RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8926
(263 letters)
>gnl|CDD|239500 cd03406, Band_7_3, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 280
Score = 425 bits (1095), Expect = e-152
Identities = 181/228 (79%), Positives = 206/228 (90%)
Query: 19 FNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGT 78
+ + HKIEEGHVGVY+RGGALL++ SGPGFH M+PFITT++ VQVTLQTDEVKNVPCGT
Sbjct: 1 LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGT 60
Query: 79 SGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYI 138
SGGVMIYFDRIEVVN L SVYDIVKNYTADYDK LIFNK+HHELNQFCS+H L EVYI
Sbjct: 61 SGGVMIYFDRIEVVNFLIPDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYI 120
Query: 139 DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQ 198
DLFDQIDENLK ALQ++L MAPGL IQAVRVTKPKIPE IR+NYELMEAEKTKLLI+IQ
Sbjct: 121 DLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNYELMEAEKTKLLIAIQ 180
Query: 199 HQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
QKVVEK+AETERK+AVIEAEK AQ+AKI + QKVME+E+++R+++IE
Sbjct: 181 KQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIE 228
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues. prohibitin homologues.
Length = 160
Score = 101 bits (253), Expect = 1e-26
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 7/166 (4%)
Query: 22 SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGG 81
+ + EG GV R G +L + GPG H +IPFI + V + QTD+V T
Sbjct: 2 AIKVVGEGERGVVERLGRVL-RVLGPGLHFLIPFIDDVKKVDLRAQTDDVPPQETITKDN 60
Query: 82 VMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 141
V + D VV + + + + ADY A+I L L E+ D
Sbjct: 61 VKVSVDA--VVYYRVLDPLRAVYRVLDADY--AVIEQLAQTTLRSVIGKRTLDELLTDQR 116
Query: 142 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELME 187
++I EN++ L A G+ ++ V + ++PE I++ E +
Sbjct: 117 EKISENIREELNEAAE--AWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family. This family has
been called SPFH, Band 7 or PHB domain. Recent
phylogenetic analysis has shown this domain to be a
slipin or Stomatin-like integral membrane domain
conserved from protozoa to mammals.
Length = 177
Score = 76.6 bits (189), Expect = 3e-17
Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 18/193 (9%)
Query: 24 HKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKN-VPCGTSGGV 82
+ G VGV R G + S + GPG H +PFI T V LQT EV + T GV
Sbjct: 1 TIVPPGEVGVVTRFGKV-SRVLGPGLHFKLPFIQTITVVDTRLQTLEVTVDITVLTKDGV 59
Query: 83 MIYFDRIEVVNVLSVSSVYDIVKNYT-ADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 141
+ ++V V +V NYT + + L+ V L + + + L E+ +
Sbjct: 60 PV---NVDVTVQYRVEDPAKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNR- 115
Query: 142 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQK 201
++I + +K ALQ EL + GL I+ V++T P I + E +A Q+
Sbjct: 116 EEIAQEVKEALQEELEKY--GLEIEDVQITDIDPPPEIAEAIEEKQA---------AEQE 164
Query: 202 VVEKDAETERKRA 214
E + E A
Sbjct: 165 AEEAEIERAEAEA 177
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 52.8 bits (127), Expect = 4e-08
Identities = 56/257 (21%), Positives = 95/257 (36%), Gaps = 27/257 (10%)
Query: 5 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 64
L++ I+ L L+++ S ++EG GV R G T+ PG H IPF V V
Sbjct: 3 LILIIILLVILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVV 62
Query: 65 TLQTDEV-----KNVPCGTSGGVMIYFDRIEVVNVLSVSS--VYDIVKNYTA-DYDKALI 116
+ E T V+ V+V +V V D K + +A +
Sbjct: 63 RVDLRERTLDVGPPQEVITKDNVI--------VSVDAVVQYRVTDPQKAVYNVENAEAAL 114
Query: 117 FNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIP 176
V L L E+ + +I+ ++ L + G+ + V + P
Sbjct: 115 RQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPW--GIKVVDVEIKDIDPP 172
Query: 177 ETIRKNYEL-MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQI--AKIQYEQKV 233
E ++ E M AE+ K +++E + E + E E EA I A+ + E +V
Sbjct: 173 EEVQAAMEKQMAAERDKR------AEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEV 226
Query: 234 MEQESKQRVAKIEGKYS 250
+ + I
Sbjct: 227 IARAEADAAKIIAAALR 243
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like
proteins. This group contains proteins similar to
stomatin, prohibitin, flotillin, HlfK/C and podicin.
Many of these band 7 domain-containing proteins are
lipid raft-associated. Individual proteins of this band
7 domain family may cluster to form membrane
microdomains which may in turn recruit multiprotein
complexes. Microdomains formed from flotillin proteins
may in addition be dynamic units with their own
regulatory functions. Flotillins have been implicated
in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 121
Score = 49.7 bits (119), Expect = 6e-08
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 65 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 124
QT +V T V + R++ V V + N D+ + L
Sbjct: 5 RRQTLDVPPQEVLTKDNVPV---RVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSAL 61
Query: 125 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 184
L E+ D D+I ++ ALQ +L++ G+ + VR+ PE +++ E
Sbjct: 62 RSVIGKMTLDELLED-RDEIAAEVREALQEDLDKY--GIEVVDVRIKDIDPPEEVQEAME 118
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflC is an integral membrane protein
which may localize to the plasma membrane. HflC
associates with another band 7 family member (HflK) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection.
