RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8927
(1196 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 3e-11
Identities = 85/589 (14%), Positives = 161/589 (27%), Gaps = 216/589 (36%)
Query: 72 KAVEKLVNAVDSSCRMAH--EQQAVLNCTRLL--------TRLIPYIFEDMDWR--GFFW 119
K V+ + ++ S + H + ++ T L ++ E++ F
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 120 SSLPSKSTSDENEGEGPDKAEDLQSIDSCEYIWERGVGFATSPA-------RCPAHESAR 172
S + + E P S+ + YI +R + + R + R
Sbjct: 96 SPI-------KTEQRQP-------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 173 TELLKL--------------------LLTCFSETIYQPPQDASDNTFWNQFWSENVTNAQ 212
LL+L L C S + Q D FW N+ N
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV----QCKMDF---KIFWL-NLKNCN 193
Query: 213 DIFTLIPAAEIRALREEAPSNLATLCYKAVEKLVNAVDSSCRMAHEQQAVLNCTRLLTRL 272
T++ L L Y+ + D S + ++ R L +
Sbjct: 194 SPETVL-------------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 273 IPY-----IFEDMDWRGFFWSSLPSKSTSDDNEGEGSTPAEDVESVPLAQSLLNAICDLL 327
PY + ++ ++ NA
Sbjct: 241 KPYENCLLVLLNV------QNA----------------------------KAWNA----- 261
Query: 328 FCPDFTVASNKCTCQVFLMLGTQDNLFINYLSRIHRDEDFQFVLAGFSRLYQDGNRTRGL 387
F + +C++ L+ T+ ++LS + + D + + L
Sbjct: 262 F--NL-------SCKI-LLT-TRFKQVTDFLSAATT-----------THISLD-HHSMTL 298
Query: 388 ALTRHLGTQDNLFINYLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLPNSTKKIEFHQELL 447
L + YL +D + VL NP + + S + +
Sbjct: 299 TPDEVKS----LLLKYLDCRPQDLPRE-VLTT------NPRRLSIIAESIRDGLATWD-- 345
Query: 448 VLFWKMCDYNKTLTQLAGFSRLLNNPLLQTY------LPNSTKKIEFHQELLVLFW---- 497
WK + +K T + +L + P S I LL L W
Sbjct: 346 --NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIP--TILLSLIWFDVI 400
Query: 498 ---------KMCDY------NKKFLYYVLKSSDVLDILVPILYHLNDSRADQSRVGLMHI 542
K+ Y K+ + I + + L + A +H
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTIS------IPSIYLELKVKLENEYA-------LH- 446
Query: 543 GVFILLLKKFL--YYVLKSSDVLDILVP---------ILYHLNDSRADQ 580
+ + Y + K+ D D++ P I +HL + +
Sbjct: 447 -------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Score = 63.7 bits (154), Expect = 3e-10
Identities = 65/491 (13%), Positives = 141/491 (28%), Gaps = 141/491 (28%)
Query: 408 HRDEDFQFVLAGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCDYNKTLTQLAGFS 467
H DF+ G + +L + + +++ D K++
Sbjct: 4 HHHMDFE---TGEHQYQYKDILSVFEDAFVDNFDC-KDVQ-------DMPKSILSKEEID 52
Query: 468 RLLN--NPLLQTYLPNSTKKIEFHQELLVLFWKMCDYNKKFLYYVLKSSDVLD---ILVP 522
++ + + T LFW + ++ + ++ ++ ++ P
Sbjct: 53 HIIMSKDAVSGTLR---------------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 523 ILYHLNDSRADQSRVGLMHIGVFILLLKKFLYYVLKSSDVLDILVPILYHLNDSRAD--- 579
I + ++ + + + Y++ SR
Sbjct: 98 IKTEQRQPSMMT---------------RMYIEQRDRLYNDNQVFAK--YNV--SRLQPYL 138
Query: 580 QSRVGLMHIGVFILLLLSGERNFGVRLNKPYSAAVPMDIPVFTGLVLRADQSRVGLMHIG 639
+ R L+ + +L+ G G K + V M
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSG----K--T--------WVALDVCL-SYKVQCKMDFK 183
Query: 640 VFIL---------LLLSGERNFGVRLNKPYSAAVPMDIPVFTGNSINILMEDLKFLYYVL 690
+F L +L + +++ +++ D I+ + +L+ L L
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRRL---L 238
