BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8929
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVV--ALNNVTSLSEVPVARNFGFQITTW 116
+ W + WFVL G L YY+D + E VL V+ + N P R F F
Sbjct: 25 LRLWKRRWFVLSGHCLFYYKD--SREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHP 82
Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
+ +L+A T W+ A+ R A+ + DD P S
Sbjct: 83 GMRTYVLAADTLEDLRGWLRALGR-ASRAEGDDYGQPRS 120
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 8 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVV--ALNNVTSLSEVPVARNFGF 57
W + WFVL G L YY+D + E VL V+ + N P R F F
Sbjct: 28 WKRRWFVLSGHCLFYYKD--SREESVLGSVLLPSYNIRPDGPGAPRGRRFTF 77
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSL--SEVPVARNFGFQITTW 116
+ W K WFVL L YYRD K E G+L ++ + +L SE + R + F+
Sbjct: 35 MKLWKKRWFVLSDLCLFYYRDEK--EEGILGSILLPSFQIALLTSEDHINRKYAFKAAHP 92
Query: 117 DSKRTILSAVTAGIRNNWMSAI 138
+ + T WM A+
Sbjct: 93 NMRTYYFCTDTGKEMELWMKAM 114
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 8 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSL--SEVPVARNFGFQ 58
W K WFVL L YYRD K E G+L ++ + +L SE + R + F+
Sbjct: 38 WKKRWFVLSDLCLFYYRDEK--EEGILGSILLPSFQIALLTSEDHINRKYAFK 88
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV----ARNFGFQI- 113
+ W + +FVLR L YY+D EE G + L T + E+ A F F+I
Sbjct: 21 VKNWQQRYFVLRAQQLYYYKD---EEDTKPQGCMYLPGCT-IKEIATNPEEAGKFVFEII 76
Query: 114 -TTWDSKRT-----ILSAVTAGIRNNWMSAIKRTAA 143
+WD R +L A + W+ ++R A
Sbjct: 77 PASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG 112
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKH 65
++W + W VL+ + L++R +++ + G L+N S RN W K
Sbjct: 35 NSWKRRWCVLKDETFLWFR---SKQEALKQG--WLHNNGGGSSTLSRRN-------WKKR 82
Query: 66 WFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTI-LS 124
WFVLR L+Y+ + E+ L G V + + + + N G I D RT L
Sbjct: 83 WFVLRQSKLMYFENDSEEK---LKGTVEVRSAKEIIDNTNKEN-GIDIIMAD--RTFHLI 136
Query: 125 AVTAGIRNNWMSAIKRTAAMS------LLDDKASPSSS 156
A + + W S + + + + + D++A+P ++
Sbjct: 137 AESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQNA 174
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSL 46
+ W K WFVLR L+Y+ + E+ L G V + + +
Sbjct: 76 RRNWKKRWFVLRQSKLMYFENDSEEK---LKGTVEVRSAKEI 114
>pdb|2Y7B|A Chain A, Crystal Structure Of The Ph Domain Of Human Actin-Binding
Protein Anillin Anln
Length = 134
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Query: 62 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW----- 116
W + W VL G + Y+ P E+ G + L N TS P R F + T+
Sbjct: 23 WHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFELITV 82
Query: 117 -----DSKRTILSAV--TAGIRNNWMSA 137
D + T++S T + NW+SA
Sbjct: 83 RPQREDDRETLVSQCRDTLCVTKNWLSA 110
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 8 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNF 55
W + W VL G + Y+ P E+ G + L N TS P R F
Sbjct: 23 WHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREF 70
>pdb|1X1G|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin 2
Length = 129
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 56 GFQITTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNNVTSLSE---VP------V 105
G + W FVLR + L+Y DP EE+ + G ++ S E VP V
Sbjct: 28 GHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNV 87
Query: 106 ARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKR 140