Length = 242
Score = 49.1 bits (118), Expect = 4e-07
Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 33/219 (15%)
Query: 26 IEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIY 85
++EG V R G ++ ++ PG H +PFI + + T + T +
Sbjct: 4 VDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLI 63
Query: 86 FD-----RIEVVNVLSVSSVYDIVKNYTA-----DYDKALIFNKVHHELNQFCSIHNLHE 135
D RI D ++ Y A + + V+ L L E
Sbjct: 64 VDAYAKWRIT-----------DPLRFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIE 112
Query: 136 VYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKN-YELMEAEKTKLL 194
+ ++ E ++ A+ E E+ G+ + VR+ + +PE + ++ Y M AE+ +
Sbjct: 113 LVSGERGELMEEIRRAVAEEAKEL--GIEVVDVRIKRIDLPEEVSESVYRRMRAERER-- 168
Query: 195 ISIQH-----QKVVEKDAETERKRAVI--EAEKEAQIAK 226
I+ + ++ A+ +R+R VI EA +EAQ +
Sbjct: 169 IAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIR 207
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of
the band 7 domain of flotillin (reggie) like proteins
similar to stomatin and podicin (two lipid
raft-associated integral membrane proteins). Individual
proteins of this band 7 domain family may cluster to
form membrane microdomains which may in turn recruit
multiprotein complexes. Stomatin is widely expressed
and, highly expressed in red blood cells. It localizes
predominantly to the plasma membrane and to
intracellular vesicles of the endocytic pathway, where
it is present in higher order homo-oligomeric complexes
(of between 9 and 12 monomers). Stomatin interacts with
and regulates members of the degenerin/epithelia Na+
channel family in mechanosensory cells of Caenorhabditis
elegans and vertebrate neurons and, is implicated in
trafficking of Glut1 glucose transporters. Prohibitin is
a mitochondrial inner-membrane protein hypothesized to
act as a chaperone for the stabilization of
mitochondrial proteins. Podicin localizes to the plasma
membrane of podocyte foot processes and, is found in
higher order oligomers. Podocin plays a role in
regulating glomerular permeability. Mutations in the
podicin gene give rise to autosomal recessive steroid
resistant nephritic syndrome. This group also contains
proteins similar to three Caenorhabditis elegans
proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the
unc-1 and unc-24 genes result in abnormal motion and
altered patterns of sensitivity to volatile anesthetics.
MEC-2 and UNC-24 proteins interact with MEC-4 which is
part of the degenerin channel complex required for
response to gentle body touch.
Length = 215
Score = 46.4 bits (111), Expect = 3e-06
Identities = 57/242 (23%), Positives = 95/242 (39%), Gaps = 45/242 (18%)
Query: 26 IEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT-LQTDEVKNVPCGTSGGVMI 84
+ + GV R G T+ GPG H +IPFI + Q +V T V +
Sbjct: 1 VPQYERGVVERLGKYHRTL-GPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTV 59
Query: 85 YFDRI---EVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYI--- 138
D + VV+ V +VY + DY A+ +L Q L V I
Sbjct: 60 RVDAVLYYRVVDP--VKAVYGV-----EDYRYAIS------QLAQT----TLRSV-IGKM 101
Query: 139 ---DLF---DQIDENLKTALQRELNEMAP-GLFIQAVRVTKPKIPETIRKNYEL-MEAEK 190
+L ++I+ L L P G+ ++ V + +P+ I++ EAE+
Sbjct: 102 ELDELLSEREEINAELVEILDE---ATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAER 158
Query: 191 TKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYS 250
K K++E + E + + EA K+A I + + E E+ + +AK
Sbjct: 159 EKR------AKIIEAEGERQAAILLAEAAKQAAINPAALQLR--ELETLEEIAKEAASTV 210
Query: 251 LF 252
+F
Sbjct: 211 VF 212
>gnl|CDD|233644 TIGR01932, hflC, HflC protein. HflK and HflC are paralogs encoded
by tandem genes in Proteobacteria, spirochetes, and some
other bacterial lineages. The HflKC complex is anchored
in the membrane and exposed to the periplasm. The
complex is not active as a protease, but rather binds to
and appears to modulate the ATP-dependent protease FtsH.
The overall function of HflKC is not fully described
[Protein fate, Degradation of proteins, peptides, and
glycopeptides, Regulatory functions, Protein
interactions].
Length = 317
Score = 45.2 bits (107), Expect = 1e-05
Identities = 56/275 (20%), Positives = 97/275 (35%), Gaps = 42/275 (15%)
Query: 7 VGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLST------ISGPGFHAMIPFITTFR 60
+GIV + L++V F I+EG G+ R G +L + PG H IPFI +
Sbjct: 4 IGIVVIVLLIVVLFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVK 63
Query: 61 HVQVTLQT--DEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFN 118
+QT +P T I D + Y T + LI
Sbjct: 64 IFDAKIQTMDGRPDRIP--TKEKKDIIIDTYIRWRIEDFKKYYLSTGGGTISAAEVLIKR 121
Query: 119 KVHHELNQFCSIHNLHEVYIDLFDQID---------------------ENLKTALQRELN 157
K+ L + L E+ DQ+D + L RE++
Sbjct: 122 KIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREIS 181
Query: 158 EMAP------GLFIQAVRVTKPKIPETIRKN-YELMEAEKTKLLISIQHQKVVEKDAETE 210
++A G+ + VR+ K + + ++ Y M +E+ I + + + E
Sbjct: 182 QIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSERE----QIARMHRSQGEEKAE 237
Query: 211 RKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 245
E E +++ ++++ E AKI
Sbjct: 238 EILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKI 272
>gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional.
