Query psy8927
Match_columns 1196
No_of_seqs 229 out of 285
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 23:00:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kbh_B CREB-binding protein, n 18.7 85 0.0029 27.3 3.2 42 859-915 8-49 (59)
2 1zoq_C CREB-binding protein, i 11.2 76 0.0026 26.4 1.0 40 861-915 3-42 (47)
3 1rw2_A ATP-dependent DNA helic 9.2 2.6E+02 0.009 28.3 4.3 62 49-112 34-95 (152)
4 3l9f_A Putative uncharacterize 7.7 50 0.0017 34.7 -1.8 64 565-628 13-77 (204)
5 2of5_A Death domain-containing 7.6 3.7E+02 0.013 25.8 4.4 37 31-76 37-73 (114)
6 1q2z_A ATP-dependent DNA helic 6.6 1.5E+02 0.005 28.8 1.0 57 53-111 7-63 (120)
7 2ao6_B NCOA-2, 14-MER fragment 5.3 2.1E+02 0.0073 20.9 0.9 20 880-907 2-21 (26)
8 1wa5_C Importin alpha RE-expor 4.6 2.1E+03 0.071 26.8 9.9 119 757-898 544-672 (960)
9 4gud_A Imidazole glycerol phos 4.4 2.4E+02 0.0081 28.6 1.0 23 484-506 180-210 (211)
10 2nr1_A NR1 M2, M2; receptor, s 3.8 3.8E+02 0.013 20.2 1.3 14 1160-1176 10-23 (27)
No 1
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=18.65 E-value=85 Score=27.25 Aligned_cols=42 Identities=24% Similarity=0.479 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcCCcccccCCCChhhHHHHHHHHHHHhhhccCCCcchhhHhhhhccc
Q psy8927 859 TKLLHLLEAFASPAFLYTGETNHHLVFFLLEIFNNIIQYQFDGNSNLVYTIIRKRQI 915 (1196)
Q Consensus 859 ~~l~~l~~~~ssp~fllane~Nh~LL~~LLE~fNnIIqyQf~~N~nLVYaIiR~r~~ 915 (1196)
..|-+|+.++.||. +++.+.+.|. |+ ..||.|.-|+||-|..
T Consensus 8 ~aLqqLl~tlksp~---speqqqqvl~--------IL----ksNPqLMAAfIKQR~~ 49 (59)
T 1kbh_B 8 SALQDLLRTLKSPS---SPQQQQQVLN--------IL----KSNPQLMAAFIKQRTA 49 (59)
T ss_dssp THHHHHHHHHHSCT---TTTCSTHHHH--------HH----TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---CHHHHHHHHH--------HH----HhCHHHHHHHHHHHHH
Confidence 35678888999998 8999998883 33 6899999999997753
No 2
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=11.23 E-value=76 Score=26.42 Aligned_cols=40 Identities=25% Similarity=0.494 Sum_probs=32.0
Q ss_pred HHHHHhhhcCCcccccCCCChhhHHHHHHHHHHHhhhccCCCcchhhHhhhhccc
Q psy8927 861 LLHLLEAFASPAFLYTGETNHHLVFFLLEIFNNIIQYQFDGNSNLVYTIIRKRQI 915 (1196)
Q Consensus 861 l~~l~~~~ssp~fllane~Nh~LL~~LLE~fNnIIqyQf~~N~nLVYaIiR~r~~ 915 (1196)
|-+|+..+.||. +.+.+++.|. |+ ..||.|.-|+||-|..
T Consensus 3 LqqLl~tlksp~---sp~qqqqvl~--------IL----ksnPqLMAAfIkQR~~ 42 (47)
T 1zoq_C 3 LQDLLRTLKSPS---SPQQQQQVLN--------IL----KSNPQLMAAFIKQRTA 42 (47)
T ss_dssp HHHHHHTCCSCC---CHHHHHHHHH--------HH----HTCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCC---CHHHHHHHHH--------HH----HcCHHHHHHHHHHHHH
Confidence 568888999998 8888888773 32 5799999999998753
No 3
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=9.17 E-value=2.6e+02 Score=28.28 Aligned_cols=62 Identities=11% Similarity=0.213 Sum_probs=44.2
Q ss_pred cCChHHHHHHHhhCcchHHHHHHHHHHHHHHhhcCcCCCccccchhhhhHHhhhhccccccccc
Q psy8927 49 LIPSAEIRALREEAPSNLATLCYKAVEKLVNAVDSSCRMAHEQQAVLNCTRLLTRLIPYIFEDM 112 (1196)
Q Consensus 49 Lisp~dIR~~Rd~~p~NlaTLi~~~v~rL~~~~~~~~~~~~~~~~~LNCiRlLTRiLP~ifE~~ 112 (1196)
.=|..|-+++-.+..+.+...+..+..++..+..++..... ..|+-|++.+-.=.-...|..
