RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8929
(160 letters)
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 68.6 bits (168), Expect = 5e-16
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
+ K W G S+ YY + K G++ L+ + S V V + F++ T
Sbjct: 19 PQGKRMFQKRWVKFDGLSISYYNNEKEMY---SKGIIPLSAI---STVRVQGDNKFEVVT 72
Query: 116 WDSKRT-ILSAVTAGIRNNWMSAIKRTAAMSLL---DDKASPSSS 156
++RT + RN+W+S + L + PSS
Sbjct: 73 --TQRTFVFRVEKEEERNDWISILLNALKSQSLTSQSQASGPSSG 115
Score = 51.2 bits (123), Expect = 3e-09
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 61
K + K W G S+ YY + K G++ L+ + S V V + F++ T
Sbjct: 20 QGKRMFQKRWVKFDGLSISYYNNEKEMY---SKGIIPLSAI---STVRVQGDNKFEVVT 72
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 68.7 bits (168), Expect = 8e-16
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP---VARNFGFQ 112
+ W K WFVL L YYRD K E + G + L + + R + F+
Sbjct: 32 STGMKLWKKRWFVLSDLCLFYYRDEKEEG---ILGSILLPSFQIALLTSEDHINRKYAFK 88
Query: 113 ITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
+ + T WM A+ A + + PSS
Sbjct: 89 AAHPNMRTYYFCTDTGKEMELWMKAMLDAALV----QTSGPSS 127
Score = 52.1 bits (125), Expect = 1e-09
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 7 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP---VARNFGFQITTWT 63
W K WFVL L YYRD K E + G + L + + R + F+
Sbjct: 37 LWKKRWFVLSDLCLFYYRDEKEEG---ILGSILLPSFQIALLTSEDHINRKYAFKAAHPN 93
Query: 64 KHWFVLRGCS 73
+ +
Sbjct: 94 MRTYYFCTDT 103
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 67.8 bits (166), Expect = 1e-15
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA--RNFGFQI 113
G + WT+ WFVL+ + YY ++ G + L+ + +P + F +
Sbjct: 18 GHRRKNWTERWFVLKPNIISYYVSEDLKD---KKGDILLDENCCVESLPDKDGKKCLFLV 74
Query: 114 TTWDSKRT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSS 156
+T +SA + W+ AI + LL +S SS
Sbjct: 75 KC--FDKTFEISASDKKKKQEWIQAIHS--TIHLLKLGSSGPSS 114
Score = 51.2 bits (123), Expect = 2e-09
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 2 LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA--RNF 55
+ KK WT+ WFVL+ + YY ++ G + L+ + +P +
Sbjct: 14 MMKKGHRRKNWTERWFVLKPNIISYYVSEDLKD---KKGDILLDENCCVESLPDKDGKKC 70
Query: 56 GFQITT 61
F +
Sbjct: 71 LFLVKC 76
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 67.1 bits (164), Expect = 2e-15
Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 6/104 (5%)
Query: 54 NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFG 110
W + VL L Y D V + R
Sbjct: 12 TSYLGKEHWKTCFVVLSNGILYQYPDRTDVI---PLLSVNMGGEQCGGCRRANTTDRPHA 68
Query: 111 FQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPS 154
FQ+ D LSA + WM + + + ++ +PS
Sbjct: 69 FQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKGVIPQGVAPS 112
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 68.9 bits (168), Expect = 5e-15
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 25/138 (18%)
Query: 7 TWTKHWFVLRGCSLLYYRDP-KAEESGVLD--GVVALNNVTSLSEVPVARNFGFQITTWT 63
+W + W VL+ + L++R +A + G L G + W
Sbjct: 36 SWKRRWCVLKDETFLWFRSKQEALKQGWLHNNG---------------GGSSTLSRRNWK 80
Query: 64 KHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT-I 122
K WFVLR L+Y+ + E+ L G V + + + + + G I + RT
Sbjct: 81 KRWFVLRQSKLMYFENDSEEK---LKGTVEVRSAKEIIDNT-NKENGIDIIM--ADRTFH 134
Query: 123 LSAVTAGIRNNWMSAIKR 140
L A + + W S + +
Sbjct: 135 LIAESPEDASQWFSVLSQ 152
Score = 56.2 bits (135), Expect = 2e-10
Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 27/156 (17%)
Query: 7 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT----- 61
W K WFVLR L+Y+ + E+ L G V + + + + + G I
Sbjct: 78 NWKKRWFVLRQSKLMYFENDSEEK---LKGTVEVRSAKEIIDNT-NKENGIDIIMADRTF 133
Query: 62 ------------WTK--HWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEV-PVA 106
W + + G + + + S+
Sbjct: 134 HLIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQNAVGTLDVGLIDSVCASDSPD 193
Query: 107 RNFGFQITTWDSKRTI-LSAVTAGIRNNWMSAIKRT 141
R F I T + R + +A T ++W++ ++R+
Sbjct: 194 RPNSFVIIT--ANRVLHCNADTPEEMHHWITLLQRS 227
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 64.3 bits (157), Expect = 3e-14
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFGFQITTWDSK 119
TW WF L L Y++D + E ++ L +++ R F +
Sbjct: 33 TWKTRWFTLHRNELKYFKDQMSPE---PIRILDLTECSAVQFDYSQERVNCFCLVF--PF 87
Query: 120 RT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQ 159
RT L A T + W+ ++ +S + + + T++
Sbjct: 88 RTFYLCAKTGVEADEWIKILRW--KLSQIRKQLNQGEGTIR 126
Score = 49.7 bits (119), Expect = 1e-08
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 2 LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFG 56
L K+ TW WF L L Y++D + E ++ L +++ R
Sbjct: 24 LTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPE---PIRILDLTECSAVQFDYSQERVNC 80
Query: 57 FQITT 61
F +
Sbjct: 81 FCLVF 85
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 63.6 bits (155), Expect = 6e-14
Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP----VARNFGF 111
G + W + +F L ++ Y++ +E V+ L V + E + R+ F
Sbjct: 24 GAVMKNWKRRYFQLDENTIGYFKSELEKE---PLRVIPLKEVHKVQECKQSDIMMRDNLF 80
Query: 112 QITTWDSKRT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
+I T + RT + A + ++W+ A+ +++ S
Sbjct: 81 EIVT--TSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSASSE 123
Score = 49.8 bits (119), Expect = 9e-09
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 2 LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP----VAR 53
K+ W + +F L ++ Y++ +E V+ L V + E + R
Sbjct: 20 CVKQGAVMKNWKRRYFQLDENTIGYFKSELEKE---PLRVIPLKEVHKVQECKQSDIMMR 76
Query: 54 NFGFQITT 61
+ F+I T
Sbjct: 77 DNLFEIVT 84
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 62.9 bits (153), Expect = 7e-14
Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKR 120
W W +R L +Y+D + ++L + + + F+I +
Sbjct: 21 QWKSRWCSVRDNHLHFYQDRNRSKVAQ--QPLSLVGCEVVPDPSPDHLYSFRILHKGEEL 78
Query: 121 TILSAVTAGIRNNWMSAIKRTAA 143
L A ++ +W+ + +
Sbjct: 79 AKLEAKSSEEMGHWLGLLLSESG 101
Score = 55.6 bits (134), Expect = 4e-11
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 2 LNKK--HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQI 59
LN W W +R L +Y+D + ++L + + + F+I
Sbjct: 14 LNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQ--QPLSLVGCEVVPDPSPDHLYSFRI 71
Query: 60 TTWTKHWFVLRGCS 73
+ L S
Sbjct: 72 LHKGEELAKLEAKS 85
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 63.8 bits (155), Expect = 9e-14
Identities = 16/114 (14%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
Query: 53 RNFGFQITTWTKHWFVLRGCS-----LLYYRDPKAEESGVLDGVVALNNVTSLSEVPVAR 107
+ ++ + +F L L +Y+D K S G + L++ + + R
Sbjct: 31 SAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEK--ISKEPKGSIFLDSCMGVVQNNKVR 88
Query: 108 NFGFQITTWDSKRT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ 160
F F++ K + +L+A + W++ + + ++ + +
Sbjct: 89 RFAFELKM-QDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDSHE 141
