RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8926
         (263 letters)



>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
           {Burkholderia glumae [TaxId: 337]}
          Length = 280

 Score = 31.5 bits (71), Expect = 0.089
 Identities = 13/116 (11%), Positives = 36/116 (31%), Gaps = 9/116 (7%)

Query: 139 DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQ 198
            L  Q+  + +        +      I  ++       +   +  + +  E       +Q
Sbjct: 162 ALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQ 221

Query: 199 HQKVVEKD--AETERKRAVIE------AEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
                 +        +R  I        +++A+IA+++ +Q         R A ++
Sbjct: 222 QDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLR-QQTFTAPGEAIRAASLD 276


>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine
           transglycosylase, N-terminal domain {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 355

 Score = 29.4 bits (65), Expect = 0.48
 Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 16/88 (18%)

Query: 103 IVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPG 162
           +   YT    + +       E  +  ++HNL  V  +   ++ + +K             
Sbjct: 278 VCSKYTPQELREMP----KEERTRLLALHNLW-VIKEEIKRVKQAIKEGELWR------- 325

Query: 163 LFIQAVRVTKPKIPETIR---KNYELME 187
             +     + PK+    +   ++Y  +E
Sbjct: 326 -LVDERARSHPKLYSAYKRLLEHYTFLE 352


>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
           protein 1 (GBP1), C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 300

 Score = 28.9 bits (64), Expect = 0.51
 Identities = 16/128 (12%), Positives = 46/128 (35%), Gaps = 3/128 (2%)

Query: 117 FNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIP 176
              +  +  +        E  +  + +  E++  A+ +    +        V   K +  
Sbjct: 157 LQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESA 216

Query: 177 ETIRKNYELMEAEKTKLLISIQ---HQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKV 233
           +   K    M+ +  +++   +    + + +   + E  R  +  E+E  +A    EQ+ 
Sbjct: 217 QASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQ 276

Query: 234 MEQESKQR 241
           + +E  Q+
Sbjct: 277 LLKEGFQK 284


>d1g03a_ a.73.1.1 (A:) HTLV-I capsid protein {Human T-cell leukemia
           virus type 1 [TaxId: 11908]}
          Length = 134

 Score = 28.1 bits (62), Expect = 0.56
 Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 151 ALQRELNEMAPG--LFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAE 208
           A+++E+++ APG   F+Q +R+   +   T +   +L++   + L+ S+ HQ++    +E
Sbjct: 22  AIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISE 81

Query: 209 TE 210
            E
Sbjct: 82  AE 83


>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
           {Zymomonas mobilis [TaxId: 542]}
          Length = 372

 Score = 28.3 bits (62), Expect = 1.1
 Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 16/52 (30%)

Query: 105 KNYTADYDKALIFNKVHHELN-------QFCSIHNLHEVYIDLFDQIDENLK 149
           + ++  Y        +HH +           + HN+   Y  L  +I +++ 
Sbjct: 314 QKWSRAY--------IHHLIRAGEILGAMLMTEHNIA-FYQQLMQKIRDSIS 356


>d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein
           {Prosthecochloris aestuarii, strain 2k [TaxId: 1102]}
          Length = 359

 Score = 26.5 bits (58), Expect = 3.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 211 RKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYSLFDFS 255
           R    IE+  ++    +  E  +  +   +R+A  EG  S+ DFS
Sbjct: 58  RFTTKIESVVDSVKNTLNVEVDIANETKDRRIAVGEGSLSVGDFS 102


>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4
           [TaxId: 10665]}
          Length = 241

 Score = 25.4 bits (55), Expect = 7.5
 Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 4/30 (13%)

Query: 129 SIHNLHEVYIDLFDQIDENLKTA---LQRE 155
           ++ +LH VY   F  +D   KT    + ++
Sbjct: 211 NVGSLH-VYSRHFYLVDHWWKTGETHISKK 239


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 927,640
Number of extensions: 42482
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 17
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)