Query psy893
Match_columns 523
No_of_seqs 266 out of 2312
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 23:04:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4254|consensus 100.0 3.5E-66 7.5E-71 486.5 37.7 507 1-521 21-546 (561)
2 TIGR02734 crtI_fam phytoene de 100.0 1.9E-61 4.1E-66 503.9 46.0 480 1-523 5-494 (502)
3 TIGR02730 carot_isom carotene 100.0 1.1E-56 2.3E-61 465.6 46.3 475 1-522 7-493 (493)
4 TIGR02733 desat_CrtD C-3',4' d 100.0 1.9E-56 4.1E-61 464.8 40.9 462 1-520 8-491 (492)
5 COG1233 Phytoene dehydrogenase 100.0 2E-54 4.4E-59 444.4 39.2 468 1-521 10-481 (487)
6 PLN02612 phytoene desaturase 100.0 3.4E-32 7.5E-37 284.4 35.7 427 1-522 100-549 (567)
7 PRK07233 hypothetical protein; 100.0 6.9E-32 1.5E-36 277.6 35.9 415 1-522 6-432 (434)
8 COG1232 HemY Protoporphyrinoge 100.0 9.1E-29 2E-33 244.5 28.2 411 1-519 7-444 (444)
9 TIGR02731 phytoene_desat phyto 100.0 5.3E-28 1.1E-32 249.3 34.2 421 1-518 6-453 (453)
10 TIGR02732 zeta_caro_desat caro 100.0 2.9E-28 6.2E-33 250.3 30.8 441 1-518 6-474 (474)
11 PRK11883 protoporphyrinogen ox 100.0 3.2E-28 6.8E-33 251.6 29.7 417 1-519 7-450 (451)
12 PLN02487 zeta-carotene desatur 100.0 9.6E-28 2.1E-32 247.7 31.6 439 1-521 82-553 (569)
13 TIGR00562 proto_IX_ox protopor 100.0 7.2E-28 1.6E-32 249.4 29.8 416 1-522 9-461 (462)
14 PRK12416 protoporphyrinogen ox 100.0 4.4E-27 9.4E-32 243.2 29.3 421 1-521 8-461 (463)
15 PRK07208 hypothetical protein; 100.0 7.7E-26 1.7E-30 235.0 30.5 414 1-520 11-460 (479)
16 TIGR03467 HpnE squalene-associ 99.9 1.4E-25 3E-30 229.8 29.3 400 8-519 1-419 (419)
17 PLN02576 protoporphyrinogen ox 99.9 1.9E-25 4.1E-30 233.2 30.7 426 1-521 19-487 (496)
18 PF01593 Amino_oxidase: Flavin 99.9 6.2E-27 1.3E-31 241.2 11.4 238 224-518 206-450 (450)
19 PLN02268 probable polyamine ox 99.9 2.6E-24 5.7E-29 220.8 30.0 407 1-521 7-434 (435)
20 PLN02529 lysine-specific histo 99.9 2.1E-22 4.6E-27 212.1 31.3 410 1-521 167-598 (738)
21 PLN02328 lysine-specific histo 99.9 6.5E-22 1.4E-26 209.2 28.8 266 1-325 245-525 (808)
22 PLN03000 amine oxidase 99.9 1.6E-21 3.4E-26 206.0 29.1 242 220-522 371-624 (881)
23 PLN02676 polyamine oxidase 99.9 1.5E-21 3.2E-26 200.8 27.7 241 226-522 220-474 (487)
24 COG1231 Monoamine oxidase [Ami 99.9 1E-21 2.2E-26 189.6 24.4 239 224-521 203-447 (450)
25 PLN02568 polyamine oxidase 99.9 4.1E-21 8.8E-26 198.8 28.6 99 222-325 234-338 (539)
26 PLN02976 amine oxidase 99.9 1.9E-19 4.1E-24 195.1 28.5 242 223-522 929-1187(1713)
27 COG3349 Uncharacterized conser 99.8 1E-19 2.2E-24 179.3 19.0 433 1-521 7-463 (485)
28 KOG0029|consensus 99.8 2.3E-19 5E-24 182.3 20.7 240 223-522 212-460 (501)
29 PTZ00363 rab-GDP dissociation 99.8 3.8E-17 8.2E-22 164.6 26.8 320 1-400 11-358 (443)
30 KOG1276|consensus 99.8 2.1E-17 4.6E-22 156.9 21.7 421 1-518 18-490 (491)
31 KOG0685|consensus 99.8 2.8E-16 6E-21 151.9 26.3 251 224-521 217-491 (498)
32 COG2907 Predicted NAD/FAD-bind 99.7 2E-16 4.4E-21 146.1 15.9 270 1-319 15-302 (447)
33 COG3380 Predicted NAD/FAD-depe 99.7 1.8E-15 3.9E-20 135.4 13.5 91 226-325 104-198 (331)
34 PRK13977 myosin-cross-reactive 99.5 5.5E-13 1.2E-17 135.8 14.9 50 1-50 29-83 (576)
35 PF13450 NAD_binding_8: NAD(P) 99.4 4.1E-13 8.9E-18 98.2 4.2 52 1-53 3-54 (68)
36 PF01266 DAO: FAD dependent ox 99.2 1.4E-10 3E-15 116.0 12.4 62 224-287 138-203 (358)
37 COG2081 Predicted flavoprotein 99.1 2.5E-09 5.4E-14 102.6 16.0 64 219-285 100-165 (408)
38 TIGR00031 UDP-GALP_mutase UDP- 99.1 6.7E-10 1.5E-14 109.7 12.5 59 1-60 8-67 (377)
39 TIGR01377 soxA_mon sarcosine o 99.1 1.1E-07 2.3E-12 96.1 26.8 56 229-287 144-200 (380)
40 PF00996 GDI: GDP dissociation 99.1 9.7E-09 2.1E-13 102.6 18.6 248 1-282 11-284 (438)
41 TIGR01373 soxB sarcosine oxida 99.1 3.5E-07 7.7E-12 93.2 30.6 57 230-287 183-240 (407)
42 PRK11259 solA N-methyltryptoph 99.0 2.6E-07 5.6E-12 93.2 27.0 60 230-294 149-209 (376)
43 COG0579 Predicted dehydrogenas 99.0 1.8E-08 3.9E-13 100.0 15.3 58 229-287 152-211 (429)
44 PF03486 HI0933_like: HI0933-l 98.9 5.7E-09 1.2E-13 104.6 11.7 62 224-286 102-165 (409)
45 PRK11728 hydroxyglutarate oxid 98.9 1.5E-08 3.3E-13 102.7 14.2 56 229-287 148-204 (393)
46 KOG2820|consensus 98.9 1.2E-06 2.7E-11 81.9 24.0 64 230-295 153-218 (399)
47 PRK00711 D-amino acid dehydrog 98.9 9.8E-08 2.1E-12 97.7 17.7 58 229-287 200-257 (416)
48 PRK11101 glpA sn-glycerol-3-ph 98.8 3.6E-08 7.8E-13 103.6 13.5 58 229-287 148-211 (546)
49 PRK12409 D-amino acid dehydrog 98.8 1.1E-07 2.3E-12 97.1 16.5 58 229-287 196-258 (410)
50 TIGR03329 Phn_aa_oxid putative 98.7 2.2E-07 4.8E-12 96.0 15.3 55 229-287 182-237 (460)
51 KOG1439|consensus 98.7 3.9E-06 8.4E-11 80.4 20.8 249 1-284 11-286 (440)
52 COG0562 Glf UDP-galactopyranos 98.7 8.2E-08 1.8E-12 89.0 9.3 62 1-62 8-71 (374)
53 PTZ00383 malate:quinone oxidor 98.7 2.7E-07 5.8E-12 95.0 14.2 57 229-287 210-273 (497)
54 TIGR03364 HpnW_proposed FAD de 98.7 4.6E-07 9.9E-12 91.0 15.2 57 229-294 144-202 (365)
55 PF06100 Strep_67kDa_ant: Stre 98.6 5.6E-07 1.2E-11 89.5 14.2 47 1-47 9-60 (500)
56 TIGR02485 CobZ_N-term precorri 98.6 8.9E-07 1.9E-11 90.9 16.3 63 224-286 117-182 (432)
57 TIGR01813 flavo_cyto_c flavocy 98.6 6.2E-07 1.3E-11 92.3 14.8 58 230-287 130-192 (439)
58 PRK08274 tricarballylate dehyd 98.6 1.6E-06 3.4E-11 90.0 17.4 61 225-286 126-191 (466)
59 PRK01747 mnmC bifunctional tRN 98.6 7.7E-07 1.7E-11 96.2 15.1 61 224-287 399-463 (662)
60 PF00890 FAD_binding_2: FAD bi 98.6 4.9E-07 1.1E-11 92.5 12.5 59 228-287 139-203 (417)
61 PRK12845 3-ketosteroid-delta-1 98.6 3.7E-06 8.1E-11 88.5 19.3 62 224-287 212-278 (564)
62 PRK07121 hypothetical protein; 98.6 2.4E-06 5.1E-11 89.2 17.5 60 228-287 175-239 (492)
63 PRK06481 fumarate reductase fl 98.5 1.9E-06 4.1E-11 90.0 15.1 56 230-286 190-250 (506)
64 PRK12842 putative succinate de 98.5 4.4E-06 9.5E-11 88.7 17.9 57 230-287 214-275 (574)
65 PRK12835 3-ketosteroid-delta-1 98.5 4.2E-06 9E-11 88.7 16.3 59 229-287 212-275 (584)
66 COG0578 GlpA Glycerol-3-phosph 98.5 2.7E-06 5.7E-11 86.6 14.0 61 230-294 164-230 (532)
67 PRK04176 ribulose-1,5-biphosph 98.5 3E-06 6.4E-11 80.0 13.4 59 230-288 104-174 (257)
68 TIGR00275 flavoprotein, HI0933 98.5 5.3E-06 1.1E-10 84.0 16.1 58 228-287 103-160 (400)
69 PLN02464 glycerol-3-phosphate 98.4 7.1E-06 1.5E-10 87.6 16.9 59 229-287 231-296 (627)
70 KOG2844|consensus 98.4 6.6E-05 1.4E-09 76.6 22.3 62 224-287 178-243 (856)
71 TIGR00292 thiazole biosynthesi 98.4 5.9E-06 1.3E-10 77.7 13.7 57 230-287 100-170 (254)
72 PRK06134 putative FAD-binding 98.4 1.8E-05 3.9E-10 84.1 18.9 57 230-287 217-278 (581)
73 TIGR01320 mal_quin_oxido malat 98.4 9.9E-06 2.2E-10 83.7 16.5 63 224-287 169-240 (483)
74 PRK12844 3-ketosteroid-delta-1 98.4 8.4E-06 1.8E-10 86.1 15.2 57 230-287 208-269 (557)
75 COG0665 DadA Glycine/D-amino a 98.3 8.5E-06 1.9E-10 82.5 14.5 55 230-287 156-212 (387)
76 COG1635 THI4 Ribulose 1,5-bisp 98.3 3.7E-07 7.9E-12 80.3 3.7 34 1-34 37-70 (262)
77 PRK12843 putative FAD-binding 98.3 1.9E-05 4E-10 83.9 17.4 58 230-288 221-283 (578)
78 PRK10157 putative oxidoreducta 98.3 5.6E-06 1.2E-10 84.7 12.1 61 231-292 109-169 (428)
79 PRK06175 L-aspartate oxidase; 98.3 1.3E-05 2.8E-10 82.0 14.2 58 229-287 127-189 (433)
80 PRK05257 malate:quinone oxidor 98.3 2.6E-05 5.7E-10 80.7 16.5 58 229-287 182-246 (494)
81 COG2509 Uncharacterized FAD-de 98.3 1.8E-05 3.9E-10 77.4 14.0 58 229-287 172-230 (486)
82 PRK13339 malate:quinone oxidor 98.3 2.8E-05 6.1E-10 80.0 16.2 59 229-287 183-247 (497)
83 COG0644 FixC Dehydrogenases (f 98.3 1.2E-05 2.6E-10 81.4 13.4 64 231-295 96-160 (396)
84 PRK12839 hypothetical protein; 98.3 7.7E-05 1.7E-09 78.9 19.6 58 230-287 214-276 (572)
85 PRK06452 sdhA succinate dehydr 98.3 2.2E-05 4.7E-10 83.1 15.5 57 230-287 136-198 (566)
86 TIGR01988 Ubi-OHases Ubiquinon 98.2 1.4E-05 2.9E-10 80.9 13.1 62 231-294 107-170 (385)
87 PRK12266 glpD glycerol-3-phosp 98.2 3.5E-05 7.5E-10 80.6 16.3 56 230-287 155-216 (508)
88 TIGR01812 sdhA_frdA_Gneg succi 98.2 2.5E-05 5.5E-10 83.0 15.6 57 230-287 129-191 (566)
89 TIGR01811 sdhA_Bsu succinate d 98.2 3.3E-05 7.2E-10 82.2 15.7 56 231-286 130-195 (603)
90 PRK07573 sdhA succinate dehydr 98.2 2.8E-05 6.1E-10 83.3 14.9 55 232-287 172-232 (640)
91 PRK07588 hypothetical protein; 98.2 1.3E-05 2.7E-10 81.3 11.7 60 231-293 104-164 (391)
92 PRK08958 sdhA succinate dehydr 98.2 7.3E-05 1.6E-09 79.4 17.4 59 229-287 142-206 (588)
93 PRK10015 oxidoreductase; Provi 98.2 2.6E-05 5.7E-10 79.7 13.3 60 231-291 109-168 (429)
94 PRK06847 hypothetical protein; 98.2 2E-05 4.4E-10 79.3 12.4 62 230-293 107-169 (375)
95 PRK07843 3-ketosteroid-delta-1 98.2 3.7E-05 8E-10 81.3 14.7 58 229-287 207-269 (557)
96 PRK12837 3-ketosteroid-delta-1 98.2 5.5E-05 1.2E-09 79.3 15.8 57 230-287 173-235 (513)
97 PRK06184 hypothetical protein; 98.1 2.1E-05 4.5E-10 82.5 12.6 63 231-294 110-175 (502)
98 TIGR01984 UbiH 2-polyprenyl-6- 98.1 2.1E-05 4.5E-10 79.5 12.1 63 230-294 105-169 (382)
99 PRK07190 hypothetical protein; 98.1 3.8E-05 8.3E-10 79.7 14.2 62 231-294 110-172 (487)
100 PRK07045 putative monooxygenas 98.1 4.6E-05 9.9E-10 77.2 14.0 62 231-292 107-170 (388)
101 COG0654 UbiH 2-polyprenyl-6-me 98.1 4.2E-05 9.2E-10 77.3 13.6 64 229-294 103-169 (387)
102 PRK08773 2-octaprenyl-3-methyl 98.1 3.5E-05 7.6E-10 78.1 13.1 63 230-294 113-176 (392)
103 PF01946 Thi4: Thi4 family; PD 98.1 1.9E-06 4.1E-11 76.4 3.0 34 1-34 24-57 (230)
104 PRK13369 glycerol-3-phosphate 98.1 5.3E-05 1.1E-09 79.2 14.2 56 230-287 155-215 (502)
105 PRK07804 L-aspartate oxidase; 98.1 0.00015 3.2E-09 76.5 17.0 58 230-287 144-210 (541)
106 PRK08626 fumarate reductase fl 98.1 9.3E-05 2E-09 79.5 15.5 59 228-287 156-220 (657)
107 PTZ00306 NADH-dependent fumara 98.1 9.9E-05 2.1E-09 84.5 16.6 58 230-287 544-620 (1167)
108 PRK07333 2-octaprenyl-6-methox 98.0 3.1E-05 6.7E-10 78.9 11.3 63 230-294 111-174 (403)
109 TIGR02032 GG-red-SF geranylger 98.0 7E-05 1.5E-09 72.6 13.3 62 231-294 92-155 (295)
110 PTZ00139 Succinate dehydrogena 98.0 0.00014 2.9E-09 77.8 16.4 57 230-287 166-229 (617)
111 PRK09078 sdhA succinate dehydr 98.0 0.00018 3.9E-09 76.7 16.9 58 230-287 149-212 (598)
112 PRK08401 L-aspartate oxidase; 98.0 0.00022 4.9E-09 73.8 17.2 56 230-287 120-175 (466)
113 PRK05714 2-octaprenyl-3-methyl 98.0 5E-05 1.1E-09 77.4 12.1 63 231-295 113-176 (405)
114 PLN00128 Succinate dehydrogena 98.0 0.00017 3.6E-09 77.2 16.4 58 230-287 187-250 (635)
115 PRK06854 adenylylsulfate reduc 98.0 0.00023 4.9E-09 76.0 17.4 57 230-287 132-195 (608)
116 PRK05945 sdhA succinate dehydr 98.0 8.2E-05 1.8E-09 79.1 13.9 58 229-287 134-197 (575)
117 PRK05329 anaerobic glycerol-3- 98.0 4.7E-05 1E-09 76.8 11.1 55 231-286 260-317 (422)
118 PRK07395 L-aspartate oxidase; 98.0 0.00011 2.4E-09 77.4 14.1 58 229-286 133-196 (553)
119 PRK08275 putative oxidoreducta 98.0 0.00015 3.2E-09 76.8 15.2 58 230-287 137-200 (554)
120 PRK12834 putative FAD-binding 98.0 0.00021 4.6E-09 75.6 16.2 34 1-34 11-46 (549)
121 PRK06263 sdhA succinate dehydr 98.0 0.00018 3.9E-09 76.0 15.5 58 230-287 134-197 (543)
122 PRK08163 salicylate hydroxylas 98.0 8.7E-05 1.9E-09 75.4 12.6 61 231-293 110-172 (396)
123 TIGR00551 nadB L-aspartate oxi 98.0 0.00035 7.5E-09 72.9 17.2 57 230-287 128-189 (488)
124 PRK06834 hypothetical protein; 97.9 8.9E-05 1.9E-09 77.0 12.5 62 231-294 101-163 (488)
125 PRK07057 sdhA succinate dehydr 97.9 0.00041 8.9E-09 73.9 17.5 58 230-287 148-211 (591)
126 PRK07803 sdhA succinate dehydr 97.9 0.00021 4.7E-09 76.5 15.4 58 229-287 137-213 (626)
127 PRK07364 2-octaprenyl-6-methox 97.9 7.4E-05 1.6E-09 76.4 11.5 62 231-294 122-188 (415)
128 PRK08243 4-hydroxybenzoate 3-m 97.9 8.8E-05 1.9E-09 75.2 11.9 62 231-294 104-170 (392)
129 PRK07608 ubiquinone biosynthes 97.9 6.8E-05 1.5E-09 75.9 10.7 62 230-294 111-174 (388)
130 PLN02815 L-aspartate oxidase 97.9 0.00023 5E-09 75.4 14.8 58 230-287 155-222 (594)
131 TIGR02462 pyranose_ox pyranose 97.9 0.00036 7.7E-09 72.5 15.8 52 242-293 225-285 (544)
132 TIGR02360 pbenz_hydroxyl 4-hyd 97.9 0.00015 3.2E-09 73.4 12.9 65 230-295 103-171 (390)
133 PRK08244 hypothetical protein; 97.9 0.00019 4.2E-09 75.1 14.0 62 231-294 101-166 (493)
134 PRK07512 L-aspartate oxidase; 97.9 0.00021 4.5E-09 74.8 14.0 58 229-287 135-197 (513)
135 PRK08641 sdhA succinate dehydr 97.9 0.0003 6.5E-09 74.9 15.4 58 230-287 133-200 (589)
136 PRK06069 sdhA succinate dehydr 97.9 0.00024 5.3E-09 75.6 14.6 57 230-287 137-200 (577)
137 PRK08132 FAD-dependent oxidore 97.8 0.00024 5.3E-09 75.3 13.8 63 231-294 126-192 (547)
138 TIGR03377 glycerol3P_GlpA glyc 97.8 0.00022 4.7E-09 75.0 13.3 58 229-287 127-190 (516)
139 TIGR03197 MnmC_Cterm tRNA U-34 97.8 0.00015 3.3E-09 73.1 11.4 61 224-287 126-190 (381)
140 KOG2404|consensus 97.8 0.00025 5.4E-09 66.2 11.4 33 1-33 16-48 (477)
141 PRK08850 2-octaprenyl-6-methox 97.8 0.00019 4.2E-09 73.1 11.9 62 231-294 112-175 (405)
142 TIGR01176 fum_red_Fp fumarate 97.8 0.00061 1.3E-08 72.3 15.6 58 229-287 131-195 (580)
143 PRK08020 ubiF 2-octaprenyl-3-m 97.8 0.00032 7E-09 71.1 12.8 62 231-294 113-176 (391)
144 PRK06185 hypothetical protein; 97.7 0.00034 7.4E-09 71.3 12.8 63 231-294 109-176 (407)
145 PRK08205 sdhA succinate dehydr 97.7 0.00083 1.8E-08 71.5 15.7 58 230-287 140-206 (583)
146 PRK09231 fumarate reductase fl 97.7 0.00086 1.9E-08 71.3 15.6 57 230-287 133-196 (582)
147 PRK06183 mhpA 3-(3-hydroxyphen 97.7 0.0004 8.7E-09 73.4 13.1 62 231-294 114-181 (538)
148 PRK08071 L-aspartate oxidase; 97.7 0.0006 1.3E-08 71.3 14.1 56 230-287 130-190 (510)
149 COG3573 Predicted oxidoreducta 97.7 0.00028 6.2E-09 66.2 9.8 33 1-33 12-46 (552)
150 PF00732 GMC_oxred_N: GMC oxid 97.7 0.00021 4.6E-09 69.4 9.6 68 224-293 186-263 (296)
151 COG5044 MRS6 RAB proteins gera 97.6 0.0026 5.6E-08 60.8 15.5 61 222-284 221-281 (434)
152 PF13738 Pyr_redox_3: Pyridine 97.5 7.6E-05 1.6E-09 68.0 3.9 54 231-286 83-137 (203)
153 COG1148 HdrA Heterodisulfide r 97.5 8.8E-05 1.9E-09 73.0 3.7 36 1-36 131-166 (622)
154 TIGR02061 aprA adenosine phosp 97.5 0.0051 1.1E-07 65.4 17.0 57 231-287 127-191 (614)
155 PLN02697 lycopene epsilon cycl 97.5 0.0012 2.6E-08 68.8 12.0 56 230-287 192-248 (529)
156 PRK09077 L-aspartate oxidase; 97.4 0.0039 8.5E-08 65.8 16.0 58 230-287 138-207 (536)
157 COG4716 Myosin-crossreactive a 97.4 0.00035 7.7E-09 66.6 7.0 47 1-47 29-80 (587)
158 KOG2415|consensus 97.4 0.00061 1.3E-08 65.9 8.4 58 229-286 182-255 (621)
159 PRK12779 putative bifunctional 97.4 0.00015 3.3E-09 80.7 4.3 35 1-35 313-347 (944)
160 PLN02172 flavin-containing mon 97.3 0.00018 3.9E-09 74.0 4.3 35 1-35 17-51 (461)
161 TIGR01810 betA choline dehydro 97.3 0.0026 5.6E-08 67.2 12.5 54 234-288 197-256 (532)
162 PRK09897 hypothetical protein; 97.3 0.0046 1E-07 64.5 13.8 54 230-285 107-164 (534)
163 PF04820 Trp_halogenase: Trypt 97.2 0.0039 8.4E-08 64.2 12.7 57 230-287 154-211 (454)
164 PF13454 NAD_binding_9: FAD-NA 97.2 0.0039 8.4E-08 54.1 10.7 52 231-285 102-155 (156)
165 PRK13800 putative oxidoreducta 97.2 0.007 1.5E-07 67.9 15.2 57 230-287 139-205 (897)
166 PF06039 Mqo: Malate:quinone o 97.2 0.002 4.4E-08 64.0 9.5 64 229-295 180-250 (488)
167 TIGR03315 Se_ygfK putative sel 97.2 0.00031 6.7E-09 77.7 4.3 35 1-35 544-578 (1012)
168 PF12831 FAD_oxidored: FAD dep 97.1 0.00033 7E-09 71.7 3.7 54 239-294 99-156 (428)
169 TIGR00136 gidA glucose-inhibit 97.1 0.0058 1.2E-07 64.0 12.7 56 231-287 97-154 (617)
170 COG1252 Ndh NADH dehydrogenase 97.1 0.0011 2.5E-08 65.7 7.0 53 229-287 208-262 (405)
171 KOG1399|consensus 97.1 0.00042 9E-09 70.2 3.6 35 1-35 13-47 (448)
172 PRK05249 soluble pyridine nucl 97.1 0.00044 9.6E-09 71.7 3.8 56 230-287 216-272 (461)
173 PRK12831 putative oxidoreducta 97.1 0.00053 1.1E-08 70.8 4.3 34 1-34 147-180 (464)
174 TIGR02352 thiamin_ThiO glycine 97.0 0.0027 5.8E-08 62.8 9.1 62 229-294 136-198 (337)
175 PF01494 FAD_binding_3: FAD bi 97.0 0.00051 1.1E-08 68.4 3.8 64 230-294 111-179 (356)
176 PRK09853 putative selenate red 97.0 0.00067 1.4E-08 74.9 4.3 35 1-35 546-580 (1019)
177 PLN02661 Putative thiazole syn 97.0 0.00068 1.5E-08 65.9 3.8 33 1-33 99-132 (357)
178 PRK06115 dihydrolipoamide dehy 96.9 0.00067 1.4E-08 70.3 3.8 56 230-287 215-276 (466)
179 COG1053 SdhA Succinate dehydro 96.9 0.014 3E-07 61.3 13.4 57 231-287 139-202 (562)
180 PLN02852 ferredoxin-NADP+ redu 96.9 0.00088 1.9E-08 68.9 4.4 35 1-35 33-69 (491)
181 TIGR01424 gluta_reduc_2 glutat 96.9 0.00079 1.7E-08 69.4 4.1 56 230-287 207-263 (446)
182 COG0493 GltD NADPH-dependent g 96.9 0.00078 1.7E-08 68.6 3.9 35 1-35 130-164 (457)
183 PRK12769 putative oxidoreducta 96.9 0.00097 2.1E-08 72.2 4.5 35 1-35 334-368 (654)
184 PRK06753 hypothetical protein; 96.9 0.00086 1.9E-08 67.5 3.8 60 231-294 99-159 (373)
185 TIGR01350 lipoamide_DH dihydro 96.9 0.00091 2E-08 69.4 4.1 56 230-287 211-269 (461)
186 PRK12775 putative trifunctiona 96.8 0.00092 2E-08 75.2 4.2 35 1-35 437-471 (1006)
187 TIGR02028 ChlP geranylgeranyl 96.8 0.0011 2.4E-08 67.2 4.1 63 231-294 94-167 (398)
188 PRK06416 dihydrolipoamide dehy 96.8 0.001 2.3E-08 68.9 4.0 56 230-287 213-272 (462)
189 PF00743 FMO-like: Flavin-bind 96.8 0.00099 2.1E-08 69.6 3.8 34 1-34 8-41 (531)
190 COG2072 TrkA Predicted flavopr 96.8 0.0012 2.5E-08 67.7 4.0 34 1-34 15-49 (443)
191 PRK07236 hypothetical protein; 96.8 0.0011 2.5E-08 66.9 3.9 48 244-293 112-160 (386)
192 TIGR01292 TRX_reduct thioredox 96.8 0.0013 2.8E-08 63.9 4.1 32 1-33 7-38 (300)
193 PRK07251 pyridine nucleotide-d 96.8 0.0012 2.5E-08 68.1 4.0 56 230-287 198-253 (438)
194 TIGR01790 carotene-cycl lycope 96.8 0.0012 2.6E-08 66.9 4.0 56 230-287 85-141 (388)
195 PRK06116 glutathione reductase 96.8 0.00098 2.1E-08 68.9 3.4 57 230-287 208-265 (450)
196 TIGR01316 gltA glutamate synth 96.8 0.0014 3E-08 67.5 4.4 34 1-34 140-173 (449)
197 TIGR01421 gluta_reduc_1 glutat 96.7 0.0012 2.7E-08 68.0 3.9 57 230-287 207-265 (450)
198 PF07156 Prenylcys_lyase: Pren 96.7 0.036 7.9E-07 54.9 14.0 118 160-287 63-187 (368)
199 PRK06467 dihydrolipoamide dehy 96.7 0.0014 3E-08 68.1 4.1 55 230-287 215-274 (471)
200 PRK08010 pyridine nucleotide-d 96.7 0.0014 3.1E-08 67.5 4.1 55 230-287 199-254 (441)
201 PTZ00188 adrenodoxin reductase 96.7 0.0017 3.6E-08 66.0 4.4 35 1-35 46-81 (506)
202 PRK12809 putative oxidoreducta 96.7 0.0015 3.3E-08 70.4 4.4 35 1-35 317-351 (639)
203 PRK05976 dihydrolipoamide dehy 96.7 0.0015 3.2E-08 68.0 4.1 57 230-287 221-281 (472)
204 PRK12778 putative bifunctional 96.7 0.0016 3.4E-08 71.8 4.4 34 1-34 438-471 (752)
205 PRK09126 hypothetical protein; 96.7 0.0015 3.2E-08 66.3 3.9 62 231-294 111-174 (392)
206 PRK06475 salicylate hydroxylas 96.7 0.0015 3.3E-08 66.4 3.8 63 230-294 107-174 (400)
207 PRK07538 hypothetical protein; 96.7 0.0015 3.3E-08 66.6 3.9 64 231-294 103-172 (413)
208 KOG2853|consensus 96.6 0.044 9.6E-07 52.1 12.9 37 1-37 93-142 (509)
209 PRK08013 oxidoreductase; Provi 96.6 0.0015 3.4E-08 66.3 3.6 62 231-294 112-175 (400)
210 KOG2614|consensus 96.6 0.0016 3.5E-08 63.4 3.5 29 1-29 9-37 (420)
211 PRK05868 hypothetical protein; 96.6 0.0019 4.1E-08 64.9 4.1 61 231-294 106-167 (372)
212 TIGR03219 salicylate_mono sali 96.6 0.0018 3.8E-08 66.3 3.9 59 231-293 106-165 (414)
213 PRK08849 2-octaprenyl-3-methyl 96.6 0.0017 3.7E-08 65.6 3.7 62 231-294 111-174 (384)
214 TIGR02023 BchP-ChlP geranylger 96.6 0.002 4.3E-08 65.2 4.1 61 231-294 93-162 (388)
215 PRK12810 gltD glutamate syntha 96.6 0.0023 4.9E-08 66.5 4.4 34 1-34 150-183 (471)
216 PRK12814 putative NADPH-depend 96.6 0.0022 4.8E-08 69.2 4.4 34 1-34 200-233 (652)
217 TIGR02053 MerA mercuric reduct 96.5 0.0021 4.6E-08 66.7 4.1 56 230-287 207-266 (463)
218 PLN00093 geranylgeranyl diphos 96.5 0.002 4.3E-08 66.2 3.7 63 231-294 133-206 (450)
219 PRK07818 dihydrolipoamide dehy 96.5 0.0023 4.9E-08 66.5 4.1 56 230-287 213-273 (466)
220 PRK06292 dihydrolipoamide dehy 96.5 0.0022 4.7E-08 66.6 3.9 56 230-287 210-268 (460)
221 TIGR01318 gltD_gamma_fam gluta 96.5 0.0027 5.8E-08 65.8 4.3 35 1-35 148-182 (467)
222 PRK07494 2-octaprenyl-6-methox 96.5 0.0023 5E-08 64.8 3.7 63 230-294 111-174 (388)
223 PRK14694 putative mercuric red 96.5 0.0025 5.4E-08 66.2 4.0 56 230-287 218-273 (468)
224 PRK06617 2-octaprenyl-6-methox 96.5 0.0022 4.7E-08 64.6 3.4 62 230-294 104-167 (374)
225 PRK11749 dihydropyrimidine deh 96.4 0.0029 6.3E-08 65.5 4.3 34 1-34 147-180 (457)
226 TIGR03143 AhpF_homolog putativ 96.4 0.0029 6.2E-08 67.1 4.4 34 1-35 11-44 (555)
227 PRK14727 putative mercuric red 96.4 0.0024 5.2E-08 66.5 3.7 57 229-287 227-283 (479)
228 TIGR03378 glycerol3P_GlpB glyc 96.4 0.012 2.5E-07 59.1 7.9 57 230-287 263-322 (419)
229 PRK13748 putative mercuric red 96.4 0.0027 5.9E-08 67.6 3.6 57 229-287 309-365 (561)
230 PRK06370 mercuric reductase; V 96.3 0.0033 7.1E-08 65.2 4.1 57 230-287 212-271 (463)
231 PRK06567 putative bifunctional 96.3 0.0031 6.8E-08 69.0 3.9 31 1-31 390-420 (1028)
232 KOG0399|consensus 96.3 0.0032 6.9E-08 68.1 3.8 35 1-35 1792-1826(2142)
233 TIGR01789 lycopene_cycl lycope 96.3 0.0036 7.8E-08 62.7 3.9 32 1-32 6-39 (370)
234 PTZ00058 glutathione reductase 96.3 0.0036 7.8E-08 65.9 3.8 57 230-287 278-336 (561)
235 KOG2665|consensus 96.3 0.039 8.5E-07 51.9 10.0 59 229-287 195-257 (453)
236 PRK06327 dihydrolipoamide dehy 96.2 0.0039 8.5E-08 64.8 4.0 57 229-287 223-284 (475)
237 TIGR01317 GOGAT_sm_gam glutama 96.2 0.0043 9.4E-08 64.5 4.3 35 1-35 150-184 (485)
238 PRK06126 hypothetical protein; 96.2 0.0039 8.5E-08 66.1 4.0 63 231-294 127-195 (545)
239 PRK12771 putative glutamate sy 96.2 0.0045 9.8E-08 65.8 4.4 34 1-34 144-177 (564)
240 PTZ00052 thioredoxin reductase 96.2 0.0042 9E-08 64.9 4.0 56 230-287 222-278 (499)
241 PLN02927 antheraxanthin epoxid 96.2 0.0036 7.8E-08 66.6 3.5 59 231-293 195-254 (668)
242 TIGR00137 gid_trmFO tRNA:m(5)U 96.2 0.0044 9.5E-08 62.4 3.8 31 1-31 7-37 (433)
243 PRK05335 tRNA (uracil-5-)-meth 96.2 0.0048 1E-07 61.7 3.9 30 1-30 9-38 (436)
244 PRK10262 thioredoxin reductase 96.2 0.0047 1E-07 60.7 3.9 34 1-35 13-46 (321)
245 PLN02985 squalene monooxygenas 96.1 0.0043 9.3E-08 64.9 3.6 62 231-294 148-215 (514)
246 PRK05732 2-octaprenyl-6-methox 96.1 0.0042 9.1E-08 63.0 3.3 62 231-294 113-176 (395)
247 TIGR01372 soxA sarcosine oxida 96.1 0.0054 1.2E-07 69.4 4.4 54 232-287 353-411 (985)
248 PRK11445 putative oxidoreducta 96.0 0.0052 1.1E-07 61.2 3.6 57 235-294 104-164 (351)
249 TIGR01989 COQ6 Ubiquinone bios 96.0 0.0048 1E-07 63.5 3.4 65 230-294 117-190 (437)
250 PTZ00367 squalene epoxidase; P 96.0 0.0054 1.2E-07 64.6 3.5 27 1-27 40-66 (567)
251 PLN02463 lycopene beta cyclase 96.0 0.006 1.3E-07 62.5 3.6 55 230-287 114-169 (447)
252 PLN02507 glutathione reductase 95.9 0.0074 1.6E-07 63.0 4.2 56 230-287 244-300 (499)
253 COG0492 TrxB Thioredoxin reduc 95.9 0.008 1.7E-07 58.0 4.0 33 1-34 10-43 (305)
254 PRK12770 putative glutamate sy 95.9 0.0088 1.9E-07 59.6 4.4 34 1-34 25-58 (352)
255 TIGR03862 flavo_PP4765 unchara 95.8 0.04 8.7E-07 54.7 8.7 63 220-287 76-141 (376)
256 PRK13984 putative oxidoreducta 95.7 0.0097 2.1E-07 63.9 4.4 34 1-34 290-323 (604)
257 TIGR01423 trypano_reduc trypan 95.7 0.0099 2.1E-07 61.8 4.0 57 230-287 231-288 (486)
258 PRK06912 acoL dihydrolipoamide 95.7 0.01 2.2E-07 61.5 4.0 56 230-287 211-268 (458)
259 COG1249 Lpd Pyruvate/2-oxoglut 95.6 0.011 2.5E-07 60.2 4.1 57 229-287 213-272 (454)
260 PLN02546 glutathione reductase 95.6 0.011 2.3E-07 62.4 4.0 57 230-287 293-350 (558)
261 PRK05192 tRNA uridine 5-carbox 95.6 0.011 2.3E-07 62.1 3.8 55 231-287 101-157 (618)
262 PRK15317 alkyl hydroperoxide r 95.6 0.011 2.5E-07 62.1 4.1 32 1-34 218-249 (517)
263 PF00070 Pyr_redox: Pyridine n 95.5 0.019 4E-07 43.4 4.0 30 1-30 6-35 (80)
264 PRK07845 flavoprotein disulfid 95.5 0.013 2.9E-07 60.7 4.0 56 230-287 218-274 (466)
265 PF05834 Lycopene_cycl: Lycope 95.5 0.011 2.4E-07 59.4 3.3 55 230-287 87-142 (374)
266 TIGR03140 AhpF alkyl hydropero 95.4 0.014 3E-07 61.4 4.0 31 1-33 219-249 (515)
267 PRK08255 salicylyl-CoA 5-hydro 95.4 0.013 2.9E-07 64.5 3.8 28 1-28 7-36 (765)
268 PF13738 Pyr_redox_3: Pyridine 95.3 0.038 8.2E-07 50.1 6.1 34 1-34 4-38 (203)
269 PF07992 Pyr_redox_2: Pyridine 95.3 0.019 4E-07 52.0 3.8 28 1-28 6-33 (201)
270 PTZ00153 lipoamide dehydrogena 95.1 0.019 4.1E-07 61.6 4.0 34 1-34 123-157 (659)
271 PRK08294 phenol 2-monooxygenas 95.1 0.018 3.9E-07 62.0 3.6 64 231-294 142-217 (634)
272 TIGR01438 TGR thioredoxin and 94.8 0.027 5.8E-07 58.7 3.9 56 230-287 220-279 (484)
273 KOG1298|consensus 94.7 0.024 5.2E-07 54.8 3.0 27 1-27 52-78 (509)
274 PF01134 GIDA: Glucose inhibit 94.4 0.031 6.8E-07 55.4 3.2 53 231-285 96-150 (392)
275 PRK06996 hypothetical protein; 94.3 0.036 7.7E-07 56.3 3.5 54 230-285 115-172 (398)
276 KOG1335|consensus 94.0 0.052 1.1E-06 52.5 3.5 57 230-287 252-314 (506)
277 PRK02106 choline dehydrogenase 93.9 0.049 1.1E-06 58.0 3.7 47 242-289 213-264 (560)
278 TIGR01816 sdhA_forward succina 93.7 0.24 5.2E-06 52.7 8.3 57 230-287 119-181 (565)
279 KOG2852|consensus 93.6 0.024 5.2E-07 52.6 0.5 62 230-295 147-214 (380)
280 KOG0042|consensus 93.6 0.23 5E-06 50.4 7.2 57 231-287 225-287 (680)
281 KOG1336|consensus 93.5 0.18 3.9E-06 50.5 6.4 58 230-287 255-313 (478)
282 PF00070 Pyr_redox: Pyridine n 93.3 0.3 6.4E-06 36.7 6.0 41 229-271 39-80 (80)
283 PRK05675 sdhA succinate dehydr 93.0 0.34 7.3E-06 51.6 8.1 59 229-287 125-189 (570)
284 KOG2960|consensus 92.7 0.024 5.3E-07 50.0 -0.8 34 1-34 83-118 (328)
285 PRK06116 glutathione reductase 92.6 0.42 9.1E-06 49.4 8.0 33 1-34 11-43 (450)
286 KOG1800|consensus 92.5 0.14 3.1E-06 49.6 4.0 35 1-35 27-63 (468)
287 COG0446 HcaD Uncharacterized N 92.4 0.11 2.5E-06 52.7 3.6 33 1-33 143-175 (415)
288 TIGR03378 glycerol3P_GlpB glyc 92.4 0.12 2.7E-06 51.9 3.6 27 1-27 7-33 (419)
289 PF01134 GIDA: Glucose inhibit 92.3 0.47 1E-05 47.2 7.6 29 1-29 6-35 (392)
290 PRK09564 coenzyme A disulfide 92.1 0.13 2.8E-06 53.1 3.6 55 230-286 191-245 (444)
291 COG3075 GlpB Anaerobic glycero 92.0 0.14 3E-06 48.7 3.2 56 231-287 259-317 (421)
292 PRK07846 mycothione reductase; 91.6 0.15 3.2E-06 52.7 3.3 54 231-287 208-262 (451)
293 TIGR03452 mycothione_red mycot 91.2 0.18 4E-06 52.1 3.4 54 231-287 211-265 (452)
294 TIGR01423 trypano_reduc trypan 91.1 0.77 1.7E-05 47.9 8.0 34 1-34 10-52 (486)
295 COG1206 Gid NAD(FAD)-utilizing 91.0 0.18 3.8E-06 48.0 2.8 30 1-30 10-39 (439)
296 PRK04965 NADH:flavorubredoxin 90.6 0.9 1.9E-05 45.7 7.8 55 231-287 184-239 (377)
297 PRK14989 nitrite reductase sub 90.5 0.9 2E-05 50.6 8.2 56 231-286 188-244 (847)
298 COG2303 BetA Choline dehydroge 90.5 0.19 4.1E-06 53.1 2.8 57 231-288 203-267 (542)
299 PRK13512 coenzyme A disulfide 90.5 0.26 5.6E-06 50.7 3.8 52 230-287 189-241 (438)
300 PRK09754 phenylpropionate diox 90.5 0.27 5.9E-06 49.9 3.9 54 231-287 187-241 (396)
301 KOG0405|consensus 90.3 0.28 6.1E-06 47.0 3.4 60 227-286 226-286 (478)
302 TIGR01350 lipoamide_DH dihydro 90.2 1.1 2.4E-05 46.5 8.2 34 1-35 8-41 (461)
303 TIGR01421 gluta_reduc_1 glutat 89.9 1.2 2.6E-05 46.0 8.2 33 1-34 9-41 (450)
304 PLN02507 glutathione reductase 89.8 1.1 2.4E-05 46.9 7.8 34 1-34 32-74 (499)
305 PRK09126 hypothetical protein; 89.5 1.2 2.7E-05 44.9 7.9 29 1-29 10-38 (392)
306 PRK09564 coenzyme A disulfide 89.5 1.3 2.9E-05 45.6 8.2 30 1-30 7-38 (444)
307 PTZ00318 NADH dehydrogenase-li 89.1 0.96 2.1E-05 46.3 6.7 51 230-286 228-279 (424)
308 PRK08013 oxidoreductase; Provi 89.1 1.3 2.8E-05 45.0 7.6 29 1-29 10-38 (400)
309 PRK02705 murD UDP-N-acetylmura 89.1 0.36 7.8E-06 50.1 3.6 29 1-29 7-35 (459)
310 PRK05249 soluble pyridine nucl 89.0 1.4 2.9E-05 45.8 7.8 35 1-35 12-46 (461)
311 TIGR01292 TRX_reduct thioredox 89.0 1.4 3.1E-05 42.4 7.6 55 230-287 57-112 (300)
312 PRK06416 dihydrolipoamide dehy 89.0 1.5 3.3E-05 45.4 8.2 34 1-35 11-44 (462)
313 PRK07251 pyridine nucleotide-d 88.8 1.5 3.3E-05 45.0 8.0 34 1-34 10-44 (438)
314 PF01210 NAD_Gly3P_dh_N: NAD-d 88.7 0.42 9.1E-06 41.3 3.2 27 1-27 6-32 (157)
315 TIGR01424 gluta_reduc_2 glutat 88.7 1.5 3.2E-05 45.3 7.8 33 1-34 9-41 (446)
316 PRK05732 2-octaprenyl-6-methox 88.7 1.6 3.4E-05 44.1 7.9 27 1-27 10-39 (395)
317 PRK07494 2-octaprenyl-6-methox 88.5 1.4 3E-05 44.4 7.4 29 1-29 14-42 (388)
318 PF01494 FAD_binding_3: FAD bi 88.3 1.9 4E-05 42.6 8.1 29 1-29 8-36 (356)
319 TIGR02374 nitri_red_nirB nitri 88.3 1.5 3.2E-05 48.8 7.9 54 231-286 183-237 (785)
320 PRK07845 flavoprotein disulfid 88.1 1.5 3.3E-05 45.4 7.5 33 1-34 8-40 (466)
321 PRK05976 dihydrolipoamide dehy 88.0 2.2 4.7E-05 44.4 8.6 34 1-35 11-44 (472)
322 PF03721 UDPG_MGDP_dh_N: UDP-g 87.5 0.54 1.2E-05 41.9 3.2 28 1-28 7-34 (185)
323 PRK09754 phenylpropionate diox 87.3 2.2 4.7E-05 43.2 7.9 29 1-29 10-40 (396)
324 TIGR01790 carotene-cycl lycope 87.1 2 4.4E-05 43.2 7.6 31 1-31 6-36 (388)
325 PRK05192 tRNA uridine 5-carbox 87.0 1.7 3.6E-05 46.1 6.9 31 1-31 11-42 (618)
326 COG1249 Lpd Pyruvate/2-oxoglut 87.0 2.2 4.8E-05 43.8 7.6 35 1-35 11-45 (454)
327 PRK07818 dihydrolipoamide dehy 87.0 2.8 6.1E-05 43.5 8.7 33 1-34 11-43 (466)
328 PTZ00058 glutathione reductase 86.9 2.9 6.3E-05 44.3 8.7 33 1-34 55-87 (561)
329 PRK14694 putative mercuric red 86.8 2.4 5.1E-05 44.1 8.0 33 1-34 13-45 (468)
330 PRK08849 2-octaprenyl-3-methyl 86.8 1.9 4E-05 43.5 7.1 27 1-27 10-36 (384)
331 TIGR03140 AhpF alkyl hydropero 86.8 2.1 4.7E-05 45.0 7.7 57 229-287 266-323 (515)
332 PRK06370 mercuric reductase; V 86.8 2.4 5.1E-05 44.0 8.0 33 1-34 12-44 (463)
333 PTZ00318 NADH dehydrogenase-li 86.7 0.53 1.1E-05 48.2 3.1 28 1-28 17-44 (424)
334 PRK08010 pyridine nucleotide-d 86.7 2.2 4.8E-05 43.9 7.7 35 1-35 10-45 (441)
335 PLN02785 Protein HOTHEAD 86.5 0.62 1.3E-05 49.7 3.5 55 234-288 224-291 (587)
336 PLN02463 lycopene beta cyclase 86.4 2.3 4.9E-05 43.8 7.5 27 1-27 35-61 (447)
337 PRK05868 hypothetical protein; 86.3 2.2 4.8E-05 42.8 7.3 29 1-29 8-36 (372)