Score = 47.7 bits (113), Expect = 9e-08
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 7 TWTKHWFVLRGCS-----LLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 61
++ + +F L L +Y+D K S G + L++ + + R F F++
Sbjct: 39 SFKRRFFHLIQLGDGSYNLNFYKDEK--ISKEPKGSIFLDSCMGVVQNNKVRRFAFELKM 96
Query: 62 WTKHWFVLRGCS 73
K ++L S
Sbjct: 97 QDKSSYLLAADS 108
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 62.1 bits (151), Expect = 2e-13
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT---SLSEVPVARNFGFQITTWD 117
W + WFVL G L YY+D + E + G V L + P R F F
Sbjct: 27 LWKRRWFVLSGHCLFYYKDSREES---VLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPG 83
Query: 118 SKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSST 157
+ +L+A T W+ A+ R A+ + DD P S
Sbjct: 84 MRTYVLAADTLEDLRGWLRALGR-ASRAEGDDYGQPRSPA 122
Score = 46.7 bits (111), Expect = 1e-07
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 7 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT---SLSEVPVARNFGFQITTWT 63
W + WFVL G L YY+D + E + G V L + P R F F
Sbjct: 27 LWKRRWFVLSGHCLFYYKDSREES---VLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPG 83
Query: 64 KHWFVL 69
+VL
Sbjct: 84 MRTYVL 89
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 60.8 bits (148), Expect = 5e-13
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP--VARNFGFQI 113
G TW W VL + +Y+ G++ L T S R F F+I
Sbjct: 15 GSVFNTWKPMWVVLLEDGIEFYKKKSDNS---PKGMIPLKGSTLTSPCQDFGKRMFVFKI 71
Query: 114 TTWDSKRTILSAVTAGIRNNWMSAIKR 140
TT + A R+ W+ I +
Sbjct: 72 TTTKQQDHFFQAAFLEERDAWVRDINK 98
Score = 52.7 bits (127), Expect = 7e-10
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 2 LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP--VARNF 55
L KK +TW W VL + +Y+ G++ L T S R F
Sbjct: 11 LVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNS---PKGMIPLKGSTLTSPCQDFGKRMF 67
Query: 56 GFQITTWTKHWFVLRGCS 73
F+ITT + +
Sbjct: 68 VFKITTTKQQDHFFQAAF 85
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 59.8 bits (145), Expect = 1e-12
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 54 NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA----RNF 109
+ F + W K W V+ YY + K+++ G + + + +
Sbjct: 15 DHSFFGSEWQKRWCVVSRGLFYYYANEKSKQ---PKGTFLIKGYSVRMAPHLRRDSKKES 71
Query: 110 GFQITTWDSKRT-ILSAVTAGIRNNWMSAIKR 140
F++T+ +RT +A + +W+ I
Sbjct: 72 CFELTS-QDRRTYEFTATSPAEARDWVDQISF 102
Score = 45.1 bits (107), Expect = 4e-07
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA----RNFGFQITT 61
W K W V+ YY + K+++ G + + + + F++T+
Sbjct: 21 SEWQKRWCVVSRGLFYYYANEKSKQ---PKGTFLIKGYSVRMAPHLRRDSKKESCFELTS 77
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 63.1 bits (152), Expect = 1e-12
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
G +TW + ++ +G +L+ +D ++N + ++ R + FQIT+
Sbjct: 291 GLVSSTWDRQFYFTQGGNLMSQARGDVAGGLAMD----IDNCSVMAVDCEDRRYCFQITS 346
Query: 116 WDSKRTI-LSAVTAGIRNNWMSAIKRTAAMSLLDDK 150
+D K++ L A + W+ I + L +
Sbjct: 347 FDGKKSSILQAESKKDHEEWICTINNISKQIYLSEN 382
Score = 42.7 bits (99), Expect = 2e-05
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTK 64
TW + ++ +G +L+ +D ++N + ++ R + FQIT++
Sbjct: 294 SSTWDRQFYFTQGGNLMSQARGDVAGGLAMD----IDNCSVMAVDCEDRRYCFQITSFDG 349
Query: 65 H 65
Sbjct: 350 K 350
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 60.7 bits (147), Expect = 1e-12
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA----RN 108
++ F W K W L YY K ++ G A++ + ++
Sbjct: 28 KDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---QKGEFAIDGYDVRMNNTLRKDGKKD 84
Query: 109 FGFQITTWDSKRT-ILSAVTAGIRNNWMSAIKR 140
F+I KR +A + W+ +K
Sbjct: 85 CCFEICA-PDKRIYQFTAASPKDAEEWVQQLKF 116
Score = 45.7 bits (108), Expect = 5e-07
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 7/69 (10%)
Query: 6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA----RNFGFQITT 61
W K W L YY K ++ G A++ + ++ F+I
Sbjct: 35 FEWQKRWCALSKTVFYYYGSDKDKQ---QKGEFAIDGYDVRMNNTLRKDGKKDCCFEICA 91
Query: 62 WTKHWFVLR 70
K +
Sbjct: 92 PDKRIYQFT 100
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 59.4 bits (143), Expect = 4e-12
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 6/93 (6%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFG--FQI 113
+ +W LRG +L +Y D K+ + + ++T L+E F +
Sbjct: 28 RSGYREYEHYWTELRGTTLFFYTDKKSII---YVDKLDIVDLTCLTEQNSTEKNCAKFTL 84
Query: 114 TTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSL 146
+ L W I +S+
Sbjct: 85 VLPK-EEVQLKTENTESGEEWRGFILTVTELSV 116
Score = 45.5 bits (107), Expect = 6e-07
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 2 LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFG- 56
L K + +W LRG +L +Y D K+ + + ++T L+E
Sbjct: 24 LLIKRSGYREYEHYWTELRGTTLFFYTDKKSII---YVDKLDIVDLTCLTEQNSTEKNCA 80
Query: 57 -FQITTWTKHWF 67
F + +
Sbjct: 81 KFTLVLPKEEVQ 92
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 58.2 bits (141), Expect = 7e-12
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQ 112
+ W + +FVLR L YY+D + + G + L T A F F+
Sbjct: 18 RSIVKNWQQRYFVLRAQQLYYYKDEEDTK---PQGCMYLPGCTIKEIATNPEEAGKFVFE 74
Query: 113 ITT------WDSKRT-ILSAVTAGIRNNWMSAIKRTAAMS 145
I + + +L A + W+ ++R A
Sbjct: 75 IIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSG 114
Score = 46.3 bits (110), Expect = 2e-07
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 2 LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARN 54
L K+ W + +FVLR L YY+D + + G + L T A
Sbjct: 14 LKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTK---PQGCMYLPGCTIKEIATNPEEAGK 70
Query: 55 FGFQITT 61
F F+I
Sbjct: 71 FVFEIIP 77
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 57.8 bits (140), Expect = 9e-12
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWD 117
W K WFVL L YY+D K E + G + L + + P +R F+
Sbjct: 27 QWNKRWFVLVDRCLFYYKDEKEES---ILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAG 83
Query: 118 SKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
+ SA + + W+ A+ A + ++ PSS
Sbjct: 84 VRTYFFSAESPEEQEAWIQAMGEAARV-----QSGPSS 116
Score = 46.6 bits (111), Expect = 1e-07
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQI 59
+ W K WFVL L YY+D K E + G + L + + P +R F+
Sbjct: 23 SGVKQWNKRWFVLVDRCLFYYKDEKEES---ILGSIPLLSFRVAAVQPSDNISRKHTFKA 79
Query: 60 TTWTKHWFVLR 70
+
Sbjct: 80 EHAGVRTYFFS 90
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 57.0 bits (138), Expect = 1e-11
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT-SLSEVPVARNFGFQITTWDSK 119
W WFV++ L Y + L T +L + + + FQ+
Sbjct: 23 PWKHLWFVIKNKVLYTYAASEDVA---ALESQPLLGFTVTLVKDENSESKVFQLLH-KGM 78
Query: 120 RT-ILSAVTAGIRNNWMSAIKRTAAMS 145
+ A A W+ A +
Sbjct: 79 VFYVFKADDAHSTQRWIDAFQEGTVSG 105
Score = 46.6 bits (111), Expect = 1e-07
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT-SLSEVPVARNFGFQITTW 62
K W WFV++ L Y + L T +L + + + FQ+
Sbjct: 20 SKKPWKHLWFVIKNKVLYTYAASEDVA---ALESQPLLGFTVTLVKDENSESKVFQLLHK 76
