RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8926
(263 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 47.8 bits (113), Expect = 5e-07
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 24/78 (30%)
Query: 176 PETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVI--EAEKE---------AQI 224
PE+IRK E+ + + E DA ++ +A+K+ Q+
Sbjct: 84 PESIRK-----WREEQRKRLQ-------ELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
Query: 225 AKIQYEQKVMEQE-SKQR 241
K + ++ ++ +Q
Sbjct: 132 EKNKINNRIADKAFYQQP 149
Score = 34.0 bits (77), Expect = 0.027
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 197 IQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK-IEGKY 249
I + ++ E+ RK E+ ++ ++ KVMEQE +++ K +E
Sbjct: 74 IAQADRLTQEPESIRKWR---EEQRKRLQELDAASKVMEQEWREKAKKDLEEWN 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 1e-05
Identities = 31/200 (15%), Positives = 64/200 (32%), Gaps = 60/200 (30%)
Query: 16 LLVFNYS-FHKIEE-----------GH-VGVYFRGGALLSTISGPGFHAMIPFITTFRHV 62
L + + F ++ GH +G Y AL S ++ ++ + V
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEY---AALAS-LAD-----VMSIESLVEVV 1786
Query: 63 QV--TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 120
V G S MI + V S ++ +V+ +V
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE-------------RV 1833
Query: 121 HHELNQFCSI--HNL-HEVYI---DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPK 174
I +N+ ++ Y+ DL L T + LN + +Q + + +
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGDL-----RALDT-VTNVLNFIK----LQKIDII--E 1881
Query: 175 IPETIRKNYELMEAEKTKLL 194
+ +++ +E + L
Sbjct: 1882 LQKSLS-----LEEVEGHLF 1896
Score = 38.9 bits (90), Expect = 0.001
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 36/121 (29%)
Query: 139 DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIP---------ETIRKNYELMEAE 189
D++++ D + K G I + + P + IR+NY M E
Sbjct: 1644 DVWNRADNHFKDTY---------GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 190 KTKLLISIQHQKVVEKDAETERKRAVI-EAEKE-------AQIA-----KIQYEQKVMEQ 236
T + ++ +K+ + E + +EK Q A K +E ++
Sbjct: 1695 -TIVDGKLKTEKIFK--EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE--DLKS 1749
Query: 237 E 237
+
Sbjct: 1750 K 1750
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.005
Identities = 43/267 (16%), Positives = 72/267 (26%), Gaps = 90/267 (33%)
Query: 40 LLSTISGPGFHAMIPFITTFRHVQV------------TLQTDEVK-------------NV 74
LS I + ++HV L+ E + ++
Sbjct: 329 RLSII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 75 PCGTSG---GVMIYFDRIEVVNVL------------SVSSVYDIVKNY--TADYDKALIF 117
P +I D + VVN L S S+ I + + AL
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-- 445
Query: 118 NKVHHEL-------NQFCSIHNLHEVYID--LFDQIDENLKTALQRELNEMAPGL----- 163
H + F S +L Y+D + I +LK E + +
Sbjct: 446 ---HRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 164 FIQA-VRVTKPKIPET----------------IRKN---YELMEAEKTKLLISIQHQKVV 203
F++ +R + I N YE + L I+ +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 204 EKDAE-------TERKRAVIEAEKEAQ 223
K + E + EA K+ Q
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 36.0 bits (82), Expect = 0.014
Identities = 41/299 (13%), Positives = 82/299 (27%), Gaps = 95/299 (31%)
Query: 39 ALLSTISGPG--FHAMIPFITTFRHVQVTLQTDEVKNVPCG----TSGGVMIYFDRIEVV 92
ALL ++ T+ + V L + +E++
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 93 NVLSVSSVYDIVKNYTADYDKA----LIFNKVHHELNQFCSIHN-------LHEVY---- 137
L Y I N+T+ D + L + + EL + L V
Sbjct: 203 QKLL----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 138 IDLFD---QI-----DENLKTAL------QRELNEMAPG--------LFIQAVRVTKPKI 175
+ F+ +I + + L L+ + L ++ + +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 176 P---------------ETIR------KNYELMEAEKTKLLI--SIQHQKVVEKDAETERK 212
P E+IR N++ + +K +I S+ + RK
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-----EPAEYRK 373
Query: 213 R----AVIEAEKEAQI----------AKIQYE-QKVMEQESKQRVAKI---EGKYSLFD 253
+V A I I+ + V+ + K + + E S+
Sbjct: 374 MFDRLSVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.018
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 239 KQRVAKIEGKYSLF--DFSTIRPSL 261
KQ + K++ L+ D S P+L
Sbjct: 19 KQALKKLQASLKLYADD-SA--PAL 40
Score = 31.1 bits (69), Expect = 0.21
Identities = 7/25 (28%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 143 QIDENLKTALQRELNEMAPGLFIQA 167
+ + L+ +L+ ++ AP L I+A
Sbjct: 21 AL-KKLQASLKLYADDSAPALAIKA 44