338 PRK15317 alkyl hydroperoxide r 86.3 2.5 5.4E-05 44.6 7.9 57 229-287 265-322 (517)
339 TIGR03219 salicylate_mono sali 86.2 1.7 3.7E-05 44.3 6.5 30 1-30 7-37 (414)
340 PRK10262 thioredoxin reductase 86.0 2 4.4E-05 42.0 6.7 56 231-287 186-248 (321)
341 PRK01438 murD UDP-N-acetylmura 86.0 0.71 1.5E-05 48.2 3.6 28 1-28 23-50 (480)
342 TIGR03385 CoA_CoA_reduc CoA-di 85.8 2.3 5E-05 43.6 7.2 53 230-286 179-232 (427)
343 PRK14727 putative mercuric red 85.5 2.6 5.7E-05 43.9 7.6 34 1-34 23-56 (479)
344 PRK06126 hypothetical protein; 85.5 3.4 7.3E-05 43.9 8.5 28 1-28 14-41 (545)
345 PRK06617 2-octaprenyl-6-methox 85.0 3.3 7.1E-05 41.6 7.8 28 1-28 8-35 (374)
346 PF02737 3HCDH_N: 3-hydroxyacy 84.8 1 2.2E-05 40.0 3.5 28 1-28 6-33 (180)
347 PRK06912 acoL dihydrolipoamide 84.6 3.6 7.9E-05 42.6 8.1 33 1-34 7-39 (458)
348 TIGR03169 Nterm_to_SelD pyridi 84.4 2.4 5.2E-05 42.4 6.5 52 230-287 191-243 (364)
349 KOG1346|consensus 84.4 1.1 2.3E-05 44.2 3.6 61 232-295 395-456 (659)
350 PRK06327 dihydrolipoamide dehy 84.3 4.1 8.8E-05 42.5 8.3 34 1-34 11-50 (475)
351 COG0029 NadB Aspartate oxidase 84.2 0.72 1.6E-05 46.6 2.5 56 230-286 133-195 (518)
352 TIGR01989 COQ6 Ubiquinone bios 83.9 3.8 8.2E-05 42.2 7.8 28 1-28 7-38 (437)
353 PRK07236 hypothetical protein; 83.6 3.5 7.6E-05 41.5 7.4 28 1-28 13-40 (386)
354 PRK13748 putative mercuric red 83.6 3.7 8E-05 43.8 7.9 33 1-34 105-137 (561)
355 PTZ00052 thioredoxin reductase 83.6 4 8.6E-05 42.8 7.9 34 1-34 12-53 (499)
356 PRK06753 hypothetical protein; 83.5 3.4 7.4E-05 41.3 7.2 29 1-29 7-35 (373)
357 TIGR01438 TGR thioredoxin and 83.2 3.9 8.4E-05 42.7 7.6 34 1-34 9-50 (484)
358 TIGR03169 Nterm_to_SelD pyridi 83.2 0.98 2.1E-05 45.2 3.1 28 1-28 6-36 (364)
359 PRK13512 coenzyme A disulfide 83.1 3.1 6.7E-05 42.8 6.8 30 1-30 8-39 (438)
360 PRK06475 salicylate hydroxylas 83.0 5.8 0.00012 40.2 8.7 29 1-29 9-37 (400)
361 TIGR02053 MerA mercuric reduct 82.9 4.7 0.0001 41.8 8.1 33 1-34 7-39 (463)
362 PLN02546 glutathione reductase 82.5 5.1 0.00011 42.5 8.2 34 1-34 86-128 (558)
363 COG1251 NirB NAD(P)H-nitrite r 81.8 1.4 3E-05 46.9 3.6 51 234-286 191-242 (793)
364 PF02558 ApbA: Ketopantoate re 81.6 1.7 3.6E-05 37.2 3.5 27 1-27 5-31 (151)
365 PLN02661 Putative thiazole syn 81.2 8.1 0.00018 38.1 8.4 58 228-286 170-243 (357)
366 KOG4716|consensus 80.9 2.1 4.5E-05 41.1 4.0 66 226-292 234-305 (503)
367 PLN02172 flavin-containing mon 80.9 5.5 0.00012 41.2 7.6 56 230-287 111-173 (461)
368 PRK06115 dihydrolipoamide dehy 80.9 6.8 0.00015 40.7 8.4 34 1-34 10-43 (466)
369 TIGR01316 gltA glutamate synth 80.8 5.4 0.00012 41.2 7.6 51 236-286 315-386 (449)
370 KOG4405|consensus 80.8 7.7 0.00017 38.4 7.8 60 222-282 278-340 (547)
371 PRK06129 3-hydroxyacyl-CoA deh 80.7 1.5 3.2E-05 42.8 3.2 28 1-28 9-36 (308)
372 COG1004 Ugd Predicted UDP-gluc 80.6 1.5 3.2E-05 43.3 3.1 27 1-27 7-33 (414)
373 PRK02106 choline dehydrogenase 79.8 2.9 6.3E-05 44.6 5.4 28 1-28 12-40 (560)
374 PRK06996 hypothetical protein; 79.8 5.8 0.00012 40.2 7.3 28 1-28 18-49 (398)
375 PF12831 FAD_oxidored: FAD dep 78.9 0.63 1.4E-05 47.7 0.0 34 1-34 6-39 (428)
376 PRK12810 gltD glutamate syntha 78.7 5.8 0.00013 41.2 7.1 49 237-286 336-399 (471)
377 PRK11445 putative oxidoreducta 78.5 9.4 0.0002 37.9 8.3 28 1-29 8-35 (351)
378 PRK14106 murD UDP-N-acetylmura 78.1 2.1 4.6E-05 44.2 3.6 27 1-27 12-38 (450)
379 PRK11749 dihydropyrimidine deh 77.9 7.5 0.00016 40.2 7.6 50 236-286 317-386 (457)
380 KOG2852|consensus 77.9 5.1 0.00011 37.8 5.5 34 1-34 17-56 (380)
381 PRK04965 NADH:flavorubredoxin 77.2 2.5 5.4E-05 42.5 3.8 30 1-30 148-177 (377)
382 PRK09260 3-hydroxybutyryl-CoA 77.0 2.2 4.8E-05 41.1 3.2 28 1-28 8-35 (288)
383 COG4529 Uncharacterized protei 76.7 2.7 5.9E-05 42.6 3.7 34 1-34 8-44 (474)
384 PRK07846 mycothione reductase; 76.7 6.9 0.00015 40.4 6.9 31 1-34 8-38 (451)
385 PRK08293 3-hydroxybutyryl-CoA 76.5 2.4 5.2E-05 40.8 3.3 27 1-27 10-36 (287)
386 COG0446 HcaD Uncharacterized N 76.2 8.1 0.00018 39.0 7.3 57 230-287 178-237 (415)
387 TIGR02374 nitri_red_nirB nitri 76.1 3.8 8.2E-05 45.6 5.1 46 238-287 62-108 (785)
388 TIGR03452 mycothione_red mycot 75.5 9.9 0.00021 39.3 7.7 32 1-35 9-40 (452)
389 PRK07819 3-hydroxybutyryl-CoA 75.5 2.5 5.4E-05 40.7 3.0 28 1-28 12-39 (286)
390 PRK07066 3-hydroxybutyryl-CoA 74.8 2.9 6.2E-05 40.8 3.3 27 1-27 14-40 (321)
391 KOG1335|consensus 74.6 13 0.00028 36.7 7.4 34 1-34 46-79 (506)
392 PF05834 Lycopene_cycl: Lycope 74.1 11 0.00024 37.8 7.4 29 1-29 6-36 (374)
393 PRK06467 dihydrolipoamide dehy 74.0 3.5 7.6E-05 42.9 3.9 30 1-30 181-210 (471)
394 PRK07538 hypothetical protein; 73.4 16 0.00034 37.3 8.5 29 1-29 7-35 (413)
395 PRK12831 putative oxidoreducta 73.2 10 0.00023 39.2 7.2 48 239-286 327-395 (464)
396 PRK07530 3-hydroxybutyryl-CoA 73.1 3.6 7.8E-05 39.7 3.5 27 1-27 11-37 (292)
397 PRK11064 wecC UDP-N-acetyl-D-m 73.0 3.1 6.6E-05 42.4 3.1 28 1-28 10-37 (415)
398 PF07992 Pyr_redox_2: Pyridine 72.7 4.7 0.0001 36.1 4.0 51 235-286 63-121 (201)
399 PRK06035 3-hydroxyacyl-CoA deh 72.3 3.3 7.2E-05 39.9 3.1 28 1-28 10-37 (291)
400 PRK01710 murD UDP-N-acetylmura 72.0 3.7 8E-05 42.5 3.5 27 1-27 21-47 (458)
401 PRK06292 dihydrolipoamide dehy 71.9 4.3 9.4E-05 42.0 4.1 31 1-31 176-206 (460)
402 KOG0404|consensus 71.4 6.6 0.00014 35.5 4.4 64 224-292 63-127 (322)
403 PRK04148 hypothetical protein; 71.3 3.2 7E-05 34.5 2.3 27 1-28 24-50 (134)
404 COG3075 GlpB Anaerobic glycero 71.1 8 0.00017 37.3 5.1 27 1-27 9-35 (421)
405 COG0492 TrxB Thioredoxin reduc 71.0 15 0.00032 35.7 7.1 54 230-287 61-115 (305)
406 TIGR03385 CoA_CoA_reduc CoA-di 70.9 11 0.00024 38.6 6.7 48 238-287 52-103 (427)
407 PRK06522 2-dehydropantoate 2-r 70.7 4.1 8.9E-05 39.4 3.4 27 1-27 7-33 (304)
408 TIGR01318 gltD_gamma_fam gluta 70.5 15 0.00033 38.1 7.7 50 237-286 327-397 (467)
409 TIGR02023 BchP-ChlP geranylger 70.4 20 0.00044 36.1 8.4 26 1-26 7-32 (388)
410 TIGR03026 NDP-sugDHase nucleot 69.5 4 8.8E-05 41.5 3.1 28 1-28 7-34 (411)
411 PRK04308 murD UDP-N-acetylmura 69.3 5 0.00011 41.3 3.8 29 1-29 12-40 (445)
412 COG0569 TrkA K+ transport syst 69.2 4.8 0.0001 37.1 3.2 28 1-28 7-34 (225)
413 PF01262 AlaDh_PNT_C: Alanine 69.2 5.5 0.00012 34.8 3.5 27 1-27 27-53 (168)
414 PRK12921 2-dehydropantoate 2-r 69.2 4.8 0.0001 39.0 3.4 25 1-25 7-31 (305)
415 COG3486 IucD Lysine/ornithine 68.7 16 0.00036 36.3 6.8 58 224-285 95-155 (436)
416 COG1635 THI4 Ribulose 1,5-bisp 68.4 26 0.00056 32.0 7.3 65 224-289 104-180 (262)
417 PRK05808 3-hydroxybutyryl-CoA 68.3 4.6 0.0001 38.7 3.1 28 1-28 10-37 (282)
418 PRK02472 murD UDP-N-acetylmura 68.3 4.8 0.0001 41.5 3.4 27 1-27 12-38 (447)
419 PLN02927 antheraxanthin epoxid 67.7 11 0.00025 40.6 6.1 27 1-27 88-114 (668)
420 KOG1371|consensus 67.6 4.5 9.8E-05 38.8 2.7 27 1-27 10-36 (343)
421 PRK12769 putative oxidoreducta 67.3 15 0.00032 40.0 7.1 33 236-268 512-544 (654)
422 PRK14989 nitrite reductase sub 66.9 9.1 0.0002 42.9 5.4 47 237-287 66-113 (847)
423 PLN02985 squalene monooxygenas 66.7 25 0.00054 37.0 8.4 28 1-28 50-77 (514)
424 PRK08229 2-dehydropantoate 2-r 66.7 5.6 0.00012 39.3 3.4 26 1-26 9-34 (341)
425 PLN02785 Protein HOTHEAD 66.6 10 0.00022 40.5 5.6 27 1-28 62-88 (587)
426 COG1251 NirB NAD(P)H-nitrite r 66.5 10 0.00023 40.6 5.3 56 228-287 57-113 (793)
427 COG1087 GalE UDP-glucose 4-epi 66.1 6.2 0.00013 37.5 3.3 27 1-27 8-34 (329)
428 PRK06249 2-dehydropantoate 2-r 65.9 6.4 0.00014 38.4 3.6 27 1-27 12-38 (313)
429 PRK03369 murD UDP-N-acetylmura 65.2 6.2 0.00013 41.2 3.5 27 1-27 19-45 (488)
430 COG0771 MurD UDP-N-acetylmuram 65.1 6.2 0.00013 40.2 3.3 29 1-29 14-42 (448)
431 PRK06130 3-hydroxybutyryl-CoA 64.2 6.5 0.00014 38.3 3.3 27 1-27 11-37 (311)
432 KOG1238|consensus 64.2 5.6 0.00012 41.9 2.9 58 231-288 253-319 (623)
433 PF03446 NAD_binding_2: NAD bi 63.8 8 0.00017 33.5 3.4 27 1-27 8-34 (163)
434 KOG0404|consensus 63.8 11 0.00023 34.2 4.1 37 1-37 15-55 (322)
435 PRK05708 2-dehydropantoate 2-r 63.3 7.5 0.00016 37.8 3.5 26 1-26 9-34 (305)
436 TIGR01372 soxA sarcosine oxida 63.0 22 0.00049 40.7 7.7 35 1-35 170-204 (985)
437 PRK14618 NAD(P)H-dependent gly 62.9 7.6 0.00017 38.1 3.5 27 1-27 11-37 (328)
438 PRK04690 murD UDP-N-acetylmura 62.5 7.2 0.00016 40.5 3.4 28 1-28 15-42 (468)
439 PRK02006 murD UDP-N-acetylmura 62.4 7.1 0.00015 40.9 3.4 27 1-27 14-40 (498)
440 PRK04176 ribulose-1,5-biphosph 62.3 5.9 0.00013 37.4 2.5 33 1-33 32-64 (257)
441 PTZ00153 lipoamide dehydrogena 62.1 8 0.00017 41.9 3.7 31 1-31 319-349 (659)
442 PLN02545 3-hydroxybutyryl-CoA 62.1 8.3 0.00018 37.2 3.5 27 1-27 11-37 (295)
443 COG3634 AhpF Alkyl hydroperoxi 61.6 4.1 8.9E-05 39.4 1.2 30 1-32 218-247 (520)
444 COG2072 TrkA Predicted flavopr 61.2 27 0.00058 36.0 7.2 56 232-287 84-144 (443)
445 PRK15057 UDP-glucose 6-dehydro 60.9 7.3 0.00016 39.3 3.0 27 1-28 7-33 (388)
446 COG0445 GidA Flavin-dependent 60.9 8 0.00017 40.0 3.2 52 234-286 104-157 (621)
447 TIGR00292 thiazole biosynthesi 60.4 6.6 0.00014 37.0 2.4 33 1-33 28-60 (254)
448 PRK07531 bifunctional 3-hydrox 60.3 7.9 0.00017 40.5 3.2 27 1-27 11-37 (495)
449 PRK08268 3-hydroxy-acyl-CoA de 60.1 7.8 0.00017 40.6 3.1 28 1-28 14-41 (507)
450 TIGR02279 PaaC-3OHAcCoADH 3-hy 59.6 8 0.00017 40.4 3.1 28 1-28 12-39 (503)
451 TIGR00136 gidA glucose-inhibit 59.2 13 0.00028 39.6 4.5 33 1-33 7-39 (617)
452 PRK05675 sdhA succinate dehydr 58.9 6.8 0.00015 41.8 2.5 26 7-32 1-26 (570)
453 PRK14619 NAD(P)H-dependent gly 58.9 10 0.00022 36.9 3.5 27 1-27 11-37 (308)
454 PRK03803 murD UDP-N-acetylmura 58.8 9.1 0.0002 39.5 3.4 27 1-27 13-39 (448)
455 COG0445 GidA Flavin-dependent 58.7 7 0.00015 40.4 2.4 34 1-34 11-44 (621)
456 COG2303 BetA Choline dehydroge 58.5 11 0.00025 39.8 4.1 27 1-27 14-40 (542)
457 PRK00421 murC UDP-N-acetylmura 58.1 8.2 0.00018 40.0 2.9 28 1-28 14-42 (461)
458 PRK14620 NAD(P)H-dependent gly 58.0 10 0.00022 37.2 3.5 27 1-27 7-33 (326)
459 PF03853 YjeF_N: YjeF-related 57.8 9.9 0.00021 33.2 3.0 19 4-22 39-57 (169)
460 cd01080 NAD_bind_m-THF_DH_Cycl 57.6 12 0.00026 32.7 3.4 26 1-26 51-77 (168)
461 PRK00141 murD UDP-N-acetylmura 57.5 10 0.00022 39.4 3.5 27 1-27 22-48 (473)
462 TIGR01763 MalateDH_bact malate 57.5 12 0.00026 36.3 3.8 27 1-27 8-35 (305)
463 PRK00094 gpsA NAD(P)H-dependen 57.5 11 0.00023 36.9 3.5 27 1-27 8-34 (325)
464 PRK08294 phenol 2-monooxygenas 57.4 57 0.0012 35.4 9.3 28 1-28 39-67 (634)
465 cd05292 LDH_2 A subgroup of L- 57.3 11 0.00024 36.6 3.5 27 1-27 7-35 (308)
466 TIGR03143 AhpF_homolog putativ 57.2 9.8 0.00021 40.5 3.4 29 1-29 150-178 (555)
467 KOG1336|consensus 57.0 14 0.00031 37.4 4.2 49 233-285 130-179 (478)
468 PRK13984 putative oxidoreducta 56.9 25 0.00055 37.8 6.5 46 240-286 472-537 (604)
469 PRK01390 murD UDP-N-acetylmura 56.5 9.6 0.00021 39.5 3.1 26 1-26 16-41 (460)
470 PLN02353 probable UDP-glucose 56.2 10 0.00022 39.3 3.2 28 1-28 8-37 (473)
471 TIGR00137 gid_trmFO tRNA:m(5)U 56.1 12 0.00025 38.2 3.5 27 488-514 328-355 (433)
472 PRK12778 putative bifunctional 55.4 32 0.00069 38.2 7.1 49 238-286 616-685 (752)
473 PRK03806 murD UDP-N-acetylmura 55.0 12 0.00027 38.4 3.6 28 1-28 13-40 (438)
474 cd01075 NAD_bind_Leu_Phe_Val_D 54.6 14 0.00031 33.2 3.6 27 1-27 35-61 (200)
475 COG3573 Predicted oxidoreducta 54.2 5.5 0.00012 38.3 0.8 54 230-284 153-225 (552)
476 PRK12770 putative glutamate sy 54.1 13 0.00028 36.9 3.5 27 1-27 179-206 (352)
477 PF13434 K_oxygenase: L-lysine 53.1 9.7 0.00021 37.6 2.4 28 1-28 9-37 (341)
478 COG0029 NadB Aspartate oxidase 53.0 29 0.00063 35.6 5.6 28 1-29 14-41 (518)
479 KOG0405|consensus 53.0 38 0.00082 33.1 6.0 35 1-35 27-61 (478)
480 PF13478 XdhC_C: XdhC Rossmann 52.9 15 0.00031 30.9 3.0 28 1-28 5-32 (136)
481 TIGR01087 murD UDP-N-acetylmur 52.9 12 0.00027 38.3 3.2 28 1-28 6-33 (433)
482 PF01946 Thi4: Thi4 family; PD 52.7 47 0.001 30.3 6.3 63 224-287 91-165 (230)
483 PRK12809 putative oxidoreducta 52.7 38 0.00083 36.7 7.1 46 240-285 499-565 (639)
484 TIGR02028 ChlP geranylgeranyl 52.1 68 0.0015 32.4 8.4 30 1-30 7-36 (398)
485 TIGR01505 tartro_sem_red 2-hyd 51.9 12 0.00027 35.9 2.9 27 1-27 6-32 (291)
486 TIGR01915 npdG NADPH-dependent 51.8 15 0.00033 33.6 3.3 26 2-27 9-34 (219)
487 TIGR00518 alaDH alanine dehydr 51.7 15 0.00033 36.7 3.5 27 1-27 174-200 (370)
488 PRK01368 murD UDP-N-acetylmura 51.7 12 0.00027 38.6 2.9 26 1-27 13-38 (454)
489 TIGR01082 murC UDP-N-acetylmur 51.6 13 0.00027 38.5 3.0 29 1-29 6-35 (448)
490 PRK11730 fadB multifunctional 51.1 13 0.00027 41.0 3.1 28 1-28 320-347 (715)
491 PF00743 FMO-like: Flavin-bind 51.1 38 0.00081 35.8 6.4 58 230-287 84-150 (531)
492 TIGR01692 HIBADH 3-hydroxyisob 50.7 15 0.00033 35.3 3.2 27 1-27 3-29 (288)
493 PRK12775 putative trifunctiona 50.4 43 0.00092 38.5 7.2 49 238-286 617-685 (1006)
494 PF01488 Shikimate_DH: Shikima 50.0 22 0.00049 29.6 3.8 27 1-27 19-46 (135)
495 PF13434 K_oxygenase: L-lysine 49.7 25 0.00054 34.7 4.6 47 239-285 104-157 (341)
496 PRK15461 NADH-dependent gamma- 49.4 16 0.00034 35.3 3.1 27 1-27 8-34 (296)
497 PLN00093 geranylgeranyl diphos 49.1 84 0.0018 32.4 8.6 27 1-27 46-72 (450)
498 TIGR02437 FadB fatty oxidation 49.0 16 0.00035 40.1 3.5 28 1-28 320-347 (714)
499 COG0686 Ald Alanine dehydrogen 48.8 14 0.00031 35.3 2.5 35 1-35 175-217 (371)
500 PRK07417 arogenate dehydrogena 48.7 16 0.00036 34.8 3.1 27 1-27 7-33 (279)
No 1
>KOG4254|consensus
Probab=100.00 E-value=3.5e-66 Score=486.54 Aligned_cols=507 Identities=49% Similarity=0.771 Sum_probs=424.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhhhhhccccccccCceEeecCCCCcc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTRDPRSYT 80 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~~~~~~lgl~~~g~~~~~~~~~~~~ 80 (523)
|+|++||+||++|++.|.+|+|+|++...||.+-+.++..||.|+++++.+.+..|....++.+.++|+.+...+|..+.
T Consensus 21 g~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~slLrp~~~~~~~l~r~gl~l~~r~p~sft 100 (561)
T KOG4254|consen 21 GGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLLSLLRPRGPQELELKRHGLRLHERSPCSFT 100 (561)
T ss_pred cCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHHHhhcccccccchHhhhhhhhccCCCcccc
Confidence 89999999999999999999999999999999988888899999999999998899999999999988888877776666
Q ss_pred cCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHH---------
Q psy893 81 PLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNL--------- 151 (523)
Q Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 151 (523)
+.+..+. -+...+.+|.+....++..|...++..+++|.+.+.+++..+.++.+.-+.+...+....+
T Consensus 101 ~~~~~~l---p~~lllg~dm~~n~~~i~kfs~~da~~~peye~fl~~~~~~~~pl~d~~~~~~~~~~~~~l~~~~~~~~~ 177 (561)
T KOG4254|consen 101 PSLMGYL---PEGLLLGRDMAENQKEIAKFSQPDARAYPEYEKFLVELYGAIDPLLDAAPADPPLFIHGLLLVLYTLAST 177 (561)
T ss_pred chhhccc---hhhhhhccccccchhhhhhhcCCccccchhHHHHHHHHHhccchhhhccccccchhhhhhhHHHHHHHHH
Confidence 5544200 0344555666655666888988888899999999999988887776654433222111100
Q ss_pred ----H----hccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCcee
Q psy893 152 ----F----TRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223 (523)
Q Consensus 152 ----~----~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 223 (523)
. .....+..+...+..+....+..||....++..+...+.++...++.+++..|.+++++++..+...|.|.
T Consensus 178 ~~pl~l~~~i~~~~~~~~~~~~~ap~~k~~~~~fesk~~ka~l~tDavi~~~asv~~pgt~yvllh~vlg~~d~~~g~~~ 257 (561)
T KOG4254|consen 178 YAPLLLAGFIKMKPLGALYELLLAPISKVLNDWFESKDLKATLATDAVIGLLASVHTPGTGYVLLHHVLGELDGHKGGWG 257 (561)
T ss_pred hhhHHHhhHhhcCcHHHHHHHHhcchhhHHhhhhhccchhhhhhHHHHHHhhcccCCCCcHHHHHHHHHHhhcccCCccc
Confidence 0 11234445666667788888999988776666655555555556788888999999999988888889999
Q ss_pred ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHH
Q psy893 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERT 302 (523)
Q Consensus 224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~ 302 (523)
||.||+++++.++++.++++|++|.+++.|.+|..++ |+++||+ .||++++++.||+|++++.++.+|++++.+|+++
T Consensus 258 Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~LPeef 336 (561)
T KOG4254|consen 258 YPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEALPEEF 336 (561)
T ss_pred CCCCChhHHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccCCchh
Confidence 9999999999999999999999999999999999999 9999999 9999999999999999999999999999999887
Q ss_pred HHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCC
Q psy893 303 TQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSS 382 (523)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~ 382 (523)
.++++.+...+.+ ++.|.|++.++.. ..+++||.+.+++++++.+...+.+.+...|.....|.+++++||.
T Consensus 337 --~i~q~d~~spv~k-----~~~psFl~~~~~~-~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~ 408 (561)
T KOG4254|consen 337 --VIQQLDTVSPVTK-----DKLPSFLCLPNTK-SLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSS 408 (561)
T ss_pred --hhhhccccccccc-----ccCcceeecCCCC-CCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccc
Confidence 5556555544443 4556677766522 4567899999999889888888888777777777789999999999
Q ss_pred CCCCCCCCCceEEEEEecccccCCCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCcc
Q psy893 383 LDNTLSPPGHHVCLLFTQFTPYKLAGDRD-WTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNI 461 (523)
Q Consensus 383 ~d~~~ap~G~~~i~~~~~~~p~~~~~~~~-~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~ 461 (523)
.||+++|+|+|+|.+|+.+.|+.|.++.. ||+..|++.++++++.+++++|+|++.|+..++.||.|.+|+++.++|++
T Consensus 409 lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~Gn~ 488 (561)
T KOG4254|consen 409 LDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGGNI 488 (561)
T ss_pred cCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCCcc
Confidence 99999999999999999888886555433 89999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCccHHHHHHHHHHHh
Q psy893 462 FHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLM 521 (523)
Q Consensus 462 ~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~asG~~aA~~i~~~~ 521 (523)
||.++..+|....||+..+. .++|||+|||+||+++|||+|++++.|++||...+.+.
T Consensus 489 ~~~~~~ld~g~l~~Pv~~~s--~y~tPI~~LYlcGs~afPGgGV~a~aG~~~A~~a~~~~ 546 (561)
T KOG4254|consen 489 FHGAMGLDQGYLHRPVMAWS--NYSTPIPGLYLCGSGAFPGGGVMAAAGRLAAHSAILDR 546 (561)
T ss_pred cCcccccccccccCCccccc--cCCCCCCceEEecCCCCCCCCccccchhHHHHHHhhhh
Confidence 99999999988899988887 89999999999999999999999999999999887754
No 2
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=1.9e-61 Score=503.90 Aligned_cols=480 Identities=24% Similarity=0.373 Sum_probs=373.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhh--hhhhcccccc-ccCceEeecCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLR--PHIYKDLELK-KHGLKLLTRDPR 77 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~--~~~~~~lgl~-~~g~~~~~~~~~ 77 (523)
|||++||+||++|+++|++|+||||++++||+++|++ ++||.||.|++++.... ..+++++|++ ...+++...++.
T Consensus 5 GaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~ 83 (502)
T TIGR02734 5 GAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPLDPF 83 (502)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEccccHHHHHHHHcCCChhheEEEEECCCc
Confidence 8999999999999999999999999999999999998 79999999998864322 2567777742 123677776654
Q ss_pred CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHh-HHHhhhhcCCCChhhHHHHHHHhccc
Q psy893 78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITN-LLDPLFDIAPHDFGNLLMYNLFTRRG 156 (523)
Q Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (523)
+..++.+ |+.+.++.+.+++.+++.+++|.+.+.|.+|++.+.++.. ....++..++.++.++......
T Consensus 84 -~~~~~~~-----g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 153 (502)
T TIGR02734 84 -YRLCWED-----GSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLP---- 153 (502)
T ss_pred -eEEECCC-----CCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhH----
Confidence 3333343 7788999999999999999999999999999999998876 3344554444443332211100
Q ss_pred cHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCCCHHHHHHHH
Q psy893 157 EMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQAL 236 (523)
Q Consensus 157 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l 236 (523)
.........|+.++++++|.++.++.++...+.+.. ..|.+.++.+.++.+ .....|.+ ++.||++.++++|
T Consensus 154 --~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g-~~p~~~~~~~~l~~~----~~~~~g~~-~~~gG~~~l~~al 225 (502)
T TIGR02734 154 --QLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLG-GNPFRTPSIYALISA----LEREWGVW-FPRGGTGALVAAM 225 (502)
T ss_pred --hhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeec-cCcccchHHHHHHHH----HHhhceEE-EcCCCHHHHHHHH
Confidence 011122357899999999999999999986543222 456666655554432 12345666 8999999999999
Q ss_pred HHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCCe
Q psy893 237 ARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPV 315 (523)
Q Consensus 237 ~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 315 (523)
.+.++++|++|+++++|++|..++ +++++|+ .+|+++.||+||+|+++..+...|++.+..++...+++++++++.+.
T Consensus 226 ~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~ 304 (502)
T TIGR02734 226 AKLAEDLGGELRLNAEVIRIETEG-GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSL 304 (502)
T ss_pred HHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCee
Confidence 999999999999999999999887 7888888 78888999999999999888777887654444455677788888899
Q ss_pred EEEEEecCCCC-cccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHh-hcCCCCCCCeEEEEcCCCCCCCCCCCCce
Q psy893 316 TKINVALKSIP-NFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDA-TQGIPSTRPMIEMVLPSSLDNTLSPPGHH 393 (523)
Q Consensus 316 ~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~v~~~s~~d~~~ap~G~~ 393 (523)
++++++++..+ .+ + .+.+| ++++ .++++.. +... ..|.++++|++++++||..||+++|+|++
T Consensus 305 ~~~~lgl~~~~~~~---~------~~~~~--~~~~-~~~~~~~---~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~ 369 (502)
T TIGR02734 305 FVLYFGLLGVDGHW---P------QLAHH--TLCF-GPRYKEL---FDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCE 369 (502)
T ss_pred eEEEEeeccccCcC---C------CcCce--eEec-CcCHHHH---HHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCc
Confidence 99999999533 11 1 12345 6776 4555432 2222 24667788999999999999999999999
Q ss_pred EEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHh-CCCCCCCeEEeEecChhhHHHhcCCCCCccccCcccccccc
Q psy893 394 VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQY-CPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLL 472 (523)
Q Consensus 394 ~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~-~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~ 472 (523)
++++++. +|+......+|.+ .|+++.+++++.|++. +|+++++|+..++.||.||+++++.++|++||..+.+.|..
T Consensus 370 ~~~~~~~-~~~~~~~~~~~~~-~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~ 447 (502)
T TIGR02734 370 NLYVLAP-VPHLGTADVDWSV-EGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSA 447 (502)
T ss_pred cEEEEEe-CCCCCCCCCCcHH-HHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcc
Confidence 9887764 5653011235754 6899999999999998 99999999999999999999999999999999999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHhcC
Q psy893 473 FNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMRK 523 (523)
Q Consensus 473 ~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~~~ 523 (523)
.+||. ..+|+++|||+||+|+|||+|++++ ||++||++|++++++
T Consensus 448 ~~rp~------~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~ 494 (502)
T TIGR02734 448 WFRPH------NRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAP 494 (502)
T ss_pred cCCCC------CCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 78872 3578999999999999999999986 999999999998763
No 3
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=1.1e-56 Score=465.64 Aligned_cols=475 Identities=21% Similarity=0.283 Sum_probs=346.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhh----hhhhh-ccccccccCceEeecC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLL----RPHIY-KDLELKKHGLKLLTRD 75 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~----~~~~~-~~lgl~~~g~~~~~~~ 75 (523)
|||++||+||++|+++|++|+||||++.+||++++++ ++||.||.|++++... .+.++ +.++.....+++...+
T Consensus 7 GaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (493)
T TIGR02730 7 GSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLETIPDP 85 (493)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcccccCCC
Confidence 8999999999999999999999999999999999998 7999999999885432 23322 2222111114433322
Q ss_pred CCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcc
Q psy893 76 PRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR 155 (523)
Q Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (523)
+. +...+++ |..+.++.|.+++.+++.+++|++.+.|++|++.+.+..+.+..+...+...+..+.. .+....
T Consensus 86 ~~-~~~~~~~-----g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (493)
T TIGR02730 86 VQ-IHYHLPN-----GLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFR-VFFKHP 158 (493)
T ss_pred cc-EEEECCC-----CeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHH-HHhhch
Confidence 22 2222332 6678889999999999999999999999999999888776544331111111111111 111111
Q ss_pred ccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCCCHHHHHHH
Q psy893 156 GEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQA 235 (523)
Q Consensus 156 ~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~ 235 (523)
.....+..+...|+.++++++|.|+.++.++...+.+....++.+.+..+..+.+. .....|.+ ++.||+..++++
T Consensus 159 ~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~---~~~~~g~~-~~~gG~~~l~~~ 234 (493)
T TIGR02730 159 LACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFS---DRHYGGIN-YPKGGVGQIAES 234 (493)
T ss_pred hhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhc---ccccceEe-cCCChHHHHHHH
Confidence 11112334456899999999999999999988765543323334444444433221 11123445 899999999999
Q ss_pred HHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCC
Q psy893 236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASP 314 (523)
Q Consensus 236 l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 314 (523)
|.+.++++|++|+++++|++|..++ +++.+|+ .+|+++.||+||+|++++.++.+|++.+.+++...+.+++++++.+
T Consensus 235 L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s 313 (493)
T TIGR02730 235 LVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPS 313 (493)
T ss_pred HHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCc
Confidence 9999999999999999999999987 8888898 7888899999999999998888899876676666667778888889
Q ss_pred eEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCceE
Q psy893 315 VTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHV 394 (523)
Q Consensus 315 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~~ 394 (523)
.+++|++++.... |. . ...| .+++ ++++.+ ...+|++++++||..||+++|+|+++
T Consensus 314 ~~~~~l~l~~~~~----p~----~-~~~~--~~~~--~~~~~~-----------~~~~~~~~v~~ps~~dps~aP~G~~~ 369 (493)
T TIGR02730 314 FLSLHLGVKADVL----PP----G-TECH--HILL--EDWTNL-----------EKPQGTIFVSIPTLLDPSLAPEGHHI 369 (493)
T ss_pred eEEEEEEecCccC----CC----C-CCcc--EEec--chhhcc-----------CCCCCeEEEEeCCCCCCCCCcCCcEE
Confidence 9999999997421 10 0 1112 2333 222211 12468999999999999999999998
Q ss_pred EEEEecccccCCCC---CCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCccccCccccccc
Q psy893 395 CLLFTQFTPYKLAG---DRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQL 471 (523)
Q Consensus 395 i~~~~~~~p~~~~~---~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~ 471 (523)
|+++++ .+...|. ..+| ++.|+++.+++++.|++++|+++++|+..++.||.|+++|++.++|+ ||..+...|.
T Consensus 370 i~~~~~-~~~~~w~~~~~~~y-~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~-~G~~~~~~~~ 446 (493)
T TIGR02730 370 IHTFTP-SSMEDWQGLSPKDY-EAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGT-YGPIPRRTLP 446 (493)
T ss_pred EEEecC-CChhhccCCCcHHH-HHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcc-cCCccccccc
Confidence 877654 3321111 1134 55799999999999999999999999999999999999999999998 6765543333
Q ss_pred ccCC-CCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHhc
Q psy893 472 LFNR-PLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR 522 (523)
Q Consensus 472 ~~~r-p~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~~ 522 (523)
...+ | .++|+++|||+||+|+|||+|++++ ||++||++|+++++
T Consensus 447 ~~~~~~-------~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 447 GLLPMP-------FNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAADLG 493 (493)
T ss_pred ccccCC-------CCCCCCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 3333 3 5689999999999999999999996 99999999999875
No 4
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=1.9e-56 Score=464.77 Aligned_cols=462 Identities=21% Similarity=0.250 Sum_probs=337.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhh-----hhhhhccccccccCceEeecC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLL-----RPHIYKDLELKKHGLKLLTRD 75 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~-----~~~~~~~lgl~~~g~~~~~~~ 75 (523)
|||++||+||++|+++|++|+||||++++||++++++ ++||.||.|++++.+. .+.++++||++.. ++...+
T Consensus 8 GaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~--~~~~~d 84 (492)
T TIGR02733 8 GAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGLEPGGIHARIFRELGIPLP--EAKILD 84 (492)
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEecCcCCHHHHHHHHcCCCCc--ccccCC
Confidence 8999999999999999999999999999999999998 7999999999986542 2368888886522 123344
Q ss_pred CCCcccCCCCcccCCC-CceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCC----CChhhHHHHH
Q psy893 76 PRSYTPLSPDKWTNKA-KSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAP----HDFGNLLMYN 150 (523)
Q Consensus 76 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 150 (523)
+. +..++.+ + ..+.++.|.+++.+++.+.+|.+.+ |+..+.+..+....++...+ ..+..+...