Length = 334
Score = 39.0 bits (91), Expect = 0.001
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 9 IVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALL------STISGPGFHAMIPFITTFRHV 62
I + +L+V S ++EG G+ R G +L + PG H IPFI T + +
Sbjct: 6 IAIIIIVLVVLYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKML 65
Query: 63 QVTLQT 68
+QT
Sbjct: 66 DARIQT 71
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 35.1 bits (81), Expect = 0.035
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 179 IRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQES 238
IR E +EA L +HQ V + ER + I+ + E + K + +E
Sbjct: 357 IRSELEEVEAR-LDALTG-KHQDV---QRKYERLKQKIKEQLERDLEKNNERLAAIREEK 411
Query: 239 KQRVAKIEGKYS 250
++ A IE
Sbjct: 412 DRQKAAIEEDLQ 423
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflK is an integral membrane protein
which may localize to the plasma membrane. HflK
associates with another band 7 family member (HflC) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection.
Length = 266
Score = 34.1 bits (79), Expect = 0.051
Identities = 52/273 (19%), Positives = 101/273 (36%), Gaps = 61/273 (22%)
Query: 9 IVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPF-ITTFRHVQVTLQ 67
+++ ++L F+ ++ G GV R G S PG H +P+ I V V
Sbjct: 1 LIAALLVILWLLSGFYIVQPGERGVVLRFGKY-SRTVEPGLHWKLPYPIEVVEVVPVFQL 59
Query: 68 TDE-----VKNVPCGTSGGVMIYFDRIEVVNVLSVS-SVYDIVKNYTADYDKALIFNKVH 121
V +V +M+ D N++ V +V + + +FN
Sbjct: 60 RSVGIPVRVGSVRSVPGESLMLTGDE----NIVDVEFAVQYRISD-----PYDYLFNVRD 110
Query: 122 HE----------LNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVT 171
E + + L +V + ++I ++++ LQ L+ G+ I V +
Sbjct: 111 PEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQ 170
Query: 172 KPKIPETIRKNYELMEAEKTKLLISIQHQKVVE--KD---AETERKRAVIEAEKEAQ--I 224
PE +V + D A +R+R + EAE A +
Sbjct: 171 DADPPE-----------------------EVQDAFDDVNKARQDRERLINEAEAYANEVV 207
Query: 225 AKIQYEQKVMEQESK----QRVAKIEGKYSLFD 253
K + E + QE++ + +A+ +G+ + F+
Sbjct: 208 PKARGEAARIIQEAEAYKEEVIAEAQGEAARFE 240
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 32.4 bits (74), Expect = 0.16
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 198 QHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQ---KVMEQESKQRVAKI 245
+ QK++E+ + ER++ EAE ++AK +YE+ + +Q +KQR K
Sbjct: 103 KLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKH 153
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 32.3 bits (74), Expect = 0.17
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 180 RKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEA------QIAKIQYEQKV 233
+ E ++ ++ LL +++A+ ER+R + EA +EA ++ EQ
Sbjct: 63 EEKNEELDQQREVLL------TKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAA 116
Query: 234 MEQESKQRV 242
+ E ++R
Sbjct: 117 LSDELRRRT 125
>gnl|CDD|181551 PRK08769, PRK08769, DNA polymerase III subunit delta'; Validated.
