RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8927
(1196 letters)
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 477
Score = 32.2 bits (73), Expect = 0.46
Identities = 28/223 (12%), Positives = 74/223 (33%), Gaps = 25/223 (11%)
Query: 399 LFINYLSRIHRDEDFQFVLAGFSRLLN-NPLLQTYLPNSTKKIEFHQELLVLFWKMCDYN 457
I+ LS ++ + V + LL+ + + + + L LF +
Sbjct: 78 PLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQ---LEQLFDVSLKGD 134
Query: 458 KTLTQLAGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCDYNKKFLYYVLKSSDVL 517
++GF+ + L+Q N ++ ++LL + + +
Sbjct: 135 FQTVLISGFNVVSL--LVQ----NGLHNVKLVEKLLKNNN--------LINILQNIEQMD 180
Query: 518 DILVPILYHLNDSRADQSRVGLMHIGVFILLLKKFLYYVLKSSDVLDILVPILYHLNDSR 577
V I + + R + + L+ +L+ + + I+ +
Sbjct: 181 TCYVCIRLLQELAVIPEYRDVIWLHEKKFMP---TLFKILQRATDSQLATRIV----ATN 233
Query: 578 ADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYSAAVPMDIPV 620
++ + L + + ++ LL+ F L + Y + + +
Sbjct: 234 SNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKL 276
Score = 31.4 bits (71), Expect = 0.71
Identities = 42/282 (14%), Positives = 83/282 (29%), Gaps = 57/282 (20%)
Query: 353 LFINYLSRIHRDEDFQFVLAGFSRLYQDGNRTRGLALTRHLGTQDNLFINYLSRIHRDED 412
I+ LS ++ + V + L + T +D + L + D
Sbjct: 78 PLIHLLSTSDNEDCKKSVQNLIAELLSS---DKYGDDTVKFFQEDPKQLEQLFDVSLKGD 134
Query: 413 FQFVLAGFSR------------------LLNNPLLQTYLPNSTKK------IEFHQELLV 448
FQ VL LL N L L N + I QEL V
Sbjct: 135 FQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV 194
Query: 449 ------LFWKMCDYNKTLTQLAGFSRLLNNPLLQTYLPNSTKKIEFHQ--ELLVLFWKMC 500
+ W + T R ++ L + ++ + L+L W +
Sbjct: 195 IPEYRDVIWLH-EKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL- 252
Query: 501 DYNKKF--------------LYYVLKSSD---VLDILVPILYHLNDSRADQSR---VGLM 540
+N F L ++K + V + + I+ +R Q + L+
Sbjct: 253 TFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL 312
Query: 541 HIGVFILLLKKFLYYVLKSSDVLDILVPILYHLNDSRADQSR 582
+G + ++ ++ + + L + + +
Sbjct: 313 LLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTS 354
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 177
Score = 30.3 bits (68), Expect = 0.90
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 1093 VKSWKDKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILKFLQHGTLVGLLPVPHPILI 1152
+ + ++M VP++EKI +++GL E K + L +I
Sbjct: 11 RPALMQQFGYSSVMA-----VPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPII 65
Query: 1153 RKYQ 1156
K +
Sbjct: 66 TKAK 69
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus
[TaxId: 274]}
Length = 180
Score = 29.9 bits (67), Expect = 1.2
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 1093 VKSWKDKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILKFLQHGTLVGLLPVPH---- 1148
+ Q + VP++EK+ I++GL + E + L+ L
Sbjct: 14 RPELIRRFGYQNVWE-----VPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAV 68
Query: 1149 ---PILIRKYQANSGTTTWFRTYMWG 1171
I ++ G R +
Sbjct: 69 TRAKKSISNFKLRKGMPIGLRVTLRR 94
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
{Basidomycetos fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 357
Score = 30.4 bits (68), Expect = 1.5
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 944 PLPPLLTSAPSSPSAGVEPSSPSMEGS-----KPALPAEPGTLNATLADTPGPDKAEDLQ 998
P+P T P+ A P +E S P L +PG + +A PD +
Sbjct: 294 PVPKPATGQPAMFPASTGPQ--DLELSCPSERFPTLTTQPGASQSLIA--HCPDGSMSCP 349
Query: 999 SI 1000
+
Sbjct: 350 GV 351
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 30.5 bits (69), Expect = 1.6
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 1085 VWTPTPEWVKSWKDKLPLQTIMRLLQVLVPQ--VEKICIDKGLTDESEILKFLQHGTLVG 1142
VW P KS KD L + + R ++ + + ++KI + T EIL +L+
Sbjct: 668 VWMP-----KSLKDFLHDEFVRRSVEEGLGEDFIDKIADETIGTTVDEILPYLEE----- 717
Query: 1143 LLPVPHPIL 1151
HP L
Sbjct: 718 ---KGHPAL 723
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli
[TaxId: 562]}
Length = 177
Score = 29.2 bits (65), Expect = 2.1
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 1093 VKSWKDKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILKFLQHGTLVGLLPVPHPILI 1152
VK + ++M+ VP+VEKI ++ G+ + K L + LI
Sbjct: 11 VKKLMTEFNYNSVMQ-----VPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLI 65
Query: 1153 RKYQAN 1158
K + +
Sbjct: 66 TKARKS 71
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 179
Score = 28.8 bits (64), Expect = 2.7
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 1093 VKSWKDKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILKFLQH 1137
V + K ++IM+ VP++EKI I+ G+ D + K L
Sbjct: 13 VPALMSKFNYKSIMQ-----VPKIEKIVINMGVGDAVQNPKALDS 52
>d1hn0a4 b.30.5.2 (A:619-899) Chondroitin ABC lyase I {Proteus
vulgaris [TaxId: 585]}
Length = 281
Score = 28.7 bits (64), Expect = 3.9
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 396 QDNLFINYLSR-IHRDEDFQFVLAGFSRLLNN 426
Q N + IHR +D L ++ + +
Sbjct: 2 QGFYAFNGGAFGIHRWQDKMVTLKAYNTNVWS 33
Score = 28.3 bits (63), Expect = 5.2
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 350 QDNLFINYLSR-IHRDEDFQFVLAGFSR 376
Q N + IHR +D L ++
Sbjct: 2 QGFYAFNGGAFGIHRWQDKMVTLKAYNT 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,325,303
Number of extensions: 199295
Number of successful extensions: 394
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 14
Length of query: 1196
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1100
Effective length of database: 1,089,516
Effective search space: 1198467600
Effective search space used: 1198467600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)