T Consensus 85 ~~-~~~~~~d-----g~~~~~~~~d~~~~~~~l~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (492)
T TIGR02733 85 PA-CAVDLPD-----GSEPIPLWHDPDRWQKERERQFPGSER----FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQL- 153 (492)
T ss_pred CC-cEEEECC-----CceEeeeecCHHHHHHHHHHHCCChHH----HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH-
Confidence 43 2333332 5 4677889999999999988887643 55555555544333322211 122221110
Q ss_pred HHhccccHHHHHHHHhhcHHHHHHhh--cCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCCC
Q psy893 151 LFTRRGEMKDVYSLLTCSAFSILNDW--FESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGG 228 (523)
Q Consensus 151 ~~~~~~~~~~~~~~~~~s~~~~l~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG 228 (523)
+............+...|+.++++++ +.++.++.++...+.......|.++++.+.++.. .......|.+ +++||
T Consensus 154 ~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~-~~~GG 230 (492)
T TIGR02733 154 VSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVL--QMAQAPHGLW-HLHGS 230 (492)
T ss_pred HHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHh--hccccCCCce-eecCc
Confidence 00001111112223457999999987 8999999999876543333455566555543221 1122335677 89999
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC-----eEEEcCEEEEcCChHHHHHhhCCCCCCCHHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG-----LEIKAKYVLSNTTAKCTLLDLIPKGNLDERT 302 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g-----~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~ 302 (523)
++.|+++|++.++++|++|+++++|++|..++ +++++|+ .+| +++.||+||+|+++..+ .+|++++.+++.+
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~-~~ll~~~~~~~~~ 308 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSL-LELLGPLGLPPGY 308 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCHHHH-HHhcCcccCCHHH
Confidence 99999999999999999999999999999987 7777776 554 57899999999999986 4688766677788
Q ss_pred HHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCC
Q psy893 303 TQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSS 382 (523)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~ 382 (523)
.+++++++++.+.+++++++++... + .....| .... .+ ..+.++++.++
T Consensus 309 ~~~~~~~~~s~~~~~v~l~~~~~~~----~-----~~~~~~--~~~~-~~------------------~~~~~~v~~~~- 357 (492)
T TIGR02733 309 RKRLKKLPEPSGAFVFYLGVKRAAL----P-----VDCPPH--LQFL-SD------------------HQGSLFVSISQ- 357 (492)
T ss_pred HHHHhcCCCCCceEEEEEeeccccc----C-----CCCCcc--eeec-cC------------------CCceEEEEeCC-
Confidence 8889999988889999999987421 0 011122 1111 11 12367787765
Q ss_pred CCCCCCCCCceEEEEEec--ccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCc
Q psy893 383 LDNTLSPPGHHVCLLFTQ--FTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGN 460 (523)
Q Consensus 383 ~d~~~ap~G~~~i~~~~~--~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~ 460 (523)
.||+++|+|++++++.+. +.+|......+| ++.|+++.+++++.|++.+|+++++|+..++.||.||+++++.++|+
T Consensus 358 ~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y-~~~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~ 436 (492)
T TIGR02733 358 EGDGRAPQGEATLIASSFTDTNDWSSLDEEDY-TAKKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGI 436 (492)
T ss_pred ccccCCCCCceEEEEEcCCCHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcE
Confidence 578999999998865542 333321112245 45789999999999999999999999999999999999999999999
Q ss_pred cccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHH
Q psy893 461 IFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRL 520 (523)
Q Consensus 461 ~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~ 520 (523)
+||+.+.+.|...+++ ..+|+++|||+||+|+|||+|++++ ||++||++|+++
T Consensus 437 ~~G~~~~~~q~~~~~~-------~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 437 VGGLGQRPSTFGPFGL-------SSRTPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred ECCCCcCccccCCcCC-------CCCCCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 9999998888644444 4589999999999999999999998 999999999975
No 5
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-54 Score=444.40 Aligned_cols=468 Identities=32% Similarity=0.498 Sum_probs=355.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh-hhhcccc-ccccCceEeecCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP-HIYKDLE-LKKHGLKLLTRDPRS 78 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~-~~~~~lg-l~~~g~~~~~~~~~~ 78 (523)
|||++||+||++||++|++|+||||++++||++++++ .+||+||+|++++.+..+ .++++|+ ++..++.+...++.
T Consensus 10 GaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~Gf~fd~G~~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~- 87 (487)
T COG1233 10 GAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDPGPLFRELGNLDADGLDLLPPDPA- 87 (487)
T ss_pred CCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-ccceEeccCcceeecCchHHHHHHhccCcccceeeeccCCc-
Confidence 8999999999999999999999999999999999998 679999999988655444 6889998 88887877766553
Q ss_pred cccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCC-CChhhHHHHHHHhcccc
Q psy893 79 YTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAP-HDFGNLLMYNLFTRRGE 157 (523)
Q Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 157 (523)
+...+.+ |..+.++.|++.+...+..+++.+.+.+.+++..+.+..+.+...+..+. .... ........
T Consensus 88 ~~~~~~~-----g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 157 (487)
T COG1233 88 YRVFLPD-----GDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELL-----LVPDTPER 157 (487)
T ss_pred eeeecCC-----CCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhh-----hccccHHH
Confidence 4444443 78999999999999999999999999999998877776654433222211 1110 00011222
Q ss_pred HHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCCCHHHHHHHHH
Q psy893 158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALA 237 (523)
Q Consensus 158 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~ 237 (523)
...+......++.+++.++|.++.++..+......+. ..|.++++.+.++++ .....|.+ +|+||++.|+++|+
T Consensus 158 ~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~~~~----~~~~~G~~-~p~GG~~al~~aL~ 231 (487)
T COG1233 158 LLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPPALYLLLSH----LGLSGGVF-YPRGGMGALVDALA 231 (487)
T ss_pred HHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchhHHHHHHHH----hcccCCee-eeeCCHHHHHHHHH
Confidence 3344445567888889888999999999988765554 566666644444443 23455666 99999999999999
Q ss_pred HHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCCeE
Q psy893 238 RSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVT 316 (523)
Q Consensus 238 ~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 316 (523)
+.++++||+|+++++|++|.+++ |+.++++ .+|+.+++|.||++..+.. ...+.+.. . . .+......+..+.+
T Consensus 232 ~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~g~~~~ad~vv~~~~~~~-~~~l~~~~-~-~--~~~~~~~~~~~~al 305 (487)
T COG1233 232 ELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSDGENIEADAVVSNADPAL-LARLLGEA-R-R--PRYRGSYLKSLSAL 305 (487)
T ss_pred HHHHHcCCEEECCCceEEEEEeC-CcceEEeccccceeccceeEecCchhh-hhhhhhhh-h-h--hccccchhhhhHHH
Confidence 99999999999999999999998 8777777 6667889999999999933 34444321 1 0 11222233344555
Q ss_pred EEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCceEEE
Q psy893 317 KINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCL 396 (523)
Q Consensus 317 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~~i~ 396 (523)
..+++++... .++.+| ..++. .+..+.+.+.|.+ ..|+++ ++++++||..||++||+|++.
T Consensus 306 ~~~~g~~~~~-----------~~~~~~-~~~~~-~~~~~~~~~~~~~-~~g~~~---~~~v~~ps~~Dps~AP~G~~~-- 366 (487)
T COG1233 306 SLYLGLKGDL-----------LPLAHH-TTILL-GDTREQIEEAFDD-RAGRPP---PLYVSIPSLTDPSLAPEGKHS-- 366 (487)
T ss_pred HhccCCCCCC-----------cchhhc-ceEec-CCcHHHHHHHhhh-hcCCCC---ceEEeCCCCCCCccCCCCCcc--
Confidence 6666666420 112333 24555 6777888889988 777654 889999999999999999982
Q ss_pred EEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCccccCcccccccccCCC
Q psy893 397 LFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRP 476 (523)
Q Consensus 397 ~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~rp 476 (523)
++..+.++. ...++++.|+++.++ ++.+++++|+++++|+..++.||.+++++.+.++|+++|+.+++.|...+||
T Consensus 367 ~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp 442 (487)
T COG1233 367 TFAQLVPVP---SLGDYDELKESLADA-IDALEELAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRP 442 (487)
T ss_pred eeeeeeecC---cCCChHHHHHHHHHH-HHHHhhcCCCcccceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCC
Confidence 222233332 123456789999999 8899999999999999999999999999999999999999999999988888
Q ss_pred CCCCCCCCCCCCCCCeEecCCCCCCCCCCCCccHHHHHHHHHHHh
Q psy893 477 LPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLM 521 (523)
Q Consensus 477 ~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~asG~~aA~~i~~~~ 521 (523)
. ..+|+++|||+||++||||+|+++++|..+|..++.+.
T Consensus 443 ~------~~~t~i~~LYl~Ga~t~PG~Gv~g~~g~~~a~~~~~~~ 481 (487)
T COG1233 443 P------PKSTPIKGLYLVGASTHPGGGVPGVPGSAAAVALLIDL 481 (487)
T ss_pred C------CCCCCcCceEEeCCcCCCCCCcchhhhhHHHHHhhhcc
Confidence 3 22689999999999999999999998888887776654
No 6
>PLN02612 phytoene desaturase
Probab=100.00 E-value=3.4e-32 Score=284.42 Aligned_cols=427 Identities=15% Similarity=0.161 Sum_probs=253.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR 77 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~ 77 (523)
|||++||+||++|+++|++|+|+|+++++||++.++...+|+.+|.|.|++....| .++++||+... +++......
T Consensus 100 G~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~-~~~~~~~~~ 178 (567)
T PLN02612 100 GAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR-LQWKEHSMI 178 (567)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc-ceecccceE
Confidence 89999999999999999999999999999999999864489999999998766555 57788887644 333221110
Q ss_pred CcccCCCCcccCCCCce--eecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHH--HHHh
Q psy893 78 SYTPLSPDKWTNKAKSL--TLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMY--NLFT 153 (523)
Q Consensus 78 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 153 (523)
+...... +... .++. ..|.... .....+.. .+..++.+.... .+..
T Consensus 179 -~~~~~~~-----~~~~~~~~p~-----------~~P~~l~---~~~~~l~~----------~~~ls~~~kl~~~~~~~~ 228 (567)
T PLN02612 179 -FAMPNKP-----GEFSRFDFPE-----------VLPAPLN---GIWAILRN----------NEMLTWPEKIKFAIGLLP 228 (567)
T ss_pred -EEecCCC-----CceeeCcCch-----------hcCChhh---hhHHHHhc----------CccCCHHHHHHHHHhhhH
Confidence 1000000 1110 1110 0000000 00000000 000000000000 0000
Q ss_pred c-cccHHHHHHHHhhcHHHHHHhhcCChHHHH-HHhhhhhccCCCCCCCcchHHHHHHHHhhcccCC-CCceeecCCCH-
Q psy893 154 R-RGEMKDVYSLLTCSAFSILNDWFESEPLKA-TLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGV-KGAWAYPEGGM- 229 (523)
Q Consensus 154 ~-~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~gG~- 229 (523)
. .........+...|+.+|+++...++.+.. ++........+..|.+.++.+.+ ..+....... .....++.|+.
T Consensus 229 ~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l-~~l~~~l~~~~gs~~~~~~G~~~ 307 (567)
T PLN02612 229 AIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPP 307 (567)
T ss_pred HhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHH-HHHHHHHhccCCceEeeecCCch
Confidence 0 000001112234689999998776665554 44433211112345454443322 2111111111 11233667765
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhc
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQS 308 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~ 308 (523)
..+++.|++.+++.|++|++|++|++|..++++++++|+ .+|+++.||+||+|+|+.. +..|+++...+..+.+++++
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~-l~~Ll~~~~~~~~~~~~l~~ 386 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDI-LKLLLPDQWKEIPYFKKLDK 386 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHH-HHHhCcchhcCcHHHHHHHh
Confidence 689999999999999999999999999986546666777 7888999999999999876 46787754333356667777
Q ss_pred CCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCC
Q psy893 309 IDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLS 388 (523)
Q Consensus 309 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~a 388 (523)
+.+ .++++|+++++++. +. +. .| +++ ..+ + ...++...++. .+.++
T Consensus 387 l~~-~~v~~v~l~~dr~~-~~---------~~-~~--~~~--~~~-------------~----~~~~~~d~S~~-~~~~~ 432 (567)
T PLN02612 387 LVG-VPVINVHIWFDRKL-KN---------TY-DH--LLF--SRS-------------P----LLSVYADMSTT-CKEYY 432 (567)
T ss_pred cCC-CCeEEEEEEECccc-CC---------CC-Cc--eee--cCC-------------C----Cceeehhhhhc-chhhc
Confidence 664 47999999999763 21 11 12 332 111 0 01122222222 23456
Q ss_pred CCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC------CC-eEEeEecChhhHHHhcCCCCCcc
Q psy893 389 PPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT------QD-IVGYEILTPPDLEKEFGLTGGNI 461 (523)
Q Consensus 389 p~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~------~~-i~~~~~~tP~~~~~~~~~~~G~~ 461 (523)
++|++++.++. .+. .+|....++++.+.++++|++++|+.. .+ +.+..+.+|.++... .+++.
T Consensus 433 ~~~~~ll~~~~--~~a-----~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~--~pg~~- 502 (567)
T PLN02612 433 DPNKSMLELVF--APA-----EEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKT--VPNCE- 502 (567)
T ss_pred CCCCeEEEEEE--EcC-----hhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEe--CCCCc-
Confidence 66776555332 221 356556789999999999999999762 23 334677888876321 11111
Q ss_pred ccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC--CCCCCc--cHHHHHHHHHHHhc
Q psy893 462 FHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVNRLMR 522 (523)
Q Consensus 462 ~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~~~~~ 522 (523)
..+| ..+||++||||||||+.++ +++.|| ||+.||++|+++++
T Consensus 503 -----------~~rp-------~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~ 549 (567)
T PLN02612 503 -----------PCRP-------LQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYE 549 (567)
T ss_pred -----------ccCc-------cccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 2356 5688999999999999764 467777 99999999999875
No 7
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-32 Score=277.60 Aligned_cols=415 Identities=20% Similarity=0.211 Sum_probs=252.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR 77 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~ 77 (523)
|||++||+||+.|+++|++|+|||+++++||+++++. .+|+.||.|.+++....+ .++++||++.. +.+.....
T Consensus 6 GaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~-~~~~~~~~- 82 (434)
T PRK07233 6 GGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDELGLEDK-LRWRETKT- 82 (434)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHcCCCCc-eeeccCce-
Confidence 8999999999999999999999999999999999987 679999999888654444 57788877543 33322111
Q ss_pred CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcccc
Q psy893 78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGE 157 (523)
Q Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (523)
...+. +..+.+ .+... +..+..-.. .+.+......+ ..... .
T Consensus 83 --~~~~~------~~~~~~-~~~~~----~~~~~~~~~------~~~~~~~~~~~-~~~~~-----------------~- 124 (434)
T PRK07233 83 --GYYVD------GKLYPL-GTPLE----LLRFPHLSL------IDKFRLGLLTL-LARRI-----------------K- 124 (434)
T ss_pred --EEEEC------CeEecC-CCHHH----HHcCCCCCH------HHHHHhHHHHH-hhhhc-----------------c-
Confidence 01111 332221 12211 111111000 00000000000 00000 0
Q ss_pred HHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHh--hcc--cCCCCceeecCCCHHHHH
Q psy893 158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVM--GGA--EGVKGAWAYPEGGMGAVS 233 (523)
Q Consensus 158 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~g~~~~~~gG~~~l~ 233 (523)
........|+.+|+.+++.++.++.++...........+.+.++...+ ..+. ... ......+.+++||++.++
T Consensus 125 --~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~gG~~~l~ 201 (434)
T PRK07233 125 --DWRALDKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLW-SRIKRRGNRRYSLFGEKLGYLEGGFATLI 201 (434)
T ss_pred --cccccccccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHH-HHHhhhhccccccCCceEeccCCCHHHHH
Confidence 000112357888998888766666666544331112455555544322 1111 000 000112458999999999
Q ss_pred HHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCC
Q psy893 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYAS 313 (523)
Q Consensus 234 ~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 313 (523)
++|++.+++.|++|+++++|++|..++ ++++.+..++++++||+||+|+++..+ .+|+++ +++...+.++++.+.
T Consensus 202 ~~l~~~l~~~g~~v~~~~~V~~i~~~~-~~~~~~~~~~~~~~ad~vI~a~p~~~~-~~ll~~--~~~~~~~~~~~~~~~- 276 (434)
T PRK07233 202 DALAEAIEARGGEIRLGTPVTSVVIDG-GGVTGVEVDGEEEDFDAVISTAPPPIL-ARLVPD--LPADVLARLRRIDYQ- 276 (434)
T ss_pred HHHHHHHHhcCceEEeCCCeeEEEEcC-CceEEEEeCCceEECCEEEECCCHHHH-HhhcCC--CcHHHHhhhcccCcc-
Confidence 999999999999999999999999887 666555566778999999999999885 577754 555666777887764
Q ss_pred CeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCce
Q psy893 314 PVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHH 393 (523)
Q Consensus 314 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~ 393 (523)
+.+++++.++++.. ..+ +++. .+ +..++..+..++..+|..+|+|++
T Consensus 277 ~~~~~~l~~~~~~~-------------~~~--~~~~-~~-----------------~~~~~~~~~~~s~~~~~~~~~g~~ 323 (434)
T PRK07233 277 GVVCMVLKLRRPLT-------------DYY--WLNI-ND-----------------PGAPFGGVIEHTNLVPPERYGGEH 323 (434)
T ss_pred ceEEEEEEecCCCC-------------CCc--eeee-cC-----------------CCCCcceEEEecccCCccccCCce
Confidence 67888999987531 111 3332 11 012333344456678877878887
Q ss_pred EEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCC-CeEEeEecChhhHHHhcCCCCCccccCcccccccc
Q psy893 394 VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQ-DIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLL 472 (523)
Q Consensus 394 ~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~-~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~ 472 (523)
++.+.. +.+.. .++....++++.+++++.|++++|+++. .++...+.. +.. . +..|. +. ..
T Consensus 324 ~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r---~~~--a---~~~~~----~g-~~ 385 (434)
T PRK07233 324 LVYLPK-YLPGD----HPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISR---APY--A---QPIYE----PG-YL 385 (434)
T ss_pred EEEEee-ecCCC----ChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEE---ecc--c---ccccc----Cc-hh
Confidence 654332 22211 1122346789999999999999998853 455444321 110 0 01111 11 01
Q ss_pred cCCCCCCCCCCCCCCCCCCeEecCCCCC--CCCCCCCc--cHHHHHHHHHHHhc
Q psy893 473 FNRPLPIQGPSSPFTLIPHLLLCGSGAH--PGGGVCGA--PGYIAAQMVNRLMR 522 (523)
Q Consensus 473 ~~rp~~~~~~~~~~t~i~~LylaG~~~~--pg~g~~~a--sG~~aA~~i~~~~~ 522 (523)
..+| ..+++++|||+||+++. ++.++.+| ||..||++|+++++
T Consensus 386 ~~~~-------~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 386 DKIP-------PYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred hcCC-------CcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 1233 45678999999999642 34578877 99999999999875
No 8
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.97 E-value=9.1e-29 Score=244.52 Aligned_cols=411 Identities=18% Similarity=0.168 Sum_probs=253.9
Q ss_pred CCChhHHHHHHHHHHcC--CcEEEEccCCCCCcceeeecccCCceeccchhhhhhhh---hhhhccccccccCceEeecC
Q psy893 1 EAGHNGLVSAAYLARAG--LSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLR---PHIYKDLELKKHGLKLLTRD 75 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~---~~~~~~lgl~~~g~~~~~~~ 75 (523)
|||++||+||++|++++ .+|+|||+.+++||.++|+. .+||.||.|++.+.... .+++++||+++. +.+-...
T Consensus 7 G~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~-l~~~~~~ 84 (444)
T COG1232 7 GGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDK-LLWNSTA 84 (444)
T ss_pred CCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHh-hccCCcc
Confidence 89999999999999999 99999999999999999997 89999999987754442 367889998866 3322111
Q ss_pred CCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcC-CCChhhHHHHHHHhc
Q psy893 76 PRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIA-PHDFGNLLMYNLFTR 154 (523)
Q Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 154 (523)
.. .++. +|+.+.++... +..+...... ........+..+...+ ..+
T Consensus 85 ~~---~i~~-----~gkl~p~P~~~------i~~ip~~~~~-------~~~~~~~~~~~~~~~~~~~~------------ 131 (444)
T COG1232 85 RK---YIYY-----DGKLHPIPTPT------ILGIPLLLLS-------SEAGLARALQEFIRPKSWEP------------ 131 (444)
T ss_pred cc---eEee-----CCcEEECCccc------eeecCCcccc-------chhHHHHHHHhhhcccCCCC------------
Confidence 11 1111 16666655442 1111111100 0001111111222111 010
Q ss_pred cccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh-ccCCCCCCCcchHHHH--HHHHhhcc-----------c----
Q psy893 155 RGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL-IGAMVSPHSPSTSYVL--LHHVMGGA-----------E---- 216 (523)
Q Consensus 155 ~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~-----------~---- 216 (523)
....++.+|+.++|.++.+..++..... ++. .+.++.++...+ ........ .
T Consensus 132 ---------~~d~sv~~f~r~~fG~ev~~~~~~pll~giy~-~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~ 201 (444)
T COG1232 132 ---------KQDISVGEFIRRRFGEEVVERFIEPLLEGIYA-GDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQS 201 (444)
T ss_pred ---------CCCcCHHHHHHHHHhHHHHHHHHHHHhhchhc-CCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccc
Confidence 0124778888888888777766654331 111 122332222111 00000000 0
Q ss_pred CCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCCCC
Q psy893 217 GVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKG 296 (523)
Q Consensus 217 ~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~~~ 296 (523)
...+.+.+++||+++|+++|++.++.. |+++++|++|..+. ...+.+..+|++++||.||+|+|++.+ ..|+++.
T Consensus 202 ~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~-~~~~~~~~~g~~~~~D~VI~t~p~~~l-~~ll~~~ 276 (444)
T COG1232 202 LKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKG-AGKTIVDVGGEKITADGVISTAPLPEL-ARLLGDE 276 (444)
T ss_pred cccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcC-CccEEEEcCCceEEcceEEEcCCHHHH-HHHcCCc
Confidence 012345688999999999999998865 99999999999985 434333378888999999999999995 6888762
Q ss_pred CCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCC-eE
Q psy893 297 NLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRP-MI 375 (523)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~-~~ 375 (523)
.....+.++.+. ++.+|.+++++.... ...+.+++++ .++ .+ ..
T Consensus 277 ----~~~~~~~~~~~~-s~~~vv~~~~~~~~~-----------~~~~~~g~~i-ad~------------------~~~~~ 321 (444)
T COG1232 277 ----AVSKAAKELQYT-SVVTVVVGLDEKDNP-----------ALPDGYGLLI-ADD------------------DPYIL 321 (444)
T ss_pred ----chhhhhhhcccc-ceEEEEEEecccccc-----------CCCCceEEEE-ecC------------------CCcce
Confidence 234556666655 677778888875311 1223446776 332 12 56
Q ss_pred EEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcC
Q psy893 376 EMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFG 455 (523)
Q Consensus 376 ~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~ 455 (523)
.++++|+..|...|+|++++.+... .+.. ..-.....|++.+.+++.|.++++...+.+ ...+.. |. ..
T Consensus 322 a~~~~S~~~p~~~p~g~~ll~~~~~-~~g~----~~~~~~~dee~~~~~l~~L~~~~~~~~~~~-~~~v~r---~~--~~ 390 (444)
T COG1232 322 AITFHSNKWPHEAPEGKTLLRVEFG-GPGD----ESVSTMSDEELVAAVLDDLKKLGGINGDPV-FVEVTR---WK--YA 390 (444)
T ss_pred eEEEecccCCCCCCCCcEEEEEEee-cCCC----cchhccCHHHHHHHHHHHHHHHcCcCcchh-heeeee---cc--cc
Confidence 7888999999999999998887753 2221 111234568999999999999997555443 222221 11 23
Q ss_pred CCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHH
Q psy893 456 LTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNR 519 (523)
Q Consensus 456 ~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~ 519 (523)
.|+..+.+. ++....|. ...+..+|++.+|.|- .|.|++.| +|+.||+++++
T Consensus 391 ~PqY~vG~~----~~~~~ir~-------~l~~~y~gi~~~G~~~-~g~g~~d~I~~g~~aa~~l~~ 444 (444)
T COG1232 391 MPQYEVGHL----DRLEPIRA-------ALKGAYPGIKSVGRYG-EGVGLPDCIAAGKEAAEQLLS 444 (444)
T ss_pred CCccchhHH----HHHHHHHH-------hhccccCCeEEeccCC-CCCCchHHHHHHHHHHHHhhC
Confidence 343333222 11111222 2333448999999996 44789987 99999998863
No 9
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.97 E-value=5.3e-28 Score=249.27 Aligned_cols=421 Identities=18% Similarity=0.197 Sum_probs=233.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR 77 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~ 77 (523)
|||++||+||++|+++|++|+|+|+++++||++.++...+|+.+|.|.+++....| .++++||+... +.+.....
T Consensus 6 GaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~-~~~~~~~~- 83 (453)
T TIGR02731 6 GAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR-LQWKSHSM- 83 (453)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc-eeecCCce-
Confidence 89999999999999999999999999999999998753579999999988665555 46677776543 32222111
Q ss_pred CcccCCCCcccCCCCce--eec---CCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHH
Q psy893 78 SYTPLSPDKWTNKAKSL--TLG---LDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLF 152 (523)
Q Consensus 78 ~~~~~~~~~~~~~g~~~--~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (523)
.+.....+ +... .++ .........+ +..+. ....+++.-.. .+.. ...
T Consensus 84 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~------------~~~ 136 (453)
T TIGR02731 84 IFNQPDKP-----GTFSRFDFPDIPAPFNGVAAIL-RNNDM--------LTWPEKIKFAI-GLLP------------AIV 136 (453)
T ss_pred EEecCCCC-----cceeeccCCCCCCCHHHHHHHh-cCcCC--------CCHHHHHHHHH-HhHH------------HHh
Confidence 01000000 1111 111 0000000000 00000 00000000000 0000 000
Q ss_pred hccccHHHHHHHHhhcHHHHHHhhcCChHHHH-HHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCc-eeecCCC-H
Q psy893 153 TRRGEMKDVYSLLTCSAFSILNDWFESEPLKA-TLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGA-WAYPEGG-M 229 (523)
Q Consensus 153 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~gG-~ 229 (523)
. .......+...|+.+|+++...++.+.. ++......-....|.+.++.+.+ ..+........+. ..+..|+ +
T Consensus 137 ~---~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~-~~l~~~~~~~~g~~~~~~~g~~~ 212 (453)
T TIGR02731 137 R---GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVL-TALNRFLQERHGSKMAFLDGAPP 212 (453)
T ss_pred c---CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHhcCCCCeeEeecCCCh
Confidence 0 0001112245789999998766666554 33322211111345544443332 1111101111121 1234444 5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe-----EEEcCEEEEcCChHHHHHhhCCCCCCCHHHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL-----EIKAKYVLSNTTAKCTLLDLIPKGNLDERTT 303 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~-----~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~ 303 (523)
+.+++.|.+.+++.|++|++|++|++|..++++++++|+ .+|+ ++.||.||+|+++.. +.+|++...-...+.
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL~~~~~~~~~~ 291 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLLPQPWKQMPFF 291 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhCchhhhcCHHH
Confidence 789999999999999999999999999875536677787 5665 789999999999987 578886532123466
Q ss_pred HHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCC
Q psy893 304 QAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSL 383 (523)
Q Consensus 304 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~ 383 (523)
+.++++.+ .+++++++.++++.. .. .++++. ..+. ..+.....+..
T Consensus 292 ~~~~~~~~-~~~~~v~l~~~~~~~------------~~--~~~~~~-~~~~------------------~~~~~~~s~~~ 337 (453)
T TIGR02731 292 QKLNGLEG-VPVINVHIWFDRKLT------------TV--DHLLFS-RSPL------------------LSVYADMSETC 337 (453)
T ss_pred HHhhcCCC-CcEEEEEEEEccccC------------CC--Cceeee-CCCc------------------ceeecchhhhC
Confidence 67777764 478999999997531 01 112221 1110 00000011111
Q ss_pred CCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-----C-CeEEeEecChhhHHHhcCCC
Q psy893 384 DNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-----Q-DIVGYEILTPPDLEKEFGLT 457 (523)
Q Consensus 384 d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-----~-~i~~~~~~tP~~~~~~~~~~ 457 (523)
...++++++++.+++. .. ..|....++++.+.++++|++++|+.. . .+.+.++..|.+. +.
T Consensus 338 -~~~~~~~~~l~~~~~~--~~-----~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~~--- 404 (453)
T TIGR02731 338 -KEYADPDKSMLELVFA--PA-----ADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--YK--- 404 (453)
T ss_pred -hhhcCCCCeEEEEEec--Ch-----hhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--ec---
Confidence 1233455565554331 11 133345779999999999999998521 1 2444555565541 11
Q ss_pred CCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC--CCCCCc--cHHHHHHHHH
Q psy893 458 GGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVN 518 (523)
Q Consensus 458 ~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~ 518 (523)
..+.+ ...+| ..++|++||||||+++..+ +++.+| ||..||++|+
T Consensus 405 --------~~pg~-~~~~~-------~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 405 --------TTPGR-QQYRP-------HQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred --------cCCCC-hhhCc-------cccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 01111 11234 5678899999999998422 367777 9999999874
No 10
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.97 E-value=2.9e-28 Score=250.28 Aligned_cols=441 Identities=16% Similarity=0.164 Sum_probs=234.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR 77 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~ 77 (523)
|||++||+||+.|+++|++|+|+|+++++||+++++...+|+.+|.|.|++....+ .+++++|+.+. +.+...
T Consensus 6 G~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~--- 81 (474)
T TIGR02732 6 GAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDN-LLLKEH--- 81 (474)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCccc-cccccc---
Confidence 89999999999999999999999999999999999754679999999998765555 45666776543 221110
Q ss_pred CcccCCCCcccCCCCceeec-----CCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHH
Q psy893 78 SYTPLSPDKWTNKAKSLTLG-----LDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLF 152 (523)
Q Consensus 78 ~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (523)
...+... ++....+. ..+-.....+.+... +....++..... ....+ .. ..+.
T Consensus 82 -~~~~~~~----~~~~~~~~~~~~~~~P~~~~~~~l~~~~---------ls~~dklr~~~~-~~~~~---~~----~~~~ 139 (474)
T TIGR02732 82 -THTFVNK----GGDIGELDFRFATGAPFNGLKAFFTTSQ---------LKWVDKLRNALA-LGTSP---IV----RGLV 139 (474)
T ss_pred -eeEEEcC----CCcccccccCCCCCCchhhhHHHhcCCC---------CCHHHHHHHHHH-hhhhH---HH----hhcc
Confidence 0000000 01110000 000000011111000 001111100000 00000 00 0000
Q ss_pred hccccHHHHHHHHhhcHHHHHHhhcCChH-HHHHHhhhhhccCCCCCCCcchHHHHH-HHHhhcccCCCCceeecCCCHH
Q psy893 153 TRRGEMKDVYSLLTCSAFSILNDWFESEP-LKATLLTDGLIGAMVSPHSPSTSYVLL-HHVMGGAEGVKGAWAYPEGGMG 230 (523)
Q Consensus 153 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~gG~~ 230 (523)
........+......|+.+|++++..++. ++.++...+.-.....+++.++.+.+. .+.+.. ........+++||..
T Consensus 140 ~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~-~~~~s~~~~~~g~~~ 218 (474)
T TIGR02732 140 DYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAA-KTEASKLRMLKGSPD 218 (474)
T ss_pred ccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CCCcceeeeecCCcc
Confidence 00000011112234799999999998876 555555443211123455554443322 112221 112223347888877
Q ss_pred H-HHHHHHHHHHHCCcEEEeCceeeEEEECC--CC--CeEEEE-eCC---eEEEcCEEEEcCChHHHHHhhCCCCCCCHH
Q psy893 231 A-VSQALARSAQASGAQLFTSQTVTEITLDS--DK--RASGVV-TNG---LEIKAKYVLSNTTAKCTLLDLIPKGNLDER 301 (523)
Q Consensus 231 ~-l~~~l~~~~~~~G~~i~~~~~V~~I~~~~--~~--~~~~v~-~~g---~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~ 301 (523)
. +.+.|.+.+++.|++|+++++|++|+.++ ++ ++++|+ .+| +++.||+||+|++++.+ .+|+++..-...
T Consensus 219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~-~~Ll~~~~~~~~ 297 (474)
T TIGR02732 219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGI-KRLLPQEWRQFE 297 (474)
T ss_pred hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHH-HhhCChhhhcCH
Confidence 6 66779999999999999999999999854 12 366766 444 56899999999999985 689875311123
Q ss_pred HHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceE--EeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEc
Q psy893 302 TTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSI--HLNCEDMQQVFDAYQDATQGIPSTRPMIEMVL 379 (523)
Q Consensus 302 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~ 379 (523)
..+.+.++.+. ++++|++.++++... +. +.... ..+ ..+.+++- | + + ...+.+...
T Consensus 298 ~~~~l~~l~~~-pi~~v~l~~~~~v~~---~~-----~~~~~-~~l~~~~~~~~~~-----~--~--~---~~~~~~~~~ 355 (474)
T TIGR02732 298 EFDNIYKLDAV-PVATVQLRYDGWVTE---LQ-----DLAKR-KQLKRAAGLDNLL-----Y--T--A---DADFSCFAD 355 (474)
T ss_pred HHhhHhcCCCC-CeEEEEEEecccccc---cc-----chhhh-hcccccccccccc-----c--c--c---Cccceeeeh
Confidence 56677777764 789999999865321 10 00000 000 00000000 0 0 0 000011100
Q ss_pred CCCCCC-CCCCCCce-EEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCC-eEEeEecChhhHHHhcCC
Q psy893 380 PSSLDN-TLSPPGHH-VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQD-IVGYEILTPPDLEKEFGL 456 (523)
Q Consensus 380 ~s~~d~-~~ap~G~~-~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~-i~~~~~~tP~~~~~~~~~ 456 (523)
-+...+ .+.++|.. ++.+++. + . .++.+..++++.++++++|++++|.+++. ++...+.. +.+
T Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~--~---~--~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~---~~~---- 421 (474)
T TIGR02732 356 LALTSPDDYYKEGQGSLLQCVLT--P---G--DPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVK---LAQ---- 421 (474)
T ss_pred hhccCHHHHhccCCCeEEEEEEe--C---h--hhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEE---ecC----
Confidence 000112 12333333 2333321 1 0 12333466899999999999999987543 44322221 110
Q ss_pred CCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC--CCCCCc--cHHHHHHHHH
Q psy893 457 TGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVN 518 (523)
Q Consensus 457 ~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~ 518 (523)
++|...+.. ...|| +.+|+++|||+||||+..+ .++.+| ||+.||++|+
T Consensus 422 ---a~~~~~pg~---~~~~P-------~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 422 ---SLYREAPGM---DPFRP-------DQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred ---ceeccCCCC---cccCC-------CCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 122111111 12456 7899999999999999653 234455 9999999874
No 11
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.97 E-value=3.2e-28 Score=251.60 Aligned_cols=417 Identities=16% Similarity=0.142 Sum_probs=237.9
Q ss_pred CCChhHHHHHHHHHHcC--CcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecC
Q psy893 1 EAGHNGLVSAAYLARAG--LSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRD 75 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~ 75 (523)
|||++||+||+.|+++| ++|+|||+++++||+++|.. .+|+.+|.|++++....+ .++++||++.. +... ..
T Consensus 7 GaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~-~~~~-~~ 83 (451)
T PRK11883 7 GGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDE-LVAN-TT 83 (451)
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCccc-eecC-CC
Confidence 89999999999999988 89999999999999999987 689999999987544443 56777776532 1110 01
Q ss_pred CCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHH--HHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHh
Q psy893 76 PRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNF--EKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFT 153 (523)
Q Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (523)
... .++. +|+.+.++.+. +..+ +.....+ .+++....++.... .+ ... .
T Consensus 84 ~~~--~~~~-----~g~~~~~p~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~--~----------- 134 (451)
T PRK11883 84 GQS--YIYV-----NGKLHPIPPGT------VMGI-PTSIAPFLFAGLVSPIGKLRAAA-DL-RPP--R----------- 134 (451)
T ss_pred Ccc--eEEE-----CCeEEECCCCC------eecc-CCCchhhhcCCCCCHHHHHHhhC-cc-cCC--C-----------
Confidence 111 1111 14433333210 0000 0000000 00111111111000 00 000 0
Q ss_pred ccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHH---HHHH----------hhccc----
Q psy893 154 RRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVL---LHHV----------MGGAE---- 216 (523)
Q Consensus 154 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~---- 216 (523)
.. .....|+.+|+.+.+.+..++.++...........+.+.++.+.+ .... .....
T Consensus 135 -~~------~~~~~s~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (451)
T PRK11883 135 -WK------PGQDQSVGAFFRRRFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKK 207 (451)
T ss_pred -CC------CCCCcCHHHHHHHhccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCC
Confidence 00 001257888888877766666665543321111234444332221 1110 00000
Q ss_pred CCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCC
Q psy893 217 GVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPK 295 (523)
Q Consensus 217 ~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~ 295 (523)
.....+.+++||++.+++.|++.+... +|+++++|++|..++ +++ .|. .+|+++.||+||+|+|+..+ .+++.+
T Consensus 208 ~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~-~~~-~v~~~~g~~~~~d~vI~a~p~~~~-~~l~~~ 282 (451)
T PRK11883 208 KTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSG-DGY-EIVLSNGGEIEADAVIVAVPHPVL-PSLFVA 282 (451)
T ss_pred CCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcC-CeE-EEEECCCCEEEcCEEEECCCHHHH-HHhccC
Confidence 012234478999999999999987543 899999999999887 544 466 78888999999999999986 566543
Q ss_pred CCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeE
Q psy893 296 GNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMI 375 (523)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 375 (523)
+...+.++++.+. ++.+|++.++++..+ .+ +...+++ ..+ ...+..
T Consensus 283 ----~~~~~~~~~~~~~-~~~~v~l~~~~~~~~-----------~~-~~~~~~~-~~~----------------~~~~~~ 328 (451)
T PRK11883 283 ----PPAFALFKTIPST-SVATVALAFPESATN-----------LP-DGTGFLV-ARN----------------SDYTIT 328 (451)
T ss_pred ----hhHHHHHhCCCCC-ceEEEEEEeccccCC-----------CC-CceEEEe-cCC----------------CCCcEE
Confidence 2345677788776 677999999865211 01 1113444 211 012444
Q ss_pred EEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcC
Q psy893 376 EMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFG 455 (523)
Q Consensus 376 ~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~ 455 (523)
.+.+++..+|..+|+|..++.++.. .+. . ....+..++++.+.+++.|+++++ +....+...+. +|..-+.
T Consensus 329 ~~~~~s~~~~~~~p~g~~~~~~~~~-~~~---~-~~~~~~~~~~~~~~~~~~L~~~~g-~~~~~~~~~~~---rw~~a~p 399 (451)
T PRK11883 329 ACTWTSKKWPHTTPEGKVLLRLYVG-RPG---D-EAVVDATDEELVAFVLADLSKVMG-ITGDPEFTIVQ---RWKEAMP 399 (451)
T ss_pred EEEeEcCcCCCCCCCCcEEEEEecC-CCC---C-chhccCCHHHHHHHHHHHHHHHhC-CCCCceEEEEe---ecCccCC
Confidence 5656677778888988876655432 221 1 111123568999999999999974 43333333332 2322111
Q ss_pred CCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHH
Q psy893 456 LTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNR 519 (523)
Q Consensus 456 ~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~ 519 (523)
.|+... ..+....++ .... ++|||++|+|+. |.|+++| ||+.||++|++
T Consensus 400 -----~~~~~~-~~~~~~l~~-------~l~~-~~~l~~aG~~~~-g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 400 -----QYGVGH-IERVAELRA-------GLPH-YPGLYVAGASFE-GVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred -----CCCccH-HHHHHHHHH-------hhhh-CCCEEEECcccC-CccHHHHHHHHHHHHHHHHh
Confidence 121111 111111122 2222 679999999986 6789987 99999999986
No 12
>PLN02487 zeta-carotene desaturase
Probab=99.97 E-value=9.6e-28 Score=247.72 Aligned_cols=439 Identities=14% Similarity=0.115 Sum_probs=241.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR 77 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~ 77 (523)
|||++||++|+.|+++|++|+|+|+++.+||+++++...+|+.+|.|.|++....+ .++++||+++. +.+. +
T Consensus 82 G~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~-~~~~--~-- 156 (569)
T PLN02487 82 GAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADEN-LLVK--D-- 156 (569)
T ss_pred CCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccc-cccc--c--
Confidence 89999999999999999999999999999999999854579999999988655444 56777877543 2221 1
Q ss_pred CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHH-----
Q psy893 78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLF----- 152 (523)
Q Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 152 (523)
....+... ++..-.+.. .+ +.... +. .+..++..+..++.+.++....
