Query psy8928
Match_columns 134
No_of_seqs 121 out of 168
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 23:02:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4abm_A Charged multivesicular 87.0 1.4 4.7E-05 29.8 5.3 26 15-40 45-70 (79)
2 2yy0_A C-MYC-binding protein; 86.4 1.4 4.7E-05 27.8 4.7 36 5-40 16-51 (53)
3 2ve7_C Kinetochore protein NUF 67.5 5.7 0.0002 31.6 4.2 76 9-88 142-219 (250)
4 1go4_E MAD1 (mitotic arrest de 58.9 15 0.00053 25.9 4.7 35 7-41 11-45 (100)
5 3ra3_B P2F; coiled coil domain 58.3 12 0.0004 20.7 3.1 24 18-41 3-26 (28)
6 2eqb_B RAB guanine nucleotide 58.1 19 0.00064 25.4 5.0 28 8-35 5-32 (97)
7 3c3g_A Alpha/beta peptide with 55.7 22 0.00074 20.6 4.1 26 11-36 3-28 (33)
8 2akf_A Coronin-1A; coiled coil 55.0 27 0.00093 19.9 4.8 29 12-40 3-31 (32)
9 3q8t_A Beclin-1; autophagy, AT 54.8 17 0.00059 25.0 4.3 28 13-40 23-50 (96)
10 1yhn_B RILP, RAB interacting l 54.7 8.5 0.00029 25.4 2.5 27 14-40 2-28 (65)
11 3ljm_A Coil Ser L9C; de novo d 54.3 27 0.00093 19.6 4.3 26 10-35 3-28 (31)
12 1hx1_B BAG-1, BAG-family molec 53.8 21 0.00071 25.9 4.7 58 5-64 1-58 (114)
13 2lw1_A ABC transporter ATP-bin 53.6 46 0.0016 22.0 6.3 29 12-40 19-47 (89)
14 2aze_B Transcription factor E2 53.3 23 0.00077 24.9 4.8 35 7-41 5-39 (106)
15 3he4_A Synzip6; heterodimeric 52.1 31 0.0011 21.6 4.8 23 18-40 27-49 (56)
16 3nmd_A CGMP dependent protein 50.9 27 0.00094 23.3 4.6 32 10-41 21-52 (72)
17 2wuj_A Septum site-determining 49.7 16 0.00054 22.8 3.1 28 11-38 30-57 (57)
18 2l5g_B Putative uncharacterize 49.0 34 0.0012 20.8 4.4 22 19-40 6-27 (42)
19 2bni_A General control protein 49.0 32 0.0011 20.1 4.1 26 11-36 4-29 (34)
20 2p4v_A Transcription elongatio 46.7 22 0.00074 26.2 4.0 57 8-69 9-67 (158)
21 1gp8_A Protein (scaffolding pr 46.5 13 0.00045 22.4 2.2 13 28-40 7-19 (40)
22 1fxk_A Prefoldin; archaeal pro 44.7 43 0.0015 22.1 4.9 18 23-40 73-90 (107)
23 4etp_A Kinesin-like protein KA 43.1 15 0.00053 30.8 3.0 42 7-48 2-43 (403)
24 3c3f_A Alpha/beta peptide with 43.0 44 0.0015 19.4 4.1 26 11-36 4-29 (34)
25 1rtm_1 Mannose-binding protein 42.5 37 0.0013 23.2 4.5 26 13-38 2-27 (149)
26 2zqm_A Prefoldin beta subunit 42.3 48 0.0016 22.2 5.0 18 23-40 78-95 (117)
27 3hnw_A Uncharacterized protein 42.2 52 0.0018 23.9 5.4 11 59-69 121-131 (138)
28 3q8t_A Beclin-1; autophagy, AT 42.1 47 0.0016 22.7 4.9 36 5-40 1-36 (96)
29 1zpy_A Hypothetical protein NE 42.0 24 0.00083 24.7 3.4 35 1-35 1-35 (95)
30 3htk_A Structural maintenance 41.2 54 0.0018 19.8 4.7 25 13-37 31-55 (60)
31 3azd_A Short alpha-tropomyosin 41.1 10 0.00034 22.1 1.1 33 6-38 2-34 (37)
32 2r2v_A GCN4 leucine zipper; co 40.5 53 0.0018 19.1 4.4 26 11-36 4-29 (34)
33 1kd8_B GABH BLL, GCN4 acid bas 40.1 51 0.0018 19.4 4.1 27 11-37 4-30 (36)
34 3s4r_A Vimentin; alpha-helix, 40.0 45 0.0015 22.7 4.5 31 10-40 58-88 (93)
35 1ci6_A Transcription factor AT 39.4 60 0.002 20.4 4.8 28 12-39 27-54 (63)
36 2eqb_B RAB guanine nucleotide 39.1 46 0.0016 23.3 4.5 40 8-47 26-65 (97)
37 1kd8_A GABH AIV, GCN4 acid bas 39.0 59 0.002 19.1 4.9 30 11-40 4-33 (36)
38 1uo4_A General control protein 37.3 61 0.0021 18.8 4.1 25 12-36 5-29 (34)
39 3u06_A Protein claret segregat 36.9 62 0.0021 27.3 5.8 30 11-40 6-35 (412)
40 3kin_B Kinesin heavy chain; mo 36.3 70 0.0024 22.4 5.2 32 9-40 83-114 (117)
41 1grj_A GREA protein; transcrip 35.7 28 0.00097 25.4 3.1 25 8-32 9-34 (158)
42 2fxo_A Myosin heavy chain, car 34.9 67 0.0023 22.6 4.9 23 18-40 72-94 (129)
43 1nkp_B MAX protein, MYC proto- 34.8 75 0.0026 20.5 4.8 29 12-40 51-79 (83)
44 1d7m_A Cortexillin I; coiled-c 34.7 66 0.0022 22.7 4.7 23 18-40 21-43 (101)
45 2wq1_A General control protein 34.3 68 0.0023 18.5 4.1 25 12-36 4-28 (33)
46 2wg5_A General control protein 34.1 37 0.0013 23.5 3.4 24 17-40 9-32 (109)
47 2oxj_A Hybrid alpha/beta pepti 33.8 71 0.0024 18.5 4.1 26 11-36 4-29 (34)