N F++ T D + A + R W+ AIK+
Sbjct: 88 QGNL-FKVITKDDTHYYIQASSKAERAEWIEAIKK 121
>pdb|2Q13|A Chain A, Crystal Structure Of Bar-Ph Domain Of Appl1
Length = 385
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 52 ARN-FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALN--NVTSLSEVPVARN 108
ARN G +TW + ++ +G +L+ ++ G + G +A++ N + ++ R
Sbjct: 286 ARNKTGLVSSTWDRQFYFTQGGNLM------SQARGDVAGGLAMDIDNCSVMAVDCEDRR 339
Query: 109 FGFQITTWDSKR-TILSAVTAGIRNNWMSAI 138
+ FQIT++D K+ +IL A + W+ I
Sbjct: 340 YCFQITSFDGKKSSILQAESKKDHEEWICTI 370
>pdb|1X05|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin
Length = 129
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 56 GFQITTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVARNFG-- 110
G + W F+LR + L+Y DP E + G + L VTS+ R
Sbjct: 28 GHRRKNWKVRKFILREDPAYLHYYDPAGAEDPL--GAIHLRGCVVTSVESNSNGRKSEEE 85
Query: 111 --FQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
F+I T D L A T R W+ AI+ M+ K+ PSS
Sbjct: 86 NLFEIITADEVHYFLQAATPKERTEWIKAIQ----MASRTGKSGPSS 128
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS 118
+ W K WFVL L YY+D K E +L + L+ R Q + S
Sbjct: 36 VKQWNKRWFVLVDRCLFYYKDEK--EESILGSIPLLS----------FRVAAVQPSDNIS 83
Query: 119 KRTILSAVTAGIRNNWMSA 137
++ A AG+R + SA
Sbjct: 84 RKHTFKAEHAGVRTYFFSA 102
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 8 WTKHWFVLRGCSLLYYRDPKAE 29
W K WFVL L YY+D K E
Sbjct: 39 WNKRWFVLVDRCLFYYKDEKEE 60
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP---VARNFGFQITT 115
+ W K WFVL L YY+D K E + G + L + + P ++R F+
Sbjct: 25 VKQWNKRWFVLVDRCLFYYKDEKEES---ILGSIPLLSFRVAAVQPSDNISRKHTFKAEH 81
Query: 116 WDSKRTILSAVTAGIRNNWMSAIKRTA 142
+ SA + + W+ A+ A
Sbjct: 82 AGVRTYFFSAESPEEQEAWIQAMGEAA 108
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 8 WTKHWFVLRGCSLLYYRDPKAE 29
W K WFVL L YY+D K E
Sbjct: 28 WNKRWFVLVDRCLFYYKDEKEE 49
>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin
Length = 127
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 56 GFQITTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVARNFG-- 110
G + W F+LR + L+Y DP E + G + L VTS+ R
Sbjct: 32 GHRRKNWKVRKFILREDPAYLHYYDPAGAEDPL--GAIHLRGCVVTSVESNSNGRKSEEE 89
Query: 111 --FQITTWDSKRTILSAVTAGIRNNWMSAIK 139
F+I T D L A T R W+ AI+
Sbjct: 90 NLFEIITADEVHYFLQAATPKERTEWIKAIQ 120
>pdb|1ZM0|A Chain A, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
pdb|1ZM0|B Chain B, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
Length = 114
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 56 GFQITTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVARNFG-- 110
G + W F+LR + L+Y DP E + G + L VTS+ R
Sbjct: 19 GHRRKNWKVRKFILREDPAYLHYYDPAGAEDPL--GAIHLRGCVVTSVESNSNGRKSEEE 76
Query: 111 --FQITTWDSKRTILSAVTAGIRNNWMSAIK 139
F+I T D L A T R W+ AI+
Sbjct: 77 NLFEIITADEVHYFLQAATPKERTEWIKAIQ 107
>pdb|2I5C|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|B Chain B, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|C Chain C, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5F|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,5,6)p5
Length = 109
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 56 GFQITTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVARNFG-- 110
G + W F+LR + L+Y DP E + G + L VTS+ R