Query: 63 TKHWFVLR 70
++V +
Sbjct: 77 GMVFYVFK 84
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 57.4 bits (139), Expect = 1e-11
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWD 117
W K WFVL L YY+D K E + G + L + + P +R F+
Sbjct: 38 QWNKRWFVLVDRCLFYYKDEKEES---ILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAG 94
Query: 118 SKRTILSAVTAGIRNNWMSAIKRTAAM 144
+ SA + + W+ A+ A +
Sbjct: 95 VRTYFFSAESPEEQEAWIQAMGEAARV 121
Score = 45.9 bits (109), Expect = 3e-07
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQI 59
+ W K WFVL L YY+D K E + G + L + + P +R F+
Sbjct: 34 SGVKQWNKRWFVLVDRCLFYYKDEKEES---ILGSIPLLSFRVAAVQPSDNISRKHTFKA 90
Query: 60 TTWTKHWFVLR 70
+
Sbjct: 91 EHAGVRTYFFS 101
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 57.0 bits (138), Expect = 1e-11
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 61 TWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS 118
W WF C L Y R + + L++ + A F+I T
Sbjct: 25 GWKSRWFFYDERKCQLYYSRTAQDAN---PLDSIDLSSAVFDCKAD-AEEGIFEIKT--P 78
Query: 119 KRT-ILSAVTAGIRNNWMSAIKR 140
R L A T W+ ++
Sbjct: 79 SRVITLKAATKQAMLYWLQQLQM 101
Score = 44.3 bits (105), Expect = 1e-06
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 3 NKKHTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQIT 60
W WF C L Y R + + L++ + A F+I
Sbjct: 21 GPIRGWKSRWFFYDERKCQLYYSRTAQDAN---PLDSIDLSSAVFDCKAD-AEEGIFEIK 76
Query: 61 T 61
T
Sbjct: 77 T 77
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 57.0 bits (137), Expect = 2e-11
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 24/107 (22%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-----ARNFGFQI 113
W + W VL G + Y+ P E+ G + L N TS P AR F++
Sbjct: 20 FGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFEL 79
Query: 114 TTWDSKRT-------------------ILSAVTAGIRNNWMSAIKRT 141
T +R LSA T R+ WM + +
Sbjct: 80 ITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQV 126
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 58.2 bits (140), Expect = 3e-11
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT----SLSEVPVARNFGF 111
F W K W L YY K ++ G A++ + ++ F
Sbjct: 120 SFLGFEWQKRWCALSKTVFYYYGSDKDKQQ---KGEFAIDGYDVRMNNTLRKDGKKDCCF 176
Query: 112 QITTWDSKRT-ILSAVTAGIRNNWMSAIKR 140
+I KR +A + W+ +K
Sbjct: 177 EICA-PDKRIYQFTAASPKDAEEWVQQLKF 205
Score = 44.0 bits (103), Expect = 4e-06
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 7/69 (10%)
Query: 6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT----SLSEVPVARNFGFQITT 61
W K W L YY K ++ G A++ + ++ F+I
Sbjct: 124 FEWQKRWCALSKTVFYYYGSDKDKQQ---KGEFAIDGYDVRMNNTLRKDGKKDCCFEICA 180
Query: 62 WTKHWFVLR 70
K +
Sbjct: 181 PDKRIYQFT 189
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 55.2 bits (133), Expect = 7e-11
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 9/97 (9%)
Query: 60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSK 119
W + ++ L + L+ + V +E F + +
Sbjct: 25 KVWQRRKCSVKNGILTISHATSNRQPAKLN--LLTCQVKPNAE----DKKSFDLIS--HN 76
Query: 120 RT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
RT A W+S + + +L + PSS
Sbjct: 77 RTYHFQAEDEQDYVAWISVLTNSKEEALTMAFSGPSS 113
Score = 41.8 bits (98), Expect = 9e-06
Identities = 6/65 (9%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 62
+ W + ++ L + L+ + V +E F + +
Sbjct: 22 GIRKVWQRRKCSVKNGILTISHATSNRQPAKLN--LLTCQVKPNAE----DKKSFDLISH 75
Query: 63 TKHWF 67
+ +
Sbjct: 76 NRTYH 80
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 54.9 bits (132), Expect = 8e-11
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 56 GFQITTWTKHWFVLRG-CSLLYYRDPKAEE-SGVLDGVVALNNVTSLSEVP-------VA 106
+ W K+WF L L+YY D + + + N+ + E +
Sbjct: 15 STILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKS 74
Query: 107 RNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRT 141
++ QI D K L A + W ++ +
Sbjct: 75 KDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 54.7 bits (132), Expect = 1e-10
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 16/97 (16%)
Query: 56 GFQITTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA------- 106
G + W WFVL L YY E GV+ L V +++
Sbjct: 18 GAFMKPWKARWFVLDKTKHQLRYYDHRMDTE---CKGVIDLAEVEAVAPGTPTIGAPKTV 74
Query: 107 -RNFGFQITTWDSKRT-ILSAVTAGIRNNWMSAIKRT 141
F + T ++R A W+ I+
Sbjct: 75 DEKAFFDVKT--TRRVYNFCAQDVPSAQQWVDRIQSC 109
Score = 41.6 bits (98), Expect = 9e-06
Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 13/69 (18%)
Query: 3 NKKHTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-------- 52
W WFVL L YY E GV+ L V +++
Sbjct: 19 AFMKPWKARWFVLDKTKHQLRYYDHRMDTE---CKGVIDLAEVEAVAPGTPTIGAPKTVD 75
Query: 53 RNFGFQITT 61
F + T
Sbjct: 76 EKAFFDVKT 84
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 55.0 bits (132), Expect = 1e-10
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 24/106 (22%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
G ++ TW + WF+L L Y+ +E G++ L N++ + + F++
Sbjct: 15 GGRVKTWKRRWFILTDNCLYYFEYTTDKEPR---GIIPLENLSIREVLDPRKPNCFELYN 71
Query: 116 WDSK--------------------RT-ILSAVTAGIRNNWMSAIKR 140
K +SA + + WM +IK
Sbjct: 72 PSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA 117
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 54.9 bits (132), Expect = 1e-10
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 62 WTKHWFVLRGCSLLYYRDPKAEESGVL---------DGVVALNN--VTSLSEVPVARNFG 110
W+ W VL G L +++D K +G L + V L ++ + +R
Sbjct: 31 WSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKSSRKNV 90
Query: 111 FQITTWDSKRTILSAVTAGIRNNWMSAIKRT 141
++ + D ++ + I + W AI +
Sbjct: 91 LELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121
Score = 45.6 bits (108), Expect = 4e-07
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 22/95 (23%)
Query: 1 MLNKKHT-----------WTKHWFVLRGCSLLYYRDPKAEESGVL---------DGVVAL 40
+L++ T W+ W VL G L +++D K +G L + V L
Sbjct: 13 VLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVEL 72
Query: 41 NN--VTSLSEVPVARNFGFQITTWTKHWFVLRGCS 73
++ + +R ++ + ++++ S
Sbjct: 73 RGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDS 107
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 56.5 bits (135), Expect = 2e-10
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 62 WTKHWFVLRGCSLLYYRDPKAEESGVLD---GVVALNN--VTSLSEVPVARNFGFQITTW 116
W +W L+GC+L +Y V + N V ++ E P ++F F ++
Sbjct: 39 WKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHP-KKDFVFCLSNS 97
Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTAAMS 145
+ + NW++AI A +
Sbjct: 98 LGDAFLFQTTSQTELENWITAIHSACAAA 126
Score = 45.3 bits (106), Expect = 2e-06
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLD---GVVALNN--VTSLSEVPVARNFGFQI 59
+ W +W L+GC+L +Y V + N V ++ E P ++F F +
Sbjct: 36 RRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHP-KKDFVFCL 94
Query: 60 TTWTKHWFVL 69
+ F+
Sbjct: 95 SNSLGDAFLF 104
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 54.0 bits (130), Expect = 3e-10