48 2xus_A Breast cancer metastasi 33.7 86 0.0029 19.4 5.2 30 24-67 15-44 (49)
49 3bas_A Myosin heavy chain, str 33.7 77 0.0026 21.1 4.8 33 9-41 22-54 (89)
50 3viq_B Mating-type switching p 33.6 37 0.0013 23.3 3.2 29 11-39 4-32 (85)
51 2zxx_A Geminin; coiled-coil, c 33.0 1.1E+02 0.0039 20.6 5.7 40 1-40 8-52 (79)
52 3rrk_A V-type ATPase 116 kDa s 32.2 77 0.0026 25.1 5.4 69 13-85 224-292 (357)
53 1wlq_A Geminin; coiled-coil; 2 31.3 1.3E+02 0.0043 20.6 5.7 40 1-40 12-56 (83)
54 3viq_A SWI5-dependent recombin 31.1 45 0.0015 24.0 3.5 22 19-40 4-25 (122)
55 3m48_A General control protein 30.6 81 0.0028 18.2 3.9 24 12-35 4-27 (33)
56 1zme_C Proline utilization tra 30.3 67 0.0023 19.4 3.8 23 16-38 45-67 (70)
57 1wt6_A Myotonin-protein kinase 30.3 96 0.0033 21.1 4.8 28 13-40 43-70 (81)
58 4ghu_A TNF receptor-associated 29.0 42 0.0015 25.1 3.2 13 30-42 22-34 (198)
59 2zvf_A Alanyl-tRNA synthetase; 28.6 82 0.0028 22.4 4.6 32 11-42 28-59 (171)
60 3u06_A Protein claret segregat 28.4 67 0.0023 27.1 4.6 33 9-41 11-43 (412)
61 2dq0_A Seryl-tRNA synthetase; 28.0 77 0.0026 27.0 5.0 34 7-40 68-101 (455)
62 3tnu_A Keratin, type I cytoske 28.0 1.6E+02 0.0054 20.7 6.1 24 13-36 50-73 (131)
63 3ol1_A Vimentin; structural ge 27.4 83 0.0028 22.0 4.3 26 13-38 74-99 (119)
64 3u1c_A Tropomyosin alpha-1 cha 27.2 1E+02 0.0035 21.0 4.7 30 10-39 25-54 (101)
65 4dci_A Uncharacterized protein 27.0 89 0.0031 23.3 4.6 34 11-44 24-58 (150)
66 3tnu_B Keratin, type II cytosk 26.8 1.6E+02 0.0056 20.5 6.1 22 14-35 49-70 (129)
67 2avr_X Adhesion A; antiparalle 26.4 36 0.0012 24.8 2.2 13 78-90 73-85 (119)
68 1l8d_A DNA double-strand break 26.3 1.5E+02 0.005 19.7 5.6 30 11-40 13-42 (112)
69 2hy6_A General control protein 25.4 1E+02 0.0036 17.8 4.1 26 11-36 4-29 (34)
70 3twe_A Alpha4H; unknown functi 25.1 90 0.0031 16.9 3.7 22 11-32 4-25 (27)
71 1fxk_A Prefoldin; archaeal pro 24.9 1.1E+02 0.0036 20.1 4.3 33 8-40 8-40 (107)
72 1l8d_A DNA double-strand break 24.4 1.1E+02 0.0039 20.3 4.4 27 14-40 70-96 (112)
73 3tkl_B LIDA protein, substrate 24.2 16 0.00055 29.7 0.0 39 7-45 20-58 (267)
74 2zqm_A Prefoldin beta subunit 23.4 1.1E+02 0.0039 20.2 4.3 32 9-40 14-45 (117)
75 3qne_A Seryl-tRNA synthetase, 22.7 1.2E+02 0.0043 26.3 5.3 32 9-40 72-103 (485)
76 3sja_C Golgi to ER traffic pro 22.6 99 0.0034 20.2 3.6 7 10-16 34-40 (65)
77 3vmx_A Voltage-gated hydrogen 22.4 1.5E+02 0.005 18.4 4.8 30 11-40 7-36 (48)
78 3k6c_A Uncharacterized protein 22.4 83 0.0028 21.9 3.4 34 1-34 1-34 (95)
79 1t3j_A Mitofusin 1; coiled coi 22.3 59 0.002 22.7 2.6 20 23-42 48-67 (96)
80 2ocy_A RAB guanine nucleotide 22.2 96 0.0033 23.3 4.0 39 9-47 59-97 (154)
81 3na7_A HP0958; flagellar bioge 21.9 1.8E+02 0.006 22.4 5.6 36 6-41 88-123 (256)
82 2lxm_B Charged multivesicular 21.8 41 0.0014 21.5 1.6 23 25-47 23-46 (57)
83 3etw_A Adhesin A; antiparallel 21.8 1.9E+02 0.0065 20.8 5.3 24 18-41 78-101 (119)
84 1nei_A Hypothetical protein YO 21.6 13 0.00045 24.2 -0.8 10 78-87 42-51 (60)
85 3swk_A Vimentin; cytoskeleton, 21.6 1.4E+02 0.0049 19.8 4.4 31 11-41 3-33 (86)
86 3u59_A Tropomyosin beta chain; 21.5 1.6E+02 0.0056 19.7 4.8 31 10-40 25-55 (101)
87 1r8d_A Transcription activator 21.5 1.6E+02 0.0056 19.4 4.8 11 28-38 81-91 (109)
88 2fxo_A Myosin heavy chain, car 21.3 1.6E+02 0.0054 20.6 4.8 31 10-40 22-52 (129)
89 1ic2_A Tropomyosin alpha chain 20.9 1.7E+02 0.0059 18.8 4.7 24 13-36 25-48 (81)
90 3rrk_A V-type ATPase 116 kDa s 20.8 1.3E+02 0.0045 23.8 4.8 33 10-42 101-136 (357)
91 1lq7_A Alpha3W; three helix bu 20.4 1.8E+02 0.0062 18.7 5.4 35 5-39 22-65 (67)
No 1
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=86.99 E-value=1.4 Score=29.78 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 15 SELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 15 ~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
+.-..+|++|+..|..|++++.+|..