Query: 691 KSSDVLDILVPILYHLNDSRADQSRVGLMHIGVF-----ILLLLSGERNFGV--RLNKPY 743
KS + L+ +L ++ +++ F ILL R V L+
Sbjct: 239 KSKPYENCLL-VLLNVQNAK---------AWNAFNLSCKILLT---TRFKQVTDFLSAAT 285
Query: 744 SAAVPMDIPVFTGTHADLLMIVFHKVITSGHNRLQPLFDCLFTILVNVSPYLKTLSMVA- 802
+ + +D T T ++ + K + L P +P LS++A
Sbjct: 286 TTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDL-PREVL------TTNPRR--LSIIAE 335
Query: 803 ----------------STKLLHLLEAFASPAFLYTGETNHHLVFFLLEIFNNIIQYQFDV 846
KL ++E +S L E F L +F
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIE--SSLNVLEPAEYRKM--FDRLSVFPP------SA 385
Query: 847 S-PYLKTLSMV 856
P LS++
Sbjct: 386 HIPT-ILLSLI 395
Score = 61.8 bits (149), Expect = 1e-09
Identities = 107/707 (15%), Positives = 204/707 (28%), Gaps = 196/707 (27%)
Query: 258 EQQAVLNCTRLLTRLIPYIFEDMDWRGFFWSSLPSKSTSDDNEGEGSTPAEDVESVPLAQ 317
E Q +L+ ++ D K D + S E+++ + +++
Sbjct: 13 EHQ--YQYKDILSVFEDAFVDNFD----------CKDVQDMPKSILSK--EEIDHIIMSK 58
Query: 318 SLLNAICDLLFCPDFTVASNKCTCQVFLMLGTQDNLFINY---LSRIH-RDEDFQFVLAG 373
++ LF ++ + Q F+ ++ L INY +S I +
Sbjct: 59 DAVSGT-LRLF--WTLLSKQEEMVQKFV----EEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 374 F----SRLYQDG------NRTRG---LALTRHLGTQDNLFINYLSRIHRDEDFQFV--LA 418
+ RLY D N +R L L + L L R + +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL---LEL---------RPAKNVLIDGVL 159
Query: 419 GF--SRL----LNNPLLQTYLPNSTKKIEFHQELLVLFW----KMCDYNKTLTQLAGFSR 468
G + + + +Q + KI FW L L
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDF---KI---------FWLNLKNCNSPETVLEMLQKLLY 207
Query: 469 LLNNPLLQTYLPNSTKKIEFH--QELLVLFWKMCDYNKKFLYYVLKSSDVLDILVPILYH 526
++ +S K+ H Q L K Y L VL +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--------VLL-------N 252
Query: 527 LNDSRADQSRVGLMHIGVF-----ILLLKKFLYYVLKSSDVLDILVPILY-HLNDSRADQ 580
+ +++ F ILL +F V D L H+ D
Sbjct: 253 VQNAK---------AWNAFNLSCKILLTTRF-------KQVTDFLSAATTTHI---SLDH 293
Query: 581 SRVGLMH---IGVFILLLLSGERNFGVRLNK-PYSAAV--PMDIPVFTGLVLRADQSR-- 632
+ L + + L R P P + + +R +
Sbjct: 294 HSMTLTPDEVKSLLLKYL-------DCRPQDLPREVLTTNPRRLSII-AESIRDGLATWD 345
Query: 633 ----VGLMH----IGVFILLLLSGERNFGVRLNKPYSAAVPMDIPVFTGNSINILMEDLK 684
V I + +L E K + + VF S +I L
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAE------YRKMF-----DRLSVFP-PSAHIPTILLS 393
Query: 685 FLYYVLKSSDVLDILVPIL-YHLNDSRADQSRVGLMHIGVFILLLLSGERNFGVRLNKPY 743
+++ + SDV+ ++ + Y L + + +S + + I + + + L E + Y
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 744 SAAVPMDIPVFTGTHAD---LLMIVFHKVITSGHNRLQPLFDCLFTILVNVSPYLKTLSM 800
+ D + D I H + H LF +F ++ +L+
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVF---LDFR-FLE---- 504
Query: 801 VASTKLLHLLEAFASPAFLYTGETNHHLVFFLLEIFNNIIQYQFDVSPYLKTLSMVASTK 860
K+ H A+ + + T L F+ I +N +Y+ V+ L
Sbjct: 505 ---QKIRHDSTAWNASGSIL--NTLQQLKFYKPYICDNDPKYERLVNAILD--------- 550
Query: 861 LLHLLEAFASPAFLYTGETNHHLVFFLLEIFNNIIQYQFDGNSNLVY 907
FL E N + + ++++ ++
Sbjct: 551 ------------FLPKIEEN-----LICSKYTDLLRIALMAEDEAIF 580
Score = 61.0 bits (147), Expect = 2e-09
Identities = 77/498 (15%), Positives = 132/498 (26%), Gaps = 166/498 (33%)
Query: 35 FWSENVTNAQDIFTLIPSAEIRALREEAPSNLATLCYKAVEKLVNAVDSSCRMAHEQQAV 94