T Consensus 34 ~nPv~DFk~lL~~~~~~~~~A~~qM~~vI~~Ll~~s~~~~y--~KA~ecL~~lR~~~i~~~ep~ 95 (152)
T 1rw2_A 34 VNPAENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYF--MKSIDCIRAFREEAIKFSEEQ 95 (152)
T ss_dssp SCTTHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHSSCSHHH--HHHHHHHHHHHHHHHHHTCSH
T ss_pred CCcHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhccccchH--HHHHHHHHHHHHHHHhccChH
Confidence 33556777777776677999999999999999886522223 359999999987665444433
No 4
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=7.71 E-value=50 Score=34.74 Aligned_cols=64 Identities=22% Similarity=0.174 Sum_probs=31.6
Q ss_pred hhhhhhhcccccc-ccccccccchhhhhHhhhhccccccccccCCCCCcccCCcccccccccccc
Q psy8927 565 ILVPILYHLNDSR-ADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYSAAVPMDIPVFTGLVLRA 628 (1196)
Q Consensus 565 ~~~~~~~~~~~~~-~~~~~~g~~~~~~f~~~~~s~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~ 628 (1196)
=||||.+|..-.. ..|-+.|.|-+-..||-+|+.++..|-.|-|-+.....--.++-.|+|-++
T Consensus 13 ~~~~~~~~~~~~~~~~~l~kG~ms~r~~IL~lL~~~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~ 77 (204)
T 3l9f_A 13 GLVPRGSHMASMTGGQQMGRGSMQGKDIILGILSKKERSGYEINDILQNQLSYFYDGTYGMIYPT 77 (204)
T ss_dssp ----------------------CCHHHHHHHHTSSCCEEHHHHHHHHHHTSTTTEECCTTCHHHH
T ss_pred CccchHHHHHHHhhHHHHhhchhHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCccCCCcchHHHH
Confidence 3799999976555 577889999998889999998899999998887665433344555665543
No 5
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=7.59 E-value=3.7e+02 Score=25.78 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=28.1
Q ss_pred hHHhhccCCCCChhhhcccCChHHHHHHHhhCcchHHHHHHHHHHH
Q psy8927 31 FWNQFWSENVTNAQDIFTLIPSAEIRALREEAPSNLATLCYKAVEK 76 (1196)
Q Consensus 31 fW~~fW~~~p~sa~DVF~Lisp~dIR~~Rd~~p~NlaTLi~~~v~r 76 (1196)
.|.+|=..+ =++..||.+++.++|.|+..=++.+-.+
T Consensus 37 ~Wk~LAR~L---------Glse~dId~I~~~~p~~l~eq~~qmL~~ 73 (114)
T 2of5_A 37 EWEPMVLSL---------GLSQTDIYRCKANHPHNVQSQVVEAFIR 73 (114)
T ss_dssp THHHHHHTT---------TCCHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hHHHHHHHc---------CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 677776533 2889999999999999998766665433
No 6
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=6.61 E-value=1.5e+02 Score=28.77 Aligned_cols=57 Identities=11% Similarity=0.192 Sum_probs=37.4
Q ss_pred HHHHHHHhhCcchHHHHHHHHHHHHHHhhcCcCCCccccchhhhhHHhhhhcccccccc
Q psy8927 53 AEIRALREEAPSNLATLCYKAVEKLVNAVDSSCRMAHEQQAVLNCTRLLTRLIPYIFED 111 (1196)
Q Consensus 53 ~dIR~~Rd~~p~NlaTLi~~~v~rL~~~~~~~~~~~~~~~~~LNCiRlLTRiLP~ifE~ 111 (1196)
.|-+++-.+..+++...+..+..++..+..++..... ..|+-|++.+-.=.-...|.