Length = 319
Score = 32.6 bits (74), Expect = 0.19
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 136 VYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAE---KTK 192
V +D D I+ AL + L E +PG ++ + ++P TIR + +E + +
Sbjct: 117 VIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHE 176
Query: 193 LLISIQHQKVVEKDAE 208
L + Q V E+ A+
Sbjct: 177 ALAWLLAQGVSERAAQ 192
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 32.1 bits (73), Expect = 0.28
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 197 IQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGK 248
Q Q+ K AE +RK+ + +E Q + ++++ + E K+R+A E K
Sbjct: 67 QQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLE-KERLAAQEQK 117
>gnl|CDD|211667 TIGR01530, nadN, NAD pyrophosphatase/5'-nucleotidase NadN. This
model describes NadN of Haemophilus influenzae and a
small number of close homologs in pathogenic,
Gram-negative bacteria. NadN is a periplasmic enzyme
that cleaves NAD (nicotinamide adenine dinucleotide) to
NMN (nicotinamide mononucleotide) and AMP. The NMN must
be converted by a 5'-nucleotidase to nicotinamide
riboside for import. NadN belongs a large family of
5'-nucleotidases and has NMN 5'-nucleotidase activity
for NMN, AMP, etc [Transport and binding proteins,
Other, Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 545
Score = 31.9 bits (72), Expect = 0.33
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 180 RKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIE---AEKEAQIAKI 227
K YEL E+ K L +++ K + D + ++IE +EK+ +I
Sbjct: 295 GKWYELTGDERKKALDTLKSMKSISLDDHDAKTDSLIEKYKSEKDRLAQEI 345
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 31.7 bits (73), Expect = 0.35
Identities = 10/36 (27%), Positives = 26/36 (72%)
Query: 204 EKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESK 239
+K+AE +K A++EA++E + ++E+++ E+ ++
Sbjct: 48 KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE 83
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 31.6 bits (71), Expect = 0.43
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 166 QAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIA 225
+ V K K E +K EL +AE+ + + E E K+ EA+K +
Sbjct: 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKI-----KAAEEAKKAEEDKKKAEEAKKAEEDE 1687
Query: 226 KIQYEQKVMEQESKQRVAKIEGK 248
K E E E ++ +++ K
Sbjct: 1688 KKAAEALKKEAEEAKKAEELKKK 1710
Score = 30.1 bits (67), Expect = 1.5
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 172 KPKIPETIRKNYELMEAEKTKLLISIQHQKVVE-KDAETERKRAVIEAEKEAQIAKIQYE 230
K ++ E +AE+ K + + +K E K AE E K EA+KEA+ K + E
Sbjct: 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
Query: 231 QKVMEQESKQRVAKIE 246
+ ++E K+++A ++
Sbjct: 1748 EAKKDEEEKKKIAHLK 1763
Score = 29.7 bits (66), Expect = 2.2
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 177 ETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQ 236
E +K E +AE+ K + +K E E K+ EA+K+A AK + E+
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAK-KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAA 1345
Query: 237 ESKQRVAKIEGK 248
E+ + A+
Sbjct: 1346 EAAKAEAEAAAD 1357
Score = 27.4 bits (60), Expect = 9.6
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 187 EAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
EA K L + +K ++ + E K+ EA+K+A+ AK E K +E+K++ +
Sbjct: 1276 EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAK 1335
Query: 247 GK 248
K
Sbjct: 1336 KK 1337
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin. A subgroup of the
band 7 domain of flotillin (reggie) like proteins. This
subgroup group includes proteins similar to prohibitin
(a lipid raft-associated integral membrane protein).
Individual proteins of this band 7 domain family may
cluster to form membrane microdomains which may in turn
recruit multiprotein complexes. These microdomains in
addition to being stable scaffolds may also be also
dynamic units with their own regulatory functions.
Prohibitin is a mitochondrial inner-membrane protein
which may act as a chaperone for the stabilization of
mitochondrial proteins. Human prohibitin forms a
heter-oligomeric complex with Bap-37 (prohibitin 2, a
band 7 domain carrying homologue). This complex may
protect non-assembled membrane proteins against
proteolysis by the m-AAA protease. Prohibitin and Bap-37
yeast homologues have been implicated in yeast longevity
and, in the maintenance of mitochondrial morphology.
Length = 196
Score = 30.6 bits (70), Expect = 0.47
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 22 SFHKIEEGHVGVYF-RGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSG 80
S + ++ GH V F RGG + + G G H IP+ V + + G+
Sbjct: 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNI-ESTTGSKD 59
Query: 81 GVMIYFDRIEVVNVLS---VSSVYDIVKNYTADYD 112
M+ + VL S + I +N DYD
Sbjct: 60 LQMVNI----TLRVLFRPDASQLPRIYQNLGEDYD 90
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 30.6 bits (70), Expect = 0.50
Identities = 10/36 (27%), Positives = 25/36 (69%)
Query: 204 EKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESK 239
+K+AE +K A++EA++E + + E+++ E+ ++
Sbjct: 44 KKEAEALKKEALLEAKEEIHKLRAEAERELKERRNE 79
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 30.8 bits (70), Expect = 0.69
Identities = 38/238 (15%), Positives = 77/238 (32%), Gaps = 23/238 (9%)
Query: 23 FHKIEEGHVGVYFRGGALLSTISGPGFH-------AMIPFITTFRHVQVTLQTDEVKNVP 75
+EE + +++S+++ IP + +
Sbjct: 47 VDYLEEEDPTLRDPQISVVSSVTKLSKGPKDEPKQVKIPRQSGLSEEVAEAEAKATSVAA 106
Query: 76 CGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHE 135
T+ E+V L + + + + L+ + ++L NL +
Sbjct: 107 EATTPK-----SIQELVEALEELLEELLKETASDPVVQELV--SIFNDLIDSIKEDNLKD 159
Query: 136 VYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLI 195
L E L L ++L E+ + R K K E + K E + A
Sbjct: 160 DLESLIASAKEEL-DQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEA 218
Query: 196 SIQHQKVVEKDAETERKRAV--------IEAEKEAQIAKIQYEQKVMEQESKQRVAKI 245
+++ Q +E + E E R +E + EA K++ E + E ++ K
Sbjct: 219 ALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQREFNKE 276
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 30.7 bits (70), Expect = 0.74
Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 21/131 (16%)
Query: 143 QIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAE---------KTKL 193
+I E L T+ ++ E+ P F+ + P++ + EL E E TK
Sbjct: 354 KIAEKLHTSKRKVRREVLP--FLSIIFKHNPELAARLAAFLELTEEEIEFLTGSKKATKK 411
Query: 194 LISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKY---- 249
+ I + +++ E + K+ A K+ + + + ++K E++ ++ E K
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Query: 250 ------SLFDF 254
+LFDF
Sbjct: 472 KKKKQATLFDF 482
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 28.6 bits (64), Expect = 0.76
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 198 QHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQK 232
+K EK E E + +IE K A K Q +Q+
Sbjct: 31 SLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQE 65
>gnl|CDD|151803 pfam11362, DUF3161, Protein of unknown function (DUF3161). This
eukaryotic family of proteins has no known function.
