BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy893
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
Ananatis
Length = 501
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 118/531 (22%), Positives = 199/531 (37%), Gaps = 83/531 (15%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
AG GL A L AG+ V +LE+R GG A E GF F P + D
Sbjct: 9 AGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYED-QGFTFDAG--------PTVITD 59
Query: 62 LELKKHGLKLLTRDPRSYTPLSPDK------WTNKAKSLTLGLDPQKNYEQIARFSVKDA 115
+ L + + Y L P W + K D + QI +F+ +D
Sbjct: 60 PSAIEELFALAGKQLKEYVELLPVTPFYRLCWES-GKVFNYDNDQTRLEAQIQQFNPRDV 118
Query: 116 QNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSA----FS 171
+ + ++ LD + + L + R ++ L A +S
Sbjct: 119 EGYRQF----------LDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYS 168
Query: 172 ILNDWFESEPLKATL-LTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMG 230
+ + E E L+ L+G +P + S+ Y L+H + E G W +P GG G
Sbjct: 169 KVASYIEDEHLRQAFSFHSLLVGG--NPFATSSIYTLIHAL----EREWGVW-FPRGGTG 221
Query: 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLL 290
A+ Q + + Q G ++ + V+ + +K + + +G + V SN T
Sbjct: 222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYR 281
Query: 291 DLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSI--H 348
DL+ + + + +Q+ ++ + + L HHH + H
Sbjct: 282 DLLSQHPAAVKQSNKLQTKRMSNSLFVLYFGLN------------------HHHDQLAHH 323
Query: 349 LNC------EDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
C E + ++F+ G+ + + P D++L+P G C +
Sbjct: 324 TVCFGPRYRELIDEIFN-----HDGLAEDFSLY-LHAPCVTDSSLAPEG---CGSYYVLA 374
Query: 403 PYKLAG--DRDWTEEDKANYATNVFSSIEQ-YCPGFTQDIVGYEILTPPDLEKEFGLTGG 459
P G + DWT E +F+ +EQ Y PG +V + + TP D + G
Sbjct: 375 PVPHLGTANLDWTVEGP-KLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHG 433
Query: 460 NIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPG 510
+ F L Q + RP + I +L L G+G HPG G+ G G
Sbjct: 434 SAFSVEPVLTQSAWFRP------HNRDKTITNLYLVGAGTHPGAGIPGVIG 478
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From Methanosarcina
Mazei. Northeast Structural Genomics Consortium Target
Id Mar208
Length = 425
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 111/289 (38%), Gaps = 57/289 (19%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
AG GL+SAA L++AG V V ER + GG +F+ SY K
Sbjct: 8 AGLGGLLSAARLSKAGHEVEVFERLPITGG-----------RFTNLSY----------KG 46
Query: 62 LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
+L L P PL+ K + ++ ++ R +K
Sbjct: 47 FQLSSGAFHXLPNGPGG--PLA-----CFLKEVEASVNIVRSEXTTVRVPLKKGN----- 94
Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCS------AFSILND 175
+ + DI+ +DF +LL Y + + +LL S + S L
Sbjct: 95 -------PDYVKGFKDISFNDFPSLLSY-------KDRXKIALLIVSTRKNRPSGSSLQA 140
Query: 176 WFESEPLKATLL--TDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVS 233
W +S+ L+ D G +S S + ++ G PEGG +
Sbjct: 141 WIKSQVSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENXYRFGGT-GIPEGGCKGII 199
Query: 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSN 282
AL A+G ++ T Q V++I +++ K A+G++ + A V+SN
Sbjct: 200 DALETVISANGGKIHTGQEVSKILIENGK-AAGIIADDRIHDADLVISN 247
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI 38
AG +GL +A L +AGLSVAVLE R +GG T+ I
Sbjct: 15 AGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTI 51
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI 38
AG +GL +A L +AGLSVAV+E R +GG T+ I
Sbjct: 13 AGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI 49
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI 38
AG +GL +A L +AGLSVAV+E R +GG T+ I
Sbjct: 13 AGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI 49
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI 38
AG +GL +A L +AGLSVAV+E R +GG T+ I
Sbjct: 13 AGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI 49
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI 38
AG +GL +A L +AGLSVAV+E R +GG T+ I
Sbjct: 13 AGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI 49
>pdb|1MPR|A Chain A, Maltoporin From Salmonella Typhimurium
pdb|1MPR|B Chain B, Maltoporin From Salmonella Typhimurium
pdb|1MPR|C Chain C, Maltoporin From Salmonella Typhimurium
pdb|2MPR|A Chain A, Maltoporin From Salmonella Typhimurium
pdb|2MPR|B Chain B, Maltoporin From Salmonella Typhimurium
pdb|2MPR|C Chain C, Maltoporin From Salmonella Typhimurium
Length = 427
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDS-----DKRASGVVTN---GLEIKAKYV 279
G G +S A RS +A G+ F+SQ + + D+ D R +G+ TN LE+ Y
Sbjct: 135 GFGKLSLAATRSTEAGGSYTFSSQNIYDEVKDTANDVFDVRLAGLQTNPDGVLELGVDYG 194
Query: 280 LSNTTAKCTLLDLIPK 295
+NTT L D K
Sbjct: 195 RANTTDGYKLADGASK 210
>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum,
Pfl2060c
Length = 475
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 219 KGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEI 274
K + YP G+G + + +R +G ++ V + D D + G+ ++ EI
Sbjct: 245 KSPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEI 300
>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi
pdb|3CPH|H Chain H, Crystal Structure Of Sec4 In Complex With Rab-Gdi