FW N+ N T++ L L Y+ + D S + ++
Sbjct: 185 FWL-NLKNCNSPETVL-------------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 95 LNCTRLLTRLIPY-----IFEDM----DWRGF-----------------FWSSLPSK--S 126
R L + PY + ++ W F F S+ + S
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 127 TSDENEGEGPDKAEDLQSIDSCEYIWERGVGFATSPARCPAHESARTELLK---LLLTCF 183
+ PD+ + L C + R E+L L+
Sbjct: 291 LDHHSMTLTPDEVKSL---------------LLKY-LDCRPQDLPR-EVLTTNPRRLSII 333
Query: 184 SETIYQPPQDASDNTFWNQFWSENVTNAQDIF--TLIPAAEIRAL-------REEAPSNL 234
+E+I DN W + +T + L P AE R + A
Sbjct: 334 AESIRDGL-ATWDN--WKHVNCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPT 389
Query: 235 ATLC-------YKAVEKLVNAVDSSCRMAHEQQAVLNCTRLLTRLIPYIFEDMDWRGFFW 287
L V +VN + + +Q + IP I+ ++
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTIS------IPSIYLEL------- 435
Query: 288 SSLPSKSTSDDNEGEGSTPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKCTCQVFLML 347
+NE L +S+++ K L+
Sbjct: 436 ------KVKLENEYA------------LHRSIVDH-----------YNIPKTFDSDDLIP 466
Query: 348 GTQDNLFINY----LSRIHRDEDFQFVLAGFSRLYQDGN------RTRGLALTRHLGTQD 397
D F ++ L I E F ++ D R A +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTL----FRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 398 NL--FINYLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCD 455
L Y I ++ + RL+N + +LP +E L+ K D
Sbjct: 523 TLQQLKFYKPYICDNDPK------YERLVNA--ILDFLPK-------IEENLICS-KYTD 566
Query: 456 YNKTLTQLAGFSRLLNNP 473
L ++A L
Sbjct: 567 ----LLRIA-----LMAE 575
Score = 34.4 bits (78), Expect = 0.29
Identities = 83/579 (14%), Positives = 167/579 (28%), Gaps = 158/579 (27%)
Query: 668 IPVFTGNSINILMEDLKFLYYVLKSSDVLDILVPILY-----HLNDSRADQSRVGLMHIG 722
+ VF +++ DV D+ IL H+ S+ S +
Sbjct: 22 LSVFEDA----FVDNFDC-------KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL--- 67
Query: 723 VFILLLLSGERN----FGVRLNKPYS------AAVPMDIPVFTGTHADLLMIVFH--KVI 770
F LL E L Y + T + + +++ +V
Sbjct: 68 -FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 771 TSGH-NRLQPLFDCLFTILVNVSP--YL---------KTLSMVASTKLLH-LLEAFASPA 817
+ +RLQP + L L+ + P + KT + L + +
Sbjct: 127 AKYNVSRLQP-YLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKI 184
Query: 818 F-LYTGETNHHLVFFLLEIFNNIIQYQFDVSPYLKTLSMVASTKL-LHLLEAFASPAFLY 875
F L N +LE+ ++ YQ D + ++ KL +H ++A
Sbjct: 185 FWLNLKNCNSPET--VLEMLQKLL-YQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 876 TGETNHHLVFFLLEIFN-NIIQYQFDGNSNLVYTIIRKRQIFYALSNLPSDSASIHRALS 934
N LV LL + N F+ + ++ T + + LS
Sbjct: 241 KPYENCLLV--LLNVQNAKAWNA-FNLSCKILLT---------------TRFKQVTDFLS 282
Query: 935 VSGGRKRSS-PLPPLLTSAPSSPSAGVEPSSPSMEGSKPALPAE-----PGTLN---ATL 985
+ S LT P ++ LP E P L+ ++
Sbjct: 283 AATTTHISLDHHSMTLT-----PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 986 ADTPGPDKAEDLQSIDSCEYIWERGVGFATSPARCPAHESARTELLKLLLTCFSETIYQP 1045
D G ++ + ++ T +++ L Y+
Sbjct: 338 RD--GLATWDNWKHVNC----------------------DKLTTIIESSLNVLEPAEYR- 372
Query: 1046 PQGIEKMTEKESAHPGGENENVVAKPSSISSPIQHSHPRVWTPTPEWVKSWKDKLPLQTI 1105
KM ++ S P + ++ P+ + S +W + +
Sbjct: 373 -----KMFDRLSVFP--PSAHI---PTILLS-------LIWFDVIK-----------SDV 404