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 19/110 (17%)
Query: 56 GFQITTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA------R 107
G + W F+LR L YY AE+ G + L S +
Sbjct: 28 GHRRKNWKVRKFILREDPAYLHYYDPAGAED---PLGAIHLRGCVVTSVESNSNGRKSEE 84
Query: 108 NFGFQITTWDSKRT--ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
F+I T + L A T R W+ AI+ + K+ PSS
Sbjct: 85 ENLFEIIT--ADEVHYFLQAATPKERTEWIKAIQMASRTG----KSGPSS 128
Score = 39.8 bits (93), Expect = 6e-05
Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 15/80 (18%)
Query: 2 LNKK----HTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA--- 52
L K+ W F+LR L YY AE+ G + L S +
Sbjct: 24 LLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAED---PLGAIHLRGCVVTSVESNSNGR 80
Query: 53 ---RNFGFQITTWTKHWFVL 69
F+I T + + L
Sbjct: 81 KSEEENLFEIITADEVHYFL 100
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 56.1 bits (134), Expect = 3e-10
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGVLD---GVVALNN--VTSLSEVPVARNFGFQITT 115
W ++W L+GC+LL+Y + + + V S+ E P + F ++
Sbjct: 38 KWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHP-KKEHVFCLSN 96
Query: 116 WDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSS 156
+ A + NW++AI A +
Sbjct: 97 SCGDVYLFQATSQTDLENWVTAIHSACASLFAKKHGKEDTV 137
Score = 44.2 bits (103), Expect = 4e-06
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLD---GVVALNN--VTSLSEVPVARNFGFQI 59
+ W ++W L+GC+LL+Y + + + V S+ E P + F +
Sbjct: 36 RRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHP-KKEHVFCL 94
Query: 60 TT 61
+
Sbjct: 95 SN 96
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 53.4 bits (128), Expect = 5e-10
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGVL--------DGVVALNNVT-SLSEVPVARNFGF 111
W W VL G SL++YR+P + V L + +R
Sbjct: 33 NWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSSRRNVL 92
Query: 112 QITTWDSKRTILSAVTAGIRNNWMSAIKRT 141
I T +L + W A++
Sbjct: 93 HIRTIPGHEFLLQSDHETELRAWHRALRTV 122
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 53.4 bits (128), Expect = 5e-10
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Query: 56 GFQITTWTKHWFVLRG-CSLLYYRDPKAEE-SGVLDGVVALNNVTSLSEVPVA------- 106
+ W ++WF L +L YY D A++ + + ++ E
Sbjct: 18 SSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRS 77
Query: 107 RNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSST 157
R+ + + R L A T W +A+ + PS +
Sbjct: 78 RDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGATVPSGPS 128
Score = 40.3 bits (94), Expect = 4e-05
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 3 NKKHTWTKHWFVLRG-CSLLYYRDPKAEE-SGVLDGVVALNNVTSLSEVPVA-------R 53
+ W ++WF L +L YY D A++ + + ++ E R
Sbjct: 19 SILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSR 78
Query: 54 NFGFQITTWTKHWFVLRGCS 73
+ + L +
Sbjct: 79 DGLLTVNLREGSRLHLCAET 98
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 55.5 bits (133), Expect = 6e-10
Identities = 15/101 (14%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA------RNFGF 111
Q + K WF + L+Y++DP + + + + ++ G
Sbjct: 282 QTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGI 341
Query: 112 QITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKAS 152
I T ++ + + T + W++A ++ +L + +
Sbjct: 342 TIVT-PDRKFLFACETESDQREWVAAFQKAVDRPMLPQEYA 381
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 52.7 bits (126), Expect = 9e-10
Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVARNFG 110
N G ++WFVL +L +Y+D + +E +++++N + + + ++
Sbjct: 21 NNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEK---KYMLSVDNLKLRDVEKGFMSSKHI 77
Query: 111 FQITT-------WDSKRTILSAVTAGIRNNWMSAIKR 140
F + D ++ L+ T ++W ++ R
Sbjct: 78 FALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLR 114
Score = 42.3 bits (99), Expect = 6e-06
Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVARNFGFQITT 61
K ++WFVL +L +Y+D + +E +++++N + + + ++ F +
Sbjct: 26 MKGGSKEYWFVLTAENLSWYKDDEEKEK---KYMLSVDNLKLRDVEKGFMSSKHIFALFN 82
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 53.6 bits (128), Expect = 9e-10
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-------ARN 108
+ + FVL L YY ++ G + ++ + + V
Sbjct: 30 KTSPLNYKERLFVLTKSMLTYYEGRAEKKY--RKGFIDVSKIKCVEIVKNDDGVIPCQNK 87
Query: 109 FGFQITTWDSKRTILSAVTAGIRNNWMSAIK 139
+ FQ+ D+ + A + R+ W+ +K
Sbjct: 88 YPFQVVH-DANTLYIFAPSPQSRDLWVKKLK 117
Score = 40.5 bits (94), Expect = 5e-05
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 7 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-------ARNFGFQI 59
+ + FVL L YY ++ G + ++ + + V + FQ+
Sbjct: 35 NYKERLFVLTKSMLTYYEGRAEKKY--RKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQV 92
Query: 60 TT 61
Sbjct: 93 VH 94
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 51.6 bits (124), Expect = 2e-09
Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 56 GFQITTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA------R 107
G + W F+LR L YY AE+ G + L S +
Sbjct: 17 GHRRKNWKVRKFILREDPAYLHYYDPAGAED---PLGAIHLRGCVVTSVESNSNGRKSEE 73
Query: 108 NFGFQITTWDSKRT--ILSAVTAGIRNNWMSAIKR 140
F+I T + L A T R W+ AI+
Sbjct: 74 ENLFEIIT--ADEVHYFLQAATPKERTEWIKAIQM 106
Score = 39.3 bits (92), Expect = 7e-05
Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 15/80 (18%)
Query: 2 LNKK----HTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA--- 52
L K+ W F+LR L YY AE+ G + L S +
Sbjct: 13 LLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAED---PLGAIHLRGCVVTSVESNSNGR 69
Query: 53 ---RNFGFQITTWTKHWFVL 69
F+I T + + L
Sbjct: 70 KSEEENLFEIITADEVHYFL 89
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 51.9 bits (124), Expect = 2e-09
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 11/98 (11%)
Query: 56 GFQITTWTKHWFVL--RGCSLLYYRDPKAE--ESGVLDGVVALNNVTSLSEVPVA----R 107
+ + +F+L + LL+Y D G + L ++ +S
Sbjct: 26 NENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKT 85
Query: 108 NFGFQITTWDSKRT-ILSAVTAGIRNNWMSAIKRTAAM 144
F F I + L A +W+ A+ + +
Sbjct: 86 PFCFVINA--LSQRYFLQANDQKDLKDWVEALNQASKS 121
Score = 40.7 bits (95), Expect = 2e-05
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 3 NKKHTWTKHWFVL--RGCSLLYYRDPKAE--ESGVLDGVVALNNVTSLSEVPVA----RN 54
+ + +F+L + LL+Y D G + L ++ +S
Sbjct: 27 ENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTP 86
Query: 55 FGFQITTWTKHWF 67
F F I ++ +F
Sbjct: 87 FCFVINALSQRYF 99
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 51.1 bits (122), Expect = 3e-09
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 61 TWTKHWFVLRGCSLLYYRDPK-AEESGVLDGVVALNNVTSLSEVPVA---RNFGFQITTW 116
+W + VLR SL +Y+D K A G V ++ + V R F++
Sbjct: 31 SWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQ 90
Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTAAMSLL 147
D K + A ++W+ + A
Sbjct: 91 DGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121
Score = 38.0 bits (88), Expect = 2e-04
