RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8928
         (134 letters)



>d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 28.2 bits (63), Expect = 0.12
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 21 VKKKAEIAETLASLERQIYAFEGSYLEDTQLYGNETLASL 60
          +KK   + E +  LE+++  F G   +       E L   
Sbjct: 5  IKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKE 44


>d1thqa_ f.4.1.2 (A:) Outer membrane enzyme PagP {Escherichia coli
           [TaxId: 562]}
          Length = 157

 Score = 26.3 bits (58), Expect = 1.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 57  LASLERQIYAFEGSYLEDTQLYGNVIRGWDRY 88
           LAS+      F+ +Y+  T   GNV   W R+
Sbjct: 122 LASVGYGPVTFQMTYIPGTYNNGNVYFAWMRF 153


>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 111

 Score = 25.6 bits (56), Expect = 1.4
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 21 VKKKAEIAETLASLERQIYAFEGSYLEDTQLYGNETLASL 60
          V K   I E +  LE+ + +FEG   +   L   E L   
Sbjct: 29 VLKVEAILEKVQGLEQAVDSFEGKKTDKKYLMIEEYLTKE 68


>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5,
          BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 99

 Score = 25.1 bits (55), Expect = 1.8
 Identities = 7/40 (17%), Positives = 14/40 (35%)

Query: 21 VKKKAEIAETLASLERQIYAFEGSYLEDTQLYGNETLASL 60
          + +  EI   + ++E Q+  F G   +         L   
Sbjct: 17 ISRLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQ 56


>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923
           {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 269

 Score = 24.2 bits (52), Expect = 5.6
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 10  AMNVRSELADLVKKKAEIAETLASLERQIYAF 41
           A  V  +L +  ++ +EI   + +LE+Q  + 
Sbjct: 233 AEKVHRQLMEQTEESSEIQRVVGALEQQYDSE 264


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.126    0.340 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 426,255
Number of extensions: 16940
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 6
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (22.7 bits)