Sbjct: 17 GHRRKNWKVRKFILREDPAYLHYYDPAGAEDPL--GAIHLRGCVVTSVESNSNGRKSEEE 74
Query: 111 --FQITTWDSKRTILSAVTAGIRNNWMSAIK 139
F+I T D L A T R W+ AI+
Sbjct: 75 NLFEIITADEVHYFLQAATPKERTEWIKAIQ 105
>pdb|2DTC|A Chain A, Crystal Structure Of Ms0666
pdb|2DTC|B Chain B, Crystal Structure Of Ms0666
Length = 126
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 59 ITTWTKHWFVLRGCSLLYY 77
+++WT++W VL G +LLYY
Sbjct: 21 LSSWTRYWVVLSGATLLYY 39
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 7 TWTKHWFVLRGCSLLYY 23
+WT++W VL G +LLYY
Sbjct: 23 SWTRYWVVLSGATLLYY 39
>pdb|2ELB|A Chain A, Crystal Structure Of The Bar-Ph Domain Of Human Appl1
Length = 396
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 52 ARN-FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVA--LNNVTSLSEVPVARN 108
ARN G +TW + ++ +G +L ++ G + G +A ++N + + R
Sbjct: 306 ARNKTGLVSSTWDRQFYFTQGGNL------XSQARGDVAGGLAXDIDNCSVXAVDCEDRR 359
Query: 109 FGFQITTWDSKR-TILSAVTAGIRNNWMSAI 138
+ FQIT++D K+ +IL A + W+ I
Sbjct: 360 YCFQITSFDGKKSSILQAESKKDHEEWICTI 390
>pdb|2Z0O|A Chain A, Crystal Structure Of Appl1-Bar-Ph Domain
Length = 387
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 52 ARN-FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVA--LNNVTSLSEVPVARN 108
ARN G +TW + ++ +G +L ++ G + G +A ++N + + R
Sbjct: 288 ARNKTGLVSSTWDRQFYFTQGGNL------XSQARGDVAGGLAXDIDNCSVXAVDCEDRR 341
Query: 109 FGFQITTWDSKR-TILSAVTAGIRNNWMSAI 138
+ FQIT++D K+ +IL A + W+ I
Sbjct: 342 YCFQITSFDGKKSSILQAESKKDHEEWICTI 372
>pdb|1PMS|A Chain A, Pleckstrin Homology Domain Of Son Of Sevenless 1 (Sos1)
With Glycine-Serine Added To The N-Terminus, Nmr, 20
Structures
Length = 136
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 92 VALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAI 138
V +N+ SE A F+I D I SA +A +NNWM+A+
Sbjct: 87 VQINDKDDTSEYKHA----FEIILKDGNSVIFSAKSAEEKNNWMAAL 129
>pdb|3A8P|A Chain A, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|B Chain B, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|C Chain C, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|D Chain D, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8Q|A Chain A, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|B Chain B, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|C Chain C, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|D Chain D, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
Length = 263
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 62 WTKHWFVLRGCSLLYY----RDPKAEESGVLDGVVALNN-VTSLSEVPVARNFGFQITTW 116
W ++W L+GC+LL+Y ++ + S + A ++ V S+ E P + F ++
Sbjct: 39 WKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHP-KKEHVFCLSNS 97
Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDK 150
+ A + NW++AI +A SL K
Sbjct: 98 CGDVYLFQATSQTDLENWVTAI-HSACASLFAKK 130
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 5 KHTWTKHWFVLRGCSLLYY 23
+ W ++W L+GC+LL+Y
Sbjct: 36 RRKWKQYWVTLKGCTLLFY 54
>pdb|3PP2|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of
Arhgap27
pdb|3PP2|B Chain B, Crystal Structure Of The Pleckstrin Homology Domain Of
Arhgap27
Length = 124
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 2 LNKKHTWTKHWFVLRGCSLLYYRDPKAEESGVL 34
L KKH W+ W VL G L +++D K +G L
Sbjct: 26 LRKKH-WSASWTVLEGGVLTFFKDSKTSAAGGL 57
>pdb|1WJM|A Chain A, Solution Structure Of Pleckstrin Homology Domain Of Human