Length = 90
Score = 28.7 bits (64), Expect = 1.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 57 TTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN 93
T +QV QT V+ + T G YF ++V+N
Sbjct: 54 TLQDGLQVFGQTGNVRKIAALTRYGCNSYFKLVKVIN 90
>gnl|CDD|184697 PRK14475, PRK14475, F0F1 ATP synthase subunit B; Provisional.
Length = 167
Score = 29.5 bits (66), Expect = 1.1
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 160 APGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAE 219
P A+ KI + + L E LL ++ ++ E ER+ A + A
Sbjct: 31 LPKALAGALDAYAAKIQAELDEAQRL-REEAQALLADVKAER-----EEAERQAAAMLAA 84
Query: 220 KEAQIAKIQYEQKV-MEQESKQRVAKIEGK 248
+A +++ E K +E++ K+R E K
Sbjct: 85 AKADARRMEAEAKEKLEEQIKRRAEMAERK 114
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 29.7 bits (67), Expect = 1.1
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 200 QKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 245
+ E+ E E +R I+A+ + K ++K + QE + AK
Sbjct: 151 EATHERLKEREIRRKKIQAKARKRKEKK--KEKELTQEERLAEAKE 194
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 30.1 bits (68), Expect = 1.2
Identities = 22/130 (16%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 131 HNLHEVYIDLFD--------------QIDENLKTALQRELNEMAPGLFIQAVRVTKPKIP 176
LHE + E+ K++ + L++ + ++ T+ K+P
Sbjct: 206 EKLHEKFQKQLAEKKKSKRPTVPEPFNFQESHKSSSRTYLDQENISAGEENLKPTRRKLP 265
Query: 177 ETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQ 236
+ +K L++ +T+ ++ +K+ E +K+ A K Q + + +++
Sbjct: 266 PSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQE 325
Query: 237 ESKQRVAKIE 246
E K+++AK+
Sbjct: 326 ERKEQLAKLR 335
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 30.3 bits (69), Expect = 1.2
Identities = 11/36 (30%), Positives = 26/36 (72%)
Query: 204 EKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESK 239
+K+AET +K A++EA++E + + E+++ E+ ++
Sbjct: 42 KKEAETLKKEALLEAKEEVHKLRAELERELKERRNE 77
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 30.2 bits (68), Expect = 1.3
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 177 ETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQ 236
+ E+ + K + K++ + E E E +EA+ A+I EQ + E+
Sbjct: 244 DAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEE 303
Query: 237 ESKQRVA 243
+++
Sbjct: 304 KAQAEQE 310
>gnl|CDD|205436 pfam13256, DUF4047, Domain of unknown function (DUF4047). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria, and is approximately
130 amino acids in length. There are two conserved
sequence motifs: TEA and FPKT.
Length = 123
Score = 28.7 bits (64), Expect = 1.5
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 165 IQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKR----AVIEAEK 220
+QA T P+TI L E K QH+KV+ + E +K ++ E+
Sbjct: 15 VQASISTAIVFPKTI---DTLKEQAK-------QHEKVILHEYEGMKKEVKATSIEVLEQ 64
Query: 221 EAQIAKIQYEQKVMEQESKQRV-AKIEGKY 249
K Q E+ +E+E+ Q++ +IE Y
Sbjct: 65 RLVSWKEQREKVAVEREALQKIYTEIEDYY 94
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.5 bits (66), Expect = 1.9
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 181 KNYELMEAEKTKLLISIQHQKVVEKD-----AETERKRAVIEAEKEAQIAKIQYEQKVME 235
E + E+ + + +K E AE + +A EA+K+A+ A E+ +
Sbjct: 127 AQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAK 186
Query: 236 QESKQRVAKIE 246
E+ K E
Sbjct: 187 AEAAAAKKKAE 197
Score = 28.0 bits (62), Expect = 6.1
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 197 IQHQKVVEKDAETERK---RAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
IQ Q+ K E +RK V E K Q A EQ+ ++Q K+R+ E
Sbjct: 67 IQSQQSSAKKGEQQRKKKEEQVAEELKPKQAA----EQERLKQLEKERLKAQE 115
>gnl|CDD|100810 PRK01194, PRK01194, V-type ATP synthase subunit E; Provisional.
Length = 185
Score = 28.7 bits (64), Expect = 2.0
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 198 QHQKVVEKDAETERKRAVIEAEKEAQIAKIQ-YEQKVMEQESKQRVAKIEGK 248
+ +K E + E ++ +E E +++I I+ Y +K M E + I K
Sbjct: 14 REEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDK 65
>gnl|CDD|184150 PRK13569, PRK13569, anthranilate synthase component I; Provisional.