Query: 1106 MRLLQVLVPQVEKICIDKGLTDESEILKFLQHGTLVGLLPVP-----HPILIRKYQA--- 1157
M ++ L + ++K E + L + + H ++ Y
Sbjct: 405 MVVVNKLH---KYSLVEK---QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 1158 ---NSGTTTWFRTYM-WGVIY-LRNVDPPIWYDTDVKLF 1191
+ + Y + + L+N++ P +F
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 9e-10
Identities = 73/483 (15%), Positives = 146/483 (30%), Gaps = 165/483 (34%)
Query: 115 RGFFWSSLPSKSTSDENEGEGPDKAEDLQSIDSCEYIWERGVGFATSPARCPAHESARTE 174
+ F LP + + E AE + + +G+ +S P+ +
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAE----------LVGKFLGYVSSLVE-PSKVGQFDQ 82
Query: 175 LLKLLLTCFSETIYQPPQDASD-NTFWNQFWSENVTNAQDIFTLIPA---AEI---RALR 227
+L L LT F + +D + + EN T LI A I R
Sbjct: 83 VLNLCLTEFENCYLE----GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 228 EEAPSNL--------ATLC----------------------YKA-VEKLVNAVDSSCRMA 256
+++ S L A L Y V L+ S+ ++
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF--SAETLS 196
Query: 257 HEQQAVLNCTRLLTRLIPYIFEDMDWRGFFWSSLPSKSTSDDNEGEGSTPAED------V 310
+ L+ ++ T+ ++W L E +TP +D +
Sbjct: 197 ELIRTTLDAEKVFTQ----GLNILEW-------L---------ENPSNTPDKDYLLSIPI 236
Query: 311 ESVP---LAQSLLN--AICDLL-FCP----DFTVASNKCTCQVFLML-----GTQDNLFI 355
S P + Q L + LL F P + + + + + + ++ F+
Sbjct: 237 -SCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 356 NYLS----------RIHRDEDFQFVLAGFSRLYQD------GNRT-----RGL---ALTR 391
+ R + E + + + +D G + L +
Sbjct: 295 SVRKAITVLFFIGVRCY--EAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 392 HLGTQDNLFINYLSRIH------RDEDFQFVLAGFSR-L--LNNPLL---------QTYL 433
++ + N + ++ V++G + L LN L Q+ +
Sbjct: 352 YV-NKTNSHLPAGKQVEISLVNGAK---NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 434 PNSTKKIEFHQELLVLFWKMCDYNKTLTQLAGF-SRLLN--NPLLQTYLPNSTKKIEFHQ 490
P S +K++F L + + F S LL + L+ L + F+
Sbjct: 408 PFSERKLKFSNRFLPVA-------------SPFHSHLLVPASDLINKDLVK--NNVSFNA 452
Query: 491 ELL 493
+ +
Sbjct: 453 KDI 455
Score = 62.4 bits (151), Expect = 9e-10
Identities = 92/549 (16%), Positives = 163/549 (29%), Gaps = 189/549 (34%)
Query: 548 LLKKFLYYVLKSSDVLDILVPILYHLNDSRADQSRVGLMHIGVFILLLLSGERNFGVRLN 607
L+ KFL YV S + S+VG V L L E + + N
Sbjct: 60 LVGKFLGYV------------------SSLVEPSKVGQFD-QVLNLCLTEFENCY-LEGN 99
Query: 608 KPYSAAVPMDIPVFTGLVLRADQSRVGLMHIGVFILLLLSGERNF---GVRLNKPYS--- 661
++ A + T LV + ++ +N+ + +P+
Sbjct: 100 DIHALAAKLLQENDTTLVKTKE------------LI------KNYITARIMAKRPFDKKS 141
Query: 662 ------AAVPMDIPVFT-----GNSINILMEDLKFLY--YVLKSSDVLDILVPILYHLND 708
A + + GN+ + E+L+ LY Y + D++ L L
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYF-EELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 709 SRADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYSAAVPMDIPVFTGTHADLLMIVFHK 768
+ D +V G+ IL L +K Y ++P+ P+ ++ + H
Sbjct: 201 TTLDAEKV-FTQ-GLNILEWLENP---SNTPDKDYLLSIPISCPLIG-----VIQLA-HY 249
Query: 769 VITSGHNRLQP--LFDCLFTILVNVSPYLKTLSMVASTKLLHLLEAFAS----PAFLYTG 822
V+T+ P L L + +V + A A +F +
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQ------GLVTAV-------AIAETDSWESFFVSV 296
Query: 823 ETNHHLVFFL----LEIFNNIIQYQFDVSPYLKTLSMVASTKLLHLLEAFASPAFLYTGE 878
++FF+ E + N + P S++ + L E SP +