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 4 KKHTWTKHWFVLRGCSLLYYRDPK-AEESGVLDGVVALNNVTSLSEVPVA---RNFGFQI 59
+W + VLR SL +Y+D K A G V ++ + V R F++
Sbjct: 28 ANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKL 87
Query: 60 TTWTKHWFVL 69
++
Sbjct: 88 GLQDGKEYLF 97
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 51.1 bits (122), Expect = 4e-09
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVA------- 106
G + W FVLR + ++E G +L V++L + V
Sbjct: 28 GHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNV 87
Query: 107 RNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAA 143
+ F++ T D + A + R W+ AIK+ +
Sbjct: 88 QGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS 124
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 51.7 bits (123), Expect = 4e-09
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA---RNFGFQITTWD 117
W + + VLRG SL Y+D + + + + ++ L ++ + R F++TT
Sbjct: 28 PWKQMYVVLRGHSLYLYKDKREQTTP-SEEEQPISVNACLIDISYSETKRKNVFRLTT-- 84
Query: 118 SKRT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
S + A W+ I+ ++ ++ D +
Sbjct: 85 SDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTNRD 123
Score = 40.2 bits (93), Expect = 7e-05
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA---RNFGFQITT 61
W + + VLRG SL Y+D + + + + ++ L ++ + R F++TT
Sbjct: 26 IRPWKQMYVVLRGHSLYLYKDKREQTTP-SEEEQPISVNACLIDISYSETKRKNVFRLTT 84
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 49.7 bits (119), Expect = 5e-09
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS 118
I W W VL+ +L YY+ E G G + L+ F I+ +
Sbjct: 14 IHGWQDRWVVLKNNALSYYKSEDETEYGCR-GSICLSKAV--ITPHDFDECRFDISV--N 68
Query: 119 KRTI-LSAVTAGIRNNWMSAIKR 140
L A R W+ AI++
Sbjct: 69 DSVWYLRAQDPDHRQQWIDAIEQ 91
Score = 40.5 bits (95), Expect = 1e-05
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 62
N H W W VL+ +L YY+ E G G + L+ F I+
Sbjct: 12 NYIHGWQDRWVVLKNNALSYYKSEDETEYGCR-GSICLSKAV--ITPHDFDECRFDISVN 68
Query: 63 TKHWF 67
W+
Sbjct: 69 DSVWY 73
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 49.9 bits (119), Expect = 1e-08
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 59 ITTWTKHWFVLR--GCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 116
+T W +FVL L Y+ + ++ G + L + F +
Sbjct: 21 VTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPR-GTLQLAGAVI--SPSDEDSHTFTVNAA 77
Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTAAM---SLLDDKASPSS 155
++ L A A R +W+S ++ ++ + + PSS
Sbjct: 78 SGEQYKLRATDAKERQHWVSRLQICTQHHTEAIGKNNSGPSS 119
Score = 36.8 bits (85), Expect = 6e-04
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 3 NKKHTWTKHWFVLR--GCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQIT 60
N W +FVL L Y+ + ++ G + L + F +
Sbjct: 19 NLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPR-GTLQLAGAV--ISPSDEDSHTFTVN 75
Query: 61 TWTKHWFVLRGCS 73
+ + LR
Sbjct: 76 AASGEQYKLRATD 88
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 49.7 bits (118), Expect = 1e-08
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 26/108 (24%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
+ +WTK W VL+ LL Y+ K + G V LN + F F++
Sbjct: 17 RGTLKSWTKLWCVLKPGVLLIYKTQKNGQ---WVGTVLLNACEIIERPSKKDGFCFKLFH 73
Query: 116 WDSKRT-----------------------ILSAVTAGIRNNWMSAIKR 140
+ I+ A + WM A++
Sbjct: 74 PLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALEL 121
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 48.0 bits (114), Expect = 4e-08
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-----RNFGFQITT 115
+W + V+ + +Y+D K+ SG+ ++ + VA + F++
Sbjct: 22 SWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKE-AICEVALDYKKKKHVFKLRL 80
Query: 116 WDSKRTILSAVTAGIRNNWMSAIK 139
D + A N W+ AI
Sbjct: 81 SDGNEYLFQAKDDEEMNTWIQAIS 104
Score = 36.1 bits (83), Expect = 7e-04
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 18/78 (23%)
Query: 1 MLNKKH------------TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSE 48
LN+KH +W + V+ + +Y+D K+ SG+ ++ +
Sbjct: 4 FLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKE-AI 62
Query: 49 VPVA-----RNFGFQITT 61
VA + F++
Sbjct: 63 CEVALDYKKKKHVFKLRL 80
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 49.9 bits (118), Expect = 4e-08
Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 11/106 (10%)
Query: 61 TWTKHWFVLRGCS-------LLYYRDPKAEESGVLD--GVVALNNVTSLSEVPVARN-FG 110
+ K +FVLR S L YY + K + L + ++++ ++N
Sbjct: 21 SMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHL 80
Query: 111 FQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSS 156
+ T D ++A + +++W A+ + + + +
Sbjct: 81 VALYTRDEHFA-IAADSEAEQDSWYQALLQLHNRAKGHHDGAAALG 125
Score = 47.6 bits (112), Expect = 3e-07
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 2 LNKKHTWTKHWFVLRGCS-------LLYYRDPKAEESGVLD--GVVALNNVTSLSEVPVA 52
L K + K +FVLR S L YY + K + L + ++++ +
Sbjct: 16 LRKPKSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADS 75
Query: 53 RN-FGFQITTWTKHWFV 68
+N + T +H+ +
Sbjct: 76 KNKHLVALYTRDEHFAI 92
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 48.5 bits (115), Expect = 4e-08
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFGF 111
R + + +HW V + +L YY+ + E G + L + +V V+ + F
Sbjct: 19 RPRKLTLKGYRQHWVVFKETTLSYYKS-QDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCI 77
Query: 112 QITTWDSKRT---ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPS 154
++ + L WM+ + + + D + S
Sbjct: 78 KLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKGRTMADSSYTS 123
Score = 40.4 bits (94), Expect = 3e-05
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFGFQITTWTK 64
+ +HW V + +L YY+ + E G + L + +V V+ + F ++ +
Sbjct: 26 KGYRQHWVVFKETTLSYYKS-QDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSP 84
Query: 65 H 65
Sbjct: 85 E 85
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 47.1 bits (112), Expect = 6e-08
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS 118
+T W WFVL L YY G G + + +V A N ++
Sbjct: 12 LTGWQPRWFVLDNGILSYYDSQDDVCKGSK-GSIKMAVCE--IKVHSADNTRMELIIPGE 68
Query: 119 KRTILSAVTAGIRNNWMSAIKRTAAMS 145
+ + AV A R W+ A+ + A
Sbjct: 69 QHFYMKAVNAAERQRWLVALGSSKASL 95
Score = 35.6 bits (82), Expect = 0.001
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 62
N W WFVL L YY G G + + + I
Sbjct: 10 NYLTGWQPRWFVLDNGILSYYDSQDDVCKGSK-GSIKMAVCE-IKVHSADNTRMELIIPG 67
Query: 63 TKHWFV 68
+H+++
Sbjct: 68 EQHFYM 73
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 46.1 bits (109), Expect = 3e-07
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 61 TWTKHWFVLRGCSLLY-----YRDPKAEESGV--LDGVVALNNVTSLSEVPVARNFGFQI 113
W K +FVL S YR+ KAE + LDG ++ + R F F
Sbjct: 24 RWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYT-VDYTDPQPGLEGGRAF-FNA 81
Query: 114 TTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSST 157
+ I ++ R W+ A+ R S + S +
Sbjct: 82 VK-EGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQSGPS 124
