BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8928
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IMD|A Chain A, Structure Of Semet 2-Hydroxychromene-2-Carboxylate
Isomerase (Hcca Isomerase)
Length = 203
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 29 ETLASLERQIYAFEGSYLEDTQLYGNETLASLE 61
+T A++ER+++ +L D +GN+ L LE
Sbjct: 156 QTHAAIERKVFGVPTXFLGDEXWWGNDRLFXLE 188
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 49 TQLYGNETLASLERQIYAFEGSYLEDTQLYGN 80
T+ Y +T A++ER+++ +L D +GN
Sbjct: 150 TERYDEQTHAAIERKVFGVPTXFLGDEXWWGN 181
>pdb|2IME|A Chain A, 2-hydroxychromene-2-carboxylate Isomerase: A Kappa Class
Glutathione- S-transferase From Pseudomonas Putida
pdb|2IMF|A Chain A, 2-Hydroxychromene-2-Carboxylate Isomerase: A Kappa Class
Glutathione- S-Transferase From Pseudomonas Putida
Length = 203
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 29 ETLASLERQIYAFEGSYLEDTQLYGNETLASLE 61
+T A++ER+++ +L D +GN+ L LE
Sbjct: 156 QTHAAIERKVFGVPTMFLGDEMWWGNDRLFMLE 188
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 49 TQLYGNETLASLERQIYAFEGSYLEDTQLYGN 80
T+ Y +T A++ER+++ +L D +GN
Sbjct: 150 TERYDEQTHAAIERKVFGVPTMFLGDEMWWGN 181
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 2 SSKGGGAPAMNVRSELADLVKKKAEIA-ETLASLERQIYAFEGSYLEDTQLYGNETLASL 60
+S GGG M V ADL K+ E E +A+ + + YL E L
Sbjct: 178 ASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGK-----DEVYL--------EKLVER 224
Query: 61 ERQIYAFEGSYLEDTQLYGNVIRGWDRYLSSNKTNNTNMER 101
R + E L DT +GNV+ ++R S + N +ER
Sbjct: 225 ARHV---ESQILGDT--HGNVVHLFERDCSVQRRNQKVVER 260
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 2 SSKGGGAPAMNVRSELADLVKKKAEIA-ETLASLERQIYAFEGSYLEDTQLYGNETLASL 60
+S GGG M V ADL K+ E E +A+ + + YL E L
Sbjct: 178 ASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGK-----DEVYL--------EKLVER 224
Query: 61 ERQIYAFEGSYLEDTQLYGNVIRGWDRYLSSNKTNNTNMER 101
R + E L DT +GNV+ ++R S + N +ER
Sbjct: 225 ARHV---ESQILGDT--HGNVVHLFERDCSVQRRNQKVVER 260
>pdb|2WAM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Unknown
Function Protein Rv2714
pdb|2WAM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Unknown
Function Protein Rv2714
pdb|2WAM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Unknown
Function Protein Rv2714
Length = 351
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 21 VKKKAEIAETLASLERQIYAF 41
V+ AE+A+ +A+LERQ AF
Sbjct: 289 VQASAEVAQVVAALERQYDAF 309
>pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
Length = 716
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 11 MNVRSELADLVKKKAEIAETLASLERQIYAFEGSYLEDTQLYGNETLASLERQ 63
M +R E ++L K++ ++ LAS + + D Q YG++ + L+ +
Sbjct: 405 MKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER 457
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 19 DLVKKKAEIAETLASLERQIYAFEGSYLEDTQL-YGNETLASLERQIYAFEGSYLE---D 74
D++K + L++ YA+ +++D QL + N +L + + A G +E +
Sbjct: 58 DVIKNPXSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFN 117
Query: 75 TQLYGNVIRGWDRYLSSNKTNNTNME 100
QL ++ G++ ++ K N ++
Sbjct: 118 NQL---IVXGYNNFILKEKKINDXLK 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,395,785
Number of Sequences: 62578
Number of extensions: 122530
Number of successful extensions: 289
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 11
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)