Length = 506
Score = 29.6 bits (67), Expect = 2.0
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 189 EKTKLLISIQHQKVVEKDAETERKRAVIEAEKE-----AQIAKIQYEQKVMEQESKQRVA 243
+TK L I + ++ ++ E E+ EA+ E ++A+ + E++++ +R
Sbjct: 160 HETKELHFIHYVRLNGQETEEEKIEKYKEAQAEIETLIEKLARRKAEKELLLPADSERTV 219
Query: 244 KIEGKYSLFD 253
EG S ++
Sbjct: 220 SFEGVTSNYE 229
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 28.9 bits (65), Expect = 2.0
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 177 ETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEK---EAQIAKIQYEQKV 233
+ R EL E E+T L + + ++ E+ E+K +E E E + A + E++
Sbjct: 20 DMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERER 79
Query: 234 MEQESKQRVAKIE 246
+E E + A++
Sbjct: 80 LEAEVDEATAEVA 92
>gnl|CDD|184061 PRK13454, PRK13454, F0F1 ATP synthase subunit B'; Provisional.
Length = 181
Score = 28.6 bits (64), Expect = 2.2
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 198 QHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
+ Q++V AET RA I+AE + IAK E ES++R+A+I
Sbjct: 98 EAQRIV---AET---RAEIQAELDVAIAKADAEIAAKAAESEKRIAEIR 140
>gnl|CDD|169691 PRK09173, PRK09173, F0F1 ATP synthase subunit B; Validated.
Length = 159
Score = 28.6 bits (64), Expect = 2.5
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 207 AETERKRAVIEAEKEAQ--IAKIQYEQKVMEQESKQR 241
AE +RKR EAEKEA +A + E + + E+K++
Sbjct: 57 AEYQRKRK--EAEKEAADIVAAAEREAEALTAEAKRK 91
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 29.0 bits (65), Expect = 2.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 187 EAEKTKLLISIQHQKVVE---KDAETERK-RAVIEAEKEAQIAKIQYEQKVMEQESKQRV 242
AE + +K E K AE E K +A EA+K+A AK + E + + +
Sbjct: 129 AAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAK 188
Query: 243 AKIE 246
AK E
Sbjct: 189 AKAE 192
Score = 27.9 bits (62), Expect = 5.2
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 165 IQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQI 224
IQAV V + + + + + K + QK +E+ AE K+ E ++ ++
Sbjct: 38 IQAVLVDPGAVAQQANRIQQQKKPAAKK---EQERQKKLEQQAEEAEKQRAAEQARQKEL 94
Query: 225 AKIQYEQKVMEQESKQRVAKIEGK 248
+ +K +Q + E +
Sbjct: 95 EQRAAAEKAAKQAEQAAKQAEEKQ 118
Score = 27.9 bits (62), Expect = 5.9
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 166 QAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIA 225
Q + K E +K + E + + QK +E +R A A++ Q A
Sbjct: 57 QQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELE-----QRAAAEKAAKQAEQAA 111
Query: 226 KIQYEQKVMEQESKQRVAK 244
K E++ +E+K + A
Sbjct: 112 KQAEEKQKQAEEAKAKQAA 130
>gnl|CDD|221648 pfam12579, DUF3755, Protein of unknown function (DUF3755). This
domain family is found in eukaryotes, and is
approximately 40 amino acids in length. There is a
single completely conserved residue N that may be
functionally important.
Length = 35
Score = 26.1 bits (58), Expect = 2.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 138 IDLFDQIDENLKTALQRELNEMAPGLFIQ 166
IDLF + +N+ L ++ EM PG+ Q
Sbjct: 9 IDLFCRTRDNILAILN-DMREM-PGIMSQ 35
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 28.7 bits (65), Expect = 3.5
Identities = 9/48 (18%), Positives = 26/48 (54%)
Query: 197 IQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 244
I+ +K ++ + + E +R E+E A + E++ +++ ++R +
Sbjct: 26 IEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGR 73
Score = 28.0 bits (63), Expect = 5.4
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 184 ELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVA 243
E AEK ++ ++H++ +E+ E + +R E E+E + E + + +E +R A
Sbjct: 275 EQENAEKRRMKR-LEHRRELEQQIEEKEERRAAEREEELE------EGERLREEEAERQA 327
Query: 244 KIE 246
+IE
Sbjct: 328 RIE 330
Score = 27.6 bits (62), Expect = 6.7
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 204 EKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQR 241
E++ E E +R + EKE ++A+++ +Q+ E E ++
Sbjct: 164 EREEEREAERRERKEEKEREVARLRAQQEEAEDEREEL 201
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 28.8 bits (65), Expect = 3.7
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 16/74 (21%)
Query: 187 EAEKTKLL--------ISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYE-QKVM--- 234
E ++TKLL + Q E AE E + IEAE E + A+++ + ++
Sbjct: 695 EEQRTKLLELQAESAAVESSGQSRAEALAEAEARL--IEAEAEVEQAELRAKALRIEAEA 752
Query: 235 --EQESKQRVAKIE 246
E+ K++ ++E
Sbjct: 753 ELEKLRKRQELELE 766
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 28.5 bits (65), Expect = 4.3
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 5/29 (17%)
Query: 102 DIVKNYTADYDKALIFNKVHHELNQFCSI 130
+I++ Y +YD F+KV+ +L+ FCS+
Sbjct: 688 EILEAY-ENYD----FHKVYQKLHNFCSV 711
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 27.2 bits (61), Expect = 4.3
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 185 LMEAEKTKLLISIQHQKVVE--KDAETER-KRAVIEAEKEAQIAKIQYEQKVMEQESK 239
L++AEK ++V + +R K+A EAEKE + + Q E + E E++
Sbjct: 9 LLQAEKEA-------AEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAE 59
>gnl|CDD|214613 smart00315, RGS, Regulator of G protein signalling domain. RGS
family members are GTPase-activating proteins for
heterotrimeric G-protein alpha-subunits.