Sbjct: 297 RKAITVLFFIGVRCYEAYPNT-----SLPP-----SILEDS--LENNEGVPSPMLSISNL 344
Query: 879 TNHHLVFFLLEIFNNIIQYQFDGNSNLVYTIIRKRQIFYALSNLPSDSASIHRALSVSG- 937
T + ++ + NS+L +Q+ +L N + L VSG
Sbjct: 345 TQEQVQDYVNKT-----------NSHLP----AGKQVEISLVNGA-------KNLVVSGP 382
Query: 938 -----G-----RKRSSP---------------------LP-------PLLTSAPSSPSAG 959
G RK +P LP LL A +
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 960 VEPSSPSMEGSKPALPAEPGTLNATLADTPGPDKAEDLQSIDS------CEYI------W 1007
+ ++ S +P DT DL+ + + I W
Sbjct: 443 LVKNNVSFNAKDIQIPVY---------DT---FDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 1008 ERGVGFATS 1016
E F +
Sbjct: 491 ETTTQFKAT 499
Score = 56.6 bits (136), Expect = 5e-08
Identities = 86/495 (17%), Positives = 139/495 (28%), Gaps = 164/495 (33%)
Query: 44 QDIFT-LIPSAEIRALREEAPSNLATLCYKAVEKLVNAVDSSCRMAHEQ--QAVLNCTRL 100
Q+ F ++P ++ P+ A L K + + + V+ S +Q L
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE--- 90
Query: 101 LTRLIPYIFEDMDWRGF--------FWSSLPSKSTSDENEGEGPDKAEDLQSIDSCEYIW 152
FE + + L EN+ E +++ YI
Sbjct: 91 --------FE----NCYLEGNDIHALAAKLLQ-----ENDTTLVKTKELIKN-----YI- 127
Query: 153 ERGVGFATSPARCPAHESA-----RTELLKLLL---------TCFSE-----TIYQPPQ- 192
A P SA +L+ F E Y
Sbjct: 128 -TARIMAKRPFD-KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 193 ---DASDNTFWNQFWSENVTNAQDIFTLIPAAEIRA-LR--EEAPSN--LAT-------- 236
S T +A+ +FT I L P L +
Sbjct: 186 DLIKFSAETLSEL--IRTTLDAEKVFTQ--GLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 237 -----LCYKAVEKLVNAVDSSCRMAHEQQAVLNCTR-LLTRLIPYIFEDMDWRGF----- 285
Y KL+ + + + ++ L+T + I E W F
Sbjct: 242 GVIQLAHYVVTAKLLGF--TPGELRSYLKGATGHSQGLVTAVA--IAETDSWESFFVSVR 297
Query: 286 ------FW-----------SSLPSKSTSDDNE-GEGS-TPAEDVESVPLAQ--SLLNAIC 324
F+ +SLP D E EG +P + ++ Q +N
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 325 DLLFCPDFTVASNKCTCQVFLMLGTQDNLFINYLSRIHRDEDFQFVLAGFSR-LYQDGNR 383
L + K QV + L +N + V++G + LY
Sbjct: 358 SHL-------PAGK---QVEISL-------VN--GA--K----NLVVSGPPQSLY----- 387
Query: 384 TRGLALT-RHLGTQDNLFINYLSRIH---RDEDF--QF--VLAGF-SRLLN--NPLLQTY 432
GL LT R L SRI R F +F V + F S LL + L+
Sbjct: 388 --GLNLTLRKAKAPSGLDQ---SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 433 LPNSTKKIEFHQELL 447
L + F+ + +
Sbjct: 443 LVK--NNVSFNAKDI 455
Score = 52.0 bits (124), Expect = 2e-06
Identities = 112/636 (17%), Positives = 166/636 (26%), Gaps = 270/636 (42%)
Query: 283 RGFFWSSLPSKSTSDDNEGEGSTPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKCTCQ 342
+ F LP + + E +TPAE L V
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAE------L------------------VGK------ 63
Query: 343 VFLMLGTQDNLFINYLSRI-------HRDEDFQFVLAGFSRLYQDGNRTRGLALT----- 390
F+ Y+S + D+ L F Y +GN LA
Sbjct: 64 -----------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 391 -RHLGTQDNLFINY----------LSRIHRDEDFQFVLAGFSRLL---------NNPL-- 428
L L NY + F+ V G ++L+ ++
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 429 LQ----TYLPNSTKKIEFHQELLV-LFWKMCDYNKTLTQLAGFS--RLLNNPLL---QTY 478
L+ TY I+F E L L D K TQ G + L NP + Y
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--GLNILEWLENPSNTPDKDY 230
