RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8928
(134 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 7e-04
Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 44/140 (31%)
Query: 17 LADLVKKKAEIAETLASLERQIYAFEGSYLEDTQLYGNETLASLERQIYAFEGSYLEDTQ 76
++ LV+ +++ + L + FE YLE GN+ I+A L++
Sbjct: 68 VSSLVEP-SKVGQFDQVLNLCLTEFENCYLE-----GND--------IHALAAKLLQEND 113
Query: 77 L----YGNVIRGWDRYLSSNKTNNTNMERNRK---FKEAE----RLFS------------ 113
+I+ Y+++ ++ F+ +L +
Sbjct: 114 TTLVKTKELIKN---YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 114 --LSSI--TSSAAVSGLIES 129
L + T V LI+
Sbjct: 171 EELRDLYQTYHVLVGDLIKF 190
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein;
unknown function; 2.60A {Mycobacterium tuberculosis}
Length = 351
Score = 30.5 bits (68), Expect = 0.13
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 10 AMNVRSELADLVKKKAEIAETLASLERQIYAFEGSYLEDTQLYGNETLASLERQIYAFEG 69
A V++++ + V+ AE+A+ +A+LERQ AF + + L +E L S + FE
Sbjct: 278 AAEVQAKIDEQVQASAEVAQVVAALERQYDAFIDAQENRSLLTRDEDLPSGDELGAEFE- 336
Query: 70 SYLED 74
+L
Sbjct: 337 RFLAQ 341
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 28.5 bits (64), Expect = 0.66
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 11 MNVRSELADLVKKKAEIAETLASLERQIYAFEGSYLEDTQLYGNE 55
M +R E +L K A I E L + E ED + +G+E
Sbjct: 699 MEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDE 743
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 28.7 bits (65), Expect = 0.68
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 11 MNVRSELADLVKKKAEIAETLASLERQIYAFEGSYLEDTQLYGNE 55
M +R E ++L K++ ++ LAS + + D Q YG++
Sbjct: 405 MKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 449
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein
structure initiativ midwest center for structural
genomics; 2.97A {Streptomyces avermitilis}
Length = 250
Score = 27.4 bits (60), Expect = 1.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 10 AMNVRSELADLVKKKAEIAETLASLERQ 37
A + + L + +E+AE + SLE
Sbjct: 219 ARAWQVGVDQLAAEDSEVAEYVQSLEEA 246
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.5
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 2 SSKGGGAPAMNVRSELADLVKKKAEIAETLASLERQIYAFEGSYLE--DTQLYGNETLAS 59
++ +N L L K I + ER + A +L + L ++
Sbjct: 512 TAWNASGSILNT---LQQLKFYKPYICDNDPKYERLVNAIL-DFLPKIEENLICSKYTDL 567
Query: 60 LERQIYAFEGSYLEDT 75
L + A + + E+
Sbjct: 568 LRIALMAEDEAIFEEA 583
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 27.1 bits (60), Expect = 1.8
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 19/78 (24%)
Query: 11 MNVRSELADLVKK-KAEIAETLASLERQ--------IYAFE-----GSYLEDTQLY---- 52
N+ + L + +I L+ + AF+ ++ ++ Y
Sbjct: 13 YNINDRVLKLYETAMNDIQNQFKILDDIREFNQLKVLNAFQEERISEAHFTNSSGYGYGD 72
Query: 53 -GNETLASLERQIYAFEG 69
G ++L ++ +++ E
Sbjct: 73 IGRDSLDAVYARVFNTES 90
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG
structure initiative; 2.35A {Corynebacterium glutamicum
atcc 13032} SCOP: c.56.8.1
Length = 319
Score = 27.1 bits (59), Expect = 1.8
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 10 AMNVRSELADLVKKKAEIAETLASLERQIYAFEGSYLEDTQ---LYGNETLASLERQIYA 66
A V +L + ++ +EI + +LE+Q + Y + G L S +
Sbjct: 238 AEKVHRQLMEQTEESSEIQRVVGALEQQYDSELERYRNRHPQAVMPGESELPSGDEIGAE 297
Query: 67 FEGSYLED 74
FE +L D
Sbjct: 298 FE-KFLAD 304
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure,
actinobacteria-specific protein, conserved protein,
unknown function; 2.20A {Streptomyces coelicolor}
Length = 325
Score = 27.0 bits (59), Expect = 2.0
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 10 AMNVRSELADLVKKK-AEIAETLASLERQIYAFEGSYLEDTQLYGNETLASLERQIYAFE 68
A ++E+ +++ E+ + LE Q A G+ L + S + FE
Sbjct: 243 AHRTQTEIDRQIQEGDEELIALVQGLEHQYDAAAGAETRGNMLAEPVEIPSADEIGREFE 302
Query: 69 GSYLED 74
+L +
Sbjct: 303 -RFLAE 307
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 26.7 bits (59), Expect = 2.5
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 13 VRSELADLVKKKAEIAETLASLERQIYAFE-----GSYLEDTQLY-----GNETLASLER 62
V +++ DL K EIAE + + + AF+ + + Y G +TL +
Sbjct: 12 VETQIDDLQNKTDEIAE--FNQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYA 69
Query: 63 QIYAFEG 69
++ E
Sbjct: 70 TVFKTEA 76
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 26.6 bits (59), Expect = 2.6
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 12 NVRSELADLVKKKAEIAETLASLERQIYAFE-----GSYLEDTQLY-----GNETLASLE 61
V S++ ++ K+ E+ E+ + R + +F S+ T Y G +TL +
Sbjct: 17 EVESQITEVHKRADEVIES--NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVY 74
Query: 62 RQIYAFEG 69
++ E
Sbjct: 75 ADVFGAEA 82
>3gp6_A Protein PAGP, protein CRCA; palmitoyltransferase, beta-barrel,
outer membrane enzyme, PA MPD, transferase; HET: SDS;
1.40A {Escherichia coli} PDB: 1mm4_A 1mm5_A 1thq_A*
Length = 163
Score = 25.7 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 57 LASLERQIYAFEGSYLEDTQLYGNVIRGWDRY 88
LAS+ F+ +Y+ T GNV W R+
Sbjct: 129 LASVGYGPVTFQMTYIPGTYNNGNVYFAWMRF 160
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 25.9 bits (57), Expect = 4.6
Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 19/78 (24%)
Query: 11 MNVRSELADLVKK-KAEIAETLASLERQ--------IYAFEGS-----YLEDTQLY---- 52
N+ + +L ++ ++ + + + AF+ + ++ Y
Sbjct: 14 YNINERVLELYERALNDVEKEFKYYDEIREYNQLKVLKAFQEERISESHFTNSSGYGYND 73
Query: 53 -GNETLASLERQIYAFEG 69
G ++L + I+ E
Sbjct: 74 IGRDSLDRVYANIFNTES 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 26.0 bits (57), Expect = 6.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 16 ELADLVKKKAEIAETLASLERQI----YAFEGSYLEDTQLYGNETLASL 60
+ DL+K E L +LE+++ +G+ LE+ +L TL +L
Sbjct: 2147 KREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELM--VTLNNL 2193
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 25.6 bits (56), Expect = 6.8
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 16 ELADLVKKKAEIAETLASLERQI----YAFEGSYLEDTQLYGNETLASL 60
+ +DL+K + E L LE+ + G+ L+D + TL +L
Sbjct: 2327 KRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVI--STLETL 2373
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.126 0.340
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,846,634
Number of extensions: 96545
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 21
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.0 bits)