Query psy8928
Match_columns 134
No_of_seqs 121 out of 168
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 23:02:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8928.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8928hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2azeb1 e.63.1.2 (B:201-301) T 45.5 17 0.0012 23.7 4.8 31 10-40 3-33 (101)
2 d1seta1 a.2.7.1 (A:1-110) Sery 37.2 30 0.0022 21.8 5.0 30 11-40 67-96 (110)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 33.8 40 0.0029 20.4 5.0 30 11-40 55-84 (88)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 30.0 34 0.0025 21.5 4.3 33 8-40 8-40 (107)
5 d1r8da_ a.6.1.3 (A:) Multidrug 29.9 54 0.0039 20.1 5.3 30 11-40 78-107 (109)
6 d1j2ga2 d.96.1.4 (A:159-312) U 25.9 12 0.0009 26.3 1.5 23 84-115 25-48 (154)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 25.8 47 0.0034 21.2 4.4 24 17-40 3-26 (133)
8 d1nlwa_ a.38.1.1 (A:) Mad prot 25.0 61 0.0044 19.1 4.6 27 12-38 51-77 (79)
9 d2f23a1 a.2.1.1 (A:3-77) GreA 21.7 56 0.004 19.9 3.9 25 8-32 8-32 (75)
10 d2yzca2 d.96.1.4 (A:142-297) U 21.2 17 0.0012 25.7 1.4 23 84-115 21-44 (156)
11 d1lvfa_ a.47.2.1 (A:) Syntaxin 20.8 53 0.0039 20.8 3.9 29 9-40 39-67 (106)
12 d2ibaa2 d.96.1.4 (A:137-295) U 20.7 18 0.0013 25.6 1.5 23 84-115 22-45 (159)
13 d1nkpb_ a.38.1.1 (B:) Max prot 20.6 82 0.006 18.6 4.8 29 12-40 51-79 (83)
No 1
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.49 E-value=17 Score=23.71 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 10 AMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 10 y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
...|++||.+|-++-+.||+-+..+.++|-.
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~ 33 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999887
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=37.22 E-value=30 Score=21.80 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
+.++++.+.+-.+-..|+.++..+|.+++.
T Consensus 67 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 67 EALIARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666677777666666
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.84 E-value=40 Score=20.41 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
..|++++..+..++..|..+.+.|.++|-.
T Consensus 55 ~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 84 (88)
T d1nkpa_ 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777788777777777655
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.96 E-value=34 Score=21.51 Aligned_cols=33 Identities=6% Similarity=0.148 Sum_probs=27.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 8 APAMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 8 ~~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
+.|..++++|..+..++.+|+.++...+.-+-.
T Consensus 8 ~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~e 40 (107)
T d1fxka_ 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999988877666554
No 5
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=29.89 E-value=54 Score=20.15 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 11 MNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 11 ~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
..+......+.+++..|++.++.|++.|-.
T Consensus 78 ~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 107 (109)
T d1r8da_ 78 AALQSQKEILMKKKQRMDEMIQTIDRTLLS 107 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555666777777777777776643
No 6
>d1j2ga2 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Bacillus sp., strain TB-90 [TaxId: 1409]}
Probab=25.87 E-value=12 Score=26.33 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=15.5
Q ss_pred ccchhhcCCCCCCcchhcccCCCC-Cccccccc
Q psy8928 84 GWDRYLSSNKTNNTNMERNRKFKE-AERLFSLS 115 (134)
Q Consensus 84 GfDgylk~~~~~~~~~~r~~~~~d-~DRiFSlS 115 (134)
||.||++-.- ..++| .|||||-+
T Consensus 25 ~F~GFvrDeY---------TTLpet~DRilaT~ 48 (154)
T d1j2ga2 25 SFVGFIRDEY---------TTLPEDSNRPLFVY 48 (154)
T ss_dssp CBCSCCCSTT---------CCCCCBSSCCEEEE
T ss_pred cccccccCcc---------ccCCCcccceEEEE
Confidence 8999997642 22333 79999843
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.78 E-value=47 Score=21.18 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 17 LADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 17 L~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
|.++......++.+|..|+++|..