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 45.7 bits (108), Expect = 3e-07
Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 62 WTKHWFVLRGCSLLYYRDPKAEESG---VLDGVVALNNVTSLSEVPVA---RNFGFQITT 115
W K + + + +Y+D K +S G + + + E+ + ++
Sbjct: 32 WDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKL 91
Query: 116 WDSKRTILSAVTAGIRNNWMSAIKRTAAMS 145
+ +L A + W++++K + +
Sbjct: 92 ANGALFLLQAHDDTEMSQWVTSLKAQSDST 121
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 45.3 bits (107), Expect = 6e-07
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 13/97 (13%)
Query: 56 GFQITTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNNVT----SLSEVPVARNFG 110
G I TW +F+L+ + + Y++ V LNN + L + R
Sbjct: 18 GEYIKTWRPRYFLLKNDGTFIGYKE---RPQDVDQREAPLNNFSVAQCQLMKTERPRPNT 74
Query: 111 FQI----TTWDSKRTILSAVTAGIRNNWMSAIKRTAA 143
F I T +RT T R W +AI+ A
Sbjct: 75 FIIRCLQWTTVIERT-FHVETPEEREEWTTAIQTVAD 110
Score = 35.3 bits (81), Expect = 0.002
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 2 LNKK----HTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNNVT----SLSEVPVA 52
L+K+ TW +F+L+ + + Y++ V LNN + L +
Sbjct: 14 LHKRGEYIKTWRPRYFLLKNDGTFIGYKE---RPQDVDQREAPLNNFSVAQCQLMKTERP 70
Query: 53 RNFGFQITT 61
R F I
Sbjct: 71 RPNTFIIRC 79
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 44.6 bits (105), Expect = 8e-07
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLD------GVVALNNVTSLSEVPVARNFGFQ 112
+++WT++W VL G +LLYY + V++ FQ
Sbjct: 21 LSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQ 80
Query: 113 ITTWDSKRTIL-SAVTAGIRNNWMSAIKRTAAMS 145
+ D + W + S
Sbjct: 81 LNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114
Score = 34.6 bits (79), Expect = 0.004
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 3 NKKHT---WTKHWFVLRGCSLLYYRDPKAEES 31
+K WT++W VL G +LLYY +
Sbjct: 16 GRKPALSSWTRYWVVLSGATLLYYGAKSLRGT 47
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 44.9 bits (105), Expect = 1e-06
Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 29/109 (26%)
Query: 61 TWTKHWFVLRGCSLLYYR-DPKAEESGVLDGVVALNNVTSLSEVPV-------------- 105
+ K F+L L YY D + G G + + +T + V
Sbjct: 23 NFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRG 82
Query: 106 -------------ARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRT 141
+ FQ+ D + + T +R W+ +K
Sbjct: 83 EESSEMEQISIIERFPYPFQVVY-DEGPLYVFSPTEELRKRWIHQLKNV 130
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 43.7 bits (102), Expect = 2e-06
Identities = 19/107 (17%), Positives = 28/107 (26%), Gaps = 21/107 (19%)
Query: 61 TWTKHWFVLRG-CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA------------- 106
W K + L LLY+ + L T
Sbjct: 21 EWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASG 80
Query: 107 -------RNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSL 146
NF F I + + A + R+ W+ AI+ SL
Sbjct: 81 SAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASL 127
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 44.0 bits (103), Expect = 3e-06
Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%)
Query: 34 LDGVVALNNVTSLSEVP-------VARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESG 86
L+G + ++ +P V + + + ++W + S+ Y+ + E SG
Sbjct: 31 LEGGKTSTILGDITSIPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKE-ESSG 89
Query: 87 VLDGVVALNNVTSLSEVPVA-RNFGFQITTWDSKRT---ILSAVTAGIRNNWMSAIK 139
+ L +V ++ + F ++ ++ L +WM+A +
Sbjct: 90 TPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACR 146
Score = 35.9 bits (82), Expect = 0.003
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFGFQITTWTK 64
+ ++W + S+ Y+ + E SG + L +V ++ + F ++
Sbjct: 64 KGYKQYWCTFKDTSISCYKSKE-ESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVA 122
Query: 65 H 65
Sbjct: 123 E 123
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 42.7 bits (100), Expect = 5e-06
Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 15/102 (14%)
Query: 59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT---------SLSEVPVARNF 109
+ +++K ++VL L ++ ++ V +AL+ T + S +
Sbjct: 19 LKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDA 78
Query: 110 GFQITTWDSKRT------ILSAVTAGIRNNWMSAIKRTAAMS 145
F + + + A + +W +K + S
Sbjct: 79 KFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTSTS 120
Score = 38.8 bits (90), Expect = 9e-05
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 2 LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGF 57
L ++ +++K ++VL L ++ ++ V +AL+ T ++E +
Sbjct: 12 LERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECT-VTEHSRKNSTSS 70
Query: 58 QITTWTKHWFVLRGCS 73
+T + FVL
Sbjct: 71 PNSTGSDAKFVLHAKQ 86
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 43.2 bits (101), Expect = 9e-06
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN------VTSLSEVPVARNFGFQI- 113
+W K + LR L + L + L + + + + G I
Sbjct: 147 SWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIK 206
Query: 114 ---TTWDSKRT-ILSAVTAGIRNNWMSAIK 139
++K +L A R +WM+A +
Sbjct: 207 PNKVRNETKELRLLCAEDEQTRTSWMTAFR 236
Score = 38.6 bits (89), Expect = 4e-04
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNV 43
K +W K + LR L + L + L +
Sbjct: 144 GKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDS 183
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 39.2 bits (91), Expect = 7e-05
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 62 WTKHWFVLRGCSLLYYRDPKAEESGV------LDGVVALNNVTSLSEVPVARN---FGFQ 112
W K + ++ +L+Y + +E +D + + VT FQ
Sbjct: 20 WVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQ 79
Query: 113 ITT-----WDSKRTILSAVTAGIRNNWMSAIKRT 141
I +K +L A + + W+S + +
Sbjct: 80 ILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK 113
Score = 35.8 bits (82), Expect = 0.001
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEV 49
KK W K + ++ +L+Y + +E V+ ++ + + V
Sbjct: 16 KKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPV 61
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 39.0 bits (90), Expect = 1e-04
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 14/94 (14%)
Query: 61 TWTKHWFVLRGCS------LLYYRDP-KAEESGVLDGVVALNNVTSLSEVPVARN----- 108
W + L G S L P K V+ L++ ++E +
Sbjct: 29 KWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRDT 88
Query: 109 FGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTA 142
F + T +R L A A R +W+ AI A
Sbjct: 89 SAFFLET--KERLYLLAAPAAERGDWVQAICLLA 120
Score = 27.4 bits (60), Expect = 1.4
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 12/69 (17%)
Query: 5 KHTWTKHWFVLRGCS------LLYYRDP-KAEESGVLDGVVALNNVTSLSEVPVARN--- 54
W + L G S L P K V+ L++ ++E +
Sbjct: 27 GKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPR 86
Query: 55 --FGFQITT 61
F + T
Sbjct: 87 DTSAFFLET 95
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 37.6 bits (87), Expect = 4e-04