T Consensus 45 ~~Al~aLkrKK~~E~qL~q~~~ql~~ 70 (79)
T 4abm_A 45 RAALQALKRKKRYEKQLAQIDGTLST 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44456889999999999999999887
No 2
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=86.40 E-value=1.4 Score=27.78 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=31.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 5 GGGAPAMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 5 ~~~~~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
+.++.|+.||+|+.+|-.|-..|.++++.|..++-.
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456889999999999999999999999999887643
No 3
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=67.47 E-value=5.7 Score=31.61 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--cccchhhHHHHhhhhhhcccccccCCccccceeccc
Q psy8928 9 PAMNVRSELADLVKKKAEIAETLASLERQIYAFEGSYLEDTQ--LYGNETLASLERQIYAFEGSYLEDTQLYGNVIRGWD 86 (134)
Q Consensus 9 ~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~Et~YL~~t~--~~g~e~~~~~e~qI~~~E~sYLeeT~~~GNIIkGfD 86 (134)
.|+++-++..+++.+-+++.+++..+|++|-+++.+-..+++ .+....+.+|-..|-...=+|=.+ ..+||||=
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~w~~~~~----~~~i~g~~ 217 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWEYECE----PGMVKGIH 217 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCEECSCCT----TTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhceeecccC----cchhceee
Confidence 355566666677777777777777777777776655444433 233444555554544444444332 44777775
Q ss_pred hh
Q psy8928 87 RY 88 (134)
Q Consensus 87 gy 88 (134)
..
T Consensus 218 ~~ 219 (250)
T 2ve7_C 218 HG 219 (250)
T ss_dssp --
T ss_pred ec
Confidence 43
No 4
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=58.90 E-value=15 Score=25.90 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=31.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8928 7 GAPAMNVRSELADLVKKKAEIAETLASLERQIYAF 41 (134)
Q Consensus 7 ~~~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~ 41 (134)
...|.+||+++..|-..+..|.++.+.||-+|-..
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999774
No 5
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=58.32 E-value=12 Score=20.73 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8928 18 ADLVKKKAEIAETLASLERQIYAF 41 (134)
Q Consensus 18 ~~ll~kk~~le~~l~~LE~qIy~~ 41 (134)
+.+-+|-..|..++++||-+|..+
T Consensus 3 rrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHh
Confidence 445566677788888888888773
No 6
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.08 E-value=19 Score=25.38 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=16.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 8 APAMNVRSELADLVKKKAEIAETLASLE 35 (134)
Q Consensus 8 ~~y~~lk~eL~~ll~kk~~le~~l~~LE 35 (134)
..|+.+|.+|+++-.+....+.++..|.
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4566666666666555555555555444
No 7
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=55.66 E-value=22 Score=20.63 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLER 36 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~ 36 (134)
.+|-.++.++|.++..|+++.+.|-.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35677889999999999999998854
No 8
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=54.98 E-value=27 Score=19.88 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 12 NVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 12 ~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
.|..+++.+-.--++|.+.++.||+.+-.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888899999999987654
No 9
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=54.76 E-value=17 Score=24.95 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 13 VRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 13 lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
|.++|.++-+.+..++.+|..++.+...
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~ 50 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAER 50 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555443
No 10
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=54.72 E-value=8.5 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 14 RSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 14 k~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
++||++.|+.|.+|...+--|++++--
T Consensus 2 ~~Elr~iLqERNELKa~vf~lqeEL~y 28 (65)
T 1yhn_B 2 REEFEQILQERNELKAKVFLLKEELAY 28 (65)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999887644
No 11
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=54.31 E-value=27 Score=19.63 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 10 AMNVRSELADLVKKKAEIAETLASLE 35 (134)
Q Consensus 10 y~~lk~eL~~ll~kk~~le~~l~~LE 35 (134)
++.|.++-..+-.|-+.|++.|.+||
T Consensus 3 wealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 12
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=53.83 E-value=21 Score=25.91 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=43.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHhhh
Q psy8928 5 GGGAPAMNVRSELADLVKKKAEIAETLASLERQIYAFEGSYLEDTQLYGNETLASLERQI 64 (134)
Q Consensus 5 ~~~~~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~Et~YL~~t~~~g~e~~~~~e~qI 64 (134)
|+.|+-+.--+.|+++-+.-..+.++|+.++++|-..|--+|.... ..+++..+.++|
T Consensus 1 ~~~peeE~~lK~L~~veksv~~~~kkl~~~~~el~~iekGFL~kel--~~eal~kldKri 58 (114)
T 1hx1_B 1 GNSPQEEVELKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDL--QAEALCKLDRRV 58 (114)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHH--HHHHHHTTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHh--HHHHHHHHHHHH
Confidence 4556666777888999899999999999999999987766776543 234555566655
No 13
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=53.59 E-value=46 Score=22.04 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 12 NVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 12 ~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
+.+++|..+-.+=..|+.+++.|+.+|.+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56788888888888888888888888877
No 14
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=53.25 E-value=23 Score=24.85 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=30.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8928 7 GAPAMNVRSELADLVKKKAEIAETLASLERQIYAF 41 (134)
Q Consensus 7 ~~~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~ 41 (134)
++....||+||.+|.++=+.||+.+..+.++|-..
