGRPLPK-LAPQ-NFELPWLD 54 (56)
T ss_dssp EETTEECBC-CCCC-CCCCTTC-
T ss_pred eEcccccCC-CCcc-cccCcccc
Confidence 468887764 5554 89999965
No 16
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=27.27 E-value=1.8e+02 Score=21.09 Aligned_cols=10 Identities=30% Similarity=0.375 Sum_probs=4.5
Q ss_pred HHHH-HHHHHH
Q psy8926 183 YELM-EAEKTK 192 (263)
Q Consensus 183 ~~~~-~aer~~ 192 (263)
++.+ .||+++
T Consensus 12 IQqLL~AEk~A 22 (119)
T 4efa_G 12 IATLLQAEKEA 22 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 4443 455443
No 17
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=25.21 E-value=33 Score=19.34 Aligned_cols=18 Identities=17% Similarity=0.061 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhceE
Q psy8926 7 VGIVSLFSLLLVFNYSFH 24 (263)
Q Consensus 7 i~~~~~~~~~~l~~~~~~ 24 (263)
-.|.++++++.+++++++
T Consensus 18 y~GLLlifvlavlFssyf 35 (37)
T 3arc_L 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 346777778888887753
No 18
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=22.63 E-value=53 Score=23.99 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHH
Q psy8926 192 KLLISIQHQKVVEKDAETERKRAVIEAEKEAQ 223 (263)
Q Consensus 192 ~~~~a~~~~~~~~~~Aeae~~~~ii~A~~~a~ 223 (263)
..+.|++.......+|...+..++-+|+.+|+
T Consensus 14 qLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~ 45 (119)
T 4efa_G 14 TLLQAEKEAHEIVSKARKYRQDKLKQAKTDAA 45 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444445666666676766766665
No 19
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=21.67 E-value=89 Score=19.47 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=12.5
Q ss_pred CCCeEEEEEEeeCCCCChH
Q psy8926 160 APGLFIQAVRVTKPKIPET 178 (263)
Q Consensus 160 ~~GI~V~~v~I~~i~~p~~ 178 (263)
.|.+.|.+|.++|+.||..
T Consensus 34 ~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 34 RYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHCCCEEEEEEECC-----
T ss_pred cccceecceeEEeccCCCc
Confidence 6778888999999999964
Done!