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 66 WFVLRGCSLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVARNFGFQITTWDSKRTIL 123
+F+L L+ + G + + V L E+ + F+IT +R ++
Sbjct: 48 YFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDC-MFEITGSTVERIVV 106
Query: 124 SAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
WM + R K+ PSS
Sbjct: 107 HCNNNQDFQEWMEQLNRLT-------KSGPSS 131
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 36.9 bits (85), Expect = 5e-04
Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 61 TWTKHWFVLRGCS--LLYYRDPKAEESGVLDGVVALNNVTSLSEVP---VARNFGFQITT 115
TW++ W + +L+ + + G L + L + P + +++
Sbjct: 22 TWSEVWAAIPMSDPQVLHLQ--GGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQW 79
Query: 116 WDSKRT-ILSAVTAGIRNNWMSAIKRTA 142
+K++ LSA +A ++ W+ + A
Sbjct: 80 --AKQSWYLSASSAELQQQWLETLSTAA 105
Score = 29.2 bits (65), Expect = 0.24
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 1 MLNKKHTWTKHWFVLRGCS--LLYYRDPKAEESGVLDGVVALNNVTSLSEVP---VARNF 55
+ TW++ W + +L+ + + G L + L + P +
Sbjct: 16 LSESGETWSEVWAAIPMSDPQVLHLQ--GGSQDGRLPRTIPLPSCKLSVPDPEERLDSGH 73
Query: 56 GFQITTWTKHWFVLR 70
+++ K + L
Sbjct: 74 VWKLQW-AKQSWYLS 87
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 35.5 bits (82), Expect = 0.004
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 59 ITTWTKHWFVLRG-CSLLYYRD-PKAEESGVLDGVVALNNVT----SLSEVPVARNFGFQ 112
I TW +F+L+ + + Y++ P+ + LNN + L + R F
Sbjct: 19 IKTWRPRYFLLKNDGTFIGYKERPQDVDQREAP----LNNFSVAQCQLMKTERPRPNTFI 74
Query: 113 ITTWDSKRTI---LSAVTAGIRNNWMSAIKRTA 142
I I T R W +AI+ A
Sbjct: 75 IRCLQWTTVIERTFHVETPEEREEWTTAIQTVA 107
Score = 29.7 bits (67), Expect = 0.41
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 7 TWTKHWFVLRG-CSLLYYRD-PKAEESGVLDGVVALNNVT----SLSEVPVARNFGFQI 59
TW +F+L+ + + Y++ P+ + LNN + L + R F I
Sbjct: 21 TWRPRYFLLKNDGTFIGYKERPQDVDQREAP----LNNFSVAQCQLMKTERPRPNTFII 75
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2;
hydrolase, phospholipase C, phosphoinositides, RHO
gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens}
PDB: 2w2w_A* 2w2x_C* 2k2j_A
Length = 124
Score = 33.2 bits (75), Expect = 0.014
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 62 WTKHWFVLRGCSLLYYRDPKAEESG------VLDGVVALN--NVTSLSEVPVARNFGFQI 113
WT+H+ + L + D + + G++ LN NV + ++F F +
Sbjct: 28 WTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQKSFVFIL 87
Query: 114 T--TWDSKRTILSAVTAGIRNNWMSAIKRTA 142
+ W +I+
Sbjct: 88 EPKQQGDPPVEFATDKVEELFEWFQSIREIT 118
Score = 29.8 bits (66), Expect = 0.18
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 4 KKHTWTKHWFVLRGCSLLYYRDPKAEESG------VLDGVVALN--NVTSLSEVPVARNF 55
WT+H+ + L + D + + G++ LN NV + ++F
Sbjct: 24 IDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQKSF 83
Query: 56 GFQI 59
F +
Sbjct: 84 VFIL 87
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 33.0 bits (75), Expect = 0.029
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 109 FGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLD 148
F+I D I SA +A +NNWM+A+ S L+
Sbjct: 315 HAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLE 354
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 33.1 bits (75), Expect = 0.033
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 1 MLNKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQIT 60
+ + TW + WF+L L Y+ +E G++ L N++ + F++
Sbjct: 222 LGGRVKTWKRRWFILTDNCLYYFEYTTDKE---PRGIIPLENLSIREVEDPRKPNCFELY 278
Query: 61 TWTKHWFVLRGCSL 74
+ V++ C
Sbjct: 279 NPSHKGQVIKACKT 292
Score = 31.2 bits (70), Expect = 0.12
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 24/105 (22%)
Query: 56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
G ++ TW + WF+L L Y+ +E G++ L N++ + F++
Sbjct: 223 GGRVKTWKRRWFILTDNCLYYFEYTTDKE---PRGIIPLENLSIREVEDPRKPNCFELYN 279
Query: 116 WDSKRTI---------------------LSAVTAGIRNNWMSAIK 139
K + +SA + + WM +IK
Sbjct: 280 PSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK 324
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism,
metal-binding, sugar ISO stress response; HET: MSE;
1.23A {Bacillus subtilis subsp}
Length = 175
Score = 31.5 bits (71), Expect = 0.061
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 5 KHTWTKH--WFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 62
K + G LY K VL + T E+ + + I
Sbjct: 75 DGQEGKQETFRCRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIPPN 134
Query: 63 TKHWF 67
TKHWF
Sbjct: 135 TKHWF 139
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 31.3 bits (71), Expect = 0.098
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 92 VALNNVTSLSEVPVARNFGFQITTWDSKRT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDK 150
+ + +S + F + + L T ++ WM + A ++ +
Sbjct: 283 FQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEM-AISNIYPEN 341
Query: 151 ASPSSSTVQ 159
A+ + Q
Sbjct: 342 ATANGHDFQ 350
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 129
Score = 30.8 bits (69), Expect = 0.11
Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 62
++ + +H++ L L +++ E + L+ + +S R+F
Sbjct: 19 SRDNLRKRHYWRLDSKCLTLFQN---ESGSKYYKEIPLSEILRISS---PRDFTNISQGS 72
Query: 63 TKHWFVLRGCSLLYY 77
H F + +++Y+
Sbjct: 73 NPHCFEIITDTMVYF 87
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 30.4 bits (68), Expect = 0.13
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 62
NK +H++ L + +++ + + L+ + ++ A+NF
Sbjct: 19 NKDTLRKRHYWRLDCKCITLFQN---NTTNRYYKEIPLSEILTVES---AQNFSLVPPGT 72
Query: 63 TKHWFVLRGCSLLYY 77
H F + + Y+
Sbjct: 73 NPHCFEIVTANATYF 87
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 31.1 bits (70), Expect = 0.14
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 94 LNNVTSLSEVPVARNFGFQITTWDSKRT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKAS 152
+ V ++E F+I + I+ A T I+ W++AI++ L + +
Sbjct: 276 MTAVG-ITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQACREA 334
Query: 153 PSSSTVQQ 160
++Q
Sbjct: 335 SQHRALEQ 342
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 31.0 bits (70), Expect = 0.14
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 110 GFQITTWDSKRT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ 160
F++ +++ + A + W+ A + M D+K S Q+
Sbjct: 329 AFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEISENQK 380
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.15
Identities = 7/27 (25%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 137 AIKR-TAAMSLLDDKASPS---SSTVQ 159
A+K+ A++ L D ++P+ +T++
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 30.6 bits (69), Expect = 0.16
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 94 LNNVTSLSEVPVARNFGFQITTWDSKRT----ILSAVTAGIRNNWMSAIKRTAAMSLLDD 149
++ + L F +T+ + +L A I W+ + +
Sbjct: 266 VSCLG-LEGNLQGDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQRDFL 324
Query: 150 KASPSSSTVQQ 160
A S Q+
Sbjct: 325 NALQSPIEYQR 335
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase,
