Query psy8927
Match_columns 1196
No_of_seqs 229 out of 285
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 23:01:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8927.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8927hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rw2a_ a.118.19.1 (A:) C-term 10.4 1E+02 0.0075 28.8 4.3 59 45-105 30-88 (152)
2 d1lnsa1 a.40.2.1 (A:1-145) X-P 7.7 63 0.0046 30.4 1.4 59 725-784 78-138 (145)
3 d1th8a_ d.122.1.3 (A:) Anti-si 3.5 2.2E+02 0.016 25.0 2.2 19 886-904 43-61 (139)
4 d1h3oa_ a.22.1.3 (A:) TAF(II)- 2.6 2E+02 0.014 22.5 0.6 29 1111-1139 7-36 (50)
5 d1xl3c1 a.243.1.1 (C:2-92) Tye 2.6 1.7E+02 0.013 25.4 0.2 22 478-499 33-54 (91)
6 d2vglb_ a.118.1.10 (B:) Adapti 2.5 1.1E+03 0.083 24.5 7.3 121 781-912 120-259 (579)
7 d2odfa1 c.56.5.9 (A:6-257) Hyp 2.5 2.2E+02 0.016 28.0 1.0 26 588-614 174-199 (252)
8 d1hlva2 a.4.1.7 (A:67-131) DNA 2.4 3.2E+02 0.023 21.6 1.8 15 1084-1098 48-62 (65)
9 d1tx3a1 c.52.1.19 (A:2-258) Re 2.4 80 0.0058 31.2 -2.5 25 738-770 99-125 (257)
10 d1v2aa1 a.45.1.1 (A:84-208) Cl 2.3 4.6E+02 0.034 21.9 2.9 42 757-799 68-112 (125)
No 1
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.45 E-value=1e+02 Score=28.84 Aligned_cols=59 Identities=10% Similarity=0.224 Sum_probs=43.4
Q ss_pred hhcccCChHHHHHHHhhCcchHHHHHHHHHHHHHHhhcCcCCCccccchhhhhHHhhhhcc
Q psy8927 45 DIFTLIPSAEIRALREEAPSNLATLCYKAVEKLVNAVDSSCRMAHEQQAVLNCTRLLTRLI 105 (1196)
Q Consensus 45 DVF~Lisp~dIR~~Rd~~p~NlaTLi~~~v~rL~~~~~~~~~~~~~~~~~LNCiRlLTRiL 105 (1196)
.|=+.=|..|-+.+-.+.-.++...+..+-.++.+++++......+ .|+-|++.+-.-.
T Consensus 30 ~Ig~~nPv~DF~~ll~~~d~~~~~a~~qm~~vI~~lv~s~~~~~y~--Ka~ecL~~lRe~c 88 (152)
T d1rw2a_ 30 SVGSVNPAENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYFM--KSIDCIRAFREEA 88 (152)
T ss_dssp SSSSSCTTHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHSSCSHHHH--HHHHHHHHHHHHH
T ss_pred eeCCCCcHHHHHHHHHccchhHHHHHHHHHHHHHHHHhccccccHH--HHHHHHHHHHHHH
Confidence 3444456667777777777789999999999999999754333334 4999999997765
No 2
>d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=7.67 E-value=63 Score=30.36 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=44.6
Q ss_pred HHHhhccccccccccCcCccCCCCcccCCc--cccccchhhhhhhhhhccCcCCccccchhh
Q psy8927 725 ILLLLSGERNFGVRLNKPYSAAVPMDIPVF--TGTHADLLMIVFHKVITSGHNRLQPLFDCL 784 (1196)
Q Consensus 725 ILq~LS~ErnFGv~LNKpf~~~~pi~ip~f--~GTyADfLIisi~~LItt~~~rL~~ly~~L 784 (1196)
-||+|-=+.++--.+++|+..-..+.+|.. ..|.+| ||-++|.|+.|-...-+.+.|.|
T Consensus 78 ALQLLgF~~~~DF~~~dp~~~m~k~~lP~~~~~~~~~~-li~a~Y~LLnTRtKnG~tliD~L 138 (145)
T d1lnsa1 78 ALQLLDFVPNFDFEIGKAFEYAKNSNLPQIEAEMTTEN-IISAFYYLLCTRRKTGMILVEHW 138 (145)
T ss_dssp HHHHTTCCBTTTBCTTCHHHHHHHTTCCCCCSCCCHHH-HHHHHHHHHHSBCTTSSBHHHHH
T ss_pred HHHHcCCccccccccccHHHHHHHcCCCeecCccCHHH-HHHHHHHHHhccccccccHHHHH