T Consensus 157 ~~~~~~~~----~g~~~~~~~----------~~-p~~~p-----l~-------~~~~~l~~~~Ls~~dklr~~~~l~~~~ 209 (569)
T PLN02487 157 HTHTFVNK----GGDVGELDF----------RF-PVGAP-----LH-------GIKAFLTTNQLEPYDKARNALALATSP 209 (569)
T ss_pred cceeEEec----CCEEeeecc----------CC-CCCch-----hh-------hHHHHHcCCCCCHHHHHhhcccccccc
Confidence 11101000 011100000 00 00000 00 0001111111111111000000
Q ss_pred --h---ccc-cHHHHHHHHhhcHHHHHHhhcCCh-HHHHHHhhhhhccCCCCCCCcchHHHHHHH-HhhcccCCCCceee
Q psy893 153 --T---RRG-EMKDVYSLLTCSAFSILNDWFESE-PLKATLLTDGLIGAMVSPHSPSTSYVLLHH-VMGGAEGVKGAWAY 224 (523)
Q Consensus 153 --~---~~~-~~~~~~~~~~~s~~~~l~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~ 224 (523)
. ... .+..+......|+.+|+.++..++ .++.++...+.......+++.++.+.+... .+. .....+...+
T Consensus 210 ~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~-~~~~~~~l~~ 288 (569)
T PLN02487 210 VVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA-TKTEASLLRM 288 (569)
T ss_pred hhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-hcCCcceeee
Confidence 0 000 000111123479999999999887 456666554432222344555444332111 111 1112232358
Q ss_pred cCCCHHH-HHHHHHHHHHHCCcEEEeCceeeEEEECCC--C--CeEEEE-e-C--CeEEEcCEEEEcCChHHHHHhhCCC
Q psy893 225 PEGGMGA-VSQALARSAQASGAQLFTSQTVTEITLDSD--K--RASGVV-T-N--GLEIKAKYVLSNTTAKCTLLDLIPK 295 (523)
Q Consensus 225 ~~gG~~~-l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~--~--~~~~v~-~-~--g~~~~ad~vI~a~~~~~~~~~ll~~ 295 (523)
++||... |++.+++.|+++|++|+++++|++|+.+++ + ++++|+ . + ++++.||.||+|++++.+ .+|+++
T Consensus 289 ~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~-~~Llp~ 367 (569)
T PLN02487 289 LKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGI-KRLLPE 367 (569)
T ss_pred cCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHH-HHhCCc
Confidence 9999995 999999999999999999999999999731 2 367777 3 3 346889999999999974 789976
Q ss_pred CCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCC-CCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCe
Q psy893 296 GNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSEN-TVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPM 374 (523)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 374 (523)
..-.....+.+.++.+ .++++|++.++++... +..... .++.. +.+.+++ + .. + .+.-++
T Consensus 368 ~~~~~~~~~~l~~L~~-~pi~tv~L~~d~~v~~---~~~~~~~r~l~~-----~~g~~~~------~-~~--~-~~~~~f 428 (569)
T PLN02487 368 QWREYEFFDNIYKLVG-VPVVTVQLRYNGWVTE---MQDLELSRQLRR-----AAGLDNL------L-YS--A-DADFSC 428 (569)
T ss_pred hhhccHHHhHHhcCCC-eeEEEEEEEecccccc---cccccccccccc-----ccccccc------c-cc--c-CCCcce
Confidence 4111223566777755 4788999999875421 100000 00000 0000100 0 00 0 000011
Q ss_pred EEE-EcCCCCCCCCC-CCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCC-eEEeEecChhhHH
Q psy893 375 IEM-VLPSSLDNTLS-PPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQD-IVGYEILTPPDLE 451 (523)
Q Consensus 375 ~~v-~~~s~~d~~~a-p~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~-i~~~~~~tP~~~~ 451 (523)
+.. ..-+..+ ... .+| +.+.+++. +. +++.+..+++++++++++|.+++|.+++. +....+.. +.
T Consensus 429 ~~di~l~~~~~-~~~~~~g-~~l~~vis--~a-----~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~---~~ 496 (569)
T PLN02487 429 FADLALTSPED-YYKEGEG-SLIQAVLT--PG-----DPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVK---IG 496 (569)
T ss_pred EeeeecCCHHH-HcccCCc-eEEEEEEc--CC-----ccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEE---cc
Confidence 111 1000000 011 123 33444431 11 23444567999999999999999998643 55433331 11
Q ss_pred HhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC--CCCCCc--cHHHHHHHHHHHh
Q psy893 452 KEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVNRLM 521 (523)
Q Consensus 452 ~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~~~~ 521 (523)
+ ++|... +.+ ...|| +.+|+++|||+||||+..+ ..+.+| ||..||+.|++..
T Consensus 497 ~-------at~~~~--pg~-~~~RP-------~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 497 Q-------SLYREA--PGM-DPFRP-------DQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred C-------ceeccC--CCc-cccCC-------CCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 1 122211 111 12467 7899999999999999654 133355 9999999998864
No 13
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.96 E-value=7.2e-28 Score=249.41 Aligned_cols=416 Identities=15% Similarity=0.185 Sum_probs=245.3
Q ss_pred CCChhHHHHHHHHHHc----CCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEee
Q psy893 1 EAGHNGLVSAAYLARA----GLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLT 73 (523)
Q Consensus 1 GaG~~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~ 73 (523)
|||++||+||++|+++ |++|+|||+++++||+++|.+ .+|+.+|.|++++....+ .+++++|++.. +..
T Consensus 9 GaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~-~~~-- 84 (462)
T TIGR00562 9 GGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDLGLEHV-LVS-- 84 (462)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHcCCCcc-ccc--
Confidence 8999999999999999 999999999999999999987 789999999998776655 46667776543 111
Q ss_pred cCCCCcccC-CCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHH
Q psy893 74 RDPRSYTPL-SPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLF 152 (523)
Q Consensus 74 ~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (523)
.+.....+ ... |+.+.++..+.. +..... .....++...+..+....
T Consensus 85 -~~~~~~~~~~~~-----g~~~~~p~~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~~------------- 132 (462)
T TIGR00562 85 -DATGQRYVLVNR-----GKLMPVPTKIAP----FVKTGL---------FSLGGKLRAGMDFIRPAS------------- 132 (462)
T ss_pred -CCCCceEEEECC-----CceecCCCChHH----HhcCCC---------CCchhhHHhhhhhccCCC-------------
Confidence 11100000 010 333333322111 000000 000001110000010000
Q ss_pred hccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCC-CCCCCcchHHHH--HHHH-----------hhcc---
Q psy893 153 TRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAM-VSPHSPSTSYVL--LHHV-----------MGGA--- 215 (523)
Q Consensus 153 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~-----------~~~~--- 215 (523)
. ....|+.+|+.+.+.++..+.++..... +.+ ..+.+.++.+.+ +... ....
T Consensus 133 ---~-------~~d~s~~e~l~~~~g~~~~~~~~~p~~~-~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 201 (462)
T TIGR00562 133 ---P-------GKDESVEEFVRRRFGDEVVENLIEPLLS-GIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLP 201 (462)
T ss_pred ---C-------CCCcCHHHHHHHhcCHHHHHHHHHHHhc-ccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccC
Confidence 0 0125778888888776666665554332 111 233333333221 1100 0000
Q ss_pred ------cC--CCCc-eeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893 216 ------EG--VKGA-WAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA 285 (523)
Q Consensus 216 ------~~--~~g~-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~ 285 (523)
.+ ..+. +..+.||+++|++.|++.+.. ++|+++++|++|..++ +++ .|+ .+|+++.||+||+|+|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~-~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 202 QGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKL--TKVYKGTKVTKLSHRG-SNY-TLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred ccccccccccccCCceEecchhHHHHHHHHHHHhcc--CeEEcCCeEEEEEecC-CcE-EEEECCCcEEEcCEEEECCCH
Confidence 00 0121 346899999999999998852 7899999999999876 554 466 67778999999999999
Q ss_pred HHHHHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhh
Q psy893 286 KCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDAT 365 (523)
Q Consensus 286 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 365 (523)
..+ ..|+++ +++...+.++++.+. ++.++.+.++++. |. .+. .++.++..++ +
T Consensus 278 ~~~-~~ll~~--~~~~~~~~l~~l~~~-~~~~v~l~~~~~~-~~--------~~~---~~~g~l~~~~-~---------- 330 (462)
T TIGR00562 278 KAA-AGLLSE--LSNSASSHLDKIHSP-PVANVNLGFPEGS-VD--------GEL---EGFGFLISRS-S---------- 330 (462)
T ss_pred HHH-HHHhcc--cCHHHHHHHhcCCCC-ceEEEEEEEchHH-cC--------CCC---CceEEEccCC-C----------
Confidence 986 678764 566788889988886 7888999987532 21 011 1233331211 0
Q ss_pred cCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEec
Q psy893 366 QGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEIL 445 (523)
Q Consensus 366 ~g~~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~ 445 (523)
..+.+.+.+.|...|.++|+|+.++++++. ... ..++.+..++++.+.+++.|.++++ +...++...+.
T Consensus 331 -----~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~-g~~----~~~~~~~~~ee~~~~v~~~L~~~~g-i~~~p~~~~v~ 399 (462)
T TIGR00562 331 -----KFAILGCIFTSKLFPNRAPPGKTLLTAYIG-GAT----DESIVDLSENEIINIVLRDLKKVLN-INNEPEMLCVT 399 (462)
T ss_pred -----CCceEEEEEEccccCCcCCCCcEEEEEEeC-CCC----CccccCCCHHHHHHHHHHHHHHHhC-CCCCCcEEEEe
Confidence 013344555666778888999887766653 111 1233344668899999999999984 54434433332
Q ss_pred ChhhHHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHhc
Q psy893 446 TPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR 522 (523)
Q Consensus 446 tP~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~~ 522 (523)
.|.. ..|..++.+ ...+.++ ++ ...++.+|||+||+|. -|.|+++| ||+.+|++|++.+.
T Consensus 400 ---rw~~--a~P~~~~g~-~~~~~~i---~~-------~l~~~~~~l~l~G~~~-~g~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 400 ---RWHR--AIPQYHVGH-DQRLKEA---RE-------LLESAYPGVFLTGNSF-EGVGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred ---Eccc--cCCCCCCCh-HHHHHHH---HH-------HHHhhCCCEEEecccc-CCCcHHHHHHHHHHHHHHHHHhhc
Confidence 2321 222222211 0011111 11 1123457999999997 46789987 99999999998764
No 14
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.96 E-value=4.4e-27 Score=243.17 Aligned_cols=421 Identities=15% Similarity=0.178 Sum_probs=237.8
Q ss_pred CCChhHHHHHHHHHHc------CCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceE
Q psy893 1 EAGHNGLVSAAYLARA------GLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKL 71 (523)
Q Consensus 1 GaG~~GL~aA~~La~~------G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~ 71 (523)
|||++||+||+.|+++ |++|+|||+++++||+++|.+ .+|+.+|.|++++....+ .++++||++.. +.+
T Consensus 8 GaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~-~~~ 85 (463)
T PRK12416 8 GGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNLEEE-MVY 85 (463)
T ss_pred CCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCCccc-eec
Confidence 8999999999999986 379999999999999999997 689999999998765555 56778887643 111
Q ss_pred eecCCCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHH--HHHHHHHHHHhHHHhhhhcCCCChhhHHHH
Q psy893 72 LTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFE--KYDHHIEEITNLLDPLFDIAPHDFGNLLMY 149 (523)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (523)
.. ....+. +.. +....++.+. +..+ |.....+. .++....++ +.+..++.... ..
T Consensus 86 ~~-~~~~~~-~~~------~~~~~~p~~~------~~~~-p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~------ 142 (463)
T PRK12416 86 NE-TGISYI-YSD------NTLHPIPSDT------IFGI-PMSVESLFSSTLVSTKGKI-VALKDFITKNK-EF------ 142 (463)
T ss_pred CC-CCceEE-EEC------CeEEECCCCC------eecC-CCChHHhhcCCcCCHHHHH-HhhhhhccCCC-CC------
Confidence 11 111110 001 2222222110 0000 00000000 000000010 01111111000 00
Q ss_pred HHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh-ccCCCCCCCcchHHHH---HHHH------hhcc----
Q psy893 150 NLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL-IGAMVSPHSPSTSYVL---LHHV------MGGA---- 215 (523)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~------~~~~---- 215 (523)
....|+.+|+++.+.++..+.++..... +.. ..+.+.+....+ .... ...+
T Consensus 143 --------------~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~-~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~ 207 (463)
T PRK12416 143 --------------TKDTSLALFLESFLGKELVERQIAPVLSGVYS-GKLNELTMASTLPYLLDYKNKYGSIIKGFEENK 207 (463)
T ss_pred --------------CCCCCHHHHHHHhcCHHHHHHHHHHHhccccc-CCcccccHHHhhHHHHHHHHhcCcHHHHHHHhh
Confidence 0135788888888776666666554432 111 234444332211 1110 0000
Q ss_pred c----CCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHH
Q psy893 216 E----GVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLL 290 (523)
Q Consensus 216 ~----~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~ 290 (523)
. .....+.+++||+++|+++|++.+++ ++|++|++|++|+.++ +++ .|+ .+|+++.||+||+|+|+..+ .
T Consensus 208 ~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~-~v~~~~g~~~~ad~VI~a~p~~~~-~ 282 (463)
T PRK12416 208 KQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQG-DRY-EISFANHESIQADYVVLAAPHDIA-E 282 (463)
T ss_pred hccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcC-CEE-EEEECCCCEEEeCEEEECCCHHHH-H
Confidence 0 01112347899999999999998865 6899999999999887 554 466 67778999999999998885 6
Q ss_pred hhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCC
Q psy893 291 DLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPS 370 (523)
Q Consensus 291 ~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~ 370 (523)
+|++++. ....++++.+. ++.+|+++++++... . +. .+..++.+++ .
T Consensus 283 ~ll~~~~----l~~~~~~~~~~-~~~~v~l~~~~~~~~--~---------~~-~g~G~l~~~~-------------~--- 329 (463)
T PRK12416 283 TLLQSNE----LNEQFHTFKNS-SLISIYLGFDILDEQ--L---------PA-DGTGFIVTEN-------------S--- 329 (463)
T ss_pred hhcCCcc----hhHHHhcCCCC-ceEEEEEEechhhcC--C---------CC-CceEEEeeCC-------------C---
Confidence 7876533 33455666654 889999999864311 0 11 1122331221 0
Q ss_pred CCCeEEEEcCCCCCCCCCCCCceEEEEEecc-cccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhh
Q psy893 371 TRPMIEMVLPSSLDNTLSPPGHHVCLLFTQF-TPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPD 449 (523)
Q Consensus 371 ~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~-~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~ 449 (523)
......+.++|...+..+|++..++.+++.. .+. .+++.+..++++.+.++++|++++ ++..+.+...+. .
T Consensus 330 ~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~dee~~~~~~~~L~~~l-G~~~~p~~~~v~---~ 401 (463)
T PRK12416 330 DLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPV----YETIKNYSEEELVRVALYDIEKSL-GIKGEPEVVEVT---N 401 (463)
T ss_pred CCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCC----chhhhcCCHHHHHHHHHHHHHHHh-CCCCCceEEEEE---E
Confidence 0012234455555566666666655555421 111 112333356899999999999998 454444443332 2
Q ss_pred HHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHh
Q psy893 450 LEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLM 521 (523)
Q Consensus 450 ~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~ 521 (523)
|.. ..|++.+.+.. ...++ ++ ..+.+.+|||++|++. -|.|+++| ||+.||++|++.+
T Consensus 402 W~~--a~P~y~~~~~~-~~~~~---~~-------~l~~~~~~l~~aG~~~-~g~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 402 WKD--LMPKYHLEHNQ-AVQSL---QE-------KMMNLYPNIYLAGASY-YGVGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred ccc--cCCCcCcCHHH-HHHHH---HH-------HHHhhCCCeEEecccc-ccccHHHHHHHHHHHHHHHHHHh
Confidence 332 23443322211 11111 11 1223458999999996 46789987 9999999999875
No 15
>PRK07208 hypothetical protein; Provisional
Probab=99.95 E-value=7.7e-26 Score=235.01 Aligned_cols=414 Identities=15% Similarity=0.172 Sum_probs=236.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR 77 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~ 77 (523)
|||++||+||++|+++|++|+|+|+++++||++.+.. .+|+.+|.|+|++....+ .++++++..+. + ......
T Consensus 11 GaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~-~--~~~~~~ 86 (479)
T PRK07208 11 GAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDD-F--LLRPRL 86 (479)
T ss_pred CcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCc-c--cccccc
Confidence 8999999999999999999999999999999999987 689999999988655554 45666654221 1 111111
Q ss_pred CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcccc
Q psy893 78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGE 157 (523)
Q Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (523)
.. .++. |+.+.++.+.. ..+..+.. ...+... ..++...... .
T Consensus 87 ~~-~~~~------g~~~~~p~~~~---~~l~~~~~---------~~~~~~~----~~~~~~~~~~------------~-- 129 (479)
T PRK07208 87 SR-IYYR------GKFFDYPLKAF---DALKNLGL---------WRTAKCG----ASYLKARLRP------------R-- 129 (479)
T ss_pred ce-EEEC------CEEecCCcchh---HHHHhCCH---------hHHHHHH----HHHHHHhcCC------------C--
Confidence 00 0111 34333332211 11111100 0000000 0111100000 0
Q ss_pred HHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh-ccCCCCCCCcchHHHH-----------HHHHhhc-----------
Q psy893 158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL-IGAMVSPHSPSTSYVL-----------LHHVMGG----------- 214 (523)
Q Consensus 158 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~----------- 214 (523)
....|+.+|+.+.+.++..+.++...+. +.. ..|.+.+..+.+ +...+..
T Consensus 130 ------~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (479)
T PRK07208 130 ------KEEDSFEDWVINRFGRRLYSTFFKGYTEKVWG-VPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEV 202 (479)
T ss_pred ------CCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhC-CChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCc
Confidence 0125778888877777666666655432 111 344444333211 1000100
Q ss_pred ccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCC-eEEEE-e--CCe--EEEcCEEEEcCChHHH
Q psy893 215 AEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKR-ASGVV-T--NGL--EIKAKYVLSNTTAKCT 288 (523)
Q Consensus 215 ~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~-~~~v~-~--~g~--~~~ad~vI~a~~~~~~ 288 (523)
.......+.+|+||++.|+++|++.+++.|++|++|++|++|..++ ++ ++.+. . +|+ ++.||+||+|+|+..+
T Consensus 203 ~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l 281 (479)
T PRK07208 203 ETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTADQVISSMPLREL 281 (479)
T ss_pred cccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHH
Confidence 0001123458899999999999999999999999999999999987 44 43444 2 353 6899999999999986
Q ss_pred HHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCC
Q psy893 289 LLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGI 368 (523)
Q Consensus 289 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~ 368 (523)
. +++.+ .+++...+.++++.+. ++.+++++++++.. .+.+ ++++ .+. +
T Consensus 282 ~-~~l~~-~~~~~~~~~~~~l~~~-~~~~v~l~~~~~~~------------~~~~--~~~~-~~~-------------~- 329 (479)
T PRK07208 282 V-AALDP-PPPPEVRAAAAGLRYR-DFITVGLLVKELNL------------FPDN--WIYI-HDP-------------D- 329 (479)
T ss_pred H-HhcCC-CCCHHHHHHHhCCCcc-eeEEEEEEecCCCC------------CCCc--eEEe-cCC-------------C-
Confidence 4 56653 3666777778888776 68899999987531 1222 5555 221 0
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-CCCeEEeEecCh
Q psy893 369 PSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGF-TQDIVGYEILTP 447 (523)
Q Consensus 369 ~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~-~~~i~~~~~~tP 447 (523)
.+.-.+..++..+|..+|+|+++ .+...+..+ ....-| +..++++.++++++|.++.+ + .+.++...+..
T Consensus 330 ---~~~~r~~~~~~~~~~~~p~g~~~-~l~~~~~~~--~~~~~~-~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r- 400 (479)
T PRK07208 330 ---VKVGRLQNFNNWSPYLVPDGRDT-WLGLEYFCF--EGDDLW-NMSDEDLIALAIQELARLGL-IRPADVEDGFVVR- 400 (479)
T ss_pred ---CccceecccccCCcccCCCCCce-EEEEEEEcc--CCCccc-cCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEE-
Confidence 01112344556678889999862 222111111 111234 23568899999999999744 3 44555443321
Q ss_pred hhHHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC-CCCCCc--cHHHHHHHHHHH
Q psy893 448 PDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG-GGVCGA--PGYIAAQMVNRL 520 (523)
Q Consensus 448 ~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg-~g~~~a--sG~~aA~~i~~~ 520 (523)
++. ..|.....+. ...... + ...++.+|||++|...... ..+.+| ||..||+.|++.
T Consensus 401 --~~~--a~P~y~~~~~-~~~~~~---~--------~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 401 --VPK--AYPVYDGTYE-RNVEII---R--------DLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred --ecC--cccCCCchHH-HHHHHH---H--------HHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcC
Confidence 211 1111111110 111111 1 1124679999999765222 234455 999999998764
No 16
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.95 E-value=1.4e-25 Score=229.78 Aligned_cols=400 Identities=18% Similarity=0.183 Sum_probs=219.3
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCcceeeecccCCce--eccchhhhhhhhh---hhhccccccccCceEeecCCCCcccC
Q psy893 8 VSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQ--FSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPRSYTPL 82 (523)
Q Consensus 8 ~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~--~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~~~~~~ 82 (523)
+||++|+++|++|+|||+++++||+++|++ .+||. +|.|++++....+ +++++||++.. +.. ... .+...
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~-~~~-~~~--~~~~~ 75 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPR-LQG-PRL--PLPFY 75 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccHHHHHHHHHhCCchh-hhc-ccC--Cccee
Confidence 589999999999999999999999999997 67654 9999988765444 57777877643 211 111 11111
Q ss_pred CCCcccCCCCceeecC----CHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhccccH
Q psy893 83 SPDKWTNKAKSLTLGL----DPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEM 158 (523)
Q Consensus 83 ~~~~~~~~g~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (523)
..+ +....+.. .+......+..+..-......++...+..+. ... .
T Consensus 76 ~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~---------------~--- 125 (419)
T TIGR03467 76 DPG-----GRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR-------RTR---------------F--- 125 (419)
T ss_pred cCC-----CCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-------hcC---------------c---
Confidence 110 11101110 0111111111111111111111111111100 000 0
Q ss_pred HHHHHHHhhcHHHHHHhhcCChHHHHHH-hhhhhccCCCCCCCcchHHHHHHH--HhhcccCCCCceeecCCCHHHHH-H
Q psy893 159 KDVYSLLTCSAFSILNDWFESEPLKATL-LTDGLIGAMVSPHSPSTSYVLLHH--VMGGAEGVKGAWAYPEGGMGAVS-Q 234 (523)
Q Consensus 159 ~~~~~~~~~s~~~~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~gG~~~l~-~ 234 (523)
......|+.+|+++++.++.+...+ ...........|.+.++.+.+... .+.......+ +.+|+||++.++ +
T Consensus 126 ---~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~gG~~~~~~~ 201 (419)
T TIGR03467 126 ---RALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASD-LLLPRVPLSELFPE 201 (419)
T ss_pred ---cccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcce-eeeeCCCHHHHHHH
Confidence 0112468899999887666555533 322221111345554443332211 0110011122 348999987766 5
Q ss_pred HHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCC
Q psy893 235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYAS 313 (523)
Q Consensus 235 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 313 (523)
.|++.+++.|++|++|++|++|..++ ++++.+. .+|+++.||+||+|+|+..+ .+|++++ ...+.++++.+.
T Consensus 202 ~l~~~l~~~g~~i~~~~~V~~i~~~~-~~~~~~~~~~g~~~~~d~vi~a~p~~~~-~~ll~~~----~~~~~l~~~~~~- 274 (419)
T TIGR03467 202 PARRWLDSRGGEVRLGTRVRSIEANA-GGIRALVLSGGETLPADAVVLAVPPRHA-ASLLPGE----DLGALLTALGYS- 274 (419)
T ss_pred HHHHHHHHcCCEEEcCCeeeEEEEcC-CcceEEEecCCccccCCEEEEcCCHHHH-HHhCCCc----hHHHHHhhcCCc-
Confidence 59999999999999999999999987 6654333 57778999999999999986 6787642 355677888776
Q ss_pred CeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCce
Q psy893 314 PVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHH 393 (523)
Q Consensus 314 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~ 393 (523)
++.++++.++++. |. + .. + ..+. + .+..++...+ ...++ ..
T Consensus 275 ~~~~v~l~~~~~~-~~--~-------~~-~--~~~~--~-------------------~~~~~~~~~~----~~~~~-~~ 315 (419)
T TIGR03467 275 PITTVHLRLDRAV-RL--P-------AP-M--VGLV--G-------------------GLAQWLFDRG----QLAGE-PG 315 (419)
T ss_pred ceEEEEEEeCCCc-CC--C-------CC-e--eeec--C-------------------CceeEEEECC----cCCCC-CC
Confidence 6779999999753 21 0 11 1 1111 1 0111222111 11122 22
Q ss_pred EEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-CCeEEeEecChhhHHHhcCCCCCccccCcccccccc
Q psy893 394 VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLL 472 (523)
Q Consensus 394 ~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~ 472 (523)
.+.+++.. ..++.+..++++.+.+++.|++++|... ..++...+. ....+ .|.......
T Consensus 316 ~~~~~~~~-------~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~g~~--- 375 (419)
T TIGR03467 316 YLAVVISA-------ARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVI---------KEKRA-TFAATPGLN--- 375 (419)
T ss_pred EEEEEEec-------chhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEE---------EccCC-ccccCCccc---
Confidence 33333221 1123334568999999999999998653 222222211 11111 121111111
Q ss_pred cCCCCCCCCCCCCCCCCCCeEecCCCCCCC--CCCCCc--cHHHHHHHHHH
Q psy893 473 FNRPLPIQGPSSPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVNR 519 (523)
Q Consensus 473 ~~rp~~~~~~~~~~t~i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~~ 519 (523)
..+| ...+|++|||||||++++| +.+.|| ||..||++|++
T Consensus 376 ~~~~-------~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 376 RLRP-------GARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred ccCC-------CCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 1244 4467899999999999764 123356 99999999874
No 17
>PLN02576 protoporphyrinogen oxidase
Probab=99.95 E-value=1.9e-25 Score=233.16 Aligned_cols=426 Identities=17% Similarity=0.155 Sum_probs=237.8
Q ss_pred CCChhHHHHHHHHHHc-CCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhhhh---hccccccccCceEeecCC
Q psy893 1 EAGHNGLVSAAYLARA-GLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHI---YKDLELKKHGLKLLTRDP 76 (523)
Q Consensus 1 GaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~~~---~~~lgl~~~g~~~~~~~~ 76 (523)
|||++||+||++|+++ |++|+|||+++++||+++|.+ .+||.+|.|++++....+.+ +++ ++++. +.+. ++
T Consensus 19 GaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~~-~~~~--~~ 93 (496)
T PLN02576 19 GAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDS-GLRDD-LVFP--DP 93 (496)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHc-CChhh-eecC--CC
Confidence 8999999999999999 999999999999999999997 68999999999876555533 333 44432 2121 11
Q ss_pred CCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhccc
Q psy893 77 RSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRG 156 (523)
Q Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (523)
.....++. +|+.+.++.++..+ + .. . +.....++......+....+..
T Consensus 94 ~~~~~~~~-----~g~~~~~p~~~~~~---~-~~---~------~~~~~~~~~~~~~~~~~~~~~~-------------- 141 (496)
T PLN02576 94 QAPRYVVW-----NGKLRPLPSNPIDL---P-TF---D------LLSAPGKIRAGLGAFGWKRPPP-------------- 141 (496)
T ss_pred CceEEEEE-----CCEEEEcCCChHHh---c-Cc---C------cCChhHHHHHhHHHhhccCCCC--------------
Confidence 11111111 15544444433211 0 00 0 0111111111000000000000
Q ss_pred cHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCC-CCCCCcchHHHH--HHHH-----------h-hccc-----
Q psy893 157 EMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAM-VSPHSPSTSYVL--LHHV-----------M-GGAE----- 216 (523)
Q Consensus 157 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~-----------~-~~~~----- 216 (523)
. ....|+.+|+.+.|.++..+.++..... +.+ ..+.+.++...+ ++.+ + ....
T Consensus 142 ~------~~~~sv~~~l~~~~g~~~~~~~~~p~~~-~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~ 214 (496)
T PLN02576 142 P------GREESVGEFVRRHLGDEVFERLIDPFVS-GVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNP 214 (496)
T ss_pred C------CCCCcHHHHHHHhcCHHHHHHHHHHHhC-ceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccc
Confidence 0 0135888999888887777776664432 111 234433332221 1110 0 0000
Q ss_pred -----------CCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCC-eEEEcCEEEE
Q psy893 217 -----------GVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNG-LEIKAKYVLS 281 (523)
Q Consensus 217 -----------~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g-~~~~ad~vI~ 281 (523)
........++||++.|+++|++.+.+ ++|++|++|++|+..+ ++.+.|+ .+| +++.||+||+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~-~~~~~v~~~~~~g~~~~~ad~VI~ 291 (496)
T PLN02576 215 KPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGK--DKVKLNWKVLSLSKND-DGGYSLTYDTPEGKVNVTAKAVVM 291 (496)
T ss_pred cccccccccccccCCeeEeccchHHHHHHHHHHhhCc--CcEEcCCEEEEEEECC-CCcEEEEEecCCCceeEEeCEEEE
Confidence 00111236799999999999986621 6899999999999887 5412343 345 3689999999
Q ss_pred cCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHH
Q psy893 282 NTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAY 361 (523)
Q Consensus 282 a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 361 (523)
|+|+..+ ..|+++ .+++..+.++++.|. ++.+|++.++++. |.. ......+. .+..++....
T Consensus 292 a~P~~~l-~~ll~~--~~~~~~~~l~~~~~~-~~~~v~l~~~~~~-~~~--~~~~~~~~---~~~g~l~~~~-------- 353 (496)
T PLN02576 292 TAPLYVV-SEMLRP--KSPAAADALPEFYYP-PVAAVTTSYPKEA-VKR--ERLIDGPL---EGFGQLHPRK-------- 353 (496)
T ss_pred CCCHHHH-HHHhcc--cCHHHHHHhccCCCC-ceEEEEEEEchHH-ccc--ccccCCCC---CceEEEccCC--------
Confidence 9999985 577764 456678888888876 6788899988642 210 00000010 1111221110
Q ss_pred HHhhcCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-CCeE
Q psy893 362 QDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIV 440 (523)
Q Consensus 362 ~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~ 440 (523)
...+.+.+.+.|...|.++|+++.+++.++. ... ...+.+..++++.+.+++.|.++++.-. ...+
T Consensus 354 --------~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~-~~~----~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~ 420 (496)
T PLN02576 354 --------QGVKTLGTIYSSSLFPDRAPEGRVLLLNYIG-GSR----NTGIASASEEELVEAVDRDLRKLLLKPGAPPPK 420 (496)
T ss_pred --------CCCceEEEEeecCcCCCCCCCCCEEEEEEEC-CCC----CcccccCCHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 0113444555667778888888776665543 111 1233344678999999999999986321 1222
Q ss_pred EeEecChhhHHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCC-CCCCeEecCCCCCCCCCCCCc--cHHHHHHHH
Q psy893 441 GYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFT-LIPHLLLCGSGAHPGGGVCGA--PGYIAAQMV 517 (523)
Q Consensus 441 ~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t-~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i 517 (523)
...+. .|.. ..|...+.+.. ...++ .++ ... ..+|||+||+|+. |.|+++| ||+.||++|
T Consensus 421 ~~~~~---~w~~--a~P~~~~g~~~-~~~~~--~~~--------l~~~~~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i 483 (496)
T PLN02576 421 VVGVR---VWPK--AIPQYLLGHLD-VLEAA--EKM--------EKDLGLPGLFLGGNYRG-GVALGKCVESGYEAADLV 483 (496)
T ss_pred EEEEe---EcCc--ccCCCCcCHHH-HHHHH--HHH--------HHhcCCCCEEEeccccC-CccHHHHHHHHHHHHHHH
Confidence 22111 2221 12222221100 01000 000 011 1279999999995 6789987 999999999
Q ss_pred HHHh
Q psy893 518 NRLM 521 (523)
Q Consensus 518 ~~~~ 521 (523)
++.+
T Consensus 484 ~~~~ 487 (496)
T PLN02576 484 ISYL 487 (496)
T ss_pred HHHH
Confidence 9865
No 18
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.94 E-value=6.2e-27 Score=241.18 Aligned_cols=238 Identities=21% Similarity=0.297 Sum_probs=138.4
Q ss_pred ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHH-hhCCCCCCCHH
Q psy893 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLL-DLIPKGNLDER 301 (523)
Q Consensus 224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~-~ll~~~~~~~~ 301 (523)
...|+...+...+.+ ..|++|++|++|++|..++ +++. |. .+|++++||+||+|+|+..+.. .+.+ .++..
T Consensus 206 ~~~g~~~~~~~~~~~---~~g~~i~l~~~V~~I~~~~-~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p--~l~~~ 278 (450)
T PF01593_consen 206 VGMGGLSLALALAAE---ELGGEIRLNTPVTRIERED-GGVT-VTTEDGETIEADAVISAVPPSVLKNILLLP--PLPED 278 (450)
T ss_dssp EETTTTHHHHHHHHH---HHGGGEESSEEEEEEEEES-SEEE-EEETTSSEEEESEEEE-S-HHHHHTSEEES--TSHHH
T ss_pred ecccchhHHHHHHHh---hcCceeecCCcceeccccc-cccc-cccccceEEecceeeecCchhhhhhhhhcc--ccccc
Confidence 445555554444444 5577999999999999998 7765 55 7888999999999999999643 3333 36665
Q ss_pred HHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCC
Q psy893 302 TTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPS 381 (523)
Q Consensus 302 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s 381 (523)
..+.++++.+. +..+|++.++.+. |.. .....+.+.- +. ..+..++..++
T Consensus 279 ~~~a~~~~~~~-~~~~v~l~~~~~~-~~~---------~~~~~~~~~~--~~-----------------~~~~~~~~~~~ 328 (450)
T PF01593_consen 279 KRRAIENLPYS-SVSKVFLGFDRPF-WPP---------DIDFFGILYS--DG-----------------FSPIGYVSDPS 328 (450)
T ss_dssp HHHHHHTEEEE-EEEEEEEEESSGG-GGS---------TTTESEEEEE--SS-----------------TSSEEEEEEEC
T ss_pred ccccccccccC-cceeEEEeeeccc-ccc---------cccccceecc--cC-----------------ccccccccccc
Confidence 66777777765 6779999999753 210 0011122222 11 12444555555
Q ss_pred CCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCcc
Q psy893 382 SLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNI 461 (523)
Q Consensus 382 ~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~ 461 (523)
..++. ++..++..++. .+.. ..|.+..++++.+.++++|++++|. .......++. -..|.+. ..+.|+.
T Consensus 329 ~~~~~---~~~~~l~~~~~-~~~~----~~~~~~~~e~~~~~~~~~L~~~~~~-~~~~~~~~~~-~~~w~~~-~~~~~~~ 397 (450)
T PF01593_consen 329 KFPGR---PGGGVLTSYVG-GPDA----PEWDDLSDEEILERVLDDLRKILPG-ASIPDPIDIT-VTRWSRD-PYPRGSY 397 (450)
T ss_dssp CTTSC---TTSEEEEEEEE-HHHH----HHHTTSCHHHHHHHHHHHHHHHHTT-GGGGEESEEE-EEECTTS-TTTSSSC
T ss_pred cCccc---ccCCcceeeee-cccc----chhcccchhhhHHHHHHHhhhcccc-cccccccccc-ccccccc-ccccccc
Confidence 44333 33444444432 2221 1234456788999999999999985 1111111100 1123221 1122322
Q ss_pred ccCcccccccccCCCCCCCCCCCCCCCC-CCeEecCCCCCCC--CCCCCc--cHHHHHHHHH
Q psy893 462 FHGALSLNQLLFNRPLPIQGPSSPFTLI-PHLLLCGSGAHPG--GGVCGA--PGYIAAQMVN 518 (523)
Q Consensus 462 ~g~~~~~~q~~~~rp~~~~~~~~~~t~i-~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~ 518 (523)
........ ...+| ..++|+ +||||||++++++ +|+++| ||++||++||
T Consensus 398 ~~~~~~~~--~~~~~-------~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 398 SYFPPGQS--SQFRP-------ALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp ECHCTTHH--HHHHH-------HHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccc--ccccc-------cccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 11111111 01223 446677 7999999999987 788887 9999999986
No 19
>PLN02268 probable polyamine oxidase
Probab=99.94 E-value=2.6e-24 Score=220.76 Aligned_cols=407 Identities=17% Similarity=0.146 Sum_probs=215.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhh--h-h--hhhccccccccCceEeecC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLL--R-P--HIYKDLELKKHGLKLLTRD 75 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~--~-~--~~~~~lgl~~~g~~~~~~~ 75 (523)
|||++||+||+.|.++|++|+|||+++++||+++|.+ .+|+.+|.|++|++.. . | .+++++|++ ....+
T Consensus 7 GaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~-----~~~~~ 80 (435)
T PLN02268 7 GGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRLGLP-----LYRTS 80 (435)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHhCCc-----eEecc
Confidence 8999999999999999999999999999999999976 6799999999987542 2 2 456667653 33222
Q ss_pred CCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcc
Q psy893 76 PRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR 155 (523)
Q Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (523)
... ...+.. +...+.+..+ ....+.+.. ...+.....++.+.........
T Consensus 81 ~~~-~~~~~~----~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---------------- 130 (435)
T PLN02268 81 GDN-SVLYDH----DLESYALFDM------DGNQVPQEL---VTKVGETFERILEETEKVRDEH---------------- 130 (435)
T ss_pred CCc-cccccc----cccccceecC------CCCCCCHHH---HHHHHHHHHHHHHHHHHHHhcc----------------
Confidence 110 111110 0010110100 000111111 1111111111111111100000
Q ss_pred ccHHHHHHHHhhcHHHHHHhhcCCh-------HHHHHHhhhh--hccCC-CCCCCcchHHHHHHHHhhcccCCCCceeec
Q psy893 156 GEMKDVYSLLTCSAFSILNDWFESE-------PLKATLLTDG--LIGAM-VSPHSPSTSYVLLHHVMGGAEGVKGAWAYP 225 (523)
Q Consensus 156 ~~~~~~~~~~~~s~~~~l~~~~~~~-------~l~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 225 (523)
....|+.+++++++... .-+.++.... ..+.+ ..+.+.+... . .......|...++
T Consensus 131 --------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~----~--~~~~~~~g~~~~~ 196 (435)
T PLN02268 131 --------EEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKS----W--DQEELLEGGHGLM 196 (435)
T ss_pred --------CCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhh----c--CCccccCCCceee
Confidence 01134445444433211 1122221110 00101 1232222111 0 0000112222367
Q ss_pred CCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC-CCCCCCHHHH
Q psy893 226 EGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI-PKGNLDERTT 303 (523)
Q Consensus 226 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll-~~~~~~~~~~ 303 (523)
.+|++.++++|.+ +++|++|++|++|...+ +++ .|+ .+|+++.||+||+|+|+..+...++ ..+.+|+...
T Consensus 197 ~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~ 269 (435)
T PLN02268 197 VRGYDPVINTLAK-----GLDIRLNHRVTKIVRRY-NGV-KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKE 269 (435)
T ss_pred cCCHHHHHHHHhc-----cCceeCCCeeEEEEEcC-CcE-EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHH
Confidence 8899999999876 55799999999999887 554 466 7787899999999999998522222 2356888888
Q ss_pred HHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCC
Q psy893 304 QAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSL 383 (523)
Q Consensus 304 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~ 383 (523)
+.++++.+. ...++++.++++ .|. .... .-.+ .++ .....+... .
T Consensus 270 ~ai~~~~~g-~~~Kv~l~f~~~-fw~----------~~~~--~g~~-~~~-----------------~~~~~~~~~---~ 314 (435)
T PLN02268 270 EAISDLGVG-IENKIALHFDSV-FWP----------NVEF--LGVV-APT-----------------SYGCSYFLN---L 314 (435)
T ss_pred HHHHhCCcc-ceeEEEEEeCCC-CCC----------CCce--eecc-CCC-----------------CCCceEEEe---c
Confidence 888988775 688999999974 231 0000 1111 110 001111111 1
Q ss_pred CCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCcccc
Q psy893 384 DNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFH 463 (523)
Q Consensus 384 d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g 463 (523)
. .+.|+.++.+++. .+. ..++.+...+++.+.+++.|.+++|...+.+.. .+ ..|... ....|+...
T Consensus 315 --~-~~~g~~~l~~~~~-g~~----a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~-~~---~~W~~d-p~~~G~~~~ 381 (435)
T PLN02268 315 --H-KATGHPVLVYMPA-GRL----ARDIEKLSDEAAANFAMSQLKKMLPDATEPVQY-LV---SRWGSD-PNSLGCYSY 381 (435)
T ss_pred --c-cCCCCCEEEEEec-cHH----HHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEE-Ee---cccCCC-CCCCccCCC
Confidence 1 1245666655542 111 123334456889999999999999854332221 11 134322 122333211
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC-C-CCCCc--cHHHHHHHHHHHh
Q psy893 464 GALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG-G-GVCGA--PGYIAAQMVNRLM 521 (523)
Q Consensus 464 ~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg-~-g~~~a--sG~~aA~~i~~~~ 521 (523)
. .+.+.....+ ..+.|+.+|||||+.+... . .+.|| ||.+||++|++.|
T Consensus 382 ~--~~g~~~~~~~-------~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 382 D--LVGKPHDLYE-------RLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred C--CCCCCHHHHH-------HHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 1 1111100111 3456788999999998542 2 35577 9999999999765
No 20
>PLN02529 lysine-specific histone demethylase 1
Probab=99.92 E-value=2.1e-22 Score=212.07 Aligned_cols=410 Identities=16% Similarity=0.141 Sum_probs=210.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeeccc-CC--ceeccchhhhhhhhh----hhhccccccccCceEee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEII-PG--FQFSRASYLLSLLRP----HIYKDLELKKHGLKLLT 73 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~-~G--~~~d~g~~~~~~~~~----~~~~~lgl~~~g~~~~~ 73 (523)
|||++||+||..|+++|++|+|||+++++||++.+.... +| +.+|.|++|+.+... .+.++++++ ...
T Consensus 167 GaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~-----~~~ 241 (738)
T PLN02529 167 GAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIP-----LHK 241 (738)
T ss_pred CcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCC-----ccc
Confidence 899999999999999999999999999999999998632 23 478999999765433 344555543 222
Q ss_pred cCCCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHh
Q psy893 74 RDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFT 153 (523)
Q Consensus 74 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (523)
.++. +..+.. +|..+....+. .+. ..+.++++.+..+...+. ...
