Query psy8926
Match_columns 263
No_of_seqs 167 out of 1490
Neff 8.3
Searched_HMMs 13730
Date Fri Aug 16 22:58:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8926.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8926hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wina_ d.43.2.1 (A:) Flotilli 99.7 2.8E-18 2E-22 133.5 10.5 126 57-185 5-134 (143)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 28.3 13 0.00093 19.5 1.4 18 7-24 18-35 (37)
3 d2vjva1 d.58.57.1 (A:6-130) IS 10.4 1.5E+02 0.011 19.7 4.1 28 142-171 29-56 (125)
4 d1t77a2 b.55.1.6 (A:2076-2185) 10.1 87 0.0063 20.5 2.7 39 46-85 51-89 (110)
5 d1vmea1 c.23.5.1 (A:251-398) R 10.0 1.3E+02 0.0096 20.0 3.9 30 146-177 18-47 (148)
6 d3elna1 b.82.1.19 (A:5-190) Cy 10.0 71 0.0052 23.0 2.4 15 49-63 150-164 (186)
7 d1f4pa_ c.23.5.1 (A:) Flavodox 8.7 95 0.0069 21.0 2.6 15 161-175 28-42 (147)
8 d2fyxa1 d.58.57.1 (A:1-130) Pu 8.2 1.8E+02 0.013 19.3 3.9 28 142-171 28-55 (130)
9 d1s4ka_ a.35.1.6 (A:) Putative 8.2 2.8E+02 0.021 18.2 4.7 26 171-196 41-66 (120)
10 d1m56d_ f.23.8.1 (D:) Bacteria 8.0 1.7E+02 0.012 15.7 2.8 18 5-22 25-42 (42)
No 1
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.75 E-value=2.8e-18 Score=133.47 Aligned_cols=126 Identities=10% Similarity=0.120 Sum_probs=109.1
Q ss_pred ceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHH-HHHh-hcccc--hhhHHHHHHHHHHHHHHhhhcc
Q psy8926 57 TTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVY-DIVK-NYTAD--YDKALIFNKVHHELNQFCSIHN 132 (263)
Q Consensus 57 ~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~-~~~~-~~~~~--~~~~~l~~~v~~~lr~v~~~~~ 132 (263)
.++.++|+|+++++++.+.++|+||.++.+++++.|++.||.+.. .... +.+.. ..+..|++.+.+++|+++++|+
T Consensus 5 ~s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~ 84 (143)
T d1wina_ 5 SSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLT 84 (143)
T ss_dssp CCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456789999999999988899999999999999999998776543 2222 22222 2368899999999999999999
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHHH
Q psy8926 133 LHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 185 (263)
Q Consensus 133 ~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~~ 185 (263)
++++++ +|++|.+++.+.+++.+. +|||+|+++.|+||++|+++.+|+.+
T Consensus 85 l~el~~-~R~~i~~~v~~~i~~~l~--~~Gi~v~~v~I~dI~~~~~~~~a~~~ 134 (143)
T d1wina_ 85 VEQIYQ-DRDQFAKLVREVAAPDVG--RMGIEILSFTIKDVYDKVDYLSSLGK 134 (143)
T ss_dssp HHHHHH-THHHHHHHHHHHHHHHHT--TTTEEEEEEECCCEECTTCHHHHHCC
T ss_pred HHHHHh-CHHHHHHHHHHHHHHHHH--HhCeEEEEEEEEecCCcHHHHHHHHH
Confidence 999995 899999999999999999 99999999999999999999999753
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=28.25 E-value=13 Score=19.54 Aligned_cols=18 Identities=17% Similarity=0.061 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhceE
Q psy8926 7 VGIVSLFSLLLVFNYSFH 24 (263)
Q Consensus 7 i~~~~~~~~~~l~~~~~~ 24 (263)
-.|.++++++.+++++++
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 346677777777787753
No 3
>d2vjva1 d.58.57.1 (A:6-130) ISHP608 transposase {Helicobacter pylori [TaxId: 210]}
Probab=10.39 E-value=1.5e+02 Score=19.68 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEee
Q psy8926 142 DQIDENLKTALQRELNEMAPGLFIQAVRVT 171 (263)
Q Consensus 142 ~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~ 171 (263)
+++.+.+.+.+.+.++ .+|++|..+.+.