Score = 29.9 bits (66), Expect = 0.42
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 219 EKEAQIAKIQYEQKVMEQESKQRV---AKIE 246
EK+ + K+Q K+ +S + A +E
Sbjct: 18 EKQ-ALKKLQASLKLYADDSAPALAIKATME 47
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 34.8 bits (79), Expect = 0.026
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 177 ETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQ 236
E + EL+E E + + E ++ E R IE E AK++ + +E
Sbjct: 698 EAEKARKELLELEAMSMAVESTGNAKAEAESRAEAAR--IEGEGSVLQAKLKAQALAIET 755
Query: 237 ESKQRVAKIE 246
E++ K
Sbjct: 756 EAELERVKKV 765
Score = 33.2 bits (75), Expect = 0.077
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 180 RKNYELMEAEKTKLLISIQHQKV-VEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQES 238
R +E E + L ++ Q + +E +AE ER + V E E A+++ E +Q +
Sbjct: 729 RAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLA 788
Query: 239 KQRVAKIEGKYSLFDFSTIR 258
K + TIR
Sbjct: 789 NVEAKKFKEMTEALGPGTIR 808
Score = 30.9 bits (69), Expect = 0.49
Identities = 18/139 (12%), Positives = 39/139 (28%), Gaps = 8/139 (5%)
Query: 108 TADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQA 167
+A + +F E +F Q + + + + +
Sbjct: 595 SARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDAL 654
Query: 168 VRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKI 227
R + I T + E +L E ER++ + ++E E ++
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRL--------EQEARGRLERQKILDQSEAEKARKEL 706
Query: 228 QYEQKVMEQESKQRVAKIE 246
+ + AK E
Sbjct: 707 LELEAMSMAVESTGNAKAE 725
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.3 bits (67), Expect = 0.44
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 14/107 (13%)
Query: 139 DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQ 198
+ + + + +E N A G A + PE+IRK E Q
Sbjct: 62 GASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWRE------------EQ 109
Query: 199 HQKVVEKDAETERKRAVI--EAEKEAQIAKIQYEQKVMEQESKQRVA 243
+++ E DA ++ +A+K+ + + ++V + + R+A
Sbjct: 110 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 156
>1g03_A HTLV-I capsid protein; beta hairpin loop, helix core, viral
protein; NMR {Human t-lymphotropic virus 1} SCOP:
a.73.1.1
Length = 134
Score = 29.1 bits (64), Expect = 0.77
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 151 ALQRELNEMAPG--LFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAE 208
A+++E+++ APG F+Q +R+ + T + +L++ + L+ S+ HQ++ +E
Sbjct: 22 AIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISE 81
Query: 209 TE 210
E
Sbjct: 82 AE 83
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 28.1 bits (62), Expect = 1.7
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 165 IQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQI 224
I A R KP++ + R+ + A K + K K +A +A + +I
Sbjct: 90 IMAKRNQKPEVRKAQREQA--IRAAKEA-----KKAKQASKKTAMAAAKAPTKAAPKQKI 142
Query: 225 AKIQYEQKVMEQESKQRVA 243
K + S RV
Sbjct: 143 VK-------PVKVSAPRVG 154
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A
{Saccharomyces cerevisiae} SCOP: a.252.1.1
Length = 151
Score = 27.8 bits (61), Expect = 2.3
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 16/112 (14%)
Query: 150 TALQRELNEMAPGLFIQAVRV---------TKPKIPETIRKNYELMEAEKTKLLISIQHQ 200
T LQ L++M F + P+ K+ ++ E+ I
Sbjct: 6 TQLQICLDQMT-EQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELST 64
Query: 201 KVVEKDAETER------KRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
++ K + + V E+ +I +Q + +E E + + K E
Sbjct: 65 DIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 116
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 28.3 bits (62), Expect = 2.5
Identities = 7/44 (15%), Positives = 23/44 (52%)
Query: 205 KDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGK 248
K+ + ++ + EA + + A++QY Q+ + ++ + + +
Sbjct: 118 KEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSA 161
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 27.9 bits (63), Expect = 2.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 200 QKVVEKDAETER-KRA-VIEAEKEAQIAKIQYEQKVMEQES 238
QK + + AE ER +RA + AE E Q A+ E + E
Sbjct: 119 QKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISEH 159
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 27.5 bits (61), Expect = 2.8
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIE-AEKEAQIAKIQYEQKVMEQESK 239
+ + EK L + +Q ++ DAE + + + EA++ ++ + E+ +