T Consensus 7 ~DFk~ll~~~~~~~~~A~~qm~~vI~~Ll~~s~~~~y--~ka~ecl~~~R~~~i~~~ep 63 (120)
T 1q2z_A 7 ENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYF--MKSIDCIRAFREEAIKFSEE 63 (120)
T ss_dssp HHHHHHTSSSCCTTTHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHHHHHHHHhccCh
Confidence 3445554445567888888888888888775522223 35999999998765444333
No 7
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=5.27 E-value=2.1e+02 Score=20.93 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=14.1
Q ss_pred ChhhHHHHHHHHHHHhhhccCCCcchhh
Q psy8927 880 NHHLVFFLLEIFNNIIQYQFDGNSNLVY 907 (1196)
Q Consensus 880 Nh~LL~~LLE~fNnIIqyQf~~N~nLVY 907 (1196)
||.|+.|||+-= +||..|-|
T Consensus 2 ~~~LLRyLLDkD--------dgnaalry 21 (26)
T 2ao6_B 2 ENALLRYLLDKD--------DGNAALRY 21 (26)
T ss_pred ccHHHHHHHccc--------cchHHHHH
Confidence 789999998742 56655554
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=4.64 E-value=2.1e+03 Score=26.78 Aligned_cols=119 Identities=11% Similarity=0.277 Sum_probs=72.8
Q ss_pred cccchhhhhhhhhhccC------cCCccccchhhhHhhhc----chHhhhhccHHHHHHHHHHHHhhcCccccccCCCCc
Q psy8927 757 THADLLMIVFHKVITSG------HNRLQPLFDCLFTILVN----VSPYLKTLSMVASTKLLHLLEAFASPAFLYTGETNH 826 (1196)
Q Consensus 757 TyADfLIisi~~LItt~------~~rL~~ly~~LLtIL~N----iSPY~k~LS~~assKLl~Lf~sfSsP~FL~~~~~n~ 826 (1196)
.|.+-++..+..++... ......++.|+-.++.+ +.||+..+- .+|++.+.... .++.|.
T Consensus 544 p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~----~~L~~~l~~~~------~~~~~~ 613 (960)
T 1wa5_C 544 NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLL----AQFIEIVTIMA------KNPSNP 613 (960)
T ss_dssp TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHH----HHHHHHHHHHT------TSCCCH
T ss_pred hhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHH------hCCCCc
Confidence 36666777777777764 12456777887777764 567766543 56666666431 245667
Q ss_pred hhHHHHHHHhhhhhcccccCchhhhhhhhHHHHHHHHHHhhhcCCcccccCCCChhhHHHHHHHHHHHhhhc
Q psy8927 827 HLVFFLLEIFNNIIQYQFDVSPYLKTLSMVASTKLLHLLEAFASPAFLYTGETNHHLVFFLLEIFNNIIQYQ 898 (1196)
Q Consensus 827 ~ll~~ll~~~~~ii~~~~~~~p~~~~ls~~~~~~l~~l~~~~ssp~fllane~Nh~LL~~LLE~fNnIIqyQ 898 (1196)
.+..+++|++..|+.. .+|- .-..-+..++.++..+. .+. ...+.-+.++++..++++.
T Consensus 614 ~~~~~~~e~l~~l~~~---~~~~---~~~~~~~~~~p~~~~iL------~~~-~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 614 RFTHYTFESIGAILNY---TQRQ---NLPLLVDSMMPTFLTVF------SED-IQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHHHT---SCGG---GHHHHHHHHHHHHHHHH------HTT-CTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc---CCcc---hHHHHHHHHHHHHHHHH------Hhh-hHhhHHHHHHHHHHHHHhc
Confidence 7778899999999887 2221 11223445555554432 222 2356777888888888765
No 9
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=4.39 E-value=2.4e+02 Score=28.59 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=12.0
Q ss_pred cccchhhH--------HHHHHHHhhccchhh
Q psy8927 484 KKIEFHQE--------LLVLFWKMCDYNKKF 506 (1196)
Q Consensus 484 Kki~~hqE--------lLvLfWk~~d~n~~f 506 (1196)
--++||+| +|-=|.++|-.|..|
T Consensus 180 ~GvQFHPE~s~~~G~~ll~nFl~~~ge~~~~ 210 (211)
T 4gud_A 180 YGVQFHPERSSKAGARLIQNFLELRGENLYF 210 (211)
T ss_dssp EEESSCGGGSHHHHHHHHHHHHHC-------
T ss_pred EEEEccCEecCccHHHHHHHHHHHhcccccc
Confidence 36899999 555577888777665
No 10
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=3.77 E-value=3.8e+02 Score=20.22 Aligned_cols=14 Identities=36% Similarity=1.111 Sum_probs=10.0
Q ss_pred chhhHHHHHhHHhhhhc
Q psy8927 1160 GTTTWFRTYMWGVIYLR 1176 (1196)
Q Consensus 1160 ~t~~Wf~SllWG~Ifl~ 1176 (1196)
.+..||. ||+++=+
T Consensus 10 ~aa~wF~---WGvllns 23 (27)
T 2nr1_A 10 SSAMWFS---WGVLLNS 23 (27)
T ss_dssp HHHHHHH---HHHHHHH
T ss_pred hhhHHHh---hHhheec
Confidence 4677875 9998754
Done!