T Consensus 29 ~~v~~~l~~~i~~~~~--~~~~~i~~~~~~ 56 (125)
T d2vjva1 29 GAVEMRLKEIIQEVAK--ELRVEIIEMQTD 56 (125)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHh--hcCceeeecccc
Confidence 4677788888888888 889999998864
No 4
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.08 E-value=87 Score=20.50 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=25.9
Q ss_pred CCceeEEcCccceeEEeeeeEEEeecCCccccCCCCcEEE
Q psy8926 46 GPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIY 85 (263)
Q Consensus 46 ~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~ 85 (263)
..+.+.+||+ +++..+-.|-.-+...+.++.+.||...-
T Consensus 51 ~~~~~~~w~~-~~i~~v~~Rr~ll~~~alEif~~~~~s~~ 89 (110)
T d1t77a2 51 TEGLHGKWLF-TEIRSIFSRRYLLQNTALEIFMANRVAVM 89 (110)
T ss_dssp CCCTTCEEEG-GGEEEEEEEEETTEEEEEEEEETTSCEEE
T ss_pred ccccceEEeH-HHHHHHHhhhhcCCceEEEEEEcCCcEEE
Confidence 4456678887 77766655554444455677889998763
No 5
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.00 E-value=1.3e+02 Score=19.96 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEEeeCCCCCh
Q psy8926 146 ENLKTALQRELNEMAPGLFIQAVRVTKPKIPE 177 (263)
Q Consensus 146 ~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~ 177 (263)
+.+.+.+.+.+. ..|+++.-+.+.+.+.++
T Consensus 18 e~~A~~i~~~l~--~~g~~v~~~~~~~~~~~~ 47 (148)
T d1vmea1 18 ENVMKKAIDSLK--EKGFTPVVYKFSDEERPA 47 (148)
T ss_dssp HHHHHHHHHHHH--HTTCEEEEEEECSSCCCC
T ss_pred HHHHHHHHHHHH--hCCCeEEEEecccccccc
Confidence 345555555565 567777777777666553
No 6
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}
Probab=9.97 E-value=71 Score=23.00 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=7.7
Q ss_pred eeEEcCccceeEEee
Q psy8926 49 FHAMIPFITTFRHVQ 63 (263)
Q Consensus 49 lhf~~P~i~~v~~~d 63 (263)
||+..|.++++..||
T Consensus 150 LHvYspP~~~c~~yd 164 (186)
T d3elna1 150 LHLYSPPFDTCHAFD 164 (186)
T ss_dssp EEEEESCCSEEEEEC
T ss_pred EEEeCCChhhceeee
Confidence 455555555554444
No 7
>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}
Probab=8.73 E-value=95 Score=21.00 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=7.2
Q ss_pred CCeEEEEEEeeCCCC
Q psy8926 161 PGLFIQAVRVTKPKI 175 (263)
Q Consensus 161 ~GI~V~~v~I~~i~~ 175 (263)
.|+++.-..+.++++
T Consensus 28 ~g~~v~~~~~~~~~~ 42 (147)
T d1f4pa_ 28 AGYEVDSRDAASVEA 42 (147)
T ss_dssp HTCEEEEEEGGGCCS
T ss_pred CCCeEEEEeccccch
Confidence 355555555544443
No 8
>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177 {Deinococcus radiodurans [TaxId: 1299]}
Probab=8.22 E-value=1.8e+02 Score=19.32 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEee
Q psy8926 142 DQIDENLKTALQRELNEMAPGLFIQAVRVT 171 (263)
Q Consensus 142 ~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~ 171 (263)
+++.+.+.+.+.+.++ .+|+++..+.+.
T Consensus 28 ~~i~~~l~~~i~~~~~--~~~~~i~~~~~~ 55 (130)
T d2fyxa1 28 DEVADGLKDILRDIAT--QNGLELVALEVM 55 (130)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHH--hcCcceeecccc
Confidence 4677788888888888 889999988764
No 9
>d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]}
Probab=8.15 E-value=2.8e+02 Score=18.18 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=20.0
Q ss_pred eCCCCChHHHHHHHHHHHHHHHHHHH
Q psy8926 171 TKPKIPETIRKNYELMEAEKTKLLIS 196 (263)
Q Consensus 171 ~~i~~p~~v~~a~~~~~aer~~~~~a 196 (263)
.+...|+++.+.+..|.+.|++.+.|
T Consensus 41 Gd~~IP~~Vi~~l~~m~~~R~~~l~a 66 (120)
T d1s4ka_ 41 GDIPISPEIIARLKEMKARRQRRINA 66 (120)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999888888777765433
No 10
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.99 E-value=1.7e+02 Score=15.66 Aligned_cols=18 Identities=6% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy8926 5 LLVGIVSLFSLLLVFNYS 22 (263)
Q Consensus 5 ~~i~~~~~~~~~~l~~~~ 22 (263)
|..++++++++.+-+++|
T Consensus 25 ~~~i~~i~~liflAi~ns 42 (42)
T d1m56d_ 25 WAAVVIVAALIFLALANA 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcC
Done!