Confidence 689999999999999999975444445532 456778 88899999998766656666654
No 3
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.49 E-value=2.2e+02 Score=25.02 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhccCCCcc
Q psy8927 886 FLLEIFNNIIQYQFDGNSN 904 (1196)
Q Consensus 886 ~LLE~fNnIIqyQf~~N~n 904 (1196)
-+-|+++|+|+|.|.+.++
T Consensus 43 av~E~v~Nai~ha~~~~~~ 61 (139)
T d1th8a_ 43 VVSEAVTNAIIHGYNNDPN 61 (139)
T ss_dssp HHHHHHHHHHHTTSTTCTT
T ss_pred HHHHhhhhhhheecCCCCC
Confidence 4669999999999987653
No 4
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.59 E-value=2e+02 Score=22.55 Aligned_cols=29 Identities=21% Similarity=0.459 Sum_probs=22.8
Q ss_pred HhhhhhHHHhhhcCCCCH-HHHHHHhhccc
Q psy8927 1111 VLVPQVEKICIDKGLTDE-SEILKFLQHGT 1139 (1196)
Q Consensus 1111 ~L~PqVe~~c~~kg~tde-~eil~fL~~~t 1139 (1196)
.|..+|.+|+.+-|+++. +++..++.|.+
T Consensus 7 ~Lq~ri~~I~~k~Gl~e~~~dV~~lISHA~ 36 (50)
T d1h3oa_ 7 PLQRRILEIGKKHGITELHPDVVSYVSHAT 36 (50)
T ss_dssp HHHHHHHHHHHTTTCCEECTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 455788899999999864 48888888875
No 5
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=2.59 E-value=1.7e+02 Score=25.41 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=18.9
Q ss_pred ccCCCccccchhhHHHHHHHHh
Q psy8927 478 YLPNSTKKIEFHQELLVLFWKM 499 (1196)
Q Consensus 478 YLP~S~Kki~~hqElLvLfWk~ 499 (1196)
=||....+|.|.||+.-++|.+
T Consensus 33 ~l~~~e~~I~F~~El~~l~R~i 54 (91)
T d1xl3c1 33 SLPTPEIKVRFYQDLKRMFRLF 54 (91)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHHHHHHC
Confidence 3677789999999999999874
No 6
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.51 E-value=1.1e+03 Score=24.51 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=55.8
Q ss_pred chhhhHhhhcchHhhhhccHHHHHHHHHHHHhh-cCcccc-----ccCCCCchhHHHHHHHhhhhhcccccC-----ch-
Q psy8927 781 FDCLFTILVNVSPYLKTLSMVASTKLLHLLEAF-ASPAFL-----YTGETNHHLVFFLLEIFNNIIQYQFDV-----SP- 848 (1196)
Q Consensus 781 y~~LLtIL~NiSPY~k~LS~~assKLl~Lf~sf-SsP~FL-----~~~~~n~~ll~~ll~~~~~ii~~~~~~-----~p- 848 (1196)
.+.+...+..-+||++.-...+..|+.++.... -...|+ +=+|.|+.....-+.++..|.....+. ++
T Consensus 120 ~~~l~~~L~D~~p~VRk~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~n~~V~~~Al~~L~~I~~~~~~~~~~~l~~~ 199 (579)
T d2vglb_ 120 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQ 199 (579)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhccChhhhhhhhHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCccchhHHhhHH
Confidence 334444445556787775555555543211000 000010 124667777776777777776544321 11
Q ss_pred -------hhhhhhhHHHHHHHHHHhhhcCCcccccCCCChhhHHHHHHHHHHHhhhccCCCcchhhHhhhh
Q psy8927 849 -------YLKTLSMVASTKLLHLLEAFASPAFLYTGETNHHLVFFLLEIFNNIIQYQFDGNSNLVYTIIRK 912 (1196)
Q Consensus 849 -------~~~~ls~~~~~~l~~l~~~~ssp~fllane~Nh~LL~~LLE~fNnIIqyQf~~N~nLVYaIiR~ 912 (1196)
++...+.-....+++++..+ .+.+......++|.+-..++ +.|+..+++.++.