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999884
No 15
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=52.14 E-value=31 Score=21.65 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 18 ADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 18 ~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
..+-..-..|+++++.||+.|.+
T Consensus 27 arlendnanlekdianlekdian 49 (56)
T 3he4_A 27 ARLENDNANLEKDIANLEKDIAN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHHHH
Confidence 33444455666666677666666
No 16
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.90 E-value=27 Score=23.33 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8928 10 AMNVRSELADLVKKKAEIAETLASLERQIYAF 41 (134)
Q Consensus 10 y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~ 41 (134)
..+|+..|+.....=++.|..++.||.+|-.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ek 52 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333345677777777777764
No 17
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=49.68 E-value=16 Score=22.83 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLERQI 38 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~qI 38 (134)
..+-.++..+.+....|.+++..|+++|
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456677777777777777777777654
No 18
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.02 E-value=34 Score=20.78 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy8928 19 DLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 19 ~ll~kk~~le~~l~~LE~qIy~ 40 (134)
+||++=..++.+++..|++|-.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~ 27 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISK 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888899999999999887
No 19
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=48.98 E-value=32 Score=20.05 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLER 36 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~ 36 (134)
.+|-.++.++|.++..|+++.+.|-.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 35777889999999999999998853
No 20
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=46.73 E-value=22 Score=26.21 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=31.9
Q ss_pred CchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc-cccccccccccchhhHHHHhhhhhhcc
Q psy8928 8 APAMNVRSELADLVK-KKAEIAETLASLERQIYAFE-GSYLEDTQLYGNETLASLERQIYAFEG 69 (134)
Q Consensus 8 ~~y~~lk~eL~~ll~-kk~~le~~l~~LE~qIy~~E-t~YL~~t~~~g~e~~~~~e~qI~~~E~ 69 (134)
.-|++|++||..|.. +|.++-+.++.--.+=--.| ++|.. +-+.+..+|.+|-.+|.
T Consensus 9 ~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~a-----ak~~q~~~e~rI~~L~~ 67 (158)
T 2p4v_A 9 EGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQY-----NKKRLREIDRRVRYLTK 67 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHH-----HHHHHHHHHHHHHHHHH
Confidence 458899999999955 66666665542211100112 33333 23556666666666665
No 21
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=46.46 E-value=13 Score=22.41 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHh
Q psy8928 28 AETLASLERQIYA 40 (134)
Q Consensus 28 e~~l~~LE~qIy~ 40 (134)
.+.++.||+|||-
T Consensus 7 ~d~I~aiEQqiyv 19 (40)
T 1gp8_A 7 AANKDAIRKQMDA 19 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999997
No 22
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=44.69 E-value=43 Score=22.13 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy8928 23 KKAEIAETLASLERQIYA 40 (134)
Q Consensus 23 kk~~le~~l~~LE~qIy~ 40 (134)
++..++..+..|+.++-.
T Consensus 73 ~~e~i~~~i~~le~~~~~ 90 (107)
T 1fxk_A 73 KLETLQLREKTIERQEER 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 23
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=43.10 E-value=15 Score=30.84 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=31.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy8928 7 GAPAMNVRSELADLVKKKAEIAETLASLERQIYAFEGSYLED 48 (134)
Q Consensus 7 ~~~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~Et~YL~~ 48 (134)
.+.-+.++.+++.+.+++.+|++++..++.++-+....|..+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999988887765555543
No 24
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=43.04 E-value=44 Score=19.40 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLER 36 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~ 36 (134)
.+|-.++.++|.++..|+++.+.|-.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35677889999999999999988854
No 25
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=42.52 E-value=37 Score=23.25 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 13 VRSELADLVKKKAEIAETLASLERQI 38 (134)
Q Consensus 13 lk~eL~~ll~kk~~le~~l~~LE~qI 38 (134)
|+++|..|-.+.+.|+..|..|...+
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~~ 27 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKLH 27 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 78889999999999999999998865
No 26
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=42.30 E-value=48 Score=22.18 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy8928 23 KKAEIAETLASLERQIYA 40 (134)
Q Consensus 23 kk~~le~~l~~LE~qIy~ 40 (134)
++..++..+..|+.++-.
T Consensus 78 ~~e~ie~~i~~le~~~~~ 95 (117)
T 2zqm_A 78 KIETLEVRLNALERQEKK 95 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.23 E-value=52 Score=23.91 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=5.3
Q ss_pred HHHhhhhhhcc
Q psy8928 59 SLERQIYAFEG 69 (134)
Q Consensus 59 ~~e~qI~~~E~ 69 (134)
.++++|-.+|+
T Consensus 121 ~l~~~~~~le~ 131 (138)
T 3hnw_A 121 KYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455544544
No 28
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.11 E-value=47 Score=22.68 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=27.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 5 GGGAPAMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 5 ~~~~~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
|++..-+.+..+|+++......|-.+|..||.+=-.