Query: 479 L---PNSTKKIEFHQELLVLFWKMC---DYNKKFLYYVLKSSDVL--DILVPILYHLNDS 530
L P S I Q L + + L LK + ++ + DS
Sbjct: 231 LLSIPISCPLIGVIQ--LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 531 RADQSRVGLMHIGVFILLLKKFLYYVLKSSDVLDILVPILYHLNDSRADQSRVGLMHIGV 590
F + ++K + L IGV
Sbjct: 289 WES-----------FFVSVRKAITV-----------------------------LFFIGV 308
Query: 591 ------------FILLLLSGERNFGVRLNKPYSAAVPMDIPVFTGLVLRADQSRVGLM-- 636
+L S E N GV P S PM + + + L Q V
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGV----P-S---PM-LSI-SNLTQEQVQDYVNKTNS 358
Query: 637 --------HIGVFILLLLSGERNFGVRLNKPYSAAVPMDIPVFTGNSINILMEDLKFLYY 688
I L++G +N V +G
Sbjct: 359 HLPAGKQVEIS-----LVNGAKNL-----------------VVSGP-------------- 382
Query: 689 VLKSSDVLDILVPI-LYHLN--------DSRADQSRVGLMHIGVFILLLLSGER--NFGV 737
P LY LN S DQSR+ ER F
Sbjct: 383 ------------PQSLYGLNLTLRKAKAPSGLDQSRIPF------------SERKLKFSN 418
Query: 738 R-----------LNKPYSAAVPMDIPV--FTGTHADLLMIVFHKVITSGHN-R------L 777
R L P S + D+ + D+ + V+ G + R
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDGSDLRVLSGSIS 476
Query: 778 QPLFDCLFTILVNVSPYLKTLSMVASTKLLHLLEAF 813
+ + DC+ + V + T A+ H+L+ F
Sbjct: 477 ERIVDCIIRLPVK---WETTTQFKAT----HILD-F 504
Score = 42.7 bits (100), Expect = 8e-04
Identities = 47/304 (15%), Positives = 92/304 (30%), Gaps = 110/304 (36%)
Query: 193 DASDNTFWNQF-WS--ENVT-NAQDIFTLIPAAEIRALREEAPSNLATLCYKAV------ 242
+ +DN F + + +S + V N ++ + + +RE N + + ++ +
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE----NYSAMIFETIVDGKLK 1702
Query: 243 -EKLVNAVDSSCR--MAHEQQAVLNCTR------LLTRLIPYIFEDMDWRGFFWS----- 288
EK+ ++ ++ +L+ T+ L FED+ +G +
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA--AFEDLKSKGLIPADATFA 1760
Query: 289 --SLPSKSTSDDNEGE--------GSTPAEDVESVPLAQSLLNAICDLLF----CPDFTV 334
SL GE E + +++F V
Sbjct: 1761 GHSL----------GEYAALASLADVMSIESL-------------VEVVFYRGMTMQVAV 1797
Query: 335 ASNKCTCQVFLMLGTQDNLFINYLSRIHRDEDFQFVLAGFSRLYQDGNRTRGLALTRHLG 394
++ + M+ S E Q+V+ + RT L
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFS----QEALQYVVERVGK------RTGWL------- 1840
Query: 395 TQDNLFI-NYLSRIHRDEDFQFVLAG-------FSRLLNNPLLQTYLPNSTKKIEFHQEL 446
+ I NY E+ Q+V AG + +LN +KI+ EL
Sbjct: 1841 ----VEIVNYNV-----ENQQYVAAGDLRALDTVTNVLNF--------IKLQKIDI-IEL 1882
Query: 447 LVLF 450
Sbjct: 1883 QKSL 1886
Score = 39.3 bits (91), Expect = 0.010
Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 24/118 (20%)
Query: 925 DSASIHRALSVSGGRKRSSPLPPLLTSAPSSPSAGVEPSSPSMEGSKPALPAEPGTLNAT 984
D+ S R L++S G LL S A L + N
Sbjct: 2 DAYST-RPLTLSHGSLEHV----LLVPTASFFIASQ-------------LQEQ---FNKI 40
Query: 985 LADTPGPDKAEDLQSIDSCEYIWERGVGFATSPARCPAHESARTELLKLLLTCFSETI 1042
L + P A D + E + + +G+ +S P+ ++L L LT F
Sbjct: 41 LPE-PTEGFAADDEPTTPAE-LVGKFLGYVSSLVE-PSKVGQFDQVLNLCLTEFENCY 95
Score = 34.3 bits (78), Expect = 0.34
Identities = 44/273 (16%), Positives = 88/273 (32%), Gaps = 94/273 (34%)
Query: 25 DASDNTFWNQF-WS--ENVTNAQDIFTLIPSAEI-RALREEAPSNLATLCYKAV------ 74
+ +DN F + + +S + V N T+ E + +RE N + + ++ +
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE----NYSAMIFETIVDGKLK 1702
Query: 75 -EKLVNAVDSSCR--MAHEQQAVLNCTR------LLTRLIPYIFEDMDWRGFFWS----- 120