Sbjct: 41 EKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNA 100
Query: 240 QRVAK 244
+ AK
Sbjct: 101 ELTAK 105
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR
TLA SRT MES; 1.9A {Bacillus firmus}
Length = 358
Score = 27.9 bits (61), Expect = 3.6
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 11/116 (9%)
Query: 143 QIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKV 202
+D N ++ N+M + Q + + L+ E+T L
Sbjct: 140 LLDNNTTQSMGFSWNDMISEMLNQNWHIHNMTNATDASPGWNLLYDERTTNLTL------ 193
Query: 203 VEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYSLFDFSTIR 258
+ + +I A A+IQ + Q + Y F TIR
Sbjct: 194 -----DETERVTLIVTLGHADTARIQAAPGTTAGQGTQYFWLSKDSYDFFPPLTIR 244
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 27.9 bits (61), Expect = 3.9
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 182 NYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQR 241
E +++ L +KV +D ++ I EKEA++ ++Q M+ + + +
Sbjct: 292 QDLHYENFRSERL-KRGGRKVENEDMNKDQ----ILLEKEAELRRMQEMIARMQAQMQMQ 346
Query: 242 VAKIEGK 248
+ +G
Sbjct: 347 MQGGDGD 353
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 27.5 bits (62), Expect = 4.9
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 102 DIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYID 139
+ NY ++D + ++ E+ F ++ L Y+D
Sbjct: 691 STINNY-ENFD----YLNIYQEVQNFINV-ELSNFYLD 722
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 27.1 bits (59), Expect = 5.3
Identities = 6/59 (10%), Positives = 16/59 (27%)
Query: 186 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 244
+ E K L + Q+ + A + + + + + + A
Sbjct: 208 AKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKKVEAPKKVDPKAAKTTPAATKATPAAT 266
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel,
riken structural genomics/proteomics initiative, RSGI;
2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1
d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Length = 582
Score = 27.3 bits (61), Expect = 5.6
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 13/44 (29%)
Query: 105 KNYTADYDKALIFNKVHHELN----QFCSIHNLHEVYIDLFDQI 144
YT + + ++HNL V + ++
Sbjct: 285 SKYTPQE--------LREMPKEERTRLLALHNLW-VIKEEIKRV 319
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 26.3 bits (57), Expect = 7.4
Identities = 8/56 (14%), Positives = 24/56 (42%)
Query: 191 TKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
T+L+ S+ Q +E+ K + +++ + +++E R +++
Sbjct: 6 TQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVK 61
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics,
unknown function, PSI-2, protein structure initiative;
2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Length = 171
Score = 26.5 bits (58), Expect = 7.8
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 207 AETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYSLF 252
A +RK IEA+ I + R ++E + F
Sbjct: 26 ATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATF 71
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.0 bits (60), Expect = 8.2
Identities = 12/77 (15%), Positives = 28/77 (36%)
Query: 174 KIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKV 233
I + +R + +T I A+ E K+ IEA + K+ +
Sbjct: 869 IIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN 928
Query: 234 MEQESKQRVAKIEGKYS 250
+ ++++ + +Y
Sbjct: 929 KIMQLQRKIDEQNKEYK 945
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A
{Saccharomyces cerevisiae} SCOP: a.252.1.1
Length = 132
Score = 25.8 bits (56), Expect = 9.3
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 16/112 (14%)
Query: 150 TALQRELNEMAPGLFIQAVRV---------TKPKIPETIRKNYELMEAEKTKLLISIQHQ 200
T LQ L++M F + P+ K+ ++ E+ I
Sbjct: 6 TQLQICLDQMT-EQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELST 64
Query: 201 KVVEKDAETER------KRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
++ K + + V E+ +I +Q + +E E + + K E
Sbjct: 65 DIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.379
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,920,080
Number of extensions: 236534
Number of successful extensions: 604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 58
Length of query: 263
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 171
Effective length of database: 4,133,061
Effective search space: 706753431
Effective search space used: 706753431
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)