T Consensus 1 ~~~~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~ 36 (96)
T 3q8t_A 1 GPGSDSEQLQRELKELALEEERLIQELEDVEKNRKV 36 (96)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456677888999999999888888888888776444
No 29
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=42.03 E-value=24 Score=24.68 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=29.7
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 1 MSSKGGGAPAMNVRSELADLVKKKAEIAETLASLE 35 (134)
Q Consensus 1 ~~~~~~~~~y~~lk~eL~~ll~kk~~le~~l~~LE 35 (134)
|++.|--.++++|..+-+++..-.+.|..++.++.
T Consensus 1 m~~~~~he~~~~ls~~~~d~~rai~aL~~EleAI~ 35 (95)
T 1zpy_A 1 MANDGYFEPTQELSDETRDMHRAIISLREELEAVD 35 (95)
T ss_dssp ---CCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCCHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 88889899999999999999999999999999873
No 30
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.23 E-value=54 Score=19.82 Aligned_cols=25 Identities=12% Similarity=0.314 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 13 VRSELADLVKKKAEIAETLASLERQ 37 (134)
Q Consensus 13 lk~eL~~ll~kk~~le~~l~~LE~q 37 (134)
++..|..+...-..+.+++..++.+
T Consensus 31 ~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 31 AKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444333
No 31
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=41.12 E-value=10 Score=22.11 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 6 GGAPAMNVRSELADLVKKKAEIAETLASLERQI 38 (134)
Q Consensus 6 ~~~~y~~lk~eL~~ll~kk~~le~~l~~LE~qI 38 (134)
+++.-+.||++++.+....-.+++++..++.++
T Consensus 2 g~~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 2 GSSSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp ----CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667788888888888888888888777654
No 32
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=40.53 E-value=53 Score=19.06 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLER 36 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~ 36 (134)
.+|-.++.+++.++..|+++++.|..
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35667888999999999999988854
No 33
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=40.12 E-value=51 Score=19.36 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLERQ 37 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~q 37 (134)
.+|..+..+|+.++..|+++.+.|-.-
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 467788899999999999998888543
No 34
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=39.98 E-value=45 Score=22.67 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 10 AMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 10 y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
-.+||+.+.++...|..|+-+++.|...+.+
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888999999999999999999888876
No 35
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.44 E-value=60 Score=20.42 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 12 NVRSELADLVKKKAEIAETLASLERQIY 39 (134)
Q Consensus 12 ~lk~eL~~ll~kk~~le~~l~~LE~qIy 39 (134)
.|..++.+|-.+...|..++..|+.+|-
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666666665544
No 36
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.10 E-value=46 Score=23.35 Aligned_cols=40 Identities=13% Similarity=0.268 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy8928 8 APAMNVRSELADLVKKKAEIAETLASLERQIYAFEGSYLE 47 (134)
Q Consensus 8 ~~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~Et~YL~ 47 (134)
+++.+|+.+|..--.+|...+....+|++++-++=+.-|.
T Consensus 26 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 26 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888899999999999999998885343333
No 37
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=38.97 E-value=59 Score=19.10 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
.+|-.+..+++.++..|+++.+.|..-+-.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 467788899999999999999999776543
No 38
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.26 E-value=61 Score=18.81 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 12 NVRSELADLVKKKAEIAETLASLER 36 (134)
Q Consensus 12 ~lk~eL~~ll~kk~~le~~l~~LE~ 36 (134)
+|-.+..++|.++..|+++.+.|-.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5667788999999999999888743
No 39
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.94 E-value=62 Score=27.32 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
..|+.+|..+.+++++|+++...++.++-.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~ 35 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELET 35 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665555555554444443
No 40
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=36.25 E-value=70 Score=22.41 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 9 PAMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 9 ~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
..+.++++++....+-+.|.+.+..||.+|-+
T Consensus 83 ~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 83 TAEEWKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888888888765
No 41
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=35.65 E-value=28 Score=25.45 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=17.7
Q ss_pred CchHHHHHHHHHHHH-HHHHHHHHHH
Q psy8928 8 APAMNVRSELADLVK-KKAEIAETLA 32 (134)
Q Consensus 8 ~~y~~lk~eL~~ll~-kk~~le~~l~ 32 (134)
.-|++|++||..|.. +|.++-+.+.
T Consensus 9 ~g~~~L~~El~~L~~~~rp~i~~~i~ 34 (158)
T 1grj_A 9 RGAEKLREELDFLKSVRRPEIIAAIA 34 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhHhhHH
Confidence 358899999999987 5655554443
No 42
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=34.89 E-value=67 Score=22.64 Aligned_cols=23 Identities=13% Similarity=0.407 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 18 ADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 18 ~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
..++.+|..|+..|.-++..+-+
T Consensus 72 ~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 72 DQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 43
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.77 E-value=75 Score=20.51 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 12 NVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 12 ~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
.|+.+...+...+..|..+...|+++|-.
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666677777777777777655
No 44
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=34.70 E-value=66 Score=22.68 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 18 ADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 18 ~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
.+++++|.+|+.-|+.|+.+-..
T Consensus 21 eeL~kQk~eL~~~l~~l~~e~~~ 43 (101)
T 1d7m_A 21 EQLIKQKDQLNSLLASLESEGAE 43 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999888555
No 45
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=34.30 E-value=68 Score=18.48 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 12 NVRSELADLVKKKAEIAETLASLER 36 (134)
Q Consensus 12 ~lk~eL~~ll~kk~~le~~l~~LE~ 36 (134)
+|-.+..+++.++..|+++.+.|..