EK+ ++ ++ +L+ T+ L FED+ +G +
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA--AFEDLKSKGLIPADATFA 1760
Query: 121 --SLPSKSTSDENEGE--------GPDKAEDLQSIDSCEYIWERGVGFATSPARCPAHES 170
SL GE E L + ++ RG+ + P E
Sbjct: 1761 GHSL----------GEYAALASLADVMSIESLVEV-----VFYRGMTMQVA---VPRDEL 1802
Query: 171 ARTELL-------KLLLTCFSETIYQPPQDASDNTFW-----NQFWSENVTNAQDIFTLI 218
R+ ++ + E + + T W N + NV N Q +
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-Y---NVENQQ----YV 1854
Query: 219 PAAEIRALREEAPSNLATLCYKAVEKLVNAVDS 251
A ++RAL + + N ++
Sbjct: 1855 AAGDLRAL----------------DTVTNVLNF 1871
Score = 30.0 bits (67), Expect = 6.3
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 6 TKLNFR--QAVIQLTSKTQP-IDASDNTFWNQFWSENVTNAQDIFTLIPSA-----EIRA 57
T FR + ++ T TQP + + + S+ + A F A E A
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF-----AGHSLGEYAA 1769
Query: 58 L 58
L
Sbjct: 1770 L 1770
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A
{Saccharomyces cerevisiae} SCOP: a.118.1.9
Length = 480
Score = 33.6 bits (76), Expect = 0.40
Identities = 37/339 (10%), Positives = 105/339 (30%), Gaps = 36/339 (10%)
Query: 364 DEDFQF------VLAGFSRLYQDGNRTRGLALTRHLGTQDNLFINYLSRIHRDEDFQFVL 417
+ D +L + + + + G I+ LS ++ + V
Sbjct: 40 EIDASTAKALESILVKKNIGDGLSSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQ 99
Query: 418 AGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCDYNKTLTQLAGFSRLLNNPLLQT 477
+ LL++ ++F QE ++ ++ +L + ++
Sbjct: 100 NLIAELLSSD------KYGDDTVKFFQEDPKQLEQL--FDVSLKGDFQTVLISGFNVVSL 151
Query: 478 YLPNSTKKIEFHQELLVLFWKMCDYNKKFLYYVLKSSDVLDILVPILYHLNDSRADQSRV 537
+ N ++ ++LL + ++ D + + +L L + + R
Sbjct: 152 LVQNGLHNVKLVEKLLKNNNLINILQN------IEQMDTCYVCIRLLQEL--AVIPEYRD 203
Query: 538 GLMHIGVFILLLKKFLYYVLKSSDVLDILVPILYHLNDSRADQSRVGLMHIGVFILLLLS 597
+ + L+ +L+ + + I+ ++ Q L + + ++ LL+
Sbjct: 204 VIWLHEKKFM---PTLFKILQRATDSQLATRIVATNSNHLGIQ----LQYHSLLLIWLLT 256
Query: 598 GERNFGVRLNKPYSAAVPMDIPVFTGLVLRADQSRVGLMHIGVFILLLLSGERNFGVRLN 657
F D LV + +V + I + + + + +
Sbjct: 257 ----FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312
Query: 658 KPYSAA-VPMDIPVFTGNSIN--ILMEDLKFLYYVLKSS 693
+ + + + L +D+ L +L++
Sbjct: 313 QLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENE 351
Score = 30.9 bits (69), Expect = 2.9
Identities = 25/182 (13%), Positives = 55/182 (30%), Gaps = 19/182 (10%)
Query: 353 LFINYLSRIHRDEDFQFVLAGFSRLYQDGNRTRGLALTRHLGTQDNLFINYLSRIHRDED 412
I+ LS ++ + V + L ++ + L + + D
Sbjct: 81 PLIHLLSTSDNEDCKKSVQNLIAELLSS-DKYGDDTVKFFQEDPKQLEQLFDVSLKGDF- 138
Query: 413 FQFVLAGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCDYNKTLTQLAGFSRLLNN 472
Q VL +++ LL ++ K +E + L + + + T
Sbjct: 139 -QTVLISGFNVVS--LLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIR----- 190
Query: 473 PLLQTYLPNSTKKIEFHQELLVLFWKMCDYNKKFLYYVLKSSDVLDILVPILYHLNDSRA 532
LLQ E+ + W L+ +L+ + + I+ ++
Sbjct: 191 -LLQELAVIP----EYRD----VIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLG 241
Query: 533 DQ 534
Q
Sbjct: 242 IQ 243
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha;
oxidoreductase-transferase complex, electron transfer,