Length = 118
Score = 27.2 bits (61), Expect = 4.5
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 101 YDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMA 160
+ V+ + D K ++F S + EV +D + E ++ L E E
Sbjct: 31 WLAVEEFKKAEDDEERIAKAREIYDKFLSPNAPKEVNLD--SDLREKIEENL--ESEEPP 86
Query: 161 PGLFIQAVRVTKPKIPETIRKNYELME 187
P LF +A R YEL+E
Sbjct: 87 PDLFDEAQREV-----------YELLE 102
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 28.4 bits (64), Expect = 4.5
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 198 QHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 244
+ + + ERK+ + K + A+ + +K ++ + AK
Sbjct: 398 EEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAK 444
Score = 27.6 bits (62), Expect = 8.3
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 30/92 (32%)
Query: 135 EVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLL 194
E+Y+ L D+ + E ++P AE+ KL
Sbjct: 382 EIYLKLHDKPLLAEGEEEEGENGNLSP--------------------------AERKKLR 415
Query: 195 ISIQHQKVVEKDAETERKRAVIEAEKEAQIAK 226
+ Q+ EK AE E A+K+A+ A
Sbjct: 416 ---KKQRKAEKKAEKEEAEKA-AAKKKAEAAA 443
>gnl|CDD|235999 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.
Length = 140
Score = 27.3 bits (61), Expect = 5.6
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 198 QHQKVV---EKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGK 248
Q Q V+ E +A+ A+ EA+ EAQ A + ++ +EQ+ + +A++E +
Sbjct: 72 QAQAVIAEAEAEADKLAAEALAEAQAEAQ-ASKEKARREIEQQKQAALAQLEQQ 124
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 28.0 bits (63), Expect = 5.6
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 204 EKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEG 247
EKD ++ + +E E +A+++ E +E++ K A I+G
Sbjct: 427 EKDEASKERLEDLEKE----LAELEEEYADLEEQWKAEKAAIQG 466
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 28.2 bits (63), Expect = 5.7
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 177 ETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQ 236
I + K ++ + I+ +EK+ E ++ + + KE + K + EQ++ E
Sbjct: 497 FIIEQAKTFYGEFKEEINVLIEKLSALEKELE-QKNEHLEKLLKEQEKLKKELEQEMEEL 555
Query: 237 ESKQRVAKIE 246
+ ++R K+E
Sbjct: 556 KERERNKKLE 565
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 27.7 bits (62), Expect = 6.5
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 123 ELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKN 182
EL +E +L +IDE LK RE++E IQ + + E + K
Sbjct: 146 ELEDAKKALEENEKLKELKAEIDE-LKKKA-REIHEK-----IQELANEAQEYHEEMIKL 198
Query: 183 YELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRV 242
+E EA++ + H++ VE + + E + Q + E+K+ +K++
Sbjct: 199 FE--EADELRKEADELHEEFVELSKKIDELH---EEFRNLQNELRELEKKIKALRAKEKA 253
Query: 243 AK 244
AK
Sbjct: 254 AK 255
>gnl|CDD|235868 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1151
Score = 27.9 bits (63), Expect = 6.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 232 KVMEQESKQRVAKIEGKYSLFDF 254
K+++ SKQR IEG+ SLFD
Sbjct: 895 KILDSISKQRKKNIEGQISLFDL 917
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 28.1 bits (63), Expect = 6.8
Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 20/127 (15%)
Query: 146 ENLKTALQRELNEMAPGLF--IQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVV 203
+ ++LQ EL + L Q + KI I K E +E E +K+
Sbjct: 687 KRELSSLQSELRRIENRLDELSQELSDASRKI-GEIEKEIEQLEQE---------EEKLK 736
Query: 204 EKDAE-------TERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYSLFDFST 256
E+ E E++ +++E + A+I+ ++ + + + + +E + S
Sbjct: 737 ERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA-LNDLEARLSHSRIPE 795
Query: 257 IRPSLTF 263
I+ L+
Sbjct: 796 IQAELSK 802
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 27.4 bits (61), Expect = 6.9
Identities = 11/60 (18%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 177 ETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQ 236
++I +N + E+ ++ EK+ + E++ + + E+E ++AK + +Q+++++
Sbjct: 79 DSIMRNKRRLTREQE----ELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQEIIDE 134
>gnl|CDD|220417 pfam09812, MRP-L28, Mitochondrial ribosomal protein L28. Members
of this family are components of the mitochondrial large
ribosomal subunit. Mature mitochondrial ribosomes
consist of a small (37S) and a large (54S) subunit. The
37S subunit contains at least 33 different proteins and
1 molecule of RNA (15S). The 54S subunit contains at
least 45 different proteins and 1 molecule of RNA (21S).