T Consensus 242 ~~~~-~~~~~~-----~G~~v~~~~~~-----~~~-------~~~~~~l~~~~~l~~~~~----~~~------------- 286 (738)
T PLN02529 242 VRDN-CPLYKP-----DGALVDKEIDS-----NIE-------FIFNKLLDKVTELRQIMG----GFA------------- 286 (738)
T ss_pred cCCC-ceEEeC-----CCcCcchhhhh-----hHH-------HHHHHHHHHHHHHHHhcc----cCc-------------
Confidence 2221 111111 14333211110 000 011111222111111110 000
Q ss_pred ccccHHHHHHHHhhcHHHHHHhhc------CChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCC
Q psy893 154 RRGEMKDVYSLLTCSAFSILNDWF------ESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEG 227 (523)
Q Consensus 154 ~~~~~~~~~~~~~~s~~~~l~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 227 (523)
...|+.+++++.. .++.-+.++........+..+... ..+++.++.-.......|....+.|
T Consensus 287 -----------~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~-s~LSl~~~~~~~~~e~~G~~~~i~G 354 (738)
T PLN02529 287 -----------NDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCL-SDLSAAYWDQDDPYEMGGDHCFLAG 354 (738)
T ss_pred -----------cCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCCh-HHhhhhHhhhccccccCCceEEECC
Confidence 0123333333221 112222233211100001112111 1222222111000112333447899
Q ss_pred CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHH-hhCCCCCCCHHHHHHH
Q psy893 228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLL-DLIPKGNLDERTTQAV 306 (523)
Q Consensus 228 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~-~ll~~~~~~~~~~~~~ 306 (523)
|+++|+++|++. ..|++|++|++|..++ +++ .|+.+++++.||+||+|+|+..+.. .+...+.+|+...+.+
T Consensus 355 G~~~Li~aLA~~-----L~IrLnt~V~~I~~~~-dGV-tV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI 427 (738)
T PLN02529 355 GNWRLINALCEG-----VPIFYGKTVDTIKYGN-DGV-EVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAI 427 (738)
T ss_pred cHHHHHHHHHhc-----CCEEcCCceeEEEEcC-CeE-EEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHH
Confidence 999999999873 4599999999999987 544 3555666899999999999998532 2323446888888999
Q ss_pred hcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCC
Q psy893 307 QSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNT 386 (523)
Q Consensus 307 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~ 386 (523)
+++.+. ++.+|++.++++ .|.. .. . ..-++ .++. .....+++. .+. .
T Consensus 428 ~rL~yG-~v~KV~L~F~~~-FW~~--------~~--~-~fG~l-~~~~---------------~~~g~~~~~-~~~---~ 474 (738)
T PLN02529 428 DRLGFG-LLNKVAMVFPSV-FWGE--------EL--D-TFGCL-NESS---------------NKRGEFFLF-YGY---H 474 (738)
T ss_pred HcCCCc-eeEEEEEEeCCc-cccC--------CC--C-ceEEE-eccC---------------CCCceEEEE-ecC---C
Confidence 999886 789999999864 3410 00 1 11122 1110 011112221 111 1
Q ss_pred CCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC--CC-CCeEEeEecChhhHHHhcCCCCCcccc
Q psy893 387 LSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPG--FT-QDIVGYEILTPPDLEKEFGLTGGNIFH 463 (523)
Q Consensus 387 ~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~--~~-~~i~~~~~~tP~~~~~~~~~~~G~~~g 463 (523)
. +.|..++.+++. .+. ...+.....+++.+.+++.|.++++. .. ...+...+ ..|... ....|+...
T Consensus 475 ~-~~ggpvLvafv~-G~~----A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~---t~W~~D-P~s~GsYS~ 544 (738)
T PLN02529 475 T-VSGGPALVALVA-GEA----AQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTIC---TRWGSD-PLSYGSYSH 544 (738)
T ss_pred C-CCCCCEEEEEEC-chh----hHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEE---ccCCcC-CCCCCCccc
Confidence 1 123344555542 111 11233345578899999999998842 21 01111111 133322 122343211
Q ss_pred CcccccccccCCCCCCCCCCCCCCC-CCCeEecCCCCCCC--CCCCCc--cHHHHHHHHHHHh
Q psy893 464 GALSLNQLLFNRPLPIQGPSSPFTL-IPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVNRLM 521 (523)
Q Consensus 464 ~~~~~~q~~~~rp~~~~~~~~~~t~-i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~~~~ 521 (523)
.. +.+...... ....| .++|||||+++..+ +-+.|| ||.+||++|++.+
T Consensus 545 ~~--~g~~~~d~~-------~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l 598 (738)
T PLN02529 545 VR--VQSSGSDYD-------ILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVA 598 (738)
T ss_pred CC--CCCchhHHH-------HHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHH
Confidence 11 000000000 11223 46899999998643 234577 9999999999865
No 21
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.91 E-value=6.5e-22 Score=209.21 Aligned_cols=266 Identities=19% Similarity=0.201 Sum_probs=149.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCc----eeccchhhhhhhh--h--hhhccccccccCceEe
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGF----QFSRASYLLSLLR--P--HIYKDLELKKHGLKLL 72 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~----~~d~g~~~~~~~~--~--~~~~~lgl~~~g~~~~ 72 (523)
|||++||+||+.|++.|++|+|+|+++++||++.+.. .+|+ .+|.|++|+.... | .+++++|++. .
T Consensus 245 GaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~-~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~-----~ 318 (808)
T PLN02328 245 GAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMK-MKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPL-----H 318 (808)
T ss_pred CcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccc-cCCCCcceeccCCceeecCCCccHHHHHHHHcCCce-----E
Confidence 8999999999999999999999999999999999887 4443 5799988876543 2 4667776542 2
Q ss_pred ecCCCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHH
Q psy893 73 TRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLF 152 (523)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (523)
..+. .+..+..+ |+.+....+ ..+ ...+.++++...++.....+.....
T Consensus 319 ~~~~-~~~~~~~d-----G~~~~~~~~-----~~v-------~~~f~~lL~~~~klr~~~~~~~~~~------------- 367 (808)
T PLN02328 319 KVRD-ICPLYLPD-----GKAVDAEID-----SKI-------EASFNKLLDRVCKLRQAMIEEVKSV------------- 367 (808)
T ss_pred ecCC-CceEEeCC-----CcCcchhhh-----hhH-------HHHHHHHHHHHHHHHHhhhhccccc-------------
Confidence 2221 11111121 443321110 000 1112222222222211111100000
Q ss_pred hccccHHHHHHHHhhcHHHHHHh------hcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecC
Q psy893 153 TRRGEMKDVYSLLTCSAFSILND------WFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPE 226 (523)
Q Consensus 153 ~~~~~~~~~~~~~~~s~~~~l~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (523)
..|+.+++++ +..++.-+.++........+..... ...+.+..+.........|.+.++.
T Consensus 368 -------------D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~-ls~LSl~~w~qd~~~e~~G~~~~v~ 433 (808)
T PLN02328 368 -------------DVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASL-MSNLSMAYWDQDDPYEMGGDHCFIP 433 (808)
T ss_pred -------------CcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhh-HHHHHhhhhhccccccCCCeEEEEC
Confidence 0122222221 1122322233221110000011100 0111111110000011223344788
Q ss_pred CCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHH-hhCCCCCCCHHHHHH
Q psy893 227 GGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLL-DLIPKGNLDERTTQA 305 (523)
Q Consensus 227 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~-~ll~~~~~~~~~~~~ 305 (523)
||++.|+++|++.+ .|++|++|++|...+ +.+ .|..+|+++.||+||+|+|+..+.. .+...+.+|+...+.
T Consensus 434 GG~~~Li~aLa~~L-----~I~ln~~V~~I~~~~-dgV-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~A 506 (808)
T PLN02328 434 GGNDTFVRELAKDL-----PIFYERTVESIRYGV-DGV-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDA 506 (808)
T ss_pred CcHHHHHHHHHhhC-----CcccCCeeEEEEEcC-CeE-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHH
Confidence 99999999999865 399999999999987 444 2346788999999999999998532 222234588888999
Q ss_pred HhcCCCCCCeEEEEEecCCC
Q psy893 306 VQSIDYASPVTKINVALKSI 325 (523)
Q Consensus 306 ~~~~~~~~~~~~v~~~~~~~ 325 (523)
++++.|. ++.+|++.++++
T Consensus 507 I~~l~yG-~~~KV~L~F~~~ 525 (808)
T PLN02328 507 IQRLGYG-LLNKVALLFPYN 525 (808)
T ss_pred HHcCCCc-ceEEEEEEeCCc
Confidence 9999886 789999999864
No 22
>PLN03000 amine oxidase
Probab=99.90 E-value=1.6e-21 Score=205.99 Aligned_cols=242 Identities=15% Similarity=0.166 Sum_probs=143.5
Q ss_pred CceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHH-hhCCCCCC
Q psy893 220 GAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLL-DLIPKGNL 298 (523)
Q Consensus 220 g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~-~ll~~~~~ 298 (523)
|.+..++||++.|+++|++.+ .|+++++|++|...+ +.+ .|+.+++++.||+||+|+|+..+-. .+...+.+
T Consensus 371 G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~~-dgV-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpL 443 (881)
T PLN03000 371 GDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYGS-NGV-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPEL 443 (881)
T ss_pred CceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEECC-CeE-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCC
Confidence 334478899999999999866 399999999999987 544 3554445899999999999998521 23334568
Q ss_pred CHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEE
Q psy893 299 DERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMV 378 (523)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~ 378 (523)
|+...+.++++.+. .+.+|++.++++ .|- .+. ...-++ .++. ..+...++
T Consensus 444 P~~K~~AI~rL~~G-~l~KViL~Fd~~-FW~--------~d~---~~FG~l-~~~~---------------~~rg~~~~- 493 (881)
T PLN03000 444 PQRKLDCIKRLGFG-LLNKVAMLFPYV-FWS--------TDL---DTFGHL-TEDP---------------NYRGEFFL- 493 (881)
T ss_pred CHHHHHHHHcCCCc-ceEEEEEEeCCc-ccc--------CCC---CceeEE-ecCC---------------CCCceeEE-
Confidence 99899999999886 789999999975 342 111 111112 1110 00111122
Q ss_pred cCCCCCCCCCC-CCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC--C--CCCeEEeEecChhhHHHh
Q psy893 379 LPSSLDNTLSP-PGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPG--F--TQDIVGYEILTPPDLEKE 453 (523)
Q Consensus 379 ~~s~~d~~~ap-~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~--~--~~~i~~~~~~tP~~~~~~ 453 (523)
+.+ ..| .|..++..++. .+. ...|.....+++.+.+++.|.++++. . .+.+ ...+. .|...
T Consensus 494 f~s-----~sp~~G~pVLvafv~-Gd~----A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv-~~ivt---rW~~D 559 (881)
T PLN03000 494 FYS-----YAPVAGGPLLIALVA-GEA----AHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPL-QTVCT---RWGGD 559 (881)
T ss_pred EeC-----CCCCCCCcEEEEEec-Cch----hHHhhcCCHHHHHHHHHHHHHHHhCccccccCCce-EEEEc---cCCCC
Confidence 222 223 45556655553 111 12344445688899999999999852 2 1222 11111 34332
Q ss_pred cCCCCCccccCcccccccccCCCCCCCCCCCCCCCC--CCeEecCCCCCC-C-CCCCCc--cHHHHHHHHHHHhc
Q psy893 454 FGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLI--PHLLLCGSGAHP-G-GGVCGA--PGYIAAQMVNRLMR 522 (523)
Q Consensus 454 ~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i--~~LylaG~~~~p-g-~g~~~a--sG~~aA~~i~~~~~ 522 (523)
....|+.... .+.+...... ....|+ .+|||||+.|.. . +.+.|| ||.+||++|++.++
T Consensus 560 -PysrGSYS~~--~pG~~~~~~d-------~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~ 624 (881)
T PLN03000 560 -PFSLGSYSNV--AVGASGDDYD-------ILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAK 624 (881)
T ss_pred -CCCCccccCC--CCCCchHHHH-------HHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhh
Confidence 1224442111 1111110000 123344 479999998853 2 244577 99999999998764
No 23
>PLN02676 polyamine oxidase
Probab=99.90 E-value=1.5e-21 Score=200.81 Aligned_cols=241 Identities=16% Similarity=0.195 Sum_probs=142.5
Q ss_pred CCCHHHHHHHHHHHHHHC------CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHh--hCCCC
Q psy893 226 EGGMGAVSQALARSAQAS------GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLD--LIPKG 296 (523)
Q Consensus 226 ~gG~~~l~~~l~~~~~~~------G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~--ll~~~ 296 (523)
+||+++|++.|++.+.++ +.+|++|++|++|..++ +.| .|+ .+|++++||+||+|+|+..+ .. +...+
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~-~gV-~V~~~~G~~~~a~~VIvtvPl~vL-k~~~I~F~P 296 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK-NGV-TVKTEDGSVYRAKYVIVSVSLGVL-QSDLIKFKP 296 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC-CcE-EEEECCCCEEEeCEEEEccChHHh-ccCceEEeC
Confidence 689999999999977543 36799999999999987 555 466 78889999999999999985 43 44455
Q ss_pred CCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEE
Q psy893 297 NLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIE 376 (523)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 376 (523)
.+|....+.++++.+. ...+|++.++++ .|.. . ... ..+...+. . .+. .+ ++
T Consensus 297 ~LP~~k~~ai~~l~~g-~~~Kv~l~f~~~-FW~~-------~--~~~--~~~~~~~~-~----------~~~---~~-~~ 348 (487)
T PLN02676 297 PLPDWKIEAIYQFDMA-VYTKIFLKFPYK-FWPS-------G--PGT--EFFLYAHE-R----------RGY---YP-FW 348 (487)
T ss_pred CCCHHHHHHHHhCCce-eeEEEEEEeCCC-CCCC-------C--CCc--eeeeeecc-c----------ccc---ch-hh
Confidence 6888888888888765 789999999865 4521 0 001 11110110 0 000 01 11
Q ss_pred EEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC-CCCCeEEeEecChhhHHHhcC
Q psy893 377 MVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPG-FTQDIVGYEILTPPDLEKEFG 455 (523)
Q Consensus 377 v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~-~~~~i~~~~~~tP~~~~~~~~ 455 (523)
.. .+. .+++..++.+++. .+. ...|.....++..+.+++.|.++++. ..+ ++.... .+|... .
T Consensus 349 ~~----~~~--~~~~~~~l~~~~~-g~~----a~~~~~~s~e~~~~~vl~~L~~~~g~~~~~-p~~~~~---~~W~~d-p 412 (487)
T PLN02676 349 QH----LEN--EYPGSNVLFVTVT-DEE----SRRIEQQPDSETKAEIMEVLRKMFGPNIPE-ATDILV---PRWWSN-R 412 (487)
T ss_pred hh----ccc--CCCCCCEEEEEec-hHH----HHHHHhCCHHHHHHHHHHHHHHHhCCCCCC-cceEEe---cccCCC-C
Confidence 11 111 1234444444432 111 01233334577888999999999852 222 121111 134332 2
Q ss_pred CCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC-C-CCCCc--cHHHHHHHHHHHhc
Q psy893 456 LTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG-G-GVCGA--PGYIAAQMVNRLMR 522 (523)
Q Consensus 456 ~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg-~-g~~~a--sG~~aA~~i~~~~~ 522 (523)
...|+.... .+.+.....+ ..+.|+.+|||||+.+... . -+.|| ||.+||++|++.+.
T Consensus 413 ~s~Gsys~~--~pG~~~~~~~-------~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~ 474 (487)
T PLN02676 413 FFKGSYSNW--PIGVSRYEFD-------QIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIK 474 (487)
T ss_pred CCCcccCCC--CCCCChhHHH-------HHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 224442111 1111111111 3356788999999998642 3 34577 99999999998763
No 24
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.90 E-value=1e-21 Score=189.58 Aligned_cols=239 Identities=21% Similarity=0.153 Sum_probs=152.6
Q ss_pred ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHH
Q psy893 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERT 302 (523)
Q Consensus 224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~ 302 (523)
.+.|||+.|++++++.+ |-.|+++.+|.+|..++ .+| .|+ .+..++.+|.||||+|+..+ .++--.+.+++.+
T Consensus 203 ~~~GGmd~la~Afa~ql---~~~I~~~~~V~rI~q~~-~gV-~Vt~~~~~~~~ad~~i~tiPl~~l-~qI~f~P~l~~~~ 276 (450)
T COG1231 203 QRLGGMDQLAEAFAKQL---GTRILLNEPVRRIDQDG-DGV-TVTADDVGQYVADYVLVTIPLAIL-GQIDFAPLLPAEY 276 (450)
T ss_pred ccCccHHHHHHHHHHHh---hceEEecCceeeEEEcC-CeE-EEEeCCcceEEecEEEEecCHHHH-hhcccCCCCCHHH
Confidence 44599999999999955 56899999999999987 544 366 45468999999999999985 6665555688889
Q ss_pred HHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCC
Q psy893 303 TQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSS 382 (523)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~ 382 (523)
.+++...+|. +.+++.+.++++ .|.. .. .+.|..+. + .+..++|.+|+
T Consensus 277 ~~a~~~~~y~-~~~K~~v~f~rp-FWee-------~~--~l~G~~~t--D-------------------~~~~~i~~~s~ 324 (450)
T COG1231 277 KQAAKGVPYG-SATKIGVAFSRP-FWEE-------AG--ILGGESLT--D-------------------LGLGFISYPSA 324 (450)
T ss_pred HHHhcCcCcc-hheeeeeecCch-hhhh-------cc--cCCceEee--c-------------------CCcceEecCcc
Confidence 9999888776 789999998864 4521 11 13344432 2 24456777664
Q ss_pred CCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-CCCeEEeEecChhhHHHhcCCCCCcc
Q psy893 383 LDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGF-TQDIVGYEILTPPDLEKEFGLTGGNI 461 (523)
Q Consensus 383 ~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~-~~~i~~~~~~tP~~~~~~~~~~~G~~ 461 (523)
+. -+|..++.-+..... +...|.....++..+.++..+.+++|+- .+....... .+|.++-...+|+.
T Consensus 325 -~~---~~G~gVl~g~~~~g~----~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~---~~W~~dpwt~G~~a 393 (450)
T COG1231 325 -PF---ADGPGVLLGSYAFGD----DALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGAS---VDWSKDPWTLGGTA 393 (450)
T ss_pred -cc---CCCceEEEeeeeccc----cceeEecCCHHHHHHHHHHhHhhhCChhhcccccccee---eecccCCcCCcccc
Confidence 21 256665533111111 1124555556788899999999999944 333333121 13544322222221
Q ss_pred ccCcccccccccCCCCCCCCCCCCCCCCCCeEecC-CCC-CCCCCCCCc--cHHHHHHHHHHHh
Q psy893 462 FHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCG-SGA-HPGGGVCGA--PGYIAAQMVNRLM 521 (523)
Q Consensus 462 ~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG-~~~-~pg~g~~~a--sG~~aA~~i~~~~ 521 (523)
.....|..-.-| ....|...+++|| .++ .-++.+.|| ||..||.+|.+.+
T Consensus 394 ---a~~~g~~~~~~~-------~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l 447 (450)
T COG1231 394 ---AYPPGQRTKLYP-------TLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALL 447 (450)
T ss_pred ---ccCCcccccccc-------cccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhh
Confidence 122222211111 2344778899999 444 234566788 9999999998754
No 25
>PLN02568 polyamine oxidase
Probab=99.89 E-value=4.1e-21 Score=198.79 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=80.7
Q ss_pred eeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHh-----hCCC
Q psy893 222 WAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLD-----LIPK 295 (523)
Q Consensus 222 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~-----ll~~ 295 (523)
...++||++.|+++|++.+. +.+|++|++|++|..++ +.+ .|+ .+|+++.||+||+|+|+..+... +.-.
T Consensus 234 ~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~-~~v-~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~ 309 (539)
T PLN02568 234 EITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQD-EPV-KLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFS 309 (539)
T ss_pred eEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeC-CeE-EEEEcCCCEEEcCEEEEcCCHHHHhhccccccceec
Confidence 34789999999999999874 35799999999999886 544 466 78888999999999999986422 2334
Q ss_pred CCCCHHHHHHHhcCCCCCCeEEEEEecCCC
Q psy893 296 GNLDERTTQAVQSIDYASPVTKINVALKSI 325 (523)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 325 (523)
+.+|+...+.++++.+. .+.+|++.++++
T Consensus 310 P~LP~~k~~Ai~~l~~g-~~~Ki~l~f~~~ 338 (539)
T PLN02568 310 PPLPDFKTDAISRLGFG-VVNKLFVELSPR 338 (539)
T ss_pred CCCCHHHHHHHHhcCCc-eeeEEEEEecCC
Confidence 56888888999999875 789999999976
No 26
>PLN02976 amine oxidase
Probab=99.86 E-value=1.9e-19 Score=195.10 Aligned_cols=242 Identities=15% Similarity=0.165 Sum_probs=141.1
Q ss_pred eecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECC---------CCCeEEEE-eCCeEEEcCEEEEcCChHHHHH-h
Q psy893 223 AYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDS---------DKRASGVV-TNGLEIKAKYVLSNTTAKCTLL-D 291 (523)
Q Consensus 223 ~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~---------~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~-~ 291 (523)
..++||++.|+++|++.+ .|++|++|++|...+ ++. +.|. .+|+++.||+||+|+|+..+-. .
T Consensus 929 ~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dG-VtVtTsDGetftADaVIVTVPLGVLKag~ 1002 (1713)
T PLN02976 929 CMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKK-VKVSTSNGSEFLGDAVLITVPLGCLKAET 1002 (1713)
T ss_pred EEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCc-EEEEECCCCEEEeceEEEeCCHHHhhhcc
Confidence 368999999999999855 499999999999842 133 3466 7888999999999999998532 2
Q ss_pred hCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCC
Q psy893 292 LIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPST 371 (523)
Q Consensus 292 ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~ 371 (523)
+...+.||....+.++++.+. .+.+|++.++++ .|-. . .. .+....++ . ..
T Consensus 1003 I~FsPPLPe~KqaAIqrLgfG-~lnKV~LeFdrp-FW~~----------d-~d-~FG~s~ed--------------t-dl 1053 (1713)
T PLN02976 1003 IKFSPPLPDWKYSSIQRLGFG-VLNKVVLEFPEV-FWDD----------S-VD-YFGATAEE--------------T-DL 1053 (1713)
T ss_pred cccCCcccHHHHHHHHhhccc-cceEEEEEeCCc-cccC----------C-CC-cccccccc--------------C-CC
Confidence 444567998888889998875 789999999873 4420 0 00 00000000 0 01
Q ss_pred CCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-CCeEEeEecChhhH
Q psy893 372 RPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDL 450 (523)
Q Consensus 372 ~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tP~~~ 450 (523)
...+++.++ ...|.|..++..++. .+. ...+.....+++.+.+++.|.++|++-. ..++...+. .|
T Consensus 1054 rG~~~~~wn-----lr~psG~pVLVafv~-G~a----AreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvT---rW 1120 (1713)
T PLN02976 1054 RGQCFMFWN-----VKKTVGAPVLIALVV-GKA----AIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVT---DW 1120 (1713)
T ss_pred CceEEEecc-----CCCCCCCCEEEEEec-cHh----HHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEe---cC
Confidence 122233221 123445555555542 111 1123333457788999999999987421 122211111 23
Q ss_pred HHhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCC-eEecCCCCCCC-C-CCCCc--cHHHHHHHHHHHhc
Q psy893 451 EKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPH-LLLCGSGAHPG-G-GVCGA--PGYIAAQMVNRLMR 522 (523)
Q Consensus 451 ~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~-LylaG~~~~pg-~-g~~~a--sG~~aA~~i~~~~~ 522 (523)
... +...|+. ... .+.+....+. ....|+.| |||||..+... . -+.|| ||.+||++|+..+.
T Consensus 1121 ssD-PySrGSY-Sy~-~PGs~~~d~d-------~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1121 GRD-PFSYGAY-SYV-AIGASGEDYD-------ILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred CCC-CCcCccc-cCC-CCCCCchHHH-------HHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 322 1223432 111 1111100000 12346666 99999987542 2 34577 99999999998763
No 27
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1e-19 Score=179.30 Aligned_cols=433 Identities=18% Similarity=0.176 Sum_probs=229.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhhhhh---ccccccccCceEeecCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIY---KDLELKKHGLKLLTRDPR 77 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~~~~---~~lgl~~~g~~~~~~~~~ 77 (523)
|||++||+||+.|+++|++|+|+|+++++||.+.++...+|-..|.|-|+|..+.+.++ ++++.+.. +.+.....
T Consensus 7 GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~-~~~~~~~~- 84 (485)
T COG3349 7 GAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDR-LQLREHTK- 84 (485)
T ss_pred cccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchhe-eehHhhhh-
Confidence 89999999999999999999999999999999999987789999999998877766544 44443322 21111100
Q ss_pred CcccCCCCcccCCCCc--eeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcc
Q psy893 78 SYTPLSPDKWTNKAKS--LTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR 155 (523)
Q Consensus 78 ~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (523)
.+.. ..+ ..|.. +..+.-+..+. . ...++..+-.+..+..+..+.-..
T Consensus 85 ~~~~-~~~---~~g~~~~~~~~~~p~p~~------------~--------------~~~~l~~~~~~~~~~~~~~~~l~~ 134 (485)
T COG3349 85 TFVG-SGT---RPGAIGRFARPDAPQPTN------------G--------------LKAFLRLPQLPRREKIRFVLRLGD 134 (485)
T ss_pred hhcc-cCC---CCCcccccccCCCCCcch------------h--------------hhhhhhccccCHHHHhHHhhcccc
Confidence 0000 000 00000 00000000000 0 001111111111111111000001
Q ss_pred c---cHHHHHHHHhhcHHHHHHhhcCCh-HHHHHHhhhhhccCCCCCCCcchHHHH--HHHHhhcccCCCCceeecCCCH
Q psy893 156 G---EMKDVYSLLTCSAFSILNDWFESE-PLKATLLTDGLIGAMVSPHSPSTSYVL--LHHVMGGAEGVKGAWAYPEGGM 229 (523)
Q Consensus 156 ~---~~~~~~~~~~~s~~~~l~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~gG~ 229 (523)
. ....+.++...|.++|+.+.-..+ ..++.+.....-..+..|+..++...+ +...+. ............|+.
T Consensus 135 ~~~g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~-~~~~~~i~~~~~g~~ 213 (485)
T COG3349 135 APIGADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLI-VTLEASILRNLRGSP 213 (485)
T ss_pred ccchhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHH-hccCcchhhhhcCCC
Confidence 1 234555666789999998855443 344555544444444566655543321 111111 110111112345554
Q ss_pred -HHHHHHHHHHHHHCCcEEEeCceeeEEEECC---CCCeEEEEeCCeEE---EcCEEEEcCChHHHHHhhCCCCCCCHHH
Q psy893 230 -GAVSQALARSAQASGAQLFTSQTVTEITLDS---DKRASGVVTNGLEI---KAKYVLSNTTAKCTLLDLIPKGNLDERT 302 (523)
Q Consensus 230 -~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~---~~~~~~v~~~g~~~---~ad~vI~a~~~~~~~~~ll~~~~~~~~~ 302 (523)
..+...+.+++++.|.++++..+|.+|..+. +.+++++...+... .++.++.+.+... +...++.+-...+.
T Consensus 214 ~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~-~~~~~ps~W~~~~~ 292 (485)
T COG3349 214 DEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQR-FKRDLPSEWPKWSN 292 (485)
T ss_pred cceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccch-HhhcCccccccccc
Confidence 4678899999999999999999999999864 24466666225433 4455666655555 34455543221333
Q ss_pred HHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCC
Q psy893 303 TQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSS 382 (523)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~ 382 (523)
...+..+. ..++.++++.++....++.. ..+.+++.. .. +.. .+.+..+.-.+..
T Consensus 293 f~~ly~l~-~~p~~~~~l~~~~~~~~~~~---------~~~~~~~dn--~~-------~s~------~~l~~~~ad~~~~ 347 (485)
T COG3349 293 FDGLYGLR-LVPVITLHLRFDGWVTELTD---------RNQQFGIDN--LL-------WSD------DTLGGVVADLALT 347 (485)
T ss_pred cccccccc-ccceeEEEEeecCccccccc---------cchhhhhhc--cc-------ccc------ccCCceeeecccc
Confidence 33443332 34788889998865433211 112111110 00 000 0112112111111
Q ss_pred CCCCCCCCCce-EEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-CCeEEeEecChhhHHHhcCCCCCc
Q psy893 383 LDNTLSPPGHH-VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDLEKEFGLTGGN 460 (523)
Q Consensus 383 ~d~~~ap~G~~-~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tP~~~~~~~~~~~G~ 460 (523)
. +....+|.. .+.... .| +.+|....++++.....+.+...+|... ..+..+.+.++....
T Consensus 348 ~-~~y~e~g~~~~le~~~--~~-----~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~~q~~~--------- 410 (485)
T COG3349 348 S-PDYVEPGAGCYLEKVL--AP-----GWPFLFESDEAIVATFEKELYELVPSLAEAKLKSSVLVNQQSLY--------- 410 (485)
T ss_pred c-hhhccccchhhhhhhh--cc-----cccccccchhhHHHHHHHHhhhcCCchhcccccccceecccccc---------
Confidence 1 133334432 111111 12 2245556778888899999998888764 344445555544332
Q ss_pred cccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCC-CCCCCC-CCc--cHHHHHHHHHHHh
Q psy893 461 IFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGA-HPGGGV-CGA--PGYIAAQMVNRLM 521 (523)
Q Consensus 461 ~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~-~pg~g~-~~a--sG~~aA~~i~~~~ 521 (523)
+...... ..|| ..+||++|++++||++ .+..+. +++ ||+.||+.|+..+
T Consensus 411 --~~~pgs~---~~rP-------~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~ 463 (485)
T COG3349 411 --GLAPGSY---HYRP-------EQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNL 463 (485)
T ss_pred --ccCCCcc---ccCC-------CCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhh
Confidence 2222222 3577 7899999999999999 343333 355 9999999999765
No 28
>KOG0029|consensus
Probab=99.83 E-value=2.3e-19 Score=182.34 Aligned_cols=240 Identities=14% Similarity=0.111 Sum_probs=140.4
Q ss_pred eecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHh-hCCCCCCCH
Q psy893 223 AYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLD-LIPKGNLDE 300 (523)
Q Consensus 223 ~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~-ll~~~~~~~ 300 (523)
....+|+..++.++++ |.+|+++..|.+|...+++. +.++ .++..+.+|.||+++|...+-.. +...+.+|.
T Consensus 212 ~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~ 285 (501)
T KOG0029|consen 212 LLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGDDGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPR 285 (501)
T ss_pred hHhhCCccHHHhhcCC-----CcceeeceeeEEEEEecCCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcH
Confidence 3668888888888887 88999999999999987443 3455 56666999999999999986332 334567899
Q ss_pred HHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcC
Q psy893 301 RTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLP 380 (523)
Q Consensus 301 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~ 380 (523)
...+.++++... .+.+|.+.++.. .|- ......... .++.. ..+. + .+.
T Consensus 286 ~k~~aI~~lg~g-~~~Kv~l~F~~~-fW~-----------~~~d~fg~~-~~~~~---------------~~~~-~-~f~ 334 (501)
T KOG0029|consen 286 WKQEAIDRLGFG-LVNKVILEFPRV-FWD-----------QDIDFFGIV-PETSV---------------LRGL-F-TFY 334 (501)
T ss_pred HHHHHHHhcCCC-ceeEEEEEeccc-cCC-----------CCcCeEEEc-ccccc---------------ccch-h-hhh
Confidence 999999999864 788999888854 341 111112222 22110 0010 0 111
Q ss_pred CCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCC--CCCeEEeEecChhhHHHhcCCCC
Q psy893 381 SSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGF--TQDIVGYEILTPPDLEKEFGLTG 458 (523)
Q Consensus 381 s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~--~~~i~~~~~~tP~~~~~~~~~~~ 458 (523)
+..+-. ++.++...+.... ...++...++++.+.++..|+++|+.. .+.+.+. +. .|... ....
T Consensus 335 ~~~~~~----~~~~l~~~~~~~~-----a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~-vt---~w~~d-~~~~ 400 (501)
T KOG0029|consen 335 DCKPVA----GHPVLMSVVVGEA-----AERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDAL-VT---RWGTD-PLSG 400 (501)
T ss_pred hcCccC----CCCeEEEEehhhh-----hHHHhcCCHHHHHHHHHHHHHHHhccCcCCCcccee-ee---eeccc-ccCC
Confidence 111111 1222332321111 124556678999999999999999821 2211111 11 12111 1223
Q ss_pred CccccCcccccccccCCCCCCCCCCCCCCCCCC-eEecCCCCCC-C-CCCCCc--cHHHHHHHHHHHhc
Q psy893 459 GNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPH-LLLCGSGAHP-G-GGVCGA--PGYIAAQMVNRLMR 522 (523)
Q Consensus 459 G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~-LylaG~~~~p-g-~g~~~a--sG~~aA~~i~~~~~ 522 (523)
|+.+-... ..|...+. ..+.|+.| +||+|..|.- . +.+.|| ||.+||..|+..+.
T Consensus 401 gsys~~~~-------~~~~~~y~--~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 401 GSYSYVAV-------GSDGDDYD--RLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred ccccccCC-------CCChhHHH--HHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence 33321111 11111111 34668899 9999988731 1 245577 99999999998764
No 29
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.79 E-value=3.8e-17 Score=164.63 Aligned_cols=320 Identities=14% Similarity=0.171 Sum_probs=181.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeeccc-------------------CCceeccchhhhhhhh--hhhh
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEII-------------------PGFQFSRASYLLSLLR--PHIY 59 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~-------------------~G~~~d~g~~~~~~~~--~~~~ 59 (523)
|+|++|+.+|+.|+++|++|+++|+|++.||+.+|+... ..|..|..+.++.... -.++
T Consensus 11 GtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~~G~lv~lL 90 (443)
T PTZ00363 11 GTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMASGELVKIL 90 (443)
T ss_pred CCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeecCChHHHHH
Confidence 899999999999999999999999999999999987411 1112222232211111 1345
Q ss_pred ccccccccCceEeecCCCCcccC-CCCcccCCCCceeecCC-HHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhh
Q psy893 60 KDLELKKHGLKLLTRDPRSYTPL-SPDKWTNKAKSLTLGLD-PQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFD 137 (523)
Q Consensus 60 ~~lgl~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (523)
...++.++ +++...+. ..++ .+ |+...+|.+ .+.+...+..++ +...+.+|+..+..+..
T Consensus 91 ~~s~v~ry-leF~~l~g--~~v~~~~------g~~~~vP~s~~~~~~s~ll~l~--eKr~l~kfl~~v~~~~~------- 152 (443)
T PTZ00363 91 LHTDVTRY-LEFKVIDG--SYVYQKE------GKIHKVPATDMEALSSPLMGFF--EKNRCKNFLQYVSNYDE------- 152 (443)
T ss_pred hhcCccce-eeeEEece--EEEEecC------CeEEECCCCHHHHhhCCCcchh--hHHHHHHHHHHHHhhcc-------
Confidence 55566666 67765542 2222 22 565666653 333333232222 44445555554433221
Q ss_pred cCCCChhhHHHHHHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhcc---CCC-CCCCcchHHHHHHHHhh
Q psy893 138 IAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIG---AMV-SPHSPSTSYVLLHHVMG 213 (523)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~ 213 (523)
.++.. ... ..+...|+.++++++..++..+.++....... .+. .|... +...+..+...
T Consensus 153 ~~~~~---------~~~-------~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~-tl~ri~~y~~S 215 (443)
T PTZ00363 153 NDPET---------HKG-------LNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIE-TVMRIKLYMDS 215 (443)
T ss_pred CChhh---------hcc-------cCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHH-HHHHHHHHHHH
Confidence 00000 000 00123588899999988888887665332211 111 11111 11111122211
Q ss_pred cccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhh
Q psy893 214 GAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDL 292 (523)
Q Consensus 214 ~~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~l 292 (523)
...+..+.+.+|.||++.|+++|++.++..|++++++++|++|..++++++++|+ .+|+++.|+.||++.+..
T Consensus 216 ~~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~------ 289 (443)
T PTZ00363 216 LSRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF------ 289 (443)
T ss_pred HhhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc------
Confidence 1111122334899999999999999999999999999999999987646778888 799999999999965432
Q ss_pred CCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCC
Q psy893 293 IPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTR 372 (523)
Q Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~ 372 (523)
|.. . . ....+....+.++.+...+ . ..+...|.+ +.. .....
T Consensus 290 -p~~-~--------~---~~~~v~R~i~i~~~pi~~~--------~--~~~~~~i~~-P~~--------------~~~~~ 331 (443)
T PTZ00363 290 -PDK-V--------K---KVGKVIRCICILNHPIPNT--------N--NANSCQIII-PQK--------------QLGRK 331 (443)
T ss_pred -ccc-c--------c---cccEEEEEEEEEccccccc--------C--cCccEEEEE-CCc--------------ccCCC
Confidence 110 0 0 1123444455556553211 0 112335666 221 12223
Q ss_pred CeEEEEcCCCCCCCCCCCCceEEEEEec
Q psy893 373 PMIEMVLPSSLDNTLSPPGHHVCLLFTQ 400 (523)
Q Consensus 373 ~~~~v~~~s~~d~~~ap~G~~~i~~~~~ 400 (523)
+.+++..-+. +...+|+|+.++.+.+.
T Consensus 332 ~~i~v~~~s~-~~~~cp~g~~i~~~st~ 358 (443)
T PTZ00363 332 NDIYIMLVSS-NHGVCPKGKYIAIISTT 358 (443)
T ss_pred CCEEEEEecC-CCCcCCCCcEEEEEEEe
Confidence 5567665442 34668999998877653
No 30
>KOG1276|consensus
Probab=99.79 E-value=2.1e-17 Score=156.87 Aligned_cols=421 Identities=19% Similarity=0.157 Sum_probs=235.7
Q ss_pred CCChhHHHHHHHHHHcCCcE--EEEccCCCCCcceeeecccCCceeccchhhhhhhhh------hhhccccccccCceEe
Q psy893 1 EAGHNGLVSAAYLARAGLSV--AVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP------HIYKDLELKKHGLKLL 72 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V--~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~------~~~~~lgl~~~g~~~~ 72 (523)
|||++||+||++|++++.+| +|+|+.+++||.++|....+|+.||.|+..+....+ .++.+||+++. +..+
T Consensus 18 GGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~e-~~~i 96 (491)
T KOG1276|consen 18 GGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLEDE-LQPI 96 (491)
T ss_pred CCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccce-eeec
Confidence 89999999999999998775 559999999999999444689999999877654444 57888888754 3222
Q ss_pred ec-CCCCcccCCCCcccCCCCceeecCCHHH-HHHHHHccChhhHHHHHHHHHHHHHHHhH-HHhhhhcC-CCChhhHHH
Q psy893 73 TR-DPRSYTPLSPDKWTNKAKSLTLGLDPQK-NYEQIARFSVKDAQNFEKYDHHIEEITNL-LDPLFDIA-PHDFGNLLM 148 (523)
Q Consensus 73 ~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 148 (523)
.. .+.....+... .++-..++..+.. ....+..+ .+.+... +...++.+ ..+
T Consensus 97 ~~~~paaknr~l~~----~~~L~~vP~sl~~s~~~~l~p~--------------~k~L~~a~l~e~fr~~~~~~------ 152 (491)
T KOG1276|consen 97 DISHPAAKNRFLYV----PGKLPTVPSSLVGSLKFSLQPF--------------GKPLLEAFLRELFRKKVSDP------ 152 (491)
T ss_pred CCCChhhhheeecc----CcccccCCcccccccccccCcc--------------cchhHHHHHhhhccccCCCC------
Confidence 21 22111111100 0222222222211 00000001 0111111 11111110 000
Q ss_pred HHHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCC-CCCCCcchH--HHHHHHHh------------h
Q psy893 149 YNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAM-VSPHSPSTS--YVLLHHVM------------G 213 (523)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~------------~ 213 (523)
...+|+.+|.+++|.++....+++.++. |.+ .++.+.+.- |..++... +
T Consensus 153 ---------------~~dESV~sF~~RrfG~eV~d~~isp~i~-GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~ 216 (491)
T KOG1276|consen 153 ---------------SADESVESFARRRFGKEVADRLISPFIR-GIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRA 216 (491)
T ss_pred ---------------CccccHHHHHHHhhhHHHHHHHHHHHhC-ccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHH
Confidence 0135888888888887766666665442 221 233333322 22222100 0
Q ss_pred ---c--------------ccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCe-EEEE-eCCe-E
Q psy893 214 ---G--------------AEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRA-SGVV-TNGL-E 273 (523)
Q Consensus 214 ---~--------------~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~-~~v~-~~g~-~ 273 (523)
. .......+ -.+||++.++++|.+.+.+..+.|.++-++..+.....+++ ..++ .++. .
T Consensus 217 ~~~~~~~k~~e~~~~~~~~~e~~~~~-sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~ 295 (491)
T KOG1276|consen 217 KFARKRTKKAETALSAQAKKEKWTMF-SLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQR 295 (491)
T ss_pred HHHhhcCCCccchhhhhhcccccchh-hhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCcee
Confidence 0 00112233 45899999999999999999999999999988876553432 2333 4453 3
Q ss_pred EEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCC-C
Q psy893 274 IKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNC-E 352 (523)
Q Consensus 274 ~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~ 352 (523)
+..+++..+.++... .+|++. ..+.....+.++.|. ++.+|++-+.++..- -++ .|.-++-+ +
T Consensus 296 ~~~~~~~~t~~~~k~-a~ll~~--~~~sls~~L~ei~y~-~V~vVn~~yp~~~~~---------~pl---~GFG~LvPs~ 359 (491)
T KOG1276|consen 296 VVVSYDAATLPAVKL-AKLLRG--LQNSLSNALSEIPYV-PVAVVNTYYPKEKID---------LPL---QGFGLLVPSE 359 (491)
T ss_pred eeccccccccchHHh-hhhccc--cchhhhhhhhcCCCC-ceEEEEEeccCcccc---------ccc---ccceeeccCC
Confidence 455666678888884 688876 345567788888765 889999888764210 112 12222211 1
Q ss_pred CHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy893 353 DMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYC 432 (523)
Q Consensus 353 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~ 432 (523)
..+ .-..+.+.+.|...|.++|.++.+++....+.. + ..-.....+++.+.+.+.|.+++
T Consensus 360 ~~~---------------~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~-n----~~~~~~S~ee~~~~v~~alq~~L 419 (491)
T KOG1276|consen 360 PKN---------------GFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGST-N----TSLAVPSPEELVNAVTSALQKML 419 (491)
T ss_pred CCC---------------CCceeEEEeecccCCCCCCCceEEEEecccccc-c----CcCCCCCHHHHHHHHHHHHHHHh
Confidence 100 124566667777788888888766654432110 1 01112345888999999999886
Q ss_pred CCCCCCeEEeEecChhhHHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCC--CCCCeEecCCCCCCCCCCCCc--
Q psy893 433 PGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFT--LIPHLLLCGSGAHPGGGVCGA-- 508 (523)
Q Consensus 433 P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t--~i~~LylaG~~~~pg~g~~~a-- 508 (523)
++++......+. -|.+ -.|+..+.|... +... . ..-+ +-.+|+++|.+. -|.++..|
T Consensus 420 -gi~~~P~~~~v~---l~~~--ciPqy~vGh~~~-le~a--~---------~~l~~~~g~~l~l~G~~y-~Gv~vgdcI~ 480 (491)
T KOG1276|consen 420 -GISNKPVSVNVH---LWKN--CIPQYTVGHDDV-LEAA--K---------SMLTDSPGLGLFLGGNHY-GGVSVGDCIE 480 (491)
T ss_pred -CCCCCcccccce---ehhh--cccceecchHHH-HHHH--H---------HHHHhCCCCceEeecccc-CCCChhHHHH
Confidence 666554433221 1111 123444333221 1110 0 1112 234899999997 55677766
Q ss_pred cHHHHHHHHH
Q psy893 509 PGYIAAQMVN 518 (523)
Q Consensus 509 sG~~aA~~i~ 518 (523)
||+.+|.+++
T Consensus 481 sg~~~A~~v~ 490 (491)
T KOG1276|consen 481 SGRKTAVEVI 490 (491)
T ss_pred hhHHHHHhhc
Confidence 9999998875
No 31
>KOG0685|consensus
Probab=99.77 E-value=2.8e-16 Score=151.94 Aligned_cols=251 Identities=15% Similarity=0.183 Sum_probs=141.8
Q ss_pred ecCCCHHHHHHHHHHHHHHCC------cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHH---hhC
Q psy893 224 YPEGGMGAVSQALARSAQASG------AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLL---DLI 293 (523)
Q Consensus 224 ~~~gG~~~l~~~l~~~~~~~G------~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~---~ll 293 (523)
..+-|...+.+.|+..+.+.. .+++++++|.+|..++.+++ .|+ .||+.+.||+||+|++...+-. +|.