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5667788899999999888888743
No 46
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=34.05 E-value=37 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 17 LADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 17 L~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
++++...++.+.+++..++++|-.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~ 32 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVAR 32 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777766
No 47
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.77 E-value=71 Score=18.52 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLER 36 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~ 36 (134)
.+|-.+..+||.++..|+++.+.|-.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35677888999999999999888753
No 48
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=33.71 E-value=86 Score=19.43 Aligned_cols=30 Identities=13% Similarity=0.383 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHhhhhhh
Q psy8928 24 KAEIAETLASLERQIYAFEGSYLEDTQLYGNETLASLERQIYAF 67 (134)
Q Consensus 24 k~~le~~l~~LE~qIy~~Et~YL~~t~~~g~e~~~~~e~qI~~~ 67 (134)
=-.|++++..|=+|+|+ +.+..|++++.+.
T Consensus 15 l~~LEkqF~~LkEqlY~--------------ERl~ql~~~Leel 44 (49)
T 2xus_A 15 MLDLEKQFSELKEKLFR--------------ERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 34678888889899999 7888888887654
No 49
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=33.67 E-value=77 Score=21.10 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8928 9 PAMNVRSELADLVKKKAEIAETLASLERQIYAF 41 (134)
Q Consensus 9 ~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~ 41 (134)
++.+++..|...-..|+.|+.....|.++.-++
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777888888888888888887664
No 50
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.61 E-value=37 Score=23.31 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLERQIY 39 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~qIy 39 (134)
+.|+.++..|-.++.+|+.++..++.++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777777777777777777777766554
No 51
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=33.04 E-value=1.1e+02 Score=20.59 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=28.8
Q ss_pred CCCCCCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 1 MSSKGGGAPA-----MNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 1 ~~~~~~~~~y-----~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
|+.-+++..| ++=|.-|.+.|+.-++|-+++..++.+|-.
T Consensus 8 ~~~e~Pse~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~ 52 (79)
T 2zxx_A 8 ISKENPSSQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIAR 52 (79)
T ss_dssp --CCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555 345668899999999999988888888755
No 52
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=32.21 E-value=77 Score=25.15 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHhhhhhhcccccccCCccccceecc
Q psy8928 13 VRSELADLVKKKAEIAETLASLERQIYAFEGSYLEDTQLYGNETLASLERQIYAFEGSYLEDTQLYGNVIRGW 85 (134)
Q Consensus 13 lk~eL~~ll~kk~~le~~l~~LE~qIy~~Et~YL~~t~~~g~e~~~~~e~qI~~~E~sYLeeT~~~GNIIkGf 85 (134)
....+.++-.+...++..+..++++|...=..+.. ...........++.+|+.-. ++..|. .--|+.||
T Consensus 224 p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~--~l~~~~~~l~~~~~~~~~~~-~~~~~~-~~~~~~gW 292 (357)
T 3rrk_A 224 LGKAAARMKERARLAPEELVGIREEVARLSRESGE--ALIALWTRAKDEVARYKAVA-DMAAGK-YGAALMGW 292 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHTTC-CSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-hhcccC-cEEEEEEE
Confidence 33444555555555555555555555442111100 01122344556777777664 344443 34556666
No 53
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=31.29 E-value=1.3e+02 Score=20.62 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=28.4
Q ss_pred CCCCCCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 1 MSSKGGGAPA-----MNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 1 ~~~~~~~~~y-----~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
|++-+++..| ++=|..|.+.|+.=++|-+.+..++.+|-.
T Consensus 12 ~~~e~pse~YWk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~ 56 (83)
T 1wlq_A 12 ISKENPSSQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIAR 56 (83)
T ss_dssp --CCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666 334667888888888888888888888766
No 54
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=31.14 E-value=45 Score=24.00 Aligned_cols=22 Identities=14% Similarity=0.451 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy8928 19 DLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 19 ~ll~kk~~le~~l~~LE~qIy~ 40 (134)
+|+++++.|+.++..|+.+|-.
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~ 25 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLIT 25 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666533
No 55
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=30.64 E-value=81 Score=18.18 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 12 NVRSELADLVKKKAEIAETLASLE 35 (134)
Q Consensus 12 ~lk~eL~~ll~kk~~le~~l~~LE 35 (134)
+|-.+..+|+.++..|+++.+.|-
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 567788899999999999888874
No 56
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=30.28 E-value=67 Score=19.37 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 16 ELADLVKKKAEIAETLASLERQI 38 (134)
Q Consensus 16 eL~~ll~kk~~le~~l~~LE~qI 38 (134)
.+.+|..+-..|+..|+.|+..|
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666554
No 57
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=30.26 E-value=96 Score=21.13 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 13 VRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 13 lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
+..+|++.-++-+.|..++.+|+.++..
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777777778777777766
No 58
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=28.96 E-value=42 Score=25.09 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhc
Q psy8928 30 TLASLERQIYAFE 42 (134)
Q Consensus 30 ~l~~LE~qIy~~E 42 (134)
+|..||+++-..|
T Consensus 22 ~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 22 RLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555544
No 59
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=28.62 E-value=82 Score=22.35 Aligned_cols=32 Identities=6% Similarity=0.103 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLERQIYAFE 42 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~E 42 (134)
+++...+..++...+++++++..|..++...+
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888899999999999999888877744
No 60
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.41 E-value=67 Score=27.09 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8928 9 PAMNVRSELADLVKKKAEIAETLASLERQIYAF 41 (134)
Q Consensus 9 ~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~ 41 (134)
+-..|+++++++.++-+++..++..++++++..