oxidoreductase; 1.90A {Moorella thermoacetica} SCOP:
e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A
3s2x_A
Length = 729
Score = 33.3 bits (76), Expect = 0.50
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 1085 VWTPTPEWVKSWKDKLPLQTIMRLLQVLVPQ--VEKICIDKGLTDESEILKFLQHGTLVG 1142
VW P KS KD L + + R ++ + + ++KI + T EIL +L+
Sbjct: 668 VWMP-----KSLKDFLHDEFVRRSVEEGLGEDFIDKIADETIGTTVDEILPYLEE----- 717
Query: 1143 LLPVPHPIL 1151
HP L
Sbjct: 718 ---KGHPAL 723
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.64
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 8/28 (28%)
Query: 958 AGVEPSSPSMEGSKPALPAEPGTLNATL 985
A ++ + S PAL + AT+
Sbjct: 27 ASLKLYAD---DSAPAL-----AIKATM 46
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 31.4 bits (71), Expect = 1.1
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 15/105 (14%)
Query: 810 LEAFASPAFLYTGETNHHLVFFLLEIFNNIIQYQFDVSPYLKTLSMVASTKLLHLLEAFA 869
LE S FL +L L F + + + + LL
Sbjct: 2 LENAGSRPFLADFNGFSYLELKGLHTFERDLGEKMALEMVFLARG---PSGLL------- 51
Query: 870 SPAFLYTGETNHHLV-FFLLEIFNNIIQYQFDGNSNLVYTIIRKR 913
LY G+ F L + N +++++D ++
Sbjct: 52 ----LYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAIIRSKEP 92
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 29.9 bits (67), Expect = 4.8
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 273 IPYIFEDMDWRGFF---WSSLPSKSTSDDNEGEGSTP 306
P+ D DW+ FF W L +D+E +G +
Sbjct: 255 QPFNITDADWKSFFVRLWGRLDLIDEEEDSEEDGDSM 291
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 29.0 bits (65), Expect = 6.2
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 818 FLYTGETNHHLVFFLLEIFNNIIQYQFDV 846
L+ G+ + L I + +Q +D+
Sbjct: 52 VLWIGKAAERADYMALAIVDGHLQLSYDL 80
Score = 28.7 bits (64), Expect = 9.4
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 873 FLYTGETNHHLVFFLLEIFNNIIQYQFD 900
L+ G+ + L I + +Q +D
Sbjct: 52 VLWIGKAAERADYMALAIVDGHLQLSYD 79
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 29.5 bits (65), Expect = 7.7
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 949 LTSAPSSPSAGVEPSSPSMEGSKPALPAEPGTLNATLADTPGPDKAEDLQS 999
L + S G+ SP + P +LN+ P K E ++
Sbjct: 130 LLLSSVKESTGMSSMSPFLRKVVK-----PSSLNSDKIPYVAPTKKEYIEL 175
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.5 bits (66), Expect = 9.9
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 15/82 (18%)
Query: 828 LVFFLLEIFNNIIQYQFDVSPYLK--TLSMVASTK----------LLHLLEAFASPAFLY 875
V+F +E + YQF + +L + + L++L + S F
Sbjct: 2410 RVYFAMEELSQFHLYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNR 2469
Query: 876 T---GETNHHLVFFLLEIFNNI 894
+ L F L ++
Sbjct: 2470 VTRTLLNDDKLTFALQLTIISV 2491
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,740,816
Number of extensions: 1051591
Number of successful extensions: 1997
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1969
Number of HSP's successfully gapped: 36
Length of query: 1196
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1092
Effective length of database: 3,798,009
Effective search space: 4147425828
Effective search space used: 4147425828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.3 bits)