T Consensus 217 ~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF 295 (498)
T KOG0685|consen 217 WNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLF 295 (498)
T ss_pred echhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhc
Confidence 345567888888888665432 35667799999999864554 577 9999999999999999887522 244
Q ss_pred CCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCC
Q psy893 294 PKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRP 373 (523)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 373 (523)
.+.+|....++++++..+ ++.++++.+.+++ | |. +.. . .+++...++.+++...- + .|-+ .
T Consensus 296 -~P~LP~~K~~AIe~lgfG-tv~KiFLE~E~pf-w---p~-----~~~-~-i~~lw~~e~l~e~r~~~-~----~w~~-~ 356 (498)
T KOG0685|consen 296 -VPPLPAEKQRAIERLGFG-TVNKIFLEFEEPF-W---PS-----DWN-G-IQLLWLDEDLEELRSTL-D----AWEE-D 356 (498)
T ss_pred -CCCCCHHHHHHHHhccCC-ccceEEEEccCCC-C---CC-----CCc-e-eEEEEecCcHHHHhhhh-H----HHHh-h
Confidence 446999999999999886 7899999998764 3 11 001 1 12222244433322111 0 0111 1
Q ss_pred eEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-----CCeEEeEecChh
Q psy893 374 MIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-----QDIVGYEILTPP 448 (523)
Q Consensus 374 ~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-----~~i~~~~~~tP~ 448 (523)
++.+. |. +.+| +++...+.. + +...-.....|++.+.+...|.+++.+++ .-+...+...|.
T Consensus 357 ~~~f~-~v----~~~~---~vL~gWiaG-~----~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~ 423 (498)
T KOG0685|consen 357 IMGFQ-PV----SWAP---NVLLGWIAG-R----EARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPF 423 (498)
T ss_pred ceEEE-Ec----Ccch---hhhheeccC-C----cceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCc
Confidence 11221 11 1122 333333221 1 00111223458888888888888775543 112222233332
Q ss_pred hHHHhcCCCCCccc----c-CcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCC--CCCCc--cHHHHHHHHHH
Q psy893 449 DLEKEFGLTGGNIF----H-GALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGG--GVCGA--PGYIAAQMVNR 519 (523)
Q Consensus 449 ~~~~~~~~~~G~~~----g-~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~--g~~~a--sG~~aA~~i~~ 519 (523)
+ .||.- + ....++. ...|.+- ...+.-|.+.|||..||--- -+.|| ||.+.|+++++
T Consensus 424 f--------rGSYSY~svgs~~~d~~~--~a~p~p~----~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~ 489 (498)
T KOG0685|consen 424 F--------RGSYSYRSVGSDGSDTGA--LALPLPL----TLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLE 489 (498)
T ss_pred c--------CceeeEeeccccccccch--hhccCCc----cccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHH
Confidence 2 34320 1 0111221 1223221 33456678999999997431 23477 99999999998
Q ss_pred Hh
Q psy893 520 LM 521 (523)
Q Consensus 520 ~~ 521 (523)
.+
T Consensus 490 ~y 491 (498)
T KOG0685|consen 490 HY 491 (498)
T ss_pred HH
Confidence 54
No 32
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.71 E-value=2e-16 Score=146.10 Aligned_cols=270 Identities=18% Similarity=0.181 Sum_probs=150.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeec---ccCCceeccchhhhhh-hhh---hhhccccccccCceEee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEE---IIPGFQFSRASYLLSL-LRP---HIYKDLELKKHGLKLLT 73 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~---~~~G~~~d~g~~~~~~-~~~---~~~~~lgl~~~g~~~~~ 73 (523)
|+|++||+||+.|++. ++|+++|++.++||.++|.. ..+|+..|+|..+... ..| .+|+++|++.. .
T Consensus 15 GsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~-----a 88 (447)
T COG2907 15 GSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTK-----A 88 (447)
T ss_pred cccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCCc-----c
Confidence 8999999999999987 99999999999999999874 2456678999877543 445 57888886532 1
Q ss_pred cCCCCcccCCCCcccCCCCceeec--CCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHH
Q psy893 74 RDPRSYTPLSPDKWTNKAKSLTLG--LDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNL 151 (523)
Q Consensus 74 ~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (523)
.+.. +.+..+ +..+.+. ..+..+..+- ..-.-++|+.++.++...-.. ...+.+
T Consensus 89 s~Ms-f~v~~d------~gglEy~g~tgl~~L~aqk------~n~l~pRf~~mlaeiLrf~r~--~~~~~d--------- 144 (447)
T COG2907 89 SFMS-FSVSLD------MGGLEYSGLTGLAGLLAQK------RNLLRPRFPCMLAEILRFYRS--DLAPSD--------- 144 (447)
T ss_pred ccee-EEEEec------CCceeeccCCCccchhhcc------ccccchhHHHHHHHHHHHhhh--hccchh---------
Confidence 1111 222222 1111111 1111111100 001113344444433321100 000000
Q ss_pred HhccccHHHHHHHHhhcHHHHHHhhcCChHHHH-HHhhhh-hccCCCCCCCcchHHH---HHHHHhh-c--ccCCCCcee
Q psy893 152 FTRRGEMKDVYSLLTCSAFSILNDWFESEPLKA-TLLTDG-LIGAMVSPHSPSTSYV---LLHHVMG-G--AEGVKGAWA 223 (523)
Q Consensus 152 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~-~--~~~~~g~~~ 223 (523)
....-..++.+||.+.--...+.. .+...+ -+++ +|......|. ++.+... . .......|.
T Consensus 145 ---------~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiws--tp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wr 213 (447)
T COG2907 145 ---------NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWS--TPLADASRYPACNFLVFTDNHGLLYLPKRPTWR 213 (447)
T ss_pred ---------hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhc--CcHhhhhhhhHHHHHHHHhccCceecCCCCcee
Confidence 000012456666654322222221 111111 1121 2211111121 1111111 0 123455677
Q ss_pred ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHH
Q psy893 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERT 302 (523)
Q Consensus 224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~ 302 (523)
.+.||+.+.++.|..-+ +++|+++++|..|.+-. +.+. +. .+|++-++|+||+++.+..++ .||+++ +++.
T Consensus 214 tV~ggS~~yvq~laa~~---~~~i~t~~~V~~l~rlP-dGv~-l~~~~G~s~rFD~vViAth~dqAl-~mL~e~--sp~e 285 (447)
T COG2907 214 TVAGGSRAYVQRLAADI---RGRIETRTPVCRLRRLP-DGVV-LVNADGESRRFDAVVIATHPDQAL-ALLDEP--SPEE 285 (447)
T ss_pred EcccchHHHHHHHhccc---cceeecCCceeeeeeCC-CceE-EecCCCCccccceeeeecChHHHH-HhcCCC--CHHH
Confidence 88999999999988844 57899999999999987 4443 44 789888999999999999975 677653 3455
Q ss_pred HHHHhcCCCCCCeEEEE
Q psy893 303 TQAVQSIDYASPVTKIN 319 (523)
Q Consensus 303 ~~~~~~~~~~~~~~~v~ 319 (523)
.+.++.+.|+..-.+++
T Consensus 286 ~qll~a~~Ys~n~aVlh 302 (447)
T COG2907 286 RQLLGALRYSANTAVLH 302 (447)
T ss_pred HHHHHhhhhhhceeEEe
Confidence 66899998875444444
No 33
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.65 E-value=1.8e-15 Score=135.44 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC-eEEEcCEEEEcCChHHHHHhhCCC--CCCCHH
Q psy893 226 EGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG-LEIKAKYVLSNTTAKCTLLDLIPK--GNLDER 301 (523)
Q Consensus 226 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g-~~~~ad~vI~a~~~~~~~~~ll~~--~~~~~~ 301 (523)
.-||.+|++.|++- -+|+++++|++|...+ +. +.++ .+| +...+|.||++.|++++ ..|+.. ..++..
T Consensus 104 ~pgmsalak~LAtd-----L~V~~~~rVt~v~~~~-~~-W~l~~~~g~~~~~~d~vvla~PAPQ~-~~LLt~~~~~~p~~ 175 (331)
T COG3380 104 EPGMSALAKFLATD-----LTVVLETRVTEVARTD-ND-WTLHTDDGTRHTQFDDVVLAIPAPQT-ATLLTTDADDLPAA 175 (331)
T ss_pred CcchHHHHHHHhcc-----chhhhhhhhhhheecC-Ce-eEEEecCCCcccccceEEEecCCCcc-hhhcCcccccchHH
Confidence 44688888877764 4699999999999885 44 4576 454 46789999999999986 467654 457777
Q ss_pred HHHHHhcCCCCCCeEEEEEecCCC
Q psy893 302 TTQAVQSIDYASPVTKINVALKSI 325 (523)
Q Consensus 302 ~~~~~~~~~~~~~~~~v~~~~~~~ 325 (523)
++..+..+.|. +.+.+.+++..+
T Consensus 176 l~~~~a~V~y~-Pc~s~~lg~~q~ 198 (331)
T COG3380 176 LRAALADVVYA-PCWSAVLGYPQP 198 (331)
T ss_pred HHHhhccceeh-hHHHHHhcCCcc
Confidence 88888888776 455555666643
No 34
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.48 E-value=5.5e-13 Score=135.82 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHHHHc----CCcEEEEccCCCCCcceeeec-ccCCceeccchhh
Q psy893 1 EAGHNGLVSAAYLARA----GLSVAVLERRHVLGGAAVTEE-IIPGFQFSRASYL 50 (523)
Q Consensus 1 GaG~~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~-~~~G~~~d~g~~~ 50 (523)
|||++||+||++|++. |++|+|||+++.+||++.++. ..+||.++.|...
T Consensus 29 GaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~ 83 (576)
T PRK13977 29 GSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM 83 (576)
T ss_pred CCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc
Confidence 8999999999999996 689999999999999998754 3579999888654
No 35
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.37 E-value=4.1e-13 Score=98.19 Aligned_cols=52 Identities=40% Similarity=0.644 Sum_probs=46.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhh
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSL 53 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~ 53 (523)
|||++||+||++|+++|++|+|+|+++++||+++++. .+|+.+|.|++++..
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~d~g~~~~~~ 54 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFR-IPGYRFDLGAHYFFP 54 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEE-ETTEEEETSS-SEEE
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEE-ECCEEEeeccEEEeC
Confidence 8999999999999999999999999999999999987 588999999888644
No 36
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.19 E-value=1.4e-10 Score=116.04 Aligned_cols=62 Identities=39% Similarity=0.537 Sum_probs=53.2
Q ss_pred ecCCC---HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 224 YPEGG---MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 224 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
++.+| ...+++.|.+.+++.|++|+.+++|++|..++ +++++|+ .+|+ +.||+||+|++++.
T Consensus 138 ~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 138 FPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG-GRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp ETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET-TEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred ccccccccccchhhhhHHHHHHhhhhccccccccchhhcc-cccccccccccc-cccceeEecccccc
Confidence 66677 78999999999999999999999999999998 8888888 6775 99999999999986
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.11 E-value=2.5e-09 Score=102.62 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=54.3
Q ss_pred CCceeecC-CCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893 219 KGAWAYPE-GGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA 285 (523)
Q Consensus 219 ~g~~~~~~-gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~ 285 (523)
.|.. ||. ...+.|+++|...+++.||+|+++++|.+|..++ .. ..+. .+|+++.||.+|+|++-
T Consensus 100 ~Gr~-Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~-~~-f~l~t~~g~~i~~d~lilAtGG 165 (408)
T COG2081 100 LGRM-FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD-SG-FRLDTSSGETVKCDSLILATGG 165 (408)
T ss_pred Ccee-cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC-ce-EEEEcCCCCEEEccEEEEecCC
Confidence 4554 677 7788999999999999999999999999999986 33 3566 77878999999999883
No 38
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.11 E-value=6.7e-10 Score=109.68 Aligned_cols=59 Identities=24% Similarity=0.314 Sum_probs=48.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCce-eccchhhhhhhhhhhhc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQ-FSRASYLLSLLRPHIYK 60 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~-~d~g~~~~~~~~~~~~~ 60 (523)
|||++||++|++|++.|.+|+|+|+++.+||.|.+.. .+|.. .+.|+|++....+.+++
T Consensus 8 GaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~~ 67 (377)
T TIGR00031 8 GAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVWD 67 (377)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHHH
Confidence 8999999999999999999999999999999998765 45654 47888876554554444
No 39
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.06 E-value=1.1e-07 Score=96.11 Aligned_cols=56 Identities=25% Similarity=0.208 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
...+.+.|.+.+++.|++++.+++|.+|..++ +++ .|+ .++ ++.+|+||+|++.+.
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~-~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTE-LLV-TVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeE-EEEeCCC-EEEeCEEEEecCcch
Confidence 35788899999999999999999999999876 554 466 445 799999999999875
No 40
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.06 E-value=9.7e-09 Score=102.63 Aligned_cols=248 Identities=19% Similarity=0.224 Sum_probs=131.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeeccc--------------------CCceeccchhhhhhhhhhhhc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEII--------------------PGFQFSRASYLLSLLRPHIYK 60 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~--------------------~G~~~d~g~~~~~~~~~~~~~ 60 (523)
|.|+.-...|..|+++|++|+.+|+|+.-||...++... ..|..|.-+.++. ....+++
T Consensus 11 GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~-a~g~LV~ 89 (438)
T PF00996_consen 11 GTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY-ARGPLVK 89 (438)
T ss_dssp --SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE-TTSHHHH
T ss_pred CCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh-ccCHHHH
Confidence 788888899999999999999999999999999887621 0122222222211 1112222
Q ss_pred ---cccccccCceEeecCCCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhh
Q psy893 61 ---DLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFD 137 (523)
Q Consensus 61 ---~lgl~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (523)
.-++.++ +++...+.. | ++.. ++...+|......... ..+...+...+.+|+..+..+.+.
T Consensus 90 lLi~S~V~rY-LEFk~V~~~-~-v~~~------~~l~kVP~sr~dvf~s-~~lsl~eKR~lmkFl~~v~~~~~~------ 153 (438)
T PF00996_consen 90 LLISSGVTRY-LEFKAVDGS-Y-VYKN------GKLHKVPCSREDVFKS-KLLSLFEKRRLMKFLKFVANYEED------ 153 (438)
T ss_dssp HHHHCTGGGG-SEEEEESEE-E-EEET------TEEEE--SSHHHHHC--TTS-HHHHHHHHHHHHHHHHGCTT------
T ss_pred HHHhCCcccc-eEEEEccee-E-EEeC------CEEeeCCCCHHHhhcC-CCccHHHHHHHHHHHHHHhhcccC------
Confidence 2255565 677665532 1 1111 5666666654321111 112223454555555554333211
Q ss_pred cCCCChhhHHHHHHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhh-hhhccCCCCCCCcc-hHH-HHHHHHhhc
Q psy893 138 IAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLT-DGLIGAMVSPHSPS-TSY-VLLHHVMGG 214 (523)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~-~~~~~~~~~ 214 (523)
.+..... .+....++.+++.++-.++.++.++.. .++...-....++. ... .+..|+-+.
T Consensus 154 -~~~~~~~----------------~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Sl 216 (438)
T PF00996_consen 154 -DPSTHKG----------------LDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSL 216 (438)
T ss_dssp -BGGGSTT----------------G-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHH
T ss_pred -Ccchhhc----------------cccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHH
Confidence 0000000 001135777888887778888777753 22221100001111 111 122222222
Q ss_pred ccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEc
Q psy893 215 AEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSN 282 (523)
Q Consensus 215 ~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a 282 (523)
..+..+.+-||.-|.+.|++++.+.+.-.|+...+|++|.+|..++++++.+|..+|++++|++||..
T Consensus 217 gryG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 217 GRYGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp CCCSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEE
T ss_pred hccCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEEC
Confidence 22233455689999999999999999999999999999999999654888888888999999999964
No 41
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.06 E-value=3.5e-07 Score=93.21 Aligned_cols=57 Identities=30% Similarity=0.292 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..++..|++.+.++|++++.+++|++|...+++++++|+ .+| ++.+++||++++.+.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 467788999999999999999999999865326666777 556 799999999888875
No 42
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.01 E-value=2.6e-07 Score=93.22 Aligned_cols=60 Identities=30% Similarity=0.389 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
..++..+.+.+.+.|++++.+++|++|..++ +.+ .|+ .+| ++.||+||+|++++. ..|++
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~~--~~l~~ 209 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADG-DGV-TVTTADG-TYEAKKLVVSAGAWV--KDLLP 209 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeC-CeE-EEEeCCC-EEEeeEEEEecCcch--hhhcc
Confidence 5778888888888999999999999999876 543 466 555 789999999999986 35554
No 43
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.95 E-value=1.8e-08 Score=100.01 Aligned_cols=58 Identities=33% Similarity=0.401 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeE-EEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLE-IKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~-~~ad~vI~a~~~~~ 287 (523)
...++.+|++.+.++|++|++|++|+.|+..+ ++++.+. .+|++ ++|+.||.+++...
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQS-DGVFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-CceEEEEecCCcEEEEeeEEEECCchhH
Confidence 56899999999999999999999999999987 4355455 67765 99999999998775
No 44
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.94 E-value=5.7e-09 Score=104.57 Aligned_cols=62 Identities=27% Similarity=0.344 Sum_probs=46.1
Q ss_pred ecCC-CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEe-CCeEEEcCEEEEcCChH
Q psy893 224 YPEG-GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVT-NGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 224 ~~~g-G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~-~g~~~~ad~vI~a~~~~ 286 (523)
||.- -...+.+.|.+.+++.|++|+++++|.+|..++ +++..|+. +++++.||.||+|++-.
T Consensus 102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TEEEEEEETTTEEEEESEEEE----S
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-CceeEeeccCcccccCCEEEEecCCC
Confidence 6654 467899999999999999999999999999987 77677884 88899999999998753
No 45
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.93 E-value=1.5e-08 Score=102.68 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
...+.++|.+.+++.|++++++++|.+|..++ +++ .|+ .+| ++.||.||+|++.+.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcch
Confidence 46899999999999999999999999998876 544 466 555 799999999999875
No 46
>KOG2820|consensus
Probab=98.89 E-value=1.2e-06 Score=81.89 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCC-CCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCC
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSD-KRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPK 295 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~-~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~ 295 (523)
..-.+++...++++|+.++-+..|..|...++ +..+.|+ ++|..|.|+.+|+|+++|. ++||+.
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi--~klL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI--NKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH--HhhcCc
Confidence 45677888999999999999999999985322 5556777 8898899999999999997 578874
No 47
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.86 E-value=9.8e-08 Score=97.66 Aligned_cols=58 Identities=22% Similarity=0.223 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~ 287 (523)
...++..|.+.++++|++|+++++|++|..++ +++++|+.++.++.||+||+|++++.
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGGGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCCcEEeCCEEEECCCcch
Confidence 45788999999999999999999999999877 66666764455899999999999986
No 48
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.83 E-value=3.6e-08 Score=103.64 Aligned_cols=58 Identities=26% Similarity=0.253 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CC--eEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NG--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g--~~~~ad~vI~a~~~~~ 287 (523)
...++.++++.+.++|++|+.+++|++|..++ +++++|+ . +| .++.|+.||+|+++|.
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 35788889999999999999999999999887 7887776 3 23 3789999999999986
No 49
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.83 E-value=1.1e-07 Score=97.09 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC----CeEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN----GLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~----g~~~~ad~vI~a~~~~~ 287 (523)
...++..|.+.+++.|++|+.+++|++|..++ +.++... .+ +.+++||+||+|++++.
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 45788899999999999999999999999866 5543222 22 23789999999999986
No 50
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.73 E-value=2.2e-07 Score=96.02 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
...++..|++.+++.|++|+.+++|++|.. + + .+.|+ .+| ++.||+||+|++++.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~-~-~~~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-G-Q-PAVVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-C-C-ceEEEeCCc-EEECCEEEEcccccc
Confidence 468899999999999999999999999975 3 3 24566 555 799999999999885
No 51
>KOG1439|consensus
Probab=98.69 E-value=3.9e-06 Score=80.43 Aligned_cols=249 Identities=16% Similarity=0.156 Sum_probs=131.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeeccc------C-C-------------ceeccchhhhhhhhhhhhc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEII------P-G-------------FQFSRASYLLSLLRPHIYK 60 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~------~-G-------------~~~d~g~~~~~~~~~~~~~ 60 (523)
|-|+.=..-+..|+.+|.+|+.+|||+.-||..+|.... + + +..|.-+-++ +....+++
T Consensus 11 GTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~l-mAn~~Lvk 89 (440)
T KOG1439|consen 11 GTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFL-MANGELVK 89 (440)
T ss_pred cCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhh-hccchHHH
Confidence 445555556677899999999999999999998876511 0 0 0111111111 11123333
Q ss_pred cc---cccccCceEeecCCCCcccCCCCcccCCCCceeecCCHH-HHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhh
Q psy893 61 DL---ELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQ-KNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLF 136 (523)
Q Consensus 61 ~l---gl~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (523)
.| ++.++ +++...+... ++ . +|+.+.++.+.. .+...+..++ +...+.+|+..+..+.+.-..
T Consensus 90 ~Li~T~V~~Y-L~fk~i~gsf--v~-~-----~~k~~KVP~t~~Ea~~s~lmgl~--eKrr~~kFl~~V~n~~e~~~~-- 156 (440)
T KOG1439|consen 90 ILIHTGVTRY-LEFKSISGSF--VY-K-----KGKIYKVPATEAEALTSPLMGLF--EKRRVMKFLKFVLNYDEEDPK-- 156 (440)
T ss_pred HHHHhchhhh-eEEEeecceE--EE-E-----CCeEEECCCCHHHHhcCCccchh--HHHHHHHHHHHHhhhhhhccc--
Confidence 33 44444 5555544321 11 2 166677776532 2222222221 344455555555554432111
Q ss_pred hcCCCChhhHHHHHHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhh-hccCCCCCCCcc--hHHHHHHHHhh
Q psy893 137 DIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDG-LIGAMVSPHSPS--TSYVLLHHVMG 213 (523)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~ 213 (523)
.+..+ .....++.+++.+++.......+..... .+.....-+.+. +.--+.-++-+
T Consensus 157 -----~~~~~----------------~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S 215 (440)
T KOG1439|consen 157 -----TWQGY----------------DLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRS 215 (440)
T ss_pred -----ccccc----------------ccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHH
Confidence 11100 0001255667777776554443332111 111000011111 11111112111
Q ss_pred cccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCC
Q psy893 214 GAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTT 284 (523)
Q Consensus 214 ~~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~ 284 (523)
...+....+-||..|.+.|++.+++...-.|++..+|.++.+|....++++.+|+..++...+..||+..+
T Consensus 216 ~~~yg~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpS 286 (440)
T KOG1439|consen 216 FARYGKSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPS 286 (440)
T ss_pred HhhcCCCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCc
Confidence 11222223558999999999999999988899999999999999944388887775565677888887533
No 52
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.69 E-value=8.2e-08 Score=89.05 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=52.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecc-cCCcee-ccchhhhhhhhhhhhccc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI-IPGFQF-SRASYLLSLLRPHIYKDL 62 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~-~~G~~~-d~g~~~~~~~~~~~~~~l 62 (523)
|||++|+..|..|++.|++|+|+||++++||-|-+... ..|..+ -.|+|+|+..+..+|+-+
T Consensus 8 GaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv 71 (374)
T COG0562 8 GAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYV 71 (374)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHH
Confidence 89999999999999999999999999999999987652 256654 679999877777777665
No 53
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.69 E-value=2.7e-07 Score=95.02 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHH----CC--cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQA----SG--AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~----~G--~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
...++.+|.+.+++ .| ++|+++++|+.|..++ +..+.|+ .+| ++.||+||++++++.
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhH
Confidence 46899999999998 78 7899999999999886 5566677 555 799999999999986
No 54
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.67 E-value=4.6e-07 Score=90.97 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
...++..|.+.+.+. |++|+.+++|.+|.. + .|+ .+| +++||+||+|++++. ..|++
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~g-~i~a~~VV~A~G~~s--~~l~~ 202 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSRG-DVHADQVFVCPGADF--ETLFP 202 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCCC-cEEeCEEEECCCCCh--hhhCc
Confidence 357888899888775 999999999999963 3 355 555 578999999999986 35654
No 55
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.64 E-value=5.6e-07 Score=89.52 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHc----CCcEEEEccCCCCCcceeeec-ccCCceeccc
Q psy893 1 EAGHNGLVSAAYLARA----GLSVAVLERRHVLGGAAVTEE-IIPGFQFSRA 47 (523)
Q Consensus 1 GaG~~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~-~~~G~~~d~g 47 (523)
|+|+++|+||.+|-|. |.+|+|||+++.+||.+.+.. ...||..-.|
T Consensus 9 GsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgG 60 (500)
T PF06100_consen 9 GSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGG 60 (500)
T ss_pred CCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCC
Confidence 8999999999999986 579999999999999987654 3467776555
No 56
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.63 E-value=8.9e-07 Score=90.86 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=51.9
Q ss_pred ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECC-CCCeEEEE-e-CCeEEEcCEEEEcCChH
Q psy893 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDS-DKRASGVV-T-NGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~~~~v~-~-~g~~~~ad~vI~a~~~~ 286 (523)
++.++...+++.|.+.+++.|++|+++++|++|..++ ++++++|. . ++.++.|+.||+|++..
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 4556677899999999999999999999999998862 27788877 3 34588999999999853
No 57
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.62 E-value=6.2e-07 Score=92.35 Aligned_cols=58 Identities=22% Similarity=0.185 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g~--~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+++.|++|+++++|++|..++++++++|+ . +++ .+.++.||+|++...
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 478899999999999999999999999986437888877 3 343 468899999988654
No 58
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.61 E-value=1.6e-06 Score=90.04 Aligned_cols=61 Identities=33% Similarity=0.322 Sum_probs=50.6
Q ss_pred cCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CC--eEEEcCEEEEcCChH
Q psy893 225 PEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NG--LEIKAKYVLSNTTAK 286 (523)
Q Consensus 225 ~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g--~~~~ad~vI~a~~~~ 286 (523)
+.++...+...|.+.+++.|++|+++++|++|..++ +++++|+ . ++ ..+.|+.||+|++..
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELDD-GRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 445567899999999999999999999999999877 8888887 3 23 367899999999854
No 59
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.59 E-value=7.7e-07 Score=96.23 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=50.4
Q ss_pred ecCCC---HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 224 YPEGG---MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 224 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
++.+| ...++.+|.+.+++ |++|+.+++|++|..++ ++++ |+ .+|..+.||+||+|++++.
T Consensus 399 ~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~-~~~~-v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 399 YPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED-DGWQ-LDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred eCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC-CEEE-EEECCCcEEECCEEEECCCCCc
Confidence 56565 35889999999988 99999999999999876 6554 66 6666678999999999986
No 60
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.58 E-value=4.9e-07 Score=92.48 Aligned_cols=59 Identities=34% Similarity=0.443 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 228 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
+...+.+.|.+.++++|++|+++++|+++..++ ++|++|. . +|+ ++.|+.||+|++-..
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 456899999999999999999999999999988 8999998 5 455 578999999988765
No 61
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.58 E-value=3.7e-06 Score=88.51 Aligned_cols=62 Identities=24% Similarity=0.385 Sum_probs=50.2
Q ss_pred ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEc-CEEEEcCChHH
Q psy893 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKA-KYVLSNTTAKC 287 (523)
Q Consensus 224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~a-d~vI~a~~~~~ 287 (523)
+..+| +.|+..|.+.+++.|++|+++++|+++..++ ++|++|. .+|+ .+.| +.||+|++-..
T Consensus 212 ~~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 212 YAAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDG-GRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred ccCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecC-CEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 44556 8999999999999999999999999998776 8999987 4553 3556 47999888654
No 62
>PRK07121 hypothetical protein; Validated
Probab=98.57 E-value=2.4e-06 Score=89.22 Aligned_cols=60 Identities=30% Similarity=0.343 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEc-CEEEEcCChHH
Q psy893 228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKA-KYVLSNTTAKC 287 (523)
Q Consensus 228 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~a-d~vI~a~~~~~ 287 (523)
+...+.+.|.+.+++.|++|+++++|++|..++++++++|+ .+++ .+.| +.||+|++...
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 45678999999999999999999999999987537898887 3443 5788 99999998654
No 63
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.52 E-value=1.9e-06 Score=90.00 Aligned_cols=56 Identities=27% Similarity=0.322 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--e-CCe--EEEcCEEEEcCChH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--T-NGL--EIKAKYVLSNTTAK 286 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~-~g~--~~~ad~vI~a~~~~ 286 (523)
..+++.|.+.+++.|++|+++++|++|..++ +++++|+ . +++ ++.|+.||++++..
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~-g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKD-GKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecC-CEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 4688899999999999999999999998876 8888876 2 332 68899999999854
No 64
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.51 E-value=4.4e-06 Score=88.72 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CCe-EEEcC-EEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NGL-EIKAK-YVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g~-~~~ad-~vI~a~~~~~ 287 (523)
..+.+.|.+.+++.|++|+++++|++|..++ +++++|+ . +++ .+.++ .||+|++...
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG-GRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 6789999999999999999999999999887 8888887 3 233 46786 6999888664
No 65
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.47 E-value=4.2e-06 Score=88.70 Aligned_cols=59 Identities=24% Similarity=0.274 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcC-EEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAK-YVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad-~vI~a~~~~~ 287 (523)
...++..|.+.+++.|++|+++++|++|..+++++|++|. .+|+ .+.|+ .||+|++-..
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 3578888888999999999999999999997448999987 4554 46787 4999888654
No 66
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.47 E-value=2.7e-06 Score=86.56 Aligned_cols=61 Identities=25% Similarity=0.336 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---Ce--EEEcCEEEEcCChHHHHHhhCC
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---GL--EIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g~--~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+|+...+..+.++|.+++..++|+++..++ + +++|+ .| |+ +++|+.||.|++||. .+++.
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~--d~i~~ 230 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDRETGETYEIRARAVVNAAGPWV--DEILE 230 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEecCCCcEEEEEcCEEEECCCccH--HHHHH
Confidence 3788888888999999999999999999998 6 88888 43 33 578999999999997 35543
No 67
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.46 E-value=3e-06 Score=79.98 Aligned_cols=59 Identities=32% Similarity=0.437 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC-----------CeEEEcCEEEEcCChHHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN-----------GLEIKAKYVLSNTTAKCT 288 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~-----------g~~~~ad~vI~a~~~~~~ 288 (523)
..+...|.+.+.+.|++|+.++.|++|..++++++.+|. .. ..++.|+.||.|++.+..
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 477888999999999999999999999886624787776 31 247899999999987653
No 68
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.46 E-value=5.3e-06 Score=83.99 Aligned_cols=58 Identities=28% Similarity=0.315 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893 228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 228 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~ 287 (523)
....+.+.|.+.+++.|++|+++++|++|..++ + .+.|+.+++++.+|.||+|++...
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEECCcEEEcCEEEECCCCcc
Confidence 457899999999999999999999999998765 4 344555566899999999999754
No 69
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.43 E-value=7.1e-06 Score=87.58 Aligned_cols=59 Identities=25% Similarity=0.346 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECC-CCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDS-DKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
...++.+|++.++++|++|+.+++|++|..++ ++++++|+ . +++ ++.||.||+|+++|.
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 45899999999999999999999999998763 26777765 2 344 579999999999995
No 70
>KOG2844|consensus
Probab=98.42 E-value=6.6e-05 Score=76.56 Aligned_cols=62 Identities=29% Similarity=0.437 Sum_probs=53.3
Q ss_pred ecCCC---HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 224 YPEGG---MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 224 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
.|..| ...++.+|+..+++.|+.|..|++|++|.... ++..+|. .-| .+++.+||.|++.|+
T Consensus 178 ~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~-~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 178 SPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVET-DKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred cCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeec-CCccceeccCc-ceecceEEechhHHH
Confidence 44444 46899999999999999999999999999987 6667898 555 789999999999997
No 71
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.40 E-value=5.9e-06 Score=77.71 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCC--CeEEEE-eC-----------CeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDK--RASGVV-TN-----------GLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~--~~~~v~-~~-----------g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+.+.|++|+.++.|++|..++ + ++.+|. .. ..+++|+.||.|++...
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~-~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRD-DTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 3677888888889999999999999999877 5 677876 31 24789999999988654
No 72
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.40 E-value=1.8e-05 Score=84.09 Aligned_cols=57 Identities=30% Similarity=0.363 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEc-CEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKA-KYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~a-d~vI~a~~~~~ 287 (523)
..++..|.+.+++.|++|+++++|++|..++ +++++|+ .++. ++.| +.||+|++.+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRED-GRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 5788999999999999999999999998876 8888887 3333 5788 89999998875
No 73
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.39 E-value=9.9e-06 Score=83.73 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=48.5
Q ss_pred ecCCC---HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCC--eEEEcCEEEEcCChHH
Q psy893 224 YPEGG---MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNG--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 224 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g--~~~~ad~vI~a~~~~~ 287 (523)
.+.+| ...++.+|.+.+++.|++|+++++|++|..++++.+. |+ .+| .+++||+||+|++.+.
T Consensus 169 ~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 169 AAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred eCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcch
Confidence 44444 4689999999999999999999999999986523332 33 223 3689999999999886
No 74
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.36 E-value=8.4e-06 Score=86.05 Aligned_cols=57 Identities=30% Similarity=0.408 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcC-EEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAK-YVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad-~vI~a~~~~~ 287 (523)
..|+..|.+.+++.|++|+++++|++|..++ ++|++|+ .+|+ .+.|+ .||+|++-..
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED-GRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 4788999999999999999999999999887 8999988 4564 46785 6998887654
No 75
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.34 E-value=8.5e-06 Score=82.47 Aligned_cols=55 Identities=29% Similarity=0.334 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+++.|++.++++| ..+..+++|..+..+ . +++.|. .+| ++.||+||+|++++.
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g-~i~a~~vv~a~G~~~ 212 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGG-TIEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCc-cEEeCEEEEcCchHH
Confidence 688999999999999 566669999999876 1 456677 555 499999999999986
No 76
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.34 E-value=3.7e-07 Score=80.27 Aligned_cols=34 Identities=50% Similarity=0.796 Sum_probs=32.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+||+||++||++|.+|+|+||+-.+||-++
T Consensus 37 GaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 37 GAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred CcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 8999999999999999999999999999999875
No 77
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.34 E-value=1.9e-05 Score=83.90 Aligned_cols=58 Identities=26% Similarity=0.307 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEc-CEEEEcCChHHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKA-KYVLSNTTAKCT 288 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~a-d~vI~a~~~~~~ 288 (523)
..+...|.+.++++|++|+++++|++|..++ +++++|. .+|+ ++.| +.||+|++....
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDH-GRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 4788999999999999999999999998876 8899987 4444 4676 689999987653
No 78
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.30 E-value=5.6e-06 Score=84.69 Aligned_cols=61 Identities=26% Similarity=0.310 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhh
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDL 292 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~l 292 (523)
.+-+.|.+.+++.|++|+.+++|++|..++ +++++++.+|+++.||.||.|.+....+.+-
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~ 169 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEADGDVIEAKTVILADGVNSILAEK 169 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEEcCCcEEECCEEEEEeCCCHHHHHH
Confidence 556677888888999999999999998876 7666566667789999999999887644443
No 79
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.28 E-value=1.3e-05 Score=81.98 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~ 287 (523)
...+.+.|.+.+++. |++|+++++|++|..++ +++++|. .+++ ++.|+.||+|++...
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~-~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEND-NTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC-CEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 346888999888764 89999999999998876 8888865 4554 588999999988743
No 80
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.28 E-value=2.6e-05 Score=80.74 Aligned_cols=58 Identities=24% Similarity=0.373 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
...+.++|.+.+++.| ++|+++++|++|..++++.+. |. . +|+ +++|++||++++.+.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcch
Confidence 4689999999999987 799999999999986524343 33 2 343 689999999999886
No 81
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.27 E-value=1.8e-05 Score=77.42 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
...+++.|.+.+++.|++|+++++|..|+..+ +.+.+|+ .+|+++.+|+||+|.+...
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccCCcEEecCEEEEccCcch
Confidence 56789999999999999999999999999988 7777888 8999999999999988654
No 82
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.27 E-value=2.8e-05 Score=79.98 Aligned_cols=59 Identities=25% Similarity=0.291 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEE-EE--eCCe--EEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASG-VV--TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~-v~--~~g~--~~~ad~vI~a~~~~~ 287 (523)
...+.++|.+.+.+ .|++|+++++|..|..++++.++. ++ .+|+ +++||+||+|++.+.
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 45788999998865 489999999999998873255432 21 2342 689999999999986
No 83
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.26 E-value=1.2e-05 Score=81.44 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPK 295 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~ 295 (523)
.+-+.|++.+++.|++++.++.|..+..++ ++++.++ .++.+++|+.||.|.++...+.+.+..
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~ 160 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGL 160 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCC
Confidence 556678999999999999999999999988 5554444 555789999999999988766665543
No 84
>PRK12839 hypothetical protein; Provisional
Probab=98.25 E-value=7.7e-05 Score=78.88 Aligned_cols=58 Identities=29% Similarity=0.350 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCCe-EE-EcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNGL-EI-KAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~-~~-~ad~vI~a~~~~~ 287 (523)
..|+..|.+.+++.|++|+.+++|++|..++++++++|. .+|+ .+ .++.||+|++...
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 478889999999999999999999999876438899987 2443 33 4488999988764
No 85
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.25 E-value=2.2e-05 Score=83.10 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
..+...|.+.+.+.|++|+.++.++++..++ |+|+||. . +|+ .+.|+.||+|++-..
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN-KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC-CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4688889998888899999999999999987 9999987 3 333 578999999998754
No 86
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.23 E-value=1.4e-05 Score=80.94 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+.+.|.+.+.+.| ++|+.+++|++|..++ +++ .|+ .+|+++.+|.||.|.+.+..+.+.+.
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~~~~vi~adG~~S~vr~~l~ 170 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS-DHV-ELTLDDGQQLRARLLVGADGANSKVRQLAG 170 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Cee-EEEECCCCEEEeeEEEEeCCCCCHHHHHcC
Confidence 67888899888888 9999999999998876 655 466 78888999999999888766666554
No 87
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.23 E-value=3.5e-05 Score=80.57 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---Ce--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---GL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g~--~~~ad~vI~a~~~~~ 287 (523)
..++..+++.+.++|++++.+++|++|..++ +. ++|+ .+ |+ ++.|+.||.|+++|.
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARREN-GL-WHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-CE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 5778888888999999999999999998865 54 4555 32 43 689999999999986
No 88
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.23 E-value=2.5e-05 Score=82.99 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~ 287 (523)
..+...|.+.+++.|++|+.++.|++|..++ +++++|. .+|+ .+.|+.||+|++...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 4688889998988999999999999999887 8888876 2454 578999999999764
No 89
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.20 E-value=3.3e-05 Score=82.15 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHH----CCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChH
Q psy893 231 AVSQALARSAQA----SGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAK 286 (523)
Q Consensus 231 ~l~~~l~~~~~~----~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~ 286 (523)
.+...|.+.+++ .|++|++++.|++|..+++++++||. . +|+ .+.|+.||+|++-.
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 556666655544 37999999999999886536899987 3 453 57899999999865
No 90
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.19 E-value=2.8e-05 Score=83.26 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 232 VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 232 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
+.+.|.+.+++.|++|++++.|++|..++ ++|+||. . +|+ .+.|+.||+|++-..
T Consensus 172 l~~~L~~~~~~~gV~i~~~t~v~~Li~d~-g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 172 AYQALSRQIAAGTVKMYTRTEMLDLVVVD-GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHHHhcCCEEEeceEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 34667778888899999999999999877 8899987 3 454 578999999998754
No 91
>PRK07588 hypothetical protein; Provisional
Probab=98.19 E-value=1.3e-05 Score=81.34 Aligned_cols=60 Identities=10% Similarity=0.157 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI 293 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll 293 (523)
.|.+.|.+.+. .|++|+++++|++|+.++ +.+. |+ .+|+++++|.||.|-+.+...++.+
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~~d~vIgADG~~S~vR~~~ 164 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHR-DGVR-VTFERGTPRDFDLVIGADGLHSHVRRLV 164 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECC-CeEE-EEECCCCEEEeCEEEECCCCCccchhhc
Confidence 45555666553 379999999999999876 5543 66 7888899999999999887666654
No 92
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.17 E-value=7.3e-05 Score=79.42 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
-..|...|.+.+.+.|++|++++.|+++..+++++++||. . +|+ .+.|+.||+|++-..