PKB, pleckstrin homology domain, inositol phosphate,
signal transduction; HET: 4PT; 1.45A {Homo sapiens}
SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Length = 151
Score = 30.2 bits (67), Expect = 0.20
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKR 120
+ +L LYY DP + VL G + + F + T R
Sbjct: 65 FARRRQLLLTEGPHLYYVDP---VNKVLKGEIPWSQELR---PEAKNFKTFFVHT--PNR 116
Query: 121 TILSAVTAGIRNNWMSAIK 139
T +G + W I+
Sbjct: 117 TYYLMDPSGNAHKWCRKIQ 135
Score = 25.6 bits (55), Expect = 6.6
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 6/59 (10%)
Query: 3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 61
K + +L LYY DP + VL G + + F + T
Sbjct: 61 RKGLFARRRQLLLTEGPHLYYVDP---VNKVLKGEIPWSQELR---PEAKNFKTFFVHT 113
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 30.4 bits (68), Expect = 0.22
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 77 YRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTI--LSAVTAGIRNNW 134
P + +L V+ L + EV + + TWD + I L A T R NW
Sbjct: 457 TLTPTPDGKTMLRPVLRLTSA-MTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNW 515
Query: 135 MSAIKRTAAMSLLDDKAS 152
+ I L A
Sbjct: 516 CALITE--TAGSLKVPAH 531
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 30.1 bits (67), Expect = 0.22
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 90 GVVALNNVTSLSEVPVARNFGFQITTWDSKRTI--LSAVTAGIRNNWMSAIKRTAAMSLL 147
V++L + + EV F I+ + + + A + RN+W+ I+ T
Sbjct: 118 TVISLKKLI-VREVAHEEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLNR 176
Query: 148 DDKASPSS 155
D+ S
Sbjct: 177 DEDEGIPS 184
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 30.0 bits (67), Expect = 0.29
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 109 FGFQITTWDSKRT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQ 159
F + + L T ++ WM + A ++ + A+ + Q
Sbjct: 472 HMFLLIEDQGAQGYELFFKTRELKKKWMEQFEM-AISNIYPENATANGHDFQ 522
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 29.8 bits (67), Expect = 0.34
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 80 PKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT---ILSAVTAGIRNNWMS 136
++ V+ LN V + V + F I T L A+T+ +N WM
Sbjct: 301 GSSDSKQTFSPVLKLNAV-LIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWME 359
Query: 137 AIKRT 141
++
Sbjct: 360 LLEEA 364
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 29.8 bits (67), Expect = 0.35
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 77 YRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTI--LSAVTAGIRNNW 134
A+ V+ L+ V + +V F I+ D+ I L A T + W
Sbjct: 302 ILASTADSKHTFSPVIKLSTV-LVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKTVW 360
Query: 135 MSAIKRTAA 143
I R AA
Sbjct: 361 QDLICRMAA 369
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 29.8 bits (67), Expect = 0.39
Identities = 6/52 (11%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 94 LNNVTSLSEVPVARNFGFQITTWDSKRT----ILSAVTAGIRNNWMSAIKRT 141
+ + ++E F + + + +L A + + +W+ I+
Sbjct: 256 TSELG-VTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREV 306
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 29.9 bits (67), Expect = 0.39
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 80 PKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT---ILSAVTAGIRNNWMS 136
++ V+ LN V + V + F I T L A+T+ +N WM
Sbjct: 343 GSSDSKQTFSPVLKLNAV-LIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWME 401
Query: 137 AIKRT 141
++
Sbjct: 402 LLEEA 406
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 29.5 bits (66), Expect = 0.41
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 109 FGFQITTWDSKRTI-LSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ 160
F++ + + L + W+ A R LD + S + +Q+
Sbjct: 405 NAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITELQR 457
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein,
dimerization, SIG protein; HET: PTR; 2.60A {Mus
musculus}
Length = 224
Score = 29.4 bits (65), Expect = 0.43
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 8/79 (10%)
Query: 2 LNKKHTWTKHWFVLRGCS-------LLYYRDPKAEESGVLD-GVVALNNVTSLSEVPVAR 53
L W W VLR S +L Y+D G+ + + L ++ L
Sbjct: 17 LRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYE 76
Query: 54 NFGFQITTWTKHWFVLRGC 72
+ V+ G
Sbjct: 77 GLAHTLAIICLSQAVMLGF 95
Score = 25.9 bits (56), Expect = 6.0
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 57 FQITTWTKHWFVLRGCS-------LLYYRDPKAEESGVLD-GVVALNNVTSLSEVPVARN 108
W W VLR S +L Y+D G+ + + L ++ L
Sbjct: 18 RDGKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEG 77
Query: 109 FGFQITTW-DSKRTILSAVTAGIRNNWMSAIKRTA 142
+ S+ +L + W + I+
Sbjct: 78 LAHTLAIICLSQAVMLGFDSHEAMCAWDTRIRYAL 112
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; beta-barrel, hydrolase; NMR {Rattus norvegicus}
SCOP: b.55.1.1
Length = 150
Score = 28.5 bits (63), Expect = 0.70
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 6 HTWTKHWFVLRGCSLLYYRDPKAEE 30
H W H+FVL + Y + +++
Sbjct: 15 HEWYPHYFVLTSSKIYYSEETSSDQ 39
Score = 26.2 bits (57), Expect = 4.1
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 61 TWTKHWFVLRGCSLLYYRDPKAEE 84
W H+FVL + Y + +++
Sbjct: 16 EWYPHYFVLTSSKIYYSEETSSDQ 39
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 28.7 bits (64), Expect = 0.80
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 77 YRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTI--LSAVTAGIRNNW 134
P + +L V+ L + EV + + TWD + I L A T R NW
Sbjct: 304 TLTPTPDGKTMLRPVLRLTSA-MTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNW 362
Query: 135 MSAIKRTAA 143
+ I TA
Sbjct: 363 CALITETAG 371
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex,
transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae}
PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Length = 456
Score = 27.2 bits (61), Expect = 2.9
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 52 ARNFG----FQITTWTKHWFVLRG 71
AR G F ++T T WF RG
Sbjct: 400 ARGIGISRLFALSTNTGEWFAERG 423
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 27.0 bits (60), Expect = 3.1
Identities = 5/37 (13%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 108 NFGFQITTWDSKRT---ILSAVTAGIRNNWMSAIKRT 141
F+++ + ++ L A + W++ I++
Sbjct: 308 KNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQA 344
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 26.5 bits (58), Expect = 5.1
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 7/53 (13%)
Query: 96 NVTSLSEVPVARNFGFQITTWDSKRT-------ILSAVTAGIRNNWMSAIKRT 141
V +L N +I S+ L + R +++ ++
Sbjct: 312 QVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSI 364
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.130 0.401
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,427,101
Number of extensions: 129252
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 156
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)