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 43 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQS 43 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788999999999999999999999999884
No 61
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=28.04 E-value=77 Score=27.01 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=27.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 7 GAPAMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 7 ~~~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
+...+.|+.+.+++-.+-+.|++++..+|++|..
T Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 68 GEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888888888888888876
No 62
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.99 E-value=1.6e+02 Score=20.67 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 13 VRSELADLVKKKAEIAETLASLER 36 (134)
Q Consensus 13 lk~eL~~ll~kk~~le~~l~~LE~ 36 (134)
|..+|..+...|..|+..|+.+|.
T Consensus 50 L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 50 LEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444454555555555555554444
No 63
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=27.41 E-value=83 Score=22.02 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 13 VRSELADLVKKKAEIAETLASLERQI 38 (134)
Q Consensus 13 lk~eL~~ll~kk~~le~~l~~LE~qI 38 (134)
||+.+.++-..|-.|+.++..|.++|
T Consensus 74 lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 74 FRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 64
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.21 E-value=1e+02 Score=20.96 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 10 AMNVRSELADLVKKKAEIAETLASLERQIY 39 (134)
Q Consensus 10 y~~lk~eL~~ll~kk~~le~~l~~LE~qIy 39 (134)
++.+..+++++-.+..+++.++..|...|-
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344445555555555555555444444443
No 65
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=27.00 E-value=89 Score=23.27 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=26.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy8928 11 MNVRSEL-ADLVKKKAEIAETLASLERQIYAFEGS 44 (134)
Q Consensus 11 ~~lk~eL-~~ll~kk~~le~~l~~LE~qIy~~Et~ 44 (134)
+.+|.+| +++-.....+|.+|..||-|.-...++
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e 58 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQ 58 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777 667778889999999999888775433
No 66
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.82 E-value=1.6e+02 Score=20.48 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8928 14 RSELADLVKKKAEIAETLASLE 35 (134)
Q Consensus 14 k~eL~~ll~kk~~le~~l~~LE 35 (134)
..+|..+...+..|+..|+.+|
T Consensus 49 ~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 49 RAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 67
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=26.36 E-value=36 Score=24.78 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=8.6
Q ss_pred cccceeccchhhc
Q psy8928 78 YGNVIRGWDRYLS 90 (134)
Q Consensus 78 ~GNIIkGfDgylk 90 (134)
|+++++=|+.+.+
T Consensus 73 Y~~L~KkYk~~~~ 85 (119)
T 2avr_X 73 YQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5677777766654
No 68
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.28 E-value=1.5e+02 Score=19.72 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
+.++.+|..+...+..+..++..+++.+..
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666666655555
No 69
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=25.42 E-value=1e+02 Score=17.79 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLER 36 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~ 36 (134)
.+|-.+..+|+.++..|+++.+.|-.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35667888999999999999888854
No 70
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.12 E-value=90 Score=16.95 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8928 11 MNVRSELADLVKKKAEIAETLA 32 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~ 32 (134)
..|-++|.++..+-++|.+.|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888777777777664
No 71
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.95 E-value=1.1e+02 Score=20.11 Aligned_cols=33 Identities=6% Similarity=0.148 Sum_probs=24.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 8 APAMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 8 ~~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
+.|..+++++..+..++..++.++..++.-+-.
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~E 40 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888888888777665444
No 72
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.37 E-value=1.1e+02 Score=20.29 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 14 RSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 14 k~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
..++..+-.+-..|..++..|+.+|..
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~ 96 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555544444
No 73
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=24.18 E-value=16 Score=29.68 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy8928 7 GAPAMNVRSELADLVKKKAEIAETLASLERQIYAFEGSY 45 (134)
Q Consensus 7 ~~~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~Et~Y 45 (134)
.++|+..-+...+-|+|-+.|++.|++||+|=-+.++-|
T Consensus 20 ~~~ye~ai~~~qen~~k~e~L~~rl~kLE~qq~~lt~KY 58 (267)
T 3tkl_B 20 LDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKY 58 (267)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777788889999999999999977755555
No 74
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.45 E-value=1.1e+02 Score=20.20 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 9 PAMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 9 ~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
.|..+++++..+..++..++.++..++.-+-.
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~e 45 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKALDE 45 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777766766666666666554433
No 75
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.70 E-value=1.2e+02 Score=26.29 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 9 PAMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 9 ~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
..+.|+++++++-.+-+.|++++..+|++|..
T Consensus 72 ~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 72 DAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777778888878777766
No 76
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=22.59 E-value=99 Score=20.17 Aligned_cols=7 Identities=0% Similarity=-0.202 Sum_probs=2.5
Q ss_pred hHHHHHH
Q psy8928 10 AMNVRSE 16 (134)
Q Consensus 10 y~~lk~e 16 (134)
|.+|++.