Beta Iii Spectrin
Length = 123
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGV-LDGVVALNNVTSLSEVPV---ARNFGFQITTW 116
+W + VLR SL +Y+D KA +GV G V ++ + V R F++
Sbjct: 31 SWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQ 90
Query: 117 DSKRTILSAVTAGIRNNWMSAI 138
D K + A ++W+ +
Sbjct: 91 DGKEYLFQAKDEAEMSSWLRVV 112
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 7 TWTKHWFVLRGCSLLYYRDPKAEESGV 33
+W + VLR SL +Y+D KA +GV
Sbjct: 31 SWQNVYCVLRRGSLGFYKDAKAASAGV 57
>pdb|1AWE|A Chain A, Human Sos1 Pleckstrin Homology (Ph) Domain, Nmr, 20
Structures
Length = 130
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 92 VALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAI 138
V +N+ +E A F+I D I SA +A +NNWM+A+
Sbjct: 78 VQINDKDDTNEYKHA----FEIILKDENSVIFSAKSAEEKNNWMAAL 120
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 28.9 bits (63), Expect = 1.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 110 GFQITTWDSKRTILSAVTAGIRNNWMSAI 138
F+I D I SA +A +NNWM+A+
Sbjct: 316 AFEIILKDENSVIFSAKSAEEKNNWMAAL 344
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 28.9 bits (63), Expect = 1.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 110 GFQITTWDSKRTILSAVTAGIRNNWMSAI 138
F+I D I SA +A +NNWM+A+
Sbjct: 316 AFEIILKDENSVIFSAKSAEEKNNWMAAL 344
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 28.9 bits (63), Expect = 1.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 110 GFQITTWDSKRTILSAVTAGIRNNWMSAI 138
F+I D I SA +A +NNWM+A+
Sbjct: 513 AFEIILKDENSVIFSAKSAEEKNNWMAAL 541
>pdb|3UAH|A Chain A, Structure Of The Shq1 Specific Domain From Saccharomyces
Cerevisiae
pdb|3UAI|D Chain D, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 366
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/170 (18%), Positives = 63/170 (37%), Gaps = 38/170 (22%)
Query: 6 HTWTKHWFVLRGCSLLYYRDPKAEESGVL-DGVVALNNVTSLSEV--------------- 49
HT W + + C + + D + ++ L DG+ ++ V S +
Sbjct: 179 HTTESAWTMGKLCPQISFLDQQLKQVNELQDGMKEISKVNKDSSLIKIAIITGIRRALSY 238
Query: 50 PVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNF 109
P+ RN+ + WT +++LRG L R +LD + F
Sbjct: 239 PLHRNYDLAMKAWTFVYYILRGGKRLVIR-------ALLD---------------IHETF 276
Query: 110 GFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQ 159
F + + +L +TA + + R+ A+ + ++ S S ++
Sbjct: 277 RFHDVYYVYDKVLLDDLTAWFISQGSENVIRSLALEMRKEQESLSKQDIE 326
>pdb|3ZV0|A Chain A, Structure Of The Shq1p-Cbf5p Complex
pdb|3ZV0|B Chain B, Structure Of The Shq1p-Cbf5p Complex
Length = 369
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/170 (18%), Positives = 63/170 (37%), Gaps = 38/170 (22%)
Query: 6 HTWTKHWFVLRGCSLLYYRDPKAEESGVL-DGVVALNNVTSLSEV--------------- 49
HT W + + C + + D + ++ L DG+ ++ V S +
Sbjct: 176 HTTESAWTMGKLCPQISFLDQQLKQVNELQDGMKEISKVNKDSSLIKIAIITGIRRALSY 235
Query: 50 PVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNF 109
P+ RN+ + WT +++LRG L R +LD + F
Sbjct: 236 PLHRNYDLAMKAWTFVYYILRGGKRLVIR-------ALLD---------------IHETF 273
Query: 110 GFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQ 159
F + + +L +TA + + R+ A+ + ++ S S ++
Sbjct: 274 RFHDVYYVYDKVLLDDLTAWFISQGSENVIRSLALEMRKEQESLSKQDIE 323
>pdb|3ZUZ|A Chain A, Structure Of Shq1p C-Terminal Domain
Length = 365