pdb|3CPI|G Chain G, Crystal Structure Of Yeast Rab-Gdi
pdb|3CPI|H Chain H, Crystal Structure Of Yeast Rab-Gdi
pdb|3CPJ|G Chain G, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 451
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 198 PHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEIT 257
P PS +LL+ A K + YP G+G + Q AR + G + E+
Sbjct: 209 PARPSFERILLY-CQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVL 267
Query: 258 LDSDK-RASGVVTNGLEIKAKYVLSNTT---AKC 287
D + GV T KA V+++ T KC
Sbjct: 268 YKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKC 301
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 386 TLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEIL 445
+ P G + L Q+ K+ T +++ N+ S++ CP QD+ + +
Sbjct: 2189 VIDPSGQAMEFLMNQYADKKITK----TSFLDSSFMKNLESALRFGCPLLVQDVENIDPV 2244
Query: 446 TPPDLEKEFGLTGGNIF 462
P L KE GG I
Sbjct: 2245 LNPVLNKEIRKKGGRIL 2261
>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|2BCG|G Chain G, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 453
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 198 PHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEIT 257
P PS +LL+ A K + YP G+G + Q AR + G + E+
Sbjct: 211 PARPSFERILLY-CQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVL 269
Query: 258 LDSDK-RASGVVTNGLEIKAKYVLSNTT---AKC 287
D + GV T KA V+++ T KC
Sbjct: 270 YKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKC 303
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 386 TLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEIL 445
+ P G + L Q+ K+ T +++ N+ S++ CP QD+ + +
Sbjct: 2311 VIDPSGQAMEFLMNQYADKKITK----TSFLDSSFMKNLESALRFGCPLLVQDVENIDPV 2366
Query: 446 TPPDLEKEFGLTGGNIF 462
P L KE GG I
Sbjct: 2367 LNPVLNKEIRKKGGRIL 2383
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR 26
AG GL +A +LAR G+ V V+ERR
Sbjct: 13 AGLGGLSTAMFLARQGVRVLVVERR 37
>pdb|2X7G|A Chain A, Structure Of Human Serine-Arginine-Rich Protein-Specific
Kinase 2 (Srpk2) Bound To Purvalanol B
Length = 389
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 110 FSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYN--LFTRRGEMKDVYSLLTC 167
F +++ + + HI I LL + P F Y+ F RRGE++ + L
Sbjct: 285 FEPHSGEDYSRDEDHIAHIIELLGSI----PRHFALSGKYSREFFNRRGELRHITKLKPW 340
Query: 168 SAFSILNDWFESEPLKATLLTDGLI 192
S F +L + + A TD LI
Sbjct: 341 SLFDVLVEKYGWPHEDAAQFTDFLI 365
>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
Length = 699
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 412 WTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFH-GALSLNQ 470
WT++D+ +A + IEQY +D+V + PP ++ F + G NI G LS+
Sbjct: 552 WTDDDRTEFAARTKALIEQYHAYTPRDLVDHP--GPPHVQGAFTI-GENIGDLGGLSIAL 608
Query: 471 LLFNRPLPIQGPSSP 485
L + L + G +P
Sbjct: 609 LAYQ--LSLNGNPAP 621
>pdb|2Q6U|A Chain A, Semet-Substituted Form Of Nikd
Length = 384
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 225 PEGGMGAVSQALA---RSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLS 281
P+GG V LA AQA+GA L +TVTE+ D+D S G K VL+
Sbjct: 144 PDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADG-VSVTTDRGTYRAGKVVLA 202
Query: 282 NTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTK 317
LL+ + A+ + A+PVT+
Sbjct: 203 CGPYTNDLLEPLGARLAYSVYEXAIAAYRQATPVTE 238
>pdb|2OLN|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Closed Form At 1.15 A
Resolution
pdb|2OLO|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Open Form At 1.9a Resolution
Length = 397
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 225 PEGGMGAVSQALA---RSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLS 281
P+GG V LA AQA+GA L +TVTE+ D+D S G K VL+
Sbjct: 145 PDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADG-VSVTTDRGTYRAGKVVLA 203
Query: 282 NTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTK 317
LL+ + A+ + A+PVT+
Sbjct: 204 CGPYTNDLLEPLGARLAYSVYEMAIAAYRQATPVTE 239
>pdb|3HZL|A Chain A, Tyr258phe Mutant Of Nikd, An Unusual Amino Acid Oxidase
Essential For Nikkomycin Biosynthesis: Open Form At
1.55a Resolution
Length = 397
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 225 PEGGMGAVSQALA---RSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLS 281
P+GG V LA AQA+GA L +TVTE+ D+D S G K VL+
Sbjct: 145 PDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADG-VSVTTDRGTYRAGKVVLA 203
Query: 282 NTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTK 317
LL+ + A+ + A+PVT+
Sbjct: 204 CGPYTNDLLEPLGARLAYSVYEMAIAAYRQATPVTE 239
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIP---------------GFQFSR 46
+G G V+A A+ G +E+ LGG + IP G F+
Sbjct: 14 SGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFAS 73
Query: 47 ASYLLSLLRPHIYKDLELKKHGLKLLT 73
+S +R ++ K +E K +K LT
Sbjct: 74 RGIEMSEVRLNLDKMMEQKSTAVKALT 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,840,921
Number of Sequences: 62578
Number of extensions: 724512
Number of successful extensions: 1893
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1866
Number of HSP's gapped (non-prelim): 47
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)