Length = 146
Score = 27.0 bits (60), Expect = 7.2
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 131 HNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 180
E Q E + AL EL +P L+ A+ P +R
Sbjct: 84 QQEREAENQQLRQQYEAQQEAL-EELKLESPELYEAAIAPDPGLFPLELR 132
>gnl|CDD|222647 pfam14282, FlxA, FlxA-like protein. This family includes FlxA from
E. coli. The expression of FlxA is regulated by the FliA
sigma factor, a transcription factor specific for class
3 flagellar operons. However FlxA is not required for
flagellar function or formation.
Length = 106
Score = 26.2 bits (58), Expect = 7.5
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 204 EKDAET-ERKRAVIEAE---KEAQIAKIQYEQKVMEQESKQRVAK 244
+ AE ++++ +I+ + +AQIA++Q +Q Q+ +Q +
Sbjct: 43 DLTAEEKQKQQQLIQQQIQMLQAQIAQLQQQQSEEAQQQQQSSIE 87
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial and eukaryotic mitochondrial members. IleRS
catalyzes the transfer of isoleucine to the 3'-end of
its tRNA.
Length = 180
Score = 27.1 bits (61), Expect = 8.0
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 102 DIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYID 139
++ + Y +Y+ F+KV+ LN FC++ +L Y+D
Sbjct: 59 EVREAY-ENYE----FHKVYQALNNFCTV-DLSAFYLD 90
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 26.8 bits (60), Expect = 8.0
Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 188 AEKTKLLISIQHQKVVEKDAETERKRAVIEAEK-EAQIAKIQYEQKVMEQESKQRVAKIE 246
A+ K ++ ++E +A R + + + + A+ + E K +E ++K+ A+ +
Sbjct: 46 AKSIKQHLAELAADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESD 105
Query: 247 G---KYSLFDFSTI 257
++ F +
Sbjct: 106 HALHQHHRFALAVA 119
>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 26.9 bits (60), Expect = 8.1
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 199 HQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKV-----MEQESKQRV--AKIEGK 248
+ E AE + + I AE EA +I +++ +EQ +Q + AK+E K
Sbjct: 15 RARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAK 71
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 27.3 bits (61), Expect = 8.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 204 EKDAETERKRA-VIEAEKEAQIAKIQYEQKVMEQESKQ 240
EK E ER +A EAE+E K + E+++ME + +
Sbjct: 203 EKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERS 240
>gnl|CDD|221041 pfam11241, DUF3043, Protein of unknown function (DUF3043). Some
members in this family of proteins with unknown function
are annotated as membrane proteins. This cannot be
confirmed.
Length = 168
Score = 26.8 bits (60), Expect = 8.6
Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 205 KDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEG 247
++AE R+R ++ +++A K + E+ ++ R A + G
Sbjct: 10 REAEAARRRPLVPEDRKAA-KKAARAARR-ERRARARAAMMAG 50
>gnl|CDD|184695 PRK14471, PRK14471, F0F1 ATP synthase subunit B; Provisional.
Length = 164
Score = 26.7 bits (59), Expect = 9.4
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 165 IQAVRVTKPKIPETIRKNYELMEAE----KTKLLISIQHQKVVEKDAETERKRAVIEAEK 220
+Q ++ ++ + R + + E K K++ + + VE D E+ +A IE+EK
Sbjct: 58 MQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEK 117
Query: 221 EAQIAKIQ 228
A +A+I+
Sbjct: 118 NAAMAEIK 125
>gnl|CDD|216381 pfam01237, Oxysterol_BP, Oxysterol-binding protein.
Length = 335
Score = 27.2 bits (61), Expect = 9.4
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 33/111 (29%)
Query: 150 TALQRELNEMAPGLFIQAVRVTKPKIPET-----------IRKNYELMEAEKTKLLISIQ 198
T LNE+ P L K ++P T +Y+ E EK +L
Sbjct: 244 TKFAIPLNELTPEL--------KEELPPTDSRLRPDQRALEEGDYDEAEEEKLRL----- 290
Query: 199 HQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKY 249
E E +R+R EK + K ++ KV + + + +G Y
Sbjct: 291 -----E---EKQRERRKEREEKG-EEWKPRWFVKVKDPLTGEEDWVYKGGY 332
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 27.3 bits (61), Expect = 9.4
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 32/121 (26%)
Query: 138 IDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISI 197
+DL D++ +L L+R ++P +I E +EAE +
Sbjct: 181 LDLIDRLAGDLTNVLRRRKKS---------------ELPSSILSEIEALEAELKEQSEKY 225
Query: 198 QHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVME---------QESKQRVAKIEGK 248
+ D E E E EAQ + E+K ++ ++++ +IE
Sbjct: 226 E-------DLAQEIAHLRNELE-EAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAA 277
Query: 249 Y 249
Sbjct: 278 R 278
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.379
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,279,232
Number of extensions: 1281597
Number of successful extensions: 1967
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1884
Number of HSP's successfully gapped: 168
Length of query: 263
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 168
Effective length of database: 6,723,972
Effective search space: 1129627296
Effective search space used: 1129627296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)