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/170 (18%), Positives = 63/170 (37%), Gaps = 38/170 (22%)
Query: 6 HTWTKHWFVLRGCSLLYYRDPKAEESGVL-DGVVALNNVTSLSEV--------------- 49
HT W + + C + + D + ++ L DG+ ++ V S +
Sbjct: 178 HTTESAWTMGKLCPQISFLDQQLKQVNELQDGMKEISKVNKDSSLIKIAIITGIRRALSY 237
Query: 50 PVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNF 109
P+ RN+ + WT +++LRG L R +LD + F
Sbjct: 238 PLHRNYDLAMKAWTFVYYILRGGKRLVIR-------ALLD---------------IHETF 275
Query: 110 GFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQ 159
F + + +L +TA + + R+ A+ + ++ S S ++
Sbjct: 276 RFHDVYYVYDKVLLDDLTAWFISQGSENVIRSLALEMRKEQESLSKQDIE 325
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 55 FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVAR 107
G ++ TW + WF+L L Y+ +E G++ L N+ S+ EV R
Sbjct: 12 LGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENL-SIREVEDPR 60
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 55 FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVAR 107
G ++ TW + WF+L L Y+ +E G++ L N+ S+ EV R
Sbjct: 222 LGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENL-SIREVEDPR 270
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFG-FQIT 114
G ++ TW + WF+L L Y+ +E G++ L N+ S+ EV R F++
Sbjct: 22 GGRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENL-SIREVDDPRKPNCFELY 77
Query: 115 TWDSKRTILSAV 126
++K ++ A
Sbjct: 78 IPNNKGQLIKAC 89
>pdb|2RSG|A Chain A, Solution Structure Of The Cert Ph Domain
Length = 94
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS 118
I W W VL+ +L YY+ E G + V + + R F I+ DS
Sbjct: 14 IHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDECR---FDISVNDS 70
Query: 119 KRTILSAVTAGIRNNWMSAIKR 140
L A R W+ AI++
Sbjct: 71 V-WYLRAQDPDHRQQWIDAIEQ 91
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 55 FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVAR 107
G ++ TW + WF+L L Y+ +E G++ L N+ S+ EV R
Sbjct: 222 LGGRVKTWKRRWFILTDNCLYYFEYTTDKEPR---GIIPLENL-SIREVEDPR 270
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 55 FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVAR 107
G ++ TW + WF+L L Y+ +E G++ L N+ S+ EV R
Sbjct: 12 LGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENL-SIREVEDPR 60
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVAR 107
G ++ TW + WF+L L Y+ +E G++ L N+ S+ EV R
Sbjct: 26 GGRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENL-SIREVEDPR 73
>pdb|3A8N|A Chain A, Crystal Structure Of The Tiam1 Phccex Domain
Length = 279
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 62 WTKHWFVLRGCSLLYYR-DPKA--EESGVLDGVVALNN--VTSLSEVPVARNFGFQITTW 116
W +W L+GC+L +Y D ++ + + V V + N V ++ E P ++F F ++
Sbjct: 39 WKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHP-KKDFVFCLSNS 97
Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTAAMSL 146
+ + NW++AI A ++
Sbjct: 98 LGDAFLFQTTSQTELENWITAIHSACAAAV 127
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 5 KHTWTKHWFVLRGCSLLYY 23
+ W +W L+GC+L +Y
Sbjct: 36 RRKWKHYWVSLKGCTLFFY 54
>pdb|2P0D|A Chain A, Arhgap9 Ph Domain In Complex With Ins(1,4,5)p3
pdb|2P0F|A Chain A, Arhgap9 Ph Domain In Complex With Ins(1,3,5)p3
pdb|2P0H|A Chain A, Arhgap9 Ph Domain In Complex With Ins(1,3,4)p3
Length = 129
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 5 KHTWTKHWFVLRGCSLLYYRDP 26
+ W W VL G SL++YR+P