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 3578899999888889999999999999986338899987 2 454 578999999988764
No 93
>PRK10015 oxidoreductase; Provisional
Probab=98.16 E-value=2.6e-05 Score=79.70 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHh
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLD 291 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ 291 (523)
.+-+.|.+.+++.|++++.+++|+.|..++ +++++|..++.++.||.||.|.+....+.+
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~ 168 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQAGDDILEANVVILADGVNSMLGR 168 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEeCCeEEECCEEEEccCcchhhhc
Confidence 455667888888999999999999998876 777666655668999999999997664433
No 94
>PRK06847 hypothetical protein; Provisional
Probab=98.15 E-value=2e-05 Score=79.34 Aligned_cols=62 Identities=26% Similarity=0.314 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI 293 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll 293 (523)
..+.+.|.+.+++.|++|+++++|++|..++ +++ .|. .+|+++.+|.||.|.+.+....+.+
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~ad~vI~AdG~~s~~r~~l 169 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDD-DGV-TVTFSDGTTGRYDLVVGADGLYSKVRSLV 169 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC-CEE-EEEEcCCCEEEcCEEEECcCCCcchhhHh
Confidence 3677888888888899999999999998876 544 466 7888899999999999876555444
No 95
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.15 E-value=3.7e-05 Score=81.29 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcC-EEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAK-YVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad-~vI~a~~~~~ 287 (523)
...+...|.+.+++.|++|+++++|++|..++ ++|++|+ .+|+ .+.|+ .||+|++-..
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~ 269 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED-GRVTGVHAAESGEPQLIRARRGVILASGGFE 269 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-CEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence 34688889999999999999999999999877 8898887 3554 47786 5998776543
No 96
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.15 E-value=5.5e-05 Score=79.27 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcC-EEEEcCChHH
Q psy893 230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAK-YVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad-~vI~a~~~~~ 287 (523)
..+...|.+.+.+. |++|+++++|++|..++ ++|++|+ .+|+ ++.|+ .||+|++-..
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~-g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVED-GRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-CEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 36777777777665 89999999999999886 8999987 4553 57886 6888888653
No 97
>PRK06184 hypothetical protein; Provisional
Probab=98.15 E-value=2.1e-05 Score=82.46 Aligned_cols=63 Identities=10% Similarity=0.162 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+.+.|++|+++++|++|..++ +.++... .++++++||.||.|.+.+...++.+.
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~-~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDA-DGVTARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcC-CcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 455677888888899999999999999877 5554322 34568999999999999987777764
No 98
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.14 E-value=2.1e-05 Score=79.54 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 230 GAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
..+.+.|.+.+.+ .|++++.+++|++|..++ +.+ .|+ .+|++++||.||.|.+.+..+.+.+.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~-~~~-~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQ-DYV-RVTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC-CeE-EEEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 4678888888888 499999999999998876 554 466 67878999999999998876666654
No 99
>PRK07190 hypothetical protein; Provisional
Probab=98.14 E-value=3.8e-05 Score=79.69 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+++.|++|+++++|++|..++ +.++ +. .+|++++|+.||.|.+.+...++.+.
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~-~~v~-v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQ-AGCL-TTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeeE-EEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 455667778888999999999999999887 5543 44 67778999999999999887777664
No 100
>PRK07045 putative monooxygenase; Reviewed
Probab=98.12 E-value=4.6e-05 Score=77.19 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhh
Q psy893 231 AVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDL 292 (523)
Q Consensus 231 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~l 292 (523)
.|.+.|.+.+.+ .|++++++++|+.|..++++.++.|+ .+|+++++|.||.|-+.....++.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence 566777777754 47999999999999987635445677 788899999999999988777774
No 101
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.11 E-value=4.2e-05 Score=77.30 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-e-CCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 229 MGAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-T-NGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~-~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
...|-+.|.+.+.+.+ ++++.+++|+.|..++ +.+. ++ . +|++++||.||-|=+.+..+++.+.
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 3478889999998887 8999999999999998 6776 66 6 9999999999999888887788776
No 102
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.11 E-value=3.5e-05 Score=78.12 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
..+.+.|.+.+++.|++++.+++|++|..++ +.+ .|+ .+|++++||.||.|.+.+..+.+.+.
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g 176 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDA-DRV-RLRLDDGRRLEAALAIAADGAASTLRELAG 176 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecC-CeE-EEEECCCCEEEeCEEEEecCCCchHHHhhc
Confidence 3677888888888999999999999999876 554 366 67888999999999998766666553
No 103
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.10 E-value=1.9e-06 Score=76.40 Aligned_cols=34 Identities=53% Similarity=0.754 Sum_probs=28.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+||+||++|+++|++|+|+|++..+||.++
T Consensus 24 GaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 24 GAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp --SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred CCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 8999999999999999999999999999999865
No 104
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.09 E-value=5.3e-05 Score=79.24 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC----eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG----LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g----~~~~ad~vI~a~~~~~ 287 (523)
..++..+++.++++|++++.+++|++|..++ +. ++|+ .++ .++.|+.||.|+++|.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~-~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREG-GL-WRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC-CE-EEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 5788888888999999999999999999875 43 4565 443 3589999999999986
No 105
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.07 E-value=0.00015 Score=76.46 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e------CC--eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T------NG--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~------~g--~~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+++.|++|+.++.|.+|..++++++++|. . ++ ..+.|+.||+|++...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 578899999999999999999999999887536888876 4 12 3578999999998754
No 106
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.06 E-value=9.3e-05 Score=79.47 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 228 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
....+...|.+.+.+.|++|+.++.|.+|..++ ++++||. . +|+ .+.|+.||+|++...
T Consensus 156 tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 156 TGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDG-KRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 345678889998999999999999999999877 8888877 3 454 467999999998764
No 107
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.06 E-value=9.9e-05 Score=84.50 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHC---CcEEEeCceeeEEEECCC----C----CeEEEE-e-----CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQAS---GAQLFTSQTVTEITLDSD----K----RASGVV-T-----NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~---G~~i~~~~~V~~I~~~~~----~----~~~~v~-~-----~g~--~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+++. |++|+++++|+++..+++ | +|+||. . +|+ .+.|+.||+|++-..
T Consensus 544 ~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~ 620 (1167)
T PTZ00306 544 FTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFS 620 (1167)
T ss_pred HHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcc
Confidence 45677777777654 899999999999998631 2 788887 3 454 578999999988654
No 108
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.05 E-value=3.1e-05 Score=78.88 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
..+.+.|.+.+.+.|++|+.+++|++|..++ +.+ .|+ .+|+++.||.||.|.+.+..+.+.+.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g 174 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRD-EGV-TVTLSDGSVLEARLLVAADGARSKLRELAG 174 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CEE-EEEECCCCEEEeCEEEEcCCCChHHHHHcC
Confidence 4778888998888999999999999998876 544 466 77888999999999988766666654
No 109
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.05 E-value=7e-05 Score=72.58 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+++.|++++++++|++|..++ +++. +. .++.+++||.||.|.+....+.+.++
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~ 155 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD-DRVV-VIVRGGEGTVTAKIVIGADGSRSIVAKKLG 155 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-CEEE-EEEcCccEEEEeCEEEECCCcchHHHHhcC
Confidence 567788888888999999999999998877 5543 43 44568999999999998765555443
No 110
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.04 E-value=0.00014 Score=77.78 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEE-CCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITL-DSDKRASGVV----TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~ 287 (523)
..+...|.+.+++.|++|+.++.|+++.. ++ +++.||. .+|+ .+.|+.||+|++-..
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 47889999999999999999999999988 45 8898886 2454 578999999987653
No 111
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.03 E-value=0.00018 Score=76.70 Aligned_cols=58 Identities=21% Similarity=0.285 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
..+...|.+.+++.|++|+.++.|+++..+++++|+||. . +|+ .+.|+.||+|++-..
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 468899999999999999999999999886536788886 2 454 678999999988754
No 112
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.03 E-value=0.00022 Score=73.77 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+++.|++++.+ .|+.+..++ +++++|..+++.+.|+.||+|++.+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g~v~Gv~~~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKN-GKAYGVFLDGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-CEEEEEEECCEEEEeCeEEECCCcCc
Confidence 478899999999999999876 788888766 78888876677899999999999875
No 113
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.02 E-value=5e-05 Score=77.38 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPK 295 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~ 295 (523)
.+.+.|.+.+++.|++|+.+++|++|+.++ +.+ .|+ .+|++++||.||.|.+.+...++++..
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v-~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSG-DDW-LLTLADGRQLRAPLVVAADGANSAVRRLAGC 176 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcC-CeE-EEEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence 567788888888899999999999999876 554 466 788889999999999998877777653
No 114
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.02 E-value=0.00017 Score=77.15 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+.+.|++|+.++.+.++..++++++.||. . +|+ .+.|+.||+|++-..
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 478899999888899999999999998876338888887 2 454 578999999988754
No 115
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.02 E-value=0.00023 Score=76.03 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+++.| ++|+.++.|.+|..++ +++++|. .+|+ .+.|+.||+|++...
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 357778888888876 9999999999998877 8888874 2453 688999999999765
No 116
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=8.2e-05 Score=79.06 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~ 287 (523)
-..+.+.|.+.+++.|++|+.++.|.+|..++ +++.||. .+|+ .+.|+.||+|++...
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILED-NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 35788999999999999999999999998876 8888775 2554 578999999998864
No 117
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.99 E-value=4.7e-05 Score=76.84 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe--EEEcCEEEEcCChH
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL--EIKAKYVLSNTTAK 286 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~--~~~ad~vI~a~~~~ 286 (523)
.+.+.|.+.+++.|++|+++++|.++..++ +++..+. .+|+ .++||.||+|++..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 799999999999999999999999999877 7776665 4553 58999999998854
No 118
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.98 E-value=0.00011 Score=77.43 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECC-CCCeEEEE--eCCe--EEEcCEEEEcCChH
Q psy893 229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDS-DKRASGVV--TNGL--EIKAKYVLSNTTAK 286 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~-~~~~~~v~--~~g~--~~~ad~vI~a~~~~ 286 (523)
-..+.+.|.+.+++. |++|++++.|.++..++ +++++||. .+|+ .+.|+.||+|++-.
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 357888999888765 89999999999998863 27888887 5564 37899999999874
No 119
>PRK08275 putative oxidoreductase; Provisional
Probab=97.98 E-value=0.00015 Score=76.79 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+++.|++|+.++.|++|..++++++.+|. . +|+ .+.|+.||+|++...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 468889999999999999999999999987327888876 2 454 478999999998764
No 120
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.97 E-value=0.00021 Score=75.56 Aligned_cols=34 Identities=50% Similarity=0.658 Sum_probs=31.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC--CCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH--VLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~--~~GG~~~ 34 (523)
|+|.+||+||..++++|.+|+||||.+ .+||.+.
T Consensus 11 G~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 11 GAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 899999999999999999999999999 7899764
No 121
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.97 E-value=0.00018 Score=76.03 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--e--CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--T--NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~--~g~--~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+++.|++|++++.|+++..++++++++|. . +|+ .+.|+.||+|++-..
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 578889999898899999999999999887623488876 2 454 578999999998754
No 122
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.96 E-value=8.7e-05 Score=75.38 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893 231 AVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI 293 (523)
Q Consensus 231 ~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll 293 (523)
.+.+.|.+.+.+.+ ++++.+++|++|..++ +.+. |+ .+|+++.||.||.|.+.+....+.+
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vV~AdG~~S~~r~~~ 172 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG-DGVT-VFDQQGNRWTGDALIGCDGVKSVVRQSL 172 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCC-CceE-EEEcCCCEEecCEEEECCCcChHHHhhc
Confidence 46677888887775 8999999999998776 5543 66 7888899999999999887655444
No 123
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.96 E-value=0.00035 Score=72.87 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eC-C--eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TN-G--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~-g--~~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+++ .|++|+.++.|++|..++ +++++|. .+ + ..+.|+.||+|++...
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET-GRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-CEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4788999999987 689999999999998876 7888887 32 3 3679999999999875
No 124
>PRK06834 hypothetical protein; Provisional
Probab=97.94 E-value=8.9e-05 Score=77.05 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+++.|++|+.+++|++|..++ +.+ .|+ .+|++++||.||.|.+.+....+++.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-~~v-~v~~~~g~~i~a~~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDD-TGV-DVELSDGRTLRAQYLVGCDGGRSLVRKAAG 163 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CeE-EEEECCCCEEEeCEEEEecCCCCCcHhhcC
Confidence 566778888888899999999999999887 544 355 67778999999999988876666654
No 125
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.93 E-value=0.00041 Score=73.87 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
..|.+.|.+.+.+.|++++.++.|.++..++++++.||. . +|+ .+.|+.||+|++-..
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 468899999888999999999999999986437888886 2 454 578999999988754
No 126
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.93 E-value=0.00021 Score=76.47 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHC--------C-----cEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQAS--------G-----AQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~--------G-----~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~ 287 (523)
...+.+.|.+.+++. | ++|+.++.|.+|..++ +++.+|. .+|+ .+.|+.||+|++...
T Consensus 137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC-CEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 346888888888776 7 9999999999999876 8888875 2454 578999999999743
No 127
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.93 E-value=7.4e-05 Score=76.42 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-e-CC--eEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-T-NG--LEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~-~g--~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+.+.|.+.+.+. |++++++++|++|..++ +.+ .|+ . ++ .+++||.||.|-+.+...++.+.
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~-~~~-~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~ 188 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQ-DAA-TVTLEIEGKQQTLQSKLVVAADGARSPIRQAAG 188 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-Cee-EEEEccCCcceEEeeeEEEEeCCCCchhHHHhC
Confidence 5677788877775 69999999999998876 544 355 3 23 36899999999998876666654
No 128
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.93 E-value=8.8e-05 Score=75.18 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEE-CCCCCeEEEE--eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITL-DSDKRASGVV--TNGL--EIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+.+.|.+.+.+.|++++++++|++|.. ++ +. ..|+ .+|+ +++||.||-|-+.+...++.++
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~-~~-~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~ 170 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDS-DR-PYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIP 170 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCC-Cc-eEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence 4566677777788999999999999986 33 33 3455 4664 6899999999888877777764
No 129
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.91 E-value=6.8e-05 Score=75.95 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 230 GAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
..+.+.|.+.+++.| ++++ ++.|++|..++ +.+ .|+ .+|++++||.||.|.+.+..+++.+.
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVDP-DAA-TLTLADGQVLRADLVVGADGAHSWVRSQAG 174 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEecC-CeE-EEEECCCCEEEeeEEEEeCCCCchHHHhcC
Confidence 367788888888887 8998 99999998776 544 466 67778999999999998765666654
No 130
>PLN02815 L-aspartate oxidase
Probab=97.90 E-value=0.00023 Score=75.42 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCC---CeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDSDK---RASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~---~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
..+...|.+.+++. |++|+.++.+.++..++++ +|+||. . +|+ .+.|+.||+|++-..
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 46888898888776 8999999999999985424 277876 2 454 568999999998654
No 131
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.90 E-value=0.00036 Score=72.54 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=39.5
Q ss_pred HCC-cEEEeCceeeEEEECCC--CCeEEEE-e---CCe--EEEcCEEEEcCChHHHHHhhC
Q psy893 242 ASG-AQLFTSQTVTEITLDSD--KRASGVV-T---NGL--EIKAKYVLSNTTAKCTLLDLI 293 (523)
Q Consensus 242 ~~G-~~i~~~~~V~~I~~~~~--~~~~~v~-~---~g~--~~~ad~vI~a~~~~~~~~~ll 293 (523)
+.+ .+|++++.|.+|..+++ +++++|+ . +|+ +++|+.||+|++...+.+-|+
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL 285 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILV 285 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHH
Confidence 344 89999999999998753 3577776 2 454 578999999999988754443
No 132
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.90 E-value=0.00015 Score=73.39 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e-CCe--EEEcCEEEEcCChHHHHHhhCCC
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T-NGL--EIKAKYVLSNTTAKCTLLDLIPK 295 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~-~g~--~~~ad~vI~a~~~~~~~~~ll~~ 295 (523)
..+...|.+.+.+.|+++++++.++++...++.. ..|+ . +|+ +++||.||-|-+.+...++.++.
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~ 171 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPA 171 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence 3566677777878899999999988886533133 3466 4 775 68999999999988777777653
No 133
>PRK08244 hypothetical protein; Provisional
Probab=97.89 E-value=0.00019 Score=75.08 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCC-eEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNG-LEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g-~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+++.|++|+.+++|++|..++ ++++ |+ .+| ++++||.||.|.+.+...++++.
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDG-DGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcC-CeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhcC
Confidence 455667777778899999999999998877 5543 33 256 47999999999998876677664
No 134
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.88 E-value=0.00021 Score=74.84 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~ 287 (523)
...+.+.|.+.+++. |++|+.++.|++|..++ +++++|. .+++ .+.|+.||+|++-..
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD-GAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC-CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 357889999988876 89999999999998776 8888887 3343 578999999988754
No 135
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.88 E-value=0.0003 Score=74.86 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCC----cEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASG----AQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G----~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
..|...|.+.+++.+ ++++.++.++++..+++++|+||. . +++ .+.|+.||+|++-..
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 467788887776544 789999999999885438899988 3 343 468999999998764
No 136
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.87 E-value=0.00024 Score=75.56 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+.+ .|++|+.++.|.+|..++ ++++||. .+|+ .+.|+.||+|++-..
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN-GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4688888888876 589999999999998877 8888876 2554 578999999998764
No 137
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.84 E-value=0.00024 Score=75.28 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeE-EEE-eCCe-EEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRAS-GVV-TNGL-EIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~-~v~-~~g~-~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+.+. |++|+++++|++|..++ +.+. .++ .+|. +++||.||.|.+.+...++++.
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHD-DGVTLTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC-CEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 3445666777665 68999999999999876 5443 223 3454 6899999999998877777765
No 138
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.84 E-value=0.00022 Score=74.99 Aligned_cols=58 Identities=28% Similarity=0.306 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CC--eEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NG--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g--~~~~ad~vI~a~~~~~ 287 (523)
...++.++++.+.++|++|+.+++|++|..++ +++++|+ . +| .++.|+.||+|+++|.
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 45788999999999999999999999999877 7777766 3 34 2689999999999996
No 139
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.82 E-value=0.00015 Score=73.13 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=50.8
Q ss_pred ecCCC---HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 224 YPEGG---MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 224 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
++.+| ...++.+|.+.+++ |++|+.+++|.+|+.++ ++ +.|+ .+|+.+.||+||+|++++.
T Consensus 126 ~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~-~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 126 FPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG-EG-WQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred eCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-Ce-EEEEeCCCCEEEcCEEEEcCCccc
Confidence 55555 36899999999988 99999999999999876 55 4566 6776789999999999986
No 140
>KOG2404|consensus
Probab=97.81 E-value=0.00025 Score=66.24 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=31.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 33 (523)
|+|++||+|+..+-..|-.|+++|++...||-+
T Consensus 16 GgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 16 GGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred CCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 899999999999999998899999999999975
No 141
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.80 E-value=0.00019 Score=73.06 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+.+. |++|+++++|++|..++ +.+ .|+ .+|++++||.||.|-+.+..+++.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGE-SEA-WLTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC-CeE-EEEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 4555677777664 69999999999998876 544 466 78889999999999998776666654
No 142
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.78 E-value=0.00061 Score=72.29 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~ 287 (523)
-..|.+.|.+.+.+. |++++.++.|++|..++ +++.||. .+|+ .+.|+.||+|++-..
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD-GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 357888998888775 79999999999999887 8888876 2553 678999999998754
No 143
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.76 E-value=0.00032 Score=71.09 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+.+. |++++.+++|++|..++ +.+ .|+ .+|++++||.||.|.+.+..+++.+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDD-DGW-ELTLADGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC-CeE-EEEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence 4566777777776 89999999999998776 543 466 67878999999999998877767664
No 144
>PRK06185 hypothetical protein; Provisional
Probab=97.74 E-value=0.00034 Score=71.33 Aligned_cols=63 Identities=25% Similarity=0.268 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE---eCCe-EEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV---TNGL-EIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~-~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+.+.|.+.+.+. |++++.+++|++|..++ +++++|+ .+|+ +++||.||.|.+.+..+++.+.
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 5666777777664 79999999999999887 7776565 3564 7899999999998876666664
No 145
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.72 E-value=0.00083 Score=71.52 Aligned_cols=58 Identities=26% Similarity=0.308 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCC---CCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSD---KRASGVV----TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~---~~~~~v~----~~g~--~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+++.|++|+.++.|.+|..+++ ++++||. .+|+ .+.|+.||+|++-..
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 57889999999999999999999999987642 6788886 2454 578999999998764
No 146
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.72 E-value=0.00086 Score=71.31 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~ 287 (523)
..|.+.|.+.+.+. |++++.++.|++|..++ +++.||. .+|+ .+.|+.||+|++-..
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 46778888877775 79999999999999877 8888875 2553 678999999998754
No 147
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.71 E-value=0.0004 Score=73.44 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-e--CC--eEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-T--NG--LEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g--~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+.+. |++|+++++|++|+.++ ++++ |+ . +| ++++||.||-|-+.+...++.+.
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~-~~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg 181 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDD-DGVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTLG 181 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC-CeEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHcC
Confidence 3445666767664 89999999999999887 5543 44 3 56 47899999999999887777774
No 148
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.71 E-value=0.0006 Score=71.34 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g~--~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.++ .|++|+.++.|.+|..++ +++.+|. . +|+ .+.|+.||+|++...
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN-GRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecC-CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 468888888776 689999999999998876 8888887 3 343 678999999998765
No 149
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.68 E-value=0.00028 Score=66.17 Aligned_cols=33 Identities=52% Similarity=0.664 Sum_probs=29.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC--CCCcce
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH--VLGGAA 33 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~--~~GG~~ 33 (523)
|||++||.||..||.+|++|+|+|+.. .+||-+
T Consensus 12 gaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 12 GAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred CccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 899999999999999999999999853 466654
No 150
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.68 E-value=0.00021 Score=69.38 Aligned_cols=68 Identities=29% Similarity=0.351 Sum_probs=45.2
Q ss_pred ecCCCHHHHHHHHHHHHHHC-CcEEEeCceeeEEEEC--CCCCeEEEE-e--CCe----EEEcCEEEEcCChHHHHHhhC
Q psy893 224 YPEGGMGAVSQALARSAQAS-GAQLFTSQTVTEITLD--SDKRASGVV-T--NGL----EIKAKYVLSNTTAKCTLLDLI 293 (523)
Q Consensus 224 ~~~gG~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~--~~~~~~~v~-~--~g~----~~~ad~vI~a~~~~~~~~~ll 293 (523)
++.|--......+...+.++ |.+|++++.|++|..+ + +++++|+ . ++. .+.++.||+++++..+- +||
T Consensus 186 ~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~-~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp-~LL 263 (296)
T PF00732_consen 186 CPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG-GRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTP-RLL 263 (296)
T ss_dssp ECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS-TEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHH-HHH
T ss_pred ccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc-cceeeeeeeecCCcceeeeccceeEEeccCCCCCh-hhh
Confidence 33443333444444333344 8999999999999774 5 8888988 2 333 46789999999998864 554
No 151
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0026 Score=60.83 Aligned_cols=61 Identities=31% Similarity=0.468 Sum_probs=49.1
Q ss_pred eeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCC
Q psy893 222 WAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTT 284 (523)
Q Consensus 222 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~ 284 (523)
+-||+-|.+.|++.+++...-.|+++.+|+++.+|...+ . |.+|..++.+..|.+||+.-.
T Consensus 221 yLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk-~-v~~v~~~~~~~ka~KiI~~~~ 281 (434)
T COG5044 221 YLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETK-D-VETVDKGSLTQKAGKIISSPT 281 (434)
T ss_pred ceeeccCchhhhHHHHHhhhccCceeecCcchhhhcccc-c-eeeeecCcceeecCcccCCcc
Confidence 348888899999999999988899999999999998865 3 334555556788999887543
No 152
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.53 E-value=7.6e-05 Score=68.03 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~ 286 (523)
.+.+-|.+.+++.+.+++++++|++|..++ ++ +.|+ .++++++||+||+|++..
T Consensus 83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~-~~-w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 83 EVLDYLQEYAERFGLEIRFNTRVESVRRDG-DG-WTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHTTGGEETS--EEEEEEET-TT-EEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHhhcCcccccCCEEEEEEEec-cE-EEEEEEecceeeeeeEEEeeecc
Confidence 344556666677788899999999999987 66 5677 777789999999999853
No 153
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.48 E-value=8.8e-05 Score=72.97 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=34.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTE 36 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 36 (523)
|||++||+||..||+.|++|.++||++.+||+....
T Consensus 131 GGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 131 GGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred cCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 899999999999999999999999999999997654
No 154
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.46 E-value=0.0051 Score=65.42 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCC--CCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSD--KRASGVV----TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~--~~~~~v~----~~g~--~~~ad~vI~a~~~~~ 287 (523)
.+...+...+.+.+++|+.++.|+++..+++ |+++||. .+|+ .+.|+.||+|++.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 4455566666677789999999999998642 5788886 2454 578999999999874
No 155
>PLN02697 lycopene epsilon cyclase
Probab=97.46 E-value=0.0012 Score=68.81 Aligned_cols=56 Identities=23% Similarity=0.213 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+.+.|+++ ++++|++|..++ +.+..+. .+|.++.|+.||.|.+++.
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEAS-DGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 467788888888889998 788999998876 5554445 6788899999999999887
No 156
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.45 E-value=0.0039 Score=65.76 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHC-CcEEEeCceeeEEEECC-----CCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDS-----DKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~-----~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
..+...|.+.+.+. |++|+.++.|.++..++ ++++++|. . +|+ .+.|+.||+|++...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 46778888888765 89999999999998753 26788887 2 354 578999999998764
No 157
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.43 E-value=0.00035 Score=66.56 Aligned_cols=47 Identities=26% Similarity=0.383 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHHc----CCcEEEEccCCCCCcceeeec-ccCCceeccc
Q psy893 1 EAGHNGLVSAAYLARA----GLSVAVLERRHVLGGAAVTEE-IIPGFQFSRA 47 (523)
Q Consensus 1 GaG~~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~-~~~G~~~d~g 47 (523)
|+|++||++|..|-|. |.++.|+|--+..||...... ..+||....|
T Consensus 29 G~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGG 80 (587)
T COG4716 29 GGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGG 80 (587)
T ss_pred ccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCc
Confidence 8999999999999875 679999999999999876543 3567776555
No 158
>KOG2415|consensus
Probab=97.42 E-value=0.00061 Score=65.89 Aligned_cols=58 Identities=21% Similarity=0.440 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC------C---------eEEEcCEEEEcCChH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN------G---------LEIKAKYVLSNTTAK 286 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~------g---------~~~~ad~vI~a~~~~ 286 (523)
...++..|.+.+++.|++|.-+..+.++..++||.|.||. .| | -++.|+..|+|-+.+
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecccc
Confidence 5689999999999999999999999999998878888886 22 2 146788888876655
No 159
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.37 E-value=0.00015 Score=80.70 Aligned_cols=35 Identities=40% Similarity=0.566 Sum_probs=33.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||+.|+++||+|+|+|+++.+||.++.
T Consensus 313 GsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 313 GSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc
Confidence 89999999999999999999999999999999753
No 160
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.34 E-value=0.00018 Score=73.98 Aligned_cols=35 Identities=46% Similarity=0.610 Sum_probs=33.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||..|+++|++|+|+||++.+||....
T Consensus 17 GAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 17 GAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 89999999999999999999999999999998653
No 161
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.30 E-value=0.0026 Score=67.23 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=40.3
Q ss_pred HHHHHHHH-HCCcEEEeCceeeEEEECCCCCeEEEE-e-CCe---EEEcCEEEEcCChHHH
Q psy893 234 QALARSAQ-ASGAQLFTSQTVTEITLDSDKRASGVV-T-NGL---EIKAKYVLSNTTAKCT 288 (523)
Q Consensus 234 ~~l~~~~~-~~G~~i~~~~~V~~I~~~~~~~~~~v~-~-~g~---~~~ad~vI~a~~~~~~ 288 (523)
..+...+. ..|.+|++++.|++|..++ +++++|+ . +++ .+.++.||+++++..+
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~S 256 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKKGGRKEHTEANKEVILSAGAINS 256 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCC
Confidence 33333333 4569999999999999987 8999998 3 332 2478899999998654
No 162
>PRK09897 hypothetical protein; Provisional
Probab=97.28 E-value=0.0046 Score=64.45 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHCC--cEEEeCceeeEEEECCCCCeEEEE-eC-CeEEEcCEEEEcCCh
Q psy893 230 GAVSQALARSAQASG--AQLFTSQTVTEITLDSDKRASGVV-TN-GLEIKAKYVLSNTTA 285 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G--~~i~~~~~V~~I~~~~~~~~~~v~-~~-g~~~~ad~vI~a~~~ 285 (523)
+...+.+.+.+.+.| ++++.+++|+.|..++ +++ .|+ .+ |..+.||+||+|++.
T Consensus 107 ~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~-~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 107 RDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGV-MLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEE-EEEECCCCeEEEcCEEEECCCC
Confidence 455566777777777 7888999999998876 554 355 34 467899999999985
No 163
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.24 E-value=0.0039 Score=64.17 Aligned_cols=57 Identities=25% Similarity=0.461 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+++.|++++.++ |+.|..++++.++.|+ .+|++++||.||=|++...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 3677788899999999998885 8888777657778888 7899999999999988654
No 164
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.22 E-value=0.0039 Score=54.08 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHCCcEEE-eCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893 231 AVSQALARSAQASGAQLF-TSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA 285 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~-~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~ 285 (523)
...+.+.+.+ ..|++|. .+.+|+.|...+ ++. .|. .+|..+.||+||+|++.
T Consensus 102 ~~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~-~~~-~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 102 DRFDRLLARL-PAGITVRHVRAEVVDIRRDD-DGY-RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHHHHhh-cCCcEEEEEeeEEEEEEEcC-CcE-EEEECCCCEEEeCEEEECCCC
Confidence 3344444444 4465663 567999999987 553 466 88889999999999874
No 165
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.20 E-value=0.007 Score=67.89 Aligned_cols=57 Identities=21% Similarity=0.190 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHC----CcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQAS----GAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~----G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+.+. ++++..+..+.++..++ |+++||. .+|+ .+.|+.||+|++-..
T Consensus 139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 205 (897)
T PRK13800 139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG-GRAVGAAALNTRTGEFVTVGAKAVILATGPCG 205 (897)
T ss_pred hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC-CEEEEEEEEecCCCcEEEEECCEEEECCCccc
Confidence 45666777766654 56777777777888776 8888876 2464 478999999998754
No 166
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.19 E-value=0.002 Score=64.04 Aligned_cols=64 Identities=30% Similarity=0.446 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE----eCC--eEEEcCEEEEcCChHHHHHhhCCC
Q psy893 229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV----TNG--LEIKAKYVLSNTTAKCTLLDLIPK 295 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~----~~g--~~~~ad~vI~a~~~~~~~~~ll~~ 295 (523)
.+.|.+.|.+.+.+. |++++++++|+.|...+|+.. .|. ..| .+++|+.|++.++...+ .|+..
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL--~LLqk 250 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGAL--PLLQK 250 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhH--HHHHH
Confidence 578999999999998 899999999999999885543 343 223 47899999999998874 35543
No 167
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.19 E-value=0.00031 Score=77.75 Aligned_cols=35 Identities=40% Similarity=0.634 Sum_probs=33.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||++|++.|++|+|+|+.+.+||.++.
T Consensus 544 GGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 544 GAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 89999999999999999999999999999999854
No 168
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.15 E-value=0.00033 Score=71.72 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---CeEEEcCEEEEcCChHHHHHhhCC
Q psy893 239 SAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---GLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 239 ~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+++.|++|++++.|.++..++ +++++|+ .+ ..++.|+.||=|++-..+ ..+..
T Consensus 99 ~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l-~~~aG 156 (428)
T PF12831_consen 99 MLAEAGVEVLLGTRVVDVIRDG-GRITGVIVETKSGRKEIRAKVFIDATGDGDL-AALAG 156 (428)
T ss_dssp ------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccccccccc-ccccc
Confidence 3357799999999999999998 8999988 33 347899999988886553 34443
No 169
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.14 E-value=0.0058 Score=63.98 Aligned_cols=56 Identities=25% Similarity=0.414 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
.+...|.+.+++. |++++ ...|+++..++++++.+|. .+|..+.|+.||+|++.+.
T Consensus 97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 5667777878787 56775 4578888766227888998 7888899999999999884
No 170
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.11 E-value=0.0011 Score=65.71 Aligned_cols=53 Identities=26% Similarity=0.333 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe-EEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL-EIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~-~~~ad~vI~a~~~~~ 287 (523)
..++.+...+.++++|++|++++.|++|..+. |+ .+|+ ++.++.||.|++...
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEccCCeeEecCEEEEcCCCcC
Confidence 45788888899999999999999999998653 55 5666 599999999998764
No 171
>KOG1399|consensus
Probab=97.07 E-value=0.00042 Score=70.18 Aligned_cols=35 Identities=40% Similarity=0.498 Sum_probs=32.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||.+||+||..|.+.|++|+|+||.+.+||.-..
T Consensus 13 GAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 13 GAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY 47 (448)
T ss_pred CcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence 89999999999999999999999999999997543
No 172
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.06 E-value=0.00044 Score=71.72 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|++++++++|++|..++ +.+ .++ .+|+++++|.||++++...
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~-~~~-~v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGD-DGV-IVHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeC-CeE-EEEECCCCEEEeCEEEEeecCCc
Confidence 4678889999999999999999999998765 443 355 6777899999999988654
No 173
>PRK12831 putative oxidoreductase; Provisional
Probab=97.06 E-value=0.00053 Score=70.85 Aligned_cols=34 Identities=38% Similarity=0.579 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++||+||++|++.|++|+|+|+++.+||.+.
T Consensus 147 G~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 147 GSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 8999999999999999999999999999999875
No 174
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.05 E-value=0.0027 Score=62.84 Aligned_cols=62 Identities=21% Similarity=0.398 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
...++..|++.+.++|++++.+++|++|..++ +++++|. .+| +++||+||+|++++. ..|.+
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~~~g-~~~a~~vV~a~G~~~--~~l~~ 198 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVTPSG-DVQADQVVLAAGAWA--GELLP 198 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEcCCC-EEECCEEEEcCChhh--hhccc
Confidence 47899999999999999999999999999877 7777777 556 799999999999997 34543
No 175
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.03 E-value=0.00051 Score=68.40 Aligned_cols=64 Identities=22% Similarity=0.285 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNGL--EIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~--~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
..+-+.|.+.+++.|++|+++++|+.+..++ ++++.+. .+|+ +++||.||-|-+.+...++.+.
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~-~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDD-DGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEET-TEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccccc-cccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 4678889999999999999999999999887 5554333 3453 6899999999998887777664
No 176
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.97 E-value=0.00067 Score=74.88 Aligned_cols=35 Identities=46% Similarity=0.665 Sum_probs=33.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||+.|+++|++|+|+|+.+.+||.++.
T Consensus 546 GgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 546 GAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 89999999999999999999999999999999864
No 177
>PLN02661 Putative thiazole synthesis
Probab=96.96 E-value=0.00068 Score=65.94 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=30.4
Q ss_pred CCChhHHHHHHHHHHc-CCcEEEEccCCCCCcce
Q psy893 1 EAGHNGLVSAAYLARA-GLSVAVLERRHVLGGAA 33 (523)
Q Consensus 1 GaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG~~ 33 (523)
|||++||+||+.|+++ |++|+|+||+..+||..
T Consensus 99 GaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 99 GAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 8999999999999986 89999999999998854
No 178
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.93 E-value=0.00067 Score=70.34 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CC--eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NG--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g--~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|++|++++.|++|..++ +.+ .++ . +| +++.+|.||++++...
T Consensus 215 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 215 TETAKTLQKALTKQGMKFKLGSKVTGATAGA-DGV-SLTLEPAAGGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEECcEEEEEEEcC-CeE-EEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence 4577888999999999999999999998764 333 232 2 23 4789999999988654
No 179
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.93 E-value=0.014 Score=61.29 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893 231 AVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 231 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~ 287 (523)
.+...|.+.+.+ .+.+|..+..|.++..++++++.+|. .+|+ .+.++.||+|++...
T Consensus 139 ~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 139 ELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 566677777766 56688999999999988634477776 3454 457889999987654
No 180
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.92 E-value=0.00088 Score=68.91 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.7
Q ss_pred CCChhHHHHHHHHHH--cCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLAR--AGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||..|++ .|++|+|+|+.+.+||.++.
T Consensus 33 GaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 33 GSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 899999999999997 79999999999999998864
No 181
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.91 E-value=0.00079 Score=69.43 Aligned_cols=56 Identities=27% Similarity=0.306 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|.+|..++ +.+ .|. .+|+++.+|.||++++...
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTD-DGL-KVTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeE-EEEEcCCcEeecCEEEEeeCCCc
Confidence 4677788888999999999999999998765 333 355 6788899999999987653
No 182
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.91 E-value=0.00078 Score=68.59 Aligned_cols=35 Identities=43% Similarity=0.560 Sum_probs=33.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||..|+++|++|+|+|+.+.+||++..
T Consensus 130 GaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 130 GAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 89999999999999999999999999999999864
No 183
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.87 E-value=0.00097 Score=72.17 Aligned_cols=35 Identities=40% Similarity=0.598 Sum_probs=33.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||..|++.|++|+|+|+.+.+||.+..
T Consensus 334 GaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 334 GAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 89999999999999999999999999999998753
No 184
>PRK06753 hypothetical protein; Provisional
Probab=96.86 E-value=0.00086 Score=67.47 Aligned_cols=60 Identities=10% Similarity=0.197 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.|.+.|.+.+. +.+|+++++|++|..++ +++ .|+ .+|+++++|.||-|-+.+...++.+.
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~~~~vigadG~~S~vR~~~~ 159 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENET-DKV-TIHFADGESEAFDLCIGADGIHSKVRQSVN 159 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecC-CcE-EEEECCCCEEecCEEEECCCcchHHHHHhC
Confidence 45555555543 35899999999998776 554 466 78888999999999998877777664
No 185
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.86 E-value=0.00091 Score=69.40 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC--eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g--~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|.+|..++ +++. +. .+| +++.+|.||++++...
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQVV-YENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence 4677888899999999999999999998776 5543 55 566 4799999999987654
No 186
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.84 E-value=0.00092 Score=75.23 Aligned_cols=35 Identities=40% Similarity=0.581 Sum_probs=33.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||..|+++|++|+|+|+.+.+||.++.
T Consensus 437 G~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 437 GSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 89999999999999999999999999999998753
No 187
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.81 E-value=0.0011 Score=67.22 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECC-CCCeEEEE---eC-----C--eEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDS-DKRASGVV---TN-----G--LEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~~~~v~---~~-----g--~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+.+.|++++.++ +..|.... .+..+.|+ .+ | .+++|+.||.|.+....+.+.+.
T Consensus 94 ~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g 167 (398)
T TIGR02028 94 VLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEID 167 (398)
T ss_pred HHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhC
Confidence 455667888888999998775 77775321 13333444 22 3 37899999999998876666554
No 188
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.81 E-value=0.001 Score=68.94 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC---eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG---LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g---~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|++++++++|++|..++ +.+ .+. .+| +++.+|.||++++...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTD-DGV-TVTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 4677888899999999999999999998765 443 354 555 6789999999988654
No 189
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.80 E-value=0.00099 Score=69.61 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=29.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++||+||..|.+.|++|+++||++.+||.=+
T Consensus 8 GaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 8 GAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 8999999999999999999999999999999743
No 190
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0012 Score=67.73 Aligned_cols=34 Identities=35% Similarity=0.591 Sum_probs=31.7
Q ss_pred CCChhHHHHHHHHHHcCCc-EEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLS-VAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~ 34 (523)
|||++||++|++|.++|.. ++||||++.+||.=+
T Consensus 15 GaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~ 49 (443)
T COG2072 15 GAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR 49 (443)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcch
Confidence 8999999999999999998 999999999998633
No 191
>PRK07236 hypothetical protein; Provisional
Probab=96.77 E-value=0.0011 Score=66.92 Aligned_cols=48 Identities=13% Similarity=0.208 Sum_probs=38.6
Q ss_pred CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893 244 GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI 293 (523)
Q Consensus 244 G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll 293 (523)
+++|+++++|++|+.++ +.+ .|+ .+|++++||.||.|-+.+...++.+
T Consensus 112 ~~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vIgADG~~S~vR~~l 160 (386)
T PRK07236 112 AERYHLGETLVGFEQDG-DRV-TARFADGRRETADLLVGADGGRSTVRAQL 160 (386)
T ss_pred CcEEEcCCEEEEEEecC-CeE-EEEECCCCEEEeCEEEECCCCCchHHHHh
Confidence 36799999999999876 554 366 8888999999999988776666654
No 192
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.77 E-value=0.0013 Score=63.89 Aligned_cols=32 Identities=41% Similarity=0.586 Sum_probs=29.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 33 (523)
|||++||+||..|++.|++|+|+|+++ +||.+
T Consensus 7 G~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~ 38 (300)
T TIGR01292 7 GAGPAGLTAAIYAARANLKTLIIEGME-PGGQL 38 (300)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEeccC-CCcce
Confidence 899999999999999999999999987 77754
No 193
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.77 E-value=0.0012 Score=68.06 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|++++++++|++|..++ +++ .+..+|+++.+|.||++++...
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~-~~v-~v~~~g~~i~~D~viva~G~~p 253 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDG-DQV-LVVTEDETYRFDALLYATGRKP 253 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecC-CEE-EEEECCeEEEcCEEEEeeCCCC
Confidence 4566777788889999999999999998755 433 2335677899999999987654
No 194
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.76 E-value=0.0012 Score=66.86 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.|.+.+.+.|++++ .+.|..|..++ +..+.|+ .+|++++|+.||.|.+.+.
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 4677788888888899885 66898888774 3444566 6777899999999999876
No 195
>PRK06116 glutathione reductase; Validated
Probab=96.76 E-value=0.00098 Score=68.90 Aligned_cols=57 Identities=9% Similarity=0.180 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|++++++++|.+|..++ +....|+ .+|+++.+|.||++++...