T Consensus 34 WaKL~Rk 40 (65)
T 3sja_C 34 WTKNNRK 40 (65)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 77
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.38 E-value=1.5e+02 Score=18.36 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
.+||.-...+..+-.+|+..=+.+|++|.+
T Consensus 7 ~kLKe~n~~L~~kv~~Le~~c~~~eQEieR 36 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHLEFSCSEKEQEIER 36 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 467888888999999999999999999987
No 78
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=22.35 E-value=83 Score=21.95 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=27.9
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 1 MSSKGGGAPAMNVRSELADLVKKKAEIAETLASL 34 (134)
Q Consensus 1 ~~~~~~~~~y~~lk~eL~~ll~kk~~le~~l~~L 34 (134)
|++.|--.+.++|..+-+++..-++.|-.+|.++
T Consensus 1 m~~~~yhep~e~Ls~e~~d~~Rai~sl~~EleAI 34 (95)
T 3k6c_A 1 MANDGYFEPTQELSDETRDMHRAIISLREELEAV 34 (95)
T ss_dssp ---CCCCSCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCCHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 7888888889999999999999999999999877
No 79
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.26 E-value=59 Score=22.74 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy8928 23 KKAEIAETLASLERQIYAFE 42 (134)
Q Consensus 23 kk~~le~~l~~LE~qIy~~E 42 (134)
-++.|+++++.|+++|-..|
T Consensus 48 t~~eL~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888743
No 80
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.22 E-value=96 Score=23.25 Aligned_cols=39 Identities=13% Similarity=0.277 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy8928 9 PAMNVRSELADLVKKKAEIAETLASLERQIYAFEGSYLE 47 (134)
Q Consensus 9 ~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~Et~YL~ 47 (134)
++..|..+|.+--.+|...+....+||+++-++=+.-|.
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777777777777777775333333
No 81
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.89 E-value=1.8e+02 Score=22.40 Aligned_cols=36 Identities=8% Similarity=0.045 Sum_probs=26.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8928 6 GGAPAMNVRSELADLVKKKAEIAETLASLERQIYAF 41 (134)
Q Consensus 6 ~~~~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~ 41 (134)
+.-+|..|.+++..+-.+...+++++..+..+|-.+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888887777877777666666554
No 82
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=21.81 E-value=41 Score=21.51 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhc-ccccc
Q psy8928 25 AEIAETLASLERQIYAFE-GSYLE 47 (134)
Q Consensus 25 ~~le~~l~~LE~qIy~~E-t~YL~ 47 (134)
-.|+.+|..|+++..--+ +.||.
T Consensus 23 dEL~aELe~LeqE~~~~~~~syL~ 46 (57)
T 2lxm_B 23 DDLEAELDALGDELLADEDSSYLD 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchHHH
Confidence 578899999999875322 34444
No 83
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=21.76 E-value=1.9e+02 Score=20.77 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8928 18 ADLVKKKAEIAETLASLERQIYAF 41 (134)
Q Consensus 18 ~~ll~kk~~le~~l~~LE~qIy~~ 41 (134)
+++-.-|++|+++|...|+-|.+|
T Consensus 78 k~Y~~~~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 78 SKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677888888888777775
No 84
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=21.64 E-value=13 Score=24.20 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=7.9
Q ss_pred cccceeccch
Q psy8928 78 YGNVIRGWDR 87 (134)
Q Consensus 78 ~GNIIkGfDg 87 (134)
.=|||||||.
T Consensus 42 LvniVrgYd~ 51 (60)
T 1nei_A 42 LVNTVRSYDT 51 (60)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHhcccc
Confidence 3599999985
No 85
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.57 E-value=1.4e+02 Score=19.76 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLERQIYAF 41 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~qIy~~ 41 (134)
.+||+++..+...|..|+-+++.+...+-++
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf 33 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRL 33 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777776666654
No 86
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.51 E-value=1.6e+02 Score=19.70 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 10 AMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 10 y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
++.+..+++++-.+..+++.++..|...|-.
T Consensus 25 ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~ 55 (101)
T 3u59_A 25 AEQAEADKKQAEDRCKQLEEEQQGLQKKLKG 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445555555555555555555555544443
No 87
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.46 E-value=1.6e+02 Score=19.41 Aligned_cols=11 Identities=9% Similarity=0.009 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy8928 28 AETLASLERQI 38 (134)
Q Consensus 28 e~~l~~LE~qI 38 (134)
++.++.|+++|
T Consensus 81 ~~~~~~l~~~i 91 (109)
T 1r8d_A 81 QSQKEILMKKK 91 (109)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 88
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=21.33 E-value=1.6e+02 Score=20.64 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 10 AMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 10 y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
+.+|+..|......|+.|+.....|.+++-+
T Consensus 22 l~~lke~l~k~e~~r~ele~~~~~l~~Ek~~ 52 (129)
T 2fxo_A 22 FTRLKEALEKSEARRKELEEKMVSLLQEKND 52 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778888888888777777655
No 89
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=20.93 E-value=1.7e+02 Score=18.84 Aligned_cols=24 Identities=8% Similarity=0.317 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 13 VRSELADLVKKKAEIAETLASLER 36 (134)
Q Consensus 13 lk~eL~~ll~kk~~le~~l~~LE~ 36 (134)
+..+|++.-++..+++.++..|..
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~k 48 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQK 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333344443343344443333333
No 90
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.79 E-value=1.3e+02 Score=23.77 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhc
Q psy8928 10 AMNVRSELADLVKKKAEIAETLASLERQ---IYAFE 42 (134)
Q Consensus 10 y~~lk~eL~~ll~kk~~le~~l~~LE~q---Iy~~E 42 (134)
.+++-.++.++.+++.+|+.++..|+++ |-..+
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 3456677888888899999999988888 66644
No 91
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=20.45 E-value=1.8e+02 Score=18.68 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q psy8928 5 GGGAPAMNVRSELADLVKKK---------AEIAETLASLERQIY 39 (134)
Q Consensus 5 ~~~~~y~~lk~eL~~ll~kk---------~~le~~l~~LE~qIy 39 (134)
||+-..+.|++.-.++-++- +..+++...||.+|-
T Consensus 22 ggggrieelkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 22 GGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 56666777777666554442 345777777777774
Done!