T Consensus 200 ~i~~Ll~~l~~~~~~~q~~il~~L~~~--------~~~~~~~~~~li~~l~~~L~---~~n~~V~~~a~~~ 259 (579)
T d2vglb_ 200 NINKLLTALNECTEWGQIFILDCLSNY--------NPKDDREAQSICERVTPRLS---HANSAVVLSAVKV 259 (579)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHTS--------CCCSHHHHHHHHHHHTTCSC---SSTTHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHc---CchHHHHHHHHHH
Confidence 01111111223333433322 34555555555555444443 4688777766653
No 7
>d2odfa1 c.56.5.9 (A:6-257) Hypothetical protein Atu2144 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.49 E-value=2.2e+02 Score=28.00 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=19.3
Q ss_pred hhhhHhhhhccccccccccCCCCCccc
Q psy8927 588 IGVFILLLLSGERNFGVRLNKPYSAAV 614 (1196)
Q Consensus 588 ~~~f~~~~~s~~~~f~~~l~~~~~~~~ 614 (1196)
++-.++..|. +..|-|..|+||++..
T Consensus 174 ~~~~~~~~l~-~~g~~V~~N~PYsG~~ 199 (252)
T d2odfa1 174 LADAMLAGAE-GASLTVRRNDPYGPED 199 (252)
T ss_dssp HHHHHHHHTT-TCSSCEEETCSCCGGG
T ss_pred hhHHHHHHHh-ccCceeeecceecCCc
Confidence 4445556665 5689999999999974
No 8
>d1hlva2 a.4.1.7 (A:67-131) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.43 E-value=3.2e+02 Score=21.58 Aligned_cols=15 Identities=13% Similarity=0.563 Sum_probs=13.4
Q ss_pred CccccChhHHHhhhc
Q psy8927 1084 RVWTPTPEWVKSWKD 1098 (1196)
Q Consensus 1084 ~~F~PT~eWv~SW~~ 1098 (1196)
..|+++..|++.||.
T Consensus 48 ~~F~aS~GWL~rFK~ 62 (65)
T d1hlva2 48 DDFTASNGWLDRFRR 62 (65)
T ss_dssp TTCCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 579999999999985
No 9
>d1tx3a1 c.52.1.19 (A:2-258) Restriction endonuclease HincII {Haemophilus influenzae [TaxId: 727]}
Probab=2.35 E-value=80 Score=31.22 Aligned_cols=25 Identities=16% Similarity=0.480 Sum_probs=18.1
Q ss_pred ccCcCccCCCCcccCCccccccchhhh--hhhhhh
Q psy8927 738 RLNKPYSAAVPMDIPVFTGTHADLLMI--VFHKVI 770 (1196)
Q Consensus 738 ~LNKpf~~~~pi~ip~f~GTyADfLIi--si~~LI 770 (1196)
++|.+|+-. +|..||.||+ .+|.||
T Consensus 99 S~~n~FeeK--------QnDtADiLvv~d~f~eii 125 (257)
T d1tx3a1 99 SIENLFEEK--------QNDTADILLVKDQFYELL 125 (257)
T ss_dssp BTTBCCCCC--------TTCSCSEEEEETTEEEEE
T ss_pred ccccchhhh--------cCCccceEEehhhhhhHh
Confidence 456666644 5889999998 577766
No 10
>d1v2aa1 a.45.1.1 (A:84-208) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}
Probab=2.33 E-value=4.6e+02 Score=21.93 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=23.3
Q ss_pred cccchhhhhhhhhhccCcCCccccchhhhHhhhcc-h--Hhhhhcc
Q psy8927 757 THADLLMIVFHKVITSGHNRLQPLFDCLFTILVNV-S--PYLKTLS 799 (1196)
Q Consensus 757 TyADfLIisi~~LItt~~~rL~~ly~~LLtIL~Ni-S--PY~k~LS 799 (1196)
|.||+.+.+....+....-.+.. ||.+-.-+..+ + |+.+...
T Consensus 68 T~ADi~l~~~~~~~~~~~~~~~~-~P~l~~w~~r~~~~~P~~~e~~ 112 (125)
T d1v2aa1 68 TVADICLLGTVTALNWLKHDLEP-FPHIRAWLERVRAEMPDYEEFS 112 (125)
T ss_dssp CHHHHHHHHHHHGGGTTTCCCTT-CHHHHHHHHHHHTTSTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCccc-CHHHHHHHHHHHHhCchHHHHH
Confidence 68999887554444333333443 66666555555 2 5555443
Done!