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~ 26 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEA 26 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555556655555555
No 8
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.04 E-value=61 Score=19.09 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 12 NVRSELADLVKKKAEIAETLASLERQI 38 (134)
Q Consensus 12 ~lk~eL~~ll~kk~~le~~l~~LE~qI 38 (134)
.|+.++..+...+..|..+...|.++|
T Consensus 51 ~L~~~~~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 51 KLEDSDRKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666666666665554
No 9
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=21.69 E-value=56 Score=19.95 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=18.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q psy8928 8 APAMNVRSELADLVKKKAEIAETLA 32 (134)
Q Consensus 8 ~~y~~lk~eL~~ll~kk~~le~~l~ 32 (134)
.-|.+|+.+|..+-.+|.++-+.+.
T Consensus 8 eg~~kL~~EL~~l~~~r~ei~~~I~ 32 (75)
T d2f23a1 8 AGYERLMQQLERERERLQEATKILQ 32 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4589999999887666666665554
No 10
>d2yzca2 d.96.1.4 (A:142-297) Urate oxidase (uricase) {Arthrobacter globiformis [TaxId: 1665]}
Probab=21.23 E-value=17 Score=25.75 Aligned_cols=23 Identities=13% Similarity=0.390 Sum_probs=15.3
Q ss_pred ccchhhcCCCCCCcchhcccCCCC-Cccccccc
Q psy8928 84 GWDRYLSSNKTNNTNMERNRKFKE-AERLFSLS 115 (134)
Q Consensus 84 GfDgylk~~~~~~~~~~r~~~~~d-~DRiFSlS 115 (134)
||.||++-.-. .++| .|||||-+
T Consensus 21 ~F~GF~rDeyT---------TLpet~DRilaT~ 44 (156)
T d2yzca2 21 EFHGFPRDKYT---------TLQETTDRILATD 44 (156)
T ss_dssp CBCCCCCCTTC---------CCCCBSCCCEEEE
T ss_pred cccccccCccc---------cCCCcccceEEEE
Confidence 89999876422 2333 79999753
No 11
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.77 E-value=53 Score=20.78 Aligned_cols=29 Identities=21% Similarity=0.152 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 9 PAMNVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 9 ~y~~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
++..++.+|+..| +.++.+|.-||+.|-.
T Consensus 39 e~~~~~~eL~~~l---~siewdL~dLe~av~~ 67 (106)
T d1lvfa_ 39 EIDWTTNELRNNL---RSIEWDLEDLDETISI 67 (106)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHhHHHHHHHHHHH
Confidence 3344444444444 2345555555555543
No 12
>d2ibaa2 d.96.1.4 (A:137-295) Urate oxidase (uricase) {Aspergillus flavus [TaxId: 5059]}
Probab=20.66 E-value=18 Score=25.60 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=15.6
Q ss_pred ccchhhcCCCCCCcchhcccCCCC-Cccccccc
Q psy8928 84 GWDRYLSSNKTNNTNMERNRKFKE-AERLFSLS 115 (134)
Q Consensus 84 GfDgylk~~~~~~~~~~r~~~~~d-~DRiFSlS 115 (134)
||.||++-.-. .++| .|||||-+
T Consensus 22 ~F~GF~rDeYT---------TLpet~DRilaT~ 45 (159)
T d2ibaa2 22 QFWGFLRDEYT---------TLKETWDRILSTD 45 (159)
T ss_dssp CBCSCCCSTTC---------CCCCBSSCCEEEE
T ss_pred cccccccCccc---------cCCCcccceEEEE
Confidence 89999876422 2333 79999854
No 13
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.61 E-value=82 Score=18.61 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8928 12 NVRSELADLVKKKAEIAETLASLERQIYA 40 (134)
Q Consensus 12 ~lk~eL~~ll~kk~~le~~l~~LE~qIy~ 40 (134)
.|+.++..+......|..+.+.|+++|-.
T Consensus 51 ~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 79 (83)
T d1nkpb_ 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666644
Done!