Sbjct: 31 RKNWGPSWVVLTGNSLVFYREP 52
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 62 WTKHWFVLRGCSLLYYRDP 80
W W VL G SL++YR+P
Sbjct: 34 WGPSWVVLTGNSLVFYREP 52
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 55 FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEV 103
G ++ TW + WF+L L Y+ +E G++ L N+ S+ EV
Sbjct: 14 LGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENL-SIREV 58
>pdb|2COD|A Chain A, Solution Structure Of The N-Terminal Ph Domain Of Arap2
Protein From Human
Length = 115
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTK 64
K + K W G S+ YY + K S G++ L +++S V V + F++ T T+
Sbjct: 22 KRMFQKRWVKFDGLSISYYNNEKEMYS---KGIIPL---SAISTVRVQGDNKFEVVT-TQ 74
Query: 65 HWFVLR 70
FV R
Sbjct: 75 RTFVFR 80
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP--VARNFGFQI 113
G + WT+ WFVL+ + YY +E+ G + L+ + +P + F +
Sbjct: 18 GHRRKNWTERWFVLKPNIISYYV---SEDLKDKKGDILLDENCCVESLPDKDGKKCLFLV 74
Query: 114 TTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
+D K +SA + W+ AI T + L + PSS
Sbjct: 75 KCFD-KTFEISASDKKKKQEWIQAIHSTIHLLKLGS-SGPSS 114
>pdb|1V88|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Oxysterol-Binding Protein-Related Protein 8 (Kiaa1451
Protein)
Length = 130
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQI 113
+ +WTK W VL+ LL Y K +++G G V LN + F F++
Sbjct: 20 LKSWTKLWCVLKPGVLLIY---KTQKNGQWVGTVLLNACEIIERPSKKDGFCFKL 71
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQI 59
+WTK W VL+ LL Y K +++G G V LN + F F++
Sbjct: 21 KSWTKLWCVLKPGVLLIY---KTQKNGQWVGTVLLNACEIIERPSKKDGFCFKL 71
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 18/54 (33%)
Query: 19 SLLYYRDPK-------AEESGV-----------LDGVVALNNVTSLSEVPVARN 54
LLY ++PK EE+G+ DGV+ L +VTS EV V R
Sbjct: 397 ELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRRE 450
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 18/54 (33%)
Query: 73 SLLYYRDPK-------AEESGV-----------LDGVVALNNVTSLSEVPVARN 108
LLY ++PK EE+G+ DGV+ L +VTS EV V R
Sbjct: 397 ELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRRE 450
>pdb|2KCJ|A Chain A, Solution Structure Of Fapp1 Ph Domain
Length = 108
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTW 116
+T W WFVL L YY D + + G + + ++ E+ V A N ++
Sbjct: 20 LTGWQPRWFVLDNGILSYY-DSQDDVCKGSKGSIKM----AVCEIKVHSADNTRMELIIP 74
Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDK 150
+ + AV A R W+ A+ + A SL D +
Sbjct: 75 GEQHFYMKAVNAAERQRWLVALGSSKA-SLTDTR 107
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 26.9 bits (58), Expect = 5.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 18/52 (34%)
Query: 20 LLYYRDPK-------AEESGV-----------LDGVVALNNVTSLSEVPVAR 53
LLY ++PK EE+G+ DGV+ L +VTS EV V R
Sbjct: 451 LLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRR 502
Score = 26.9 bits (58), Expect = 5.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 18/52 (34%)
Query: 74 LLYYRDPK-------AEESGV-----------LDGVVALNNVTSLSEVPVAR 107
LLY ++PK EE+G+ DGV+ L +VTS EV V R
Sbjct: 451 LLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRR 502
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,594,593
Number of Sequences: 62578
Number of extensions: 163982
Number of successful extensions: 374
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 76
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)