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-~g~~~v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNA-DGSLTLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcC-CceEEEEEcCCcEEEeCEEEEeeCCCc
Confidence 4677888999999999999999999998765 3323456 6788899999999987543
No 196
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.75 E-value=0.0014 Score=67.53 Aligned_cols=34 Identities=47% Similarity=0.612 Sum_probs=32.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++||+||..|++.|++|+|+|+.+.+||.+.
T Consensus 140 G~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 140 GAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 8999999999999999999999999999999764
No 197
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.74 E-value=0.0012 Score=68.01 Aligned_cols=57 Identities=7% Similarity=0.056 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC-eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG-LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g-~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|++|..++ +....|+ .+| +++.+|.||++++...
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~-~~~~~v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTV-EGKLVIHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeC-CceEEEEECCCcEEEEcCEEEEeeCCCc
Confidence 4677888899999999999999999998754 3323455 667 5799999999988654
No 198
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.74 E-value=0.036 Score=54.93 Aligned_cols=118 Identities=22% Similarity=0.163 Sum_probs=70.8
Q ss_pred HHHHHHhhcHHHHHHhhcCChHHH-HHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCCCHHHHHHHHHH
Q psy893 160 DVYSLLTCSAFSILNDWFESEPLK-ATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALAR 238 (523)
Q Consensus 160 ~~~~~~~~s~~~~l~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~ 238 (523)
++.+....+..+++.+..-++.+. +++..... ..|....... .++.+.+.+....|.| -++||...+++.|.+
T Consensus 63 ~~~~~t~~t~~e~L~~~gi~~~fi~Elv~a~tR-vNYgQ~~~i~----a~~G~vSla~a~~gl~-sV~GGN~qI~~~ll~ 136 (368)
T PF07156_consen 63 DFLNLTKVTGEEYLKENGISERFINELVQAATR-VNYGQNVNIH----AFAGLVSLAGATGGLW-SVEGGNWQIFEGLLE 136 (368)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHhheE-eecccccchh----hhhhheeeeeccCCce-EecCCHHHHHHHHHH
Confidence 455566778888887765455444 45543332 2222212221 1222223233345777 799999999999998
Q ss_pred HHHHCCcEEEeCceeeEE-EECCCCC-eEEEE-e--CCe-EEEcCEEEEcCChHH
Q psy893 239 SAQASGAQLFTSQTVTEI-TLDSDKR-ASGVV-T--NGL-EIKAKYVLSNTTAKC 287 (523)
Q Consensus 239 ~~~~~G~~i~~~~~V~~I-~~~~~~~-~~~v~-~--~g~-~~~ad~vI~a~~~~~ 287 (523)
..|.++ ++++|++| ...+++. ...|. . .+. .-.+|.||+|+|...
T Consensus 137 ---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 137 ---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred ---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 567889 99999999 4433232 23344 2 222 335799999999864
No 199
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.72 E-value=0.0014 Score=68.09 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC--C--eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN--G--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~--g--~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++. +++++++.|++|..++ +.+ .++ .+ | +++.+|.||++++...
T Consensus 215 ~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~-~~~-~v~~~~~~~~~~~i~~D~vi~a~G~~p 274 (471)
T PRK06467 215 KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE-DGI-YVTMEGKKAPAEPQRYDAVLVAVGRVP 274 (471)
T ss_pred HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC-CEE-EEEEEeCCCcceEEEeCEEEEeecccc
Confidence 46677888888888 9999999999998765 443 344 33 2 3689999999988764
No 200
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.71 E-value=0.0014 Score=67.51 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|++|..++ +.+ .+. .++ ++.+|.||++++...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~v-~v~~~~g-~i~~D~vl~a~G~~p 254 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE-NQV-QVHSEHA-QLAVDALLIASGRQP 254 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEE-EEEEcCC-eEEeCEEEEeecCCc
Confidence 4677888999999999999999999998765 443 344 444 689999999987654
No 201
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.71 E-value=0.0017 Score=66.04 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=31.9
Q ss_pred CCChhHHHHHHHHH-HcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLA-RAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La-~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||.||.+|+ +.|++|+|+||.+.+||..+.
T Consensus 46 GaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 46 GAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 89999999999764 679999999999999999875
No 202
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.70 E-value=0.0015 Score=70.37 Aligned_cols=35 Identities=43% Similarity=0.601 Sum_probs=33.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||+.|++.|++|+|+|+++.+||.+..
T Consensus 317 G~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~ 351 (639)
T PRK12809 317 GAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF 351 (639)
T ss_pred CcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence 89999999999999999999999999999998753
No 203
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.69 E-value=0.0015 Score=68.03 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEEC-CCCCeEEEE-eCC--eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLD-SDKRASGVV-TNG--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~~~~~v~-~~g--~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|++|..+ + +++..+. .+| +++.+|.||++++...
T Consensus 221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 467788888999999999999999999862 3 4444444 566 3689999999988764
No 204
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.68 E-value=0.0016 Score=71.77 Aligned_cols=34 Identities=38% Similarity=0.545 Sum_probs=32.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++||+||..|+++|++|+|+|+.+.+||...
T Consensus 438 GaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 438 GSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 8999999999999999999999999999999875
No 205
>PRK09126 hypothetical protein; Provisional
Probab=96.68 E-value=0.0015 Score=66.32 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=46.6
Q ss_pred HHHHHHHHHHH-HCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQ-ASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~-~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+.+.|.+.+. ..|++|+.+++|++|..++ +.+ .|+ .+|++++||.||.|.+.+....+.+.
T Consensus 111 ~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (392)
T PRK09126 111 LIRRAAYEAVSQQDGIELLTGTRVTAVRTDD-DGA-QVTLANGRRLTARLLVAADSRFSATRRQLG 174 (392)
T ss_pred HHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC-CeE-EEEEcCCCEEEeCEEEEeCCCCchhhHhcC
Confidence 34455555554 4589999999999998876 544 466 78889999999999998765566553
No 206
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.66 E-value=0.0015 Score=66.38 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE----eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV----TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
..|.+.|.+.+.+. |++++++++|++|..++ +++. |+ .++++++||.||-|-+.+...++.++
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~-~~v~-v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTG-NSIT-ATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEecCC-CceE-EEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 36777788777664 79999999999998876 5543 33 23357899999999998887777764
No 207
>PRK07538 hypothetical protein; Provisional
Probab=96.66 E-value=0.0015 Score=66.63 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHH-CC-cEEEeCceeeEEEECCCCCeEEEE--eCC--eEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQA-SG-AQLFTSQTVTEITLDSDKRASGVV--TNG--LEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~-~G-~~i~~~~~V~~I~~~~~~~~~~v~--~~g--~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.|-+.|.+.+.+ .| .+|+++++|++|..++++.++.+. .+| ++++||.||-|-+.+...++.+.
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~ 172 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLY 172 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhc
Confidence 566667777655 46 479999999999887623222232 122 47899999999998877777664
No 208
>KOG2853|consensus
Probab=96.65 E-value=0.044 Score=52.08 Aligned_cols=37 Identities=32% Similarity=0.510 Sum_probs=29.8
Q ss_pred CCChhHHHHHHHHHHc----CCcEEEEccCCC---------CCcceeeec
Q psy893 1 EAGHNGLVSAAYLARA----GLSVAVLERRHV---------LGGAAVTEE 37 (523)
Q Consensus 1 GaG~~GL~aA~~La~~----G~~V~vlE~~~~---------~GG~~~s~~ 37 (523)
|||..|+++|+.|.++ |.+|+|+|+++. +||-|+.|.
T Consensus 93 GGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFS 142 (509)
T KOG2853|consen 93 GGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS 142 (509)
T ss_pred CCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecc
Confidence 8999999999999753 799999999874 556555544
No 209
>PRK08013 oxidoreductase; Provisional
Probab=96.62 E-value=0.0015 Score=66.30 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.|-+.|.+.+.+. |++++++++|++|+.++ +.+ .|+ .+|++++||.||-|-+.+...++.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGE-NEA-FLTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-CeE-EEEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 5667788877775 79999999999998876 444 466 78889999999999998877777764
No 210
>KOG2614|consensus
Probab=96.62 E-value=0.0016 Score=63.44 Aligned_cols=29 Identities=41% Similarity=0.515 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|||++||++|..|+++|++|+|||+...+
T Consensus 9 GgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 9 GGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 89999999999999999999999997655
No 211
>PRK05868 hypothetical protein; Validated
Probab=96.61 E-value=0.0019 Score=64.92 Aligned_cols=61 Identities=8% Similarity=0.134 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.|.+.|.+.+ ..|++++++++|++|..++ +++ .|+ .+|++++||.||-|-+.+...++++.
T Consensus 106 ~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~-~~v-~v~~~dg~~~~adlvIgADG~~S~vR~~~~ 167 (372)
T PRK05868 106 DLVELLYGAT-QPSVEYLFDDSISTLQDDG-DSV-RVTFERAAAREFDLVIGADGLHSNVRRLVF 167 (372)
T ss_pred HHHHHHHHhc-cCCcEEEeCCEEEEEEecC-CeE-EEEECCCCeEEeCEEEECCCCCchHHHHhc
Confidence 3444444433 4589999999999998765 544 466 88889999999999998877777764
No 212
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.61 E-value=0.0018 Score=66.26 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI 293 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll 293 (523)
.|.+.|.+.+. .+.++++++|++|..++ +++ .|+ .+|+++++|.||.|-+.+...++.+
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQA-EEV-QVLFTDGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecC-CcE-EEEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence 56667776653 35689999999999876 554 466 7888899999999999988776665
No 213
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.60 E-value=0.0017 Score=65.59 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.|-..|.+.+.+. |++++.+++|++|+.++ +.+ .|+ .+|++++||.||.|-+.+...++.+.
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~-~~~-~v~~~~g~~~~~~lvIgADG~~S~vR~~~g 174 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSA-EGN-RVTLESGAEIEAKWVIGADGANSQVRQLAG 174 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcC-CeE-EEEECCCCEEEeeEEEEecCCCchhHHhcC
Confidence 3455666666554 69999999999999876 544 366 78889999999999998877666654
No 214
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.59 E-value=0.002 Score=65.22 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC------C--eEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN------G--LEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~------g--~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+.+.|++++.+ .|++|..++ +.+ .|+ .+ | .+++||.||.|.+....+.+.+.
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg 162 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDR-DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELG 162 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcC-CeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcC
Confidence 55667788888889999765 699998776 544 355 42 2 37899999999998766666554
No 215
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.56 E-value=0.0023 Score=66.49 Aligned_cols=34 Identities=44% Similarity=0.619 Sum_probs=32.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++||+||..|++.|++|+|+|+.+.+||...
T Consensus 150 GaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 150 GSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 8999999999999999999999999999999764
No 216
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.56 E-value=0.0022 Score=69.19 Aligned_cols=34 Identities=35% Similarity=0.567 Sum_probs=32.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++||+||..|++.|++|+|+|+++.+||...
T Consensus 200 GaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 200 GAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 8999999999999999999999999999999875
No 217
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.55 E-value=0.0021 Score=66.69 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|++++++++|++|..++ +. ..++ . +++++.+|.||++++...
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~-~~v~~~~~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRG-GG-KIITVEKPGGQGEVEADELLVATGRRP 266 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC-CE-EEEEEEeCCCceEEEeCEEEEeECCCc
Confidence 4577788888999999999999999998765 43 2344 2 235799999999987554
No 218
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.53 E-value=0.002 Score=66.21 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCC-CCeEEEE-eC-------C--eEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSD-KRASGVV-TN-------G--LEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~-~~~~~v~-~~-------g--~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+.+.|++++.+ .|++|....+ +..+.|+ .+ | .+++||.||-|-+....+.+.+.
T Consensus 133 ~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg 206 (450)
T PLN00093 133 VLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDID 206 (450)
T ss_pred HHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhC
Confidence 45567888888899999765 5878875321 2223344 21 3 37899999999998776666654
No 219
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.52 E-value=0.0023 Score=66.46 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CC--eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NG--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g--~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|++|+++++|++|..++ +.+ .++ . +| +++.+|.||++++...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNG-SKV-TVTVSKKDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CeE-EEEEEecCCCeEEEEeCEEEECcCccc
Confidence 4677889999999999999999999998755 433 343 3 56 3789999999988654
No 220
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.52 E-value=0.0022 Score=66.58 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC--eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g--~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++. ++|+++++|.+|..++ +..+.++ .++ +++.+|.||++++...
T Consensus 210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~-~~~v~~~~~~~~~~~i~~D~vi~a~G~~p 268 (460)
T PRK06292 210 PEVSKQAQKILSKE-FKIKLGAKVTSVEKSG-DEKVEELEKGGKTETIEADYVLVATGRRP 268 (460)
T ss_pred HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcC-CceEEEEEcCCceEEEEeCEEEEccCCcc
Confidence 45777888888888 9999999999998765 3112232 233 4789999999987654
No 221
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.48 E-value=0.0027 Score=65.76 Aligned_cols=35 Identities=43% Similarity=0.633 Sum_probs=33.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||..|++.|++|+|+|+.+.+||..+.
T Consensus 148 G~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~ 182 (467)
T TIGR01318 148 GAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF 182 (467)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence 89999999999999999999999999999998753
No 222
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.47 E-value=0.0023 Score=64.76 Aligned_cols=63 Identities=10% Similarity=0.103 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
..+.+.|.+.+.+.++..+++++|++|..++ +.+. |+ .+|++++||.||.|.+.+..+.+.+.
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~-~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPRE-DEVT-VTLADGTTLSARLVVGADGRNSPVREAAG 174 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEcC-CeEE-EEECCCCEEEEeEEEEecCCCchhHHhcC
Confidence 3677788888877765458999999998876 5553 66 77888999999999998766666654
No 223
>PRK14694 putative mercuric reductase; Provisional
Probab=96.46 E-value=0.0025 Score=66.16 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|.+|..++ +. ..+..++.++.+|.||++++...
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-~~-~~v~~~~~~i~~D~vi~a~G~~p 273 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG-RE-FILETNAGTLRAEQLLVATGRTP 273 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CE-EEEEECCCEEEeCEEEEccCCCC
Confidence 5678889999999999999999999998765 43 23443444799999999987654
No 224
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.46 E-value=0.0022 Score=64.60 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 230 GAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
..|-+.|.+.+.+.+ ++++++++|++|..++ +.+ .|. .++ +++||.||.|-+.+...++.+.
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v-~v~~~~~-~~~adlvIgADG~~S~vR~~l~ 167 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHN-DYS-IIKFDDK-QIKCNLLIICDGANSKVRSHYF 167 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC-CeE-EEEEcCC-EEeeCEEEEeCCCCchhHHhcC
Confidence 477788888888875 8999999999998876 554 366 665 8999999999998877777664
No 225
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.44 E-value=0.0029 Score=65.50 Aligned_cols=34 Identities=41% Similarity=0.581 Sum_probs=32.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++||+||..|++.|++|+|+|+++.+||...
T Consensus 147 GgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 147 GAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 8999999999999999999999999999998764
No 226
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.44 E-value=0.0029 Score=67.08 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||..|+++|++|+|+|++ .+||.+..
T Consensus 11 GgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 11 GGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 89999999999999999999999996 68887653
No 227
>PRK14727 putative mercuric reductase; Provisional
Probab=96.44 E-value=0.0024 Score=66.47 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~ 287 (523)
...+.+.+.+.+++.|++++++++|++|..++ +.+ .+..++.++.+|.||++++...
T Consensus 227 d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-~~~-~v~~~~g~i~aD~VlvA~G~~p 283 (479)
T PRK14727 227 DPLLGETLTACFEKEGIEVLNNTQASLVEHDD-NGF-VLTTGHGELRAEKLLISTGRHA 283 (479)
T ss_pred hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC-CEE-EEEEcCCeEEeCEEEEccCCCC
Confidence 34677888899999999999999999998765 433 3443333689999999998765
No 228
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.37 E-value=0.012 Score=59.11 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC--eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g--~~~~ad~vI~a~~~~~ 287 (523)
.++.++|.+.++++|++++.+++|.+|..++ +++++|. .++ ..++||+||+|++.|.
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t~~g~~~~l~AD~vVLAaGaw~ 322 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHTRNHRDIPLRADHFVLASGSFF 322 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEecCCccceEECCEEEEccCCCc
Confidence 4889999999999999999999999999888 8888777 554 4799999999999983
No 229
>PRK13748 putative mercuric reductase; Provisional
Probab=96.36 E-value=0.0027 Score=67.64 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~ 287 (523)
...+.+.+.+.+++.|++|++++.|++|..++ +.+ .+..++.++.+|.||++++...
T Consensus 309 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-~~~-~v~~~~~~i~~D~vi~a~G~~p 365 (561)
T PRK13748 309 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD-GEF-VLTTGHGELRADKLLVATGRAP 365 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEE-EEEecCCeEEeCEEEEccCCCc
Confidence 34677888999999999999999999998765 543 3443333799999999988654
No 230
>PRK06370 mercuric reductase; Validated
Probab=96.35 E-value=0.0033 Score=65.25 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCe-EEEE-e-CCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRA-SGVV-T-NGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~-~~v~-~-~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|++++++++|.+|..++ +.+ +.+. . ++.++.+|.||++++...
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~i~~D~Vi~A~G~~p 271 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDG-DGIAVGLDCNGGAPEITGSHILVAVGRVP 271 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEEEEEEEeCCCceEEEeCEEEECcCCCc
Confidence 3567788888999999999999999998765 432 2222 2 345799999999988654
No 231
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.33 E-value=0.0031 Score=69.00 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=27.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG 31 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG 31 (523)
|||++||+||++|++.||+|+|+|+.+..|+
T Consensus 390 GaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 390 GLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 8999999999999999999999999765433
No 232
>KOG0399|consensus
Probab=96.33 E-value=0.0032 Score=68.12 Aligned_cols=35 Identities=37% Similarity=0.562 Sum_probs=33.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|+|.+||+||-.|-++||-|+|+||.+++||.+..
T Consensus 1792 gsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1792 GSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred ccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 89999999999999999999999999999999863
No 233
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.30 E-value=0.0036 Score=62.68 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=29.2
Q ss_pred CCChhHHHHHHHHHHc--CCcEEEEccCCCCCcc
Q psy893 1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGGA 32 (523)
Q Consensus 1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~ 32 (523)
|||++||++|+.|+++ |++|+|+|+.+..||.
T Consensus 6 GaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 6 GGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 8999999999999987 9999999998877653
No 234
>PTZ00058 glutathione reductase; Provisional
Probab=96.27 E-value=0.0036 Score=65.94 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC-CeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN-GLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~-g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|.+|..++++++. +. .+ ++++.+|.||++++...
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~P 336 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSP 336 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCC
Confidence 467788889999999999999999999865423333 33 33 45799999999988553
No 235
>KOG2665|consensus
Probab=96.26 E-value=0.039 Score=51.87 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCC---CeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDK---RASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~---~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
++.+...+.+..+..|+++.+|-+|..|...+++ --+.|. ..+++++...||.+++...
T Consensus 195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 4678888999999999999999999999876632 122344 5577889999888877553
No 236
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.24 E-value=0.0039 Score=64.82 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC--C--eEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN--G--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~--g--~~~~ad~vI~a~~~~~ 287 (523)
...+.+.+.+.+++.|++|++++.|++|..++ +.+ .+. .+ | +++.+|.||++++...
T Consensus 223 d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p 284 (475)
T PRK06327 223 DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG-KGV-SVAYTDADGEAQTLEVDKLIVSIGRVP 284 (475)
T ss_pred CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC-CEE-EEEEEeCCCceeEEEcCEEEEccCCcc
Confidence 35678888899999999999999999998765 444 344 43 3 4689999999987654
No 237
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.24 E-value=0.0043 Score=64.52 Aligned_cols=35 Identities=40% Similarity=0.574 Sum_probs=32.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||..|+++|++|+|+|+.+++||.+..
T Consensus 150 GaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~ 184 (485)
T TIGR01317 150 GSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY 184 (485)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec
Confidence 89999999999999999999999999999998753
No 238
>PRK06126 hypothetical protein; Provisional
Probab=96.23 E-value=0.0039 Score=66.14 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE---eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV---TNGL--EIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~--~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+++. |++|+++++|++|..++ ++++.+. .+|+ ++++|.||.|.+.+...++.+.
T Consensus 127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDA-DGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred HHHHHHHHHHHhCCCceEEeccEEEEEEECC-CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 4566777777665 79999999999999887 5554222 2353 6899999999999887777764
No 239
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.22 E-value=0.0045 Score=65.83 Aligned_cols=34 Identities=35% Similarity=0.480 Sum_probs=32.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++||+||..|++.|++|+|+|+.+.+||..+
T Consensus 144 GaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 144 GGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 8999999999999999999999999999999874
No 240
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.21 E-value=0.0042 Score=64.94 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|.+|...+ +.+ .++ .+|+++.+|.||++++...
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DKI-KVLFSDGTTELFDTVLYATGRKP 278 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-CeE-EEEECCCCEEEcCEEEEeeCCCC
Confidence 3567888899999999999999999998765 433 455 6788899999999988654
No 241
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.20 E-value=0.0036 Score=66.62 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI 293 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll 293 (523)
.|.+.|.+.+.. ..++++++|++|..++ ++++ |+ .+|+++++|.||.|-+.+...++.+
T Consensus 195 ~L~~~L~~alg~--~~i~~g~~V~~I~~~~-d~Vt-V~~~dG~ti~aDlVVGADG~~S~vR~~l 254 (668)
T PLN02927 195 TLQQILARAVGE--DVIRNESNVVDFEDSG-DKVT-VVLENGQRYEGDLLVGADGIWSKVRNNL 254 (668)
T ss_pred HHHHHHHhhCCC--CEEEcCCEEEEEEEeC-CEEE-EEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence 566666554321 2478899999999876 6554 66 7888899999999999887665554
No 242
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.19 E-value=0.0044 Score=62.39 Aligned_cols=31 Identities=32% Similarity=0.264 Sum_probs=28.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG 31 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG 31 (523)
|||++|+.||+.||+.|++|+|+|+++..+-
T Consensus 7 GgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 7 GGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 8999999999999999999999999887653
No 243
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.16 E-value=0.0048 Score=61.73 Aligned_cols=30 Identities=37% Similarity=0.390 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG 30 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G 30 (523)
|||++|+.||+.||++|++|+|+|+.+.+.
T Consensus 9 GGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 9 GAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 899999999999999999999999987643
No 244
>PRK10262 thioredoxin reductase; Provisional
Probab=96.16 E-value=0.0047 Score=60.69 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=30.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||..|+++|++|+|+|+. ..||.+..
T Consensus 13 GgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 13 GSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 89999999999999999999999965 57887654
No 245
>PLN02985 squalene monooxygenase
Probab=96.13 E-value=0.0043 Score=64.89 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE---eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV---TNGL--EIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~--~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+.+.|.+.+.+. |++++.+ .|+++..++ +.+.+|+ .+|+ ++.||.||.|-+.+..+++.+.
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~ 215 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLN 215 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhc
Confidence 6777888888776 5888865 577776665 6666676 3564 3568999999998877777664
No 246
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.09 E-value=0.0042 Score=63.00 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+.+ .|++++.+++|++|..++ +++ .|+ .+|.++++|.||.|.+.+..+.+.+.
T Consensus 113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~ 176 (395)
T PRK05732 113 DVGQRLFALLDKAPGVTLHCPARVANVERTQ-GSV-RVTLDDGETLTGRLLVAADGSHSALREALG 176 (395)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC-CeE-EEEECCCCEEEeCEEEEecCCChhhHHhhC
Confidence 344566666655 479999999999998766 554 366 67778999999999998865555553
No 247
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.09 E-value=0.0054 Score=69.44 Aligned_cols=54 Identities=24% Similarity=0.260 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e----CCeEEEcCEEEEcCChHH
Q psy893 232 VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T----NGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 232 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~----~g~~~~ad~vI~a~~~~~ 287 (523)
+...+.+.++++|++|++++.|.+|..+ +++.+|+ . +++++.+|.|+++.+...
T Consensus 353 ~~~~l~~~L~~~GV~i~~~~~v~~i~g~--~~v~~V~l~~~~g~~~~i~~D~V~va~G~~P 411 (985)
T TIGR01372 353 VSPEARAEARELGIEVLTGHVVAATEGG--KRVSGVAVARNGGAGQRLEADALAVSGGWTP 411 (985)
T ss_pred hhHHHHHHHHHcCCEEEcCCeEEEEecC--CcEEEEEEEecCCceEEEECCEEEEcCCcCc
Confidence 4456778888999999999999999754 4455565 3 456789999999987543
No 248
>PRK11445 putative oxidoreductase; Provisional
Probab=96.04 E-value=0.0052 Score=61.23 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=41.1
Q ss_pred HHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893 235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 235 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.|.+. .+.|++++.++.|++|..++ +.+ .|+ .+|+ +++||.||.|.+.....++.+.
T Consensus 104 ~L~~~-~~~gv~v~~~~~v~~i~~~~-~~~-~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~ 164 (351)
T PRK11445 104 WLKSL-IPASVEVYHNSLCRKIWRED-DGY-HVIFRADGWEQHITARYLVGADGANSMVRRHLY 164 (351)
T ss_pred HHHHH-HhcCCEEEcCCEEEEEEEcC-CEE-EEEEecCCcEEEEEeCEEEECCCCCcHHhHHhc
Confidence 34443 35689999999999998876 443 344 4564 6899999999998766555553
No 249
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.03 E-value=0.0048 Score=63.49 Aligned_cols=65 Identities=8% Similarity=0.195 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCC---cEEEeCceeeEEEEC-----CCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893 230 GAVSQALARSAQASG---AQLFTSQTVTEITLD-----SDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G---~~i~~~~~V~~I~~~-----~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
..+-+.|.+.+.+.+ ++++++++|++|..+ +++..+.|+ .+|++++||.||-|-+.+...++.+.
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence 356677788887765 899999999999753 112224566 78889999999999998877777764
No 250
>PTZ00367 squalene epoxidase; Provisional
Probab=95.98 E-value=0.0054 Score=64.63 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|||++|+++|..|+++|++|+|+||+.
T Consensus 40 GaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 40 GGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 899999999999999999999999975
No 251
>PLN02463 lycopene beta cyclase
Probab=95.95 E-value=0.006 Score=62.45 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+-+.|.+.+.+.|++++ .++|++|..++ ++ +.|+ .+|++++||.||.|.+...
T Consensus 114 ~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~-~~-~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 114 KKLKSKMLERCIANGVQFH-QAKVKKVVHEE-SK-SLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC-Ce-EEEEECCCCEEEcCEEEECcCCCc
Confidence 3566778888888899986 67999999876 54 3577 7888999999999998764
No 252
>PLN02507 glutathione reductase
Probab=95.91 E-value=0.0074 Score=63.03 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|++|..++ +++ .+. .+|+++.+|.||++++...
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTE-GGI-KVITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CeE-EEEECCCcEEEcCEEEEeecCCC
Confidence 4677888889999999999999999998765 443 355 6777899999999987553
No 253
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.008 Score=58.04 Aligned_cols=33 Identities=45% Similarity=0.638 Sum_probs=27.0
Q ss_pred CCChhHHHHHHHHHHcCCc-EEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLS-VAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~ 34 (523)
|||++||+||.+++++|.+ ++|+|+ ..+||...
T Consensus 10 G~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~ 43 (305)
T COG0492 10 GGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLT 43 (305)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccc
Confidence 8999999999999999999 666665 55776554
No 254
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.89 E-value=0.0088 Score=59.60 Aligned_cols=34 Identities=38% Similarity=0.551 Sum_probs=32.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++||++|..|++.|++|+|+|+.+.+||...
T Consensus 25 G~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 25 GAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 8999999999999999999999999999999764
No 255
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.83 E-value=0.04 Score=54.75 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=49.8
Q ss_pred Cceeec-CCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e-CCeEEEcCEEEEcCChHH
Q psy893 220 GAWAYP-EGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T-NGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 220 g~~~~~-~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~-~g~~~~ad~vI~a~~~~~ 287 (523)
|.. || ..-...++++|...+++.|++|+++++|++| ++ ++ ..+. . ++..+.||+||+|++-..
T Consensus 76 grv-fP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~-~~-~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 76 GRV-FPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG-GT-LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CEE-CCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC-Cc-EEEEECCCceEEecCEEEEcCCCcc
Confidence 444 77 4567899999999999999999999999999 33 33 4566 3 335799999999998654
No 256
>PRK13984 putative oxidoreductase; Provisional
Probab=95.75 E-value=0.0097 Score=63.95 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=32.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|+|.+||+||..|+++|++|+|+|+.+.+||...
T Consensus 290 GaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 290 GSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 8999999999999999999999999999999764
No 257
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=95.68 E-value=0.0099 Score=61.78 Aligned_cols=57 Identities=16% Similarity=0.310 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|++|..++ +....|+ .+|+++.+|.||++++...
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~-~~~~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNA-DGSKHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence 5778899999999999999999999998765 3334456 6777899999999988553
No 258
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.66 E-value=0.01 Score=61.49 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCC--eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g--~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|++|++++.|++|..++ +.+ .+..+| .++.+|.||++++...
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~~v-~~~~~g~~~~i~~D~vivA~G~~p 268 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYK-KQA-LFEYEGSIQEVNAEFVLVSVGRKP 268 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-CEE-EEEECCceEEEEeCEEEEecCCcc
Confidence 4678888899999999999999999998654 322 233444 3689999999988654
No 259
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.64 E-value=0.011 Score=60.16 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe--EEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~--~~~ad~vI~a~~~~~ 287 (523)
-..+.+.+.+.+++.|++++++++|++++..+ +. +.++ .+|+ ++++|.|++|++-.-
T Consensus 213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~-~~-v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 213 DPEISKELTKQLEKGGVKILLNTKVTAVEKKD-DG-VLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred CHHHHHHHHHHHHhCCeEEEccceEEEEEecC-Ce-EEEEEecCCCCEEEeeEEEEccCCcc
Confidence 45788999999999889999999999999876 44 3455 6665 788999999998654
No 260
>PLN02546 glutathione reductase
Probab=95.61 E-value=0.011 Score=62.41 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|.+|...+ +....+. .+++...+|.||++++...
T Consensus 293 ~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~-~g~v~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 293 EEVRDFVAEQMSLRGIEFHTEESPQAIIKSA-DGSLSLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcC-CCEEEEEECCeEEEecCEEEEeecccc
Confidence 4566778888999999999999999998754 3333355 4454445899999988654
No 261
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=95.60 E-value=0.011 Score=62.10 Aligned_cols=55 Identities=25% Similarity=0.340 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
.+...|.+.+++. |+++ +...|++|..++ +++.+|. .+|..+.|+.||.|++.+.
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~-grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIVEN-GRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEecC-CEEEEEEECCCCEEECCEEEEeeCcch
Confidence 4566677777766 6787 567799998887 8888898 7888999999999999653
No 262
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.59 E-value=0.011 Score=62.08 Aligned_cols=32 Identities=28% Similarity=0.587 Sum_probs=28.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++||+||.+|++.|++|+|+|. .+||.+.
T Consensus 218 GgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 218 GGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 8999999999999999999999986 3788653
No 263
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.54 E-value=0.019 Score=43.39 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=28.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG 30 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G 30 (523)
|||..|+-+|..|++.|.+|+|+|+++.+.
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 899999999999999999999999999876
No 264
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=95.46 E-value=0.013 Score=60.74 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|.+|..++ +++ .|. .+|+++.+|.||++++...
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~p 274 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVP 274 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCc
Confidence 4567788899999999999999999998765 444 355 6788899999999977654
No 265
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=95.46 E-value=0.011 Score=59.37 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+-+.+.+.+. .++.+++++.|++|...+ +. +.|+ .+|++++|+.||-+.++..
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~-~~-~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETG-DG-VLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecC-ce-EEEEECCCCEEEeeEEEECCCccc
Confidence 456677778777 566789999999999887 43 3455 8888999999999988543
No 266
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.41 E-value=0.014 Score=61.39 Aligned_cols=31 Identities=35% Similarity=0.612 Sum_probs=28.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 33 (523)
|||++||+||..|++.|++|+|+|. ++||.+
T Consensus 219 GgGpAGl~AA~~la~~G~~v~li~~--~~GG~~ 249 (515)
T TIGR03140 219 GGGPAGAAAAIYAARKGLRTAMVAE--RIGGQV 249 (515)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEec--CCCCcc
Confidence 8999999999999999999999985 578864
No 267
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.38 E-value=0.013 Score=64.52 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=26.6
Q ss_pred CCChhHHHHHHHHHHc--CCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARA--GLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~ 28 (523)
|||++||+||..|+++ |++|+|+||++.
T Consensus 7 GaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 7 GGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 8999999999999998 899999999875
No 268
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.32 E-value=0.038 Score=50.12 Aligned_cols=34 Identities=44% Similarity=0.560 Sum_probs=28.4
Q ss_pred CCChhHHHHHHHHHHcCCc-EEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLS-VAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~ 34 (523)
|||++||++|+.|.++|.+ |+|+|+++.+||...
T Consensus 4 GaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~ 38 (203)
T PF13738_consen 4 GAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR 38 (203)
T ss_dssp --SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH
T ss_pred CcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE
Confidence 8999999999999999999 999999999999754
No 269
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=95.25 E-value=0.019 Score=52.03 Aligned_cols=28 Identities=36% Similarity=0.487 Sum_probs=25.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|||++||+||..|++.|++|+|+|+.+.
T Consensus 6 GgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 6 GGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred ecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 8999999999999999999999977553
No 270
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.15 E-value=0.019 Score=61.57 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=31.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccC-CCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERR-HVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~-~~~GG~~~ 34 (523)
|||.+|.+||..+++.|.+|+|+|+. +.+||.|-
T Consensus 123 G~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 123 GCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 89999999999999999999999974 46899885
No 271
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.08 E-value=0.018 Score=61.95 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHCCc--EEEeCceeeEEEECCCC-CeEEEE-e------CC--eEEEcCEEEEcCChHHHHHhhCC
Q psy893 231 AVSQALARSAQASGA--QLFTSQTVTEITLDSDK-RASGVV-T------NG--LEIKAKYVLSNTTAKCTLLDLIP 294 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~~-~~~~v~-~------~g--~~~~ad~vI~a~~~~~~~~~ll~ 294 (523)
.+-+.|.+.+.+.|+ +++++++|++++.++++ ..+.|+ . +| ++++||.||-|=+.+...++.+.
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 456677788877764 78999999999876422 112344 3 35 57999999999999887888774
No 272
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=94.80 E-value=0.027 Score=58.67 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC---eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG---LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g---~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|++|++++.|.+|...+ +.+ .|+ .++ +++.+|.||++++...
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~~~~~~~i~~D~vl~a~G~~p 279 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-AKV-KVTFTDSTNGIEEEYDTVLLAIGRDA 279 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeE-EEEEecCCcceEEEeCEEEEEecCCc
Confidence 4677888899999999999999999998765 443 355 444 4789999999988654
No 273
>KOG1298|consensus
Probab=94.74 E-value=0.024 Score=54.76 Aligned_cols=27 Identities=41% Similarity=0.425 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|||++|-+.|+.|+|.|.+|+|+||.-
T Consensus 52 GAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 52 GAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred CCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 899999999999999999999999964
No 274
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=94.42 E-value=0.031 Score=55.42 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA 285 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~ 285 (523)
.+.+.+.+.+++. +.+| ....|++|..++ +++++|+ .+|+.+.+|.||+|+++
T Consensus 96 ~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~-~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTI-IQGEVTDLIVEN-GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHTSTTEEE-EES-EEEEEECT-TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHhcCCCeEE-EEcccceEEecC-CeEEEEEeCCCCEEecCEEEEeccc
Confidence 5566677777774 5777 467899999998 9999999 88999999999999998
No 275
>PRK06996 hypothetical protein; Provisional
Probab=94.33 E-value=0.036 Score=56.30 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC---eEEEcCEEEEcCCh
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG---LEIKAKYVLSNTTA 285 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g---~~~~ad~vI~a~~~ 285 (523)
..+-+.|.+.+++.|++++++++|++|..++ ..+ .++ .++ ++++||.||-|-+.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~-~~v-~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDA-DGV-TLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecC-CeE-EEEECCCCcceEEeeeEEEECCCC
Confidence 3677888999999999999999999998776 444 344 433 58999999998663
No 276
>KOG1335|consensus
Probab=93.98 E-value=0.052 Score=52.49 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCC--eEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNG--LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g--~~~~ad~vI~a~~~~~ 287 (523)
..+.+++.+.|.+.|.+++++++|..+..+++|.+ .|. .++ +++++|.+.++++-.-
T Consensus 252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 37888889999999999999999999999885554 343 233 3789999888887554
No 277
>PRK02106 choline dehydrogenase; Validated
Probab=93.91 E-value=0.049 Score=57.96 Aligned_cols=47 Identities=21% Similarity=0.211 Sum_probs=37.8
Q ss_pred HCCcEEEeCceeeEEEECCCCCeEEEE-eC-Ce---EEEcCEEEEcCChHHHH
Q psy893 242 ASGAQLFTSQTVTEITLDSDKRASGVV-TN-GL---EIKAKYVLSNTTAKCTL 289 (523)
Q Consensus 242 ~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~-g~---~~~ad~vI~a~~~~~~~ 289 (523)
..+.+|++++.|++|..++ +++++|+ .+ +. .+.++.||+|++...+-
T Consensus 213 ~~nl~i~~~a~V~rI~~~~-~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP 264 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG-KRAVGVEYERGGGRETARARREVILSAGAINSP 264 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC-CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCH
Confidence 4469999999999999987 8899998 33 22 35789999999987653
No 278
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=93.65 E-value=0.24 Score=52.67 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
..|...|.+.+++.|++|+.++.|+++..++ |+++||. . +|+ .+.|+.||+|++-..
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLMED-GECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEeeC-CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 4789999999999999999999999999876 8999987 2 454 578999999988754
No 279
>KOG2852|consensus
Probab=93.55 E-value=0.024 Score=52.60 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-e---C-CeEEEcCEEEEcCChHHHHHhhCCC
Q psy893 230 GAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-T---N-GLEIKAKYVLSNTTAKCTLLDLIPK 295 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~---~-g~~~~ad~vI~a~~~~~~~~~ll~~ 295 (523)
+.++..|++.+++.| |++.++. |.++..+. .++.+|. . + .....++++|++++||. .+|++.
T Consensus 147 ~lFc~~i~sea~k~~~V~lv~Gk-v~ev~dEk-~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT--skllp~ 214 (380)
T KOG2852|consen 147 YLFCHFILSEAEKRGGVKLVFGK-VKEVSDEK-HRINSVPKAEAEDTIIKADVHKIVVSAGPWT--SKLLPF 214 (380)
T ss_pred HHHHHHHHHHHHhhcCeEEEEee-eEEeeccc-ccccccchhhhcCceEEeeeeEEEEecCCCc--hhhccc
Confidence 467788888888886 8888774 77776554 6666665 2 2 34567789999999998 577764
No 280
>KOG0042|consensus
Probab=93.55 E-value=0.23 Score=50.43 Aligned_cols=57 Identities=28% Similarity=0.359 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
++.-.++=.+..+|..+.-+.+|.++..++++++.|++ . .|+ +++|+.||.|++|..
T Consensus 225 Rmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs 287 (680)
T KOG0042|consen 225 RMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFS 287 (680)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCcc
Confidence 56666666666789999888999999988767777776 3 354 568899999988863
No 281
>KOG1336|consensus
Probab=93.53 E-value=0.18 Score=50.51 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.++++++|+++++++.+.+++.+.+|+++.|. .||.++.||.||+-++..-
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 367788999999999999999999999988778999898 9999999999999888765
No 282
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.27 E-value=0.3 Score=36.71 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG 271 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g 271 (523)
...+.+.+.+.+++.|+++++++.|.+|..++ +++. |+ .||
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~~~-V~~~~g 80 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDG-DGVE-VTLEDG 80 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TSEE-EEEETS
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CEEE-EEEecC
Confidence 45778888999999999999999999999988 5565 77 765
No 283
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.99 E-value=0.34 Score=51.64 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~ 287 (523)
-..|...|.+.+.+.|++|+.++.++++..+++|+|+||. . +|+ .+.|+.||+|++-..
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 3578899999998899999999999999986338999987 2 454 568999999988764
No 284
>KOG2960|consensus
Probab=92.70 E-value=0.024 Score=49.99 Aligned_cols=34 Identities=38% Similarity=0.525 Sum_probs=30.8
Q ss_pred CCChhHHHHHHHHHHc--CCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~ 34 (523)
|+|-+||+|||..+++ ..+|+|+|+.-.|||.++
T Consensus 83 GAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 83 GAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred CCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 8999999999999976 579999999999999875
No 285
>PRK06116 glutathione reductase; Validated
Probab=92.58 E-value=0.42 Score=49.40 Aligned_cols=33 Identities=39% Similarity=0.577 Sum_probs=30.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++|++||..|+++|++|+|+|+. .+||.|.
T Consensus 11 G~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 11 GGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 89999999999999999999999996 7899774
No 286
>KOG1800|consensus
Probab=92.54 E-value=0.14 Score=49.57 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=32.1
Q ss_pred CCChhHHHHHHHHHHc--CCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~s 35 (523)
|+|++|+-||..|-++ +.+|.|+|+.+.|+|..+.
T Consensus 27 GsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 27 GSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 8999999999999885 6899999999999999865
No 287
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=92.39 E-value=0.11 Score=52.68 Aligned_cols=33 Identities=36% Similarity=0.480 Sum_probs=31.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 33 (523)
|+|..||.+|..|+++|++|+|+|+.+++||..
T Consensus 143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 (415)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence 899999999999999999999999999999875
No 288
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.39 E-value=0.12 Score=51.90 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=25.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|++|+++|+.|+++|++|+|+|+..
T Consensus 7 GgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 7 GGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 899999999999999999999999865
No 289
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=92.33 E-value=0.47 Score=47.24 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=22.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEE-ccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVL-ERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vl-E~~~~~ 29 (523)
|||++|+.||+.+|+.|.+|+|+ ++.+.+
T Consensus 6 GgG~AG~eAA~aaAr~G~~V~Lit~~~d~i 35 (392)
T PF01134_consen 6 GGGHAGCEAALAAARMGAKVLLITHNTDTI 35 (392)
T ss_dssp SSSHHHHHHHHHHHHTT--EEEEES-GGGT
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEeeccccc
Confidence 89999999999999999999999 333333
No 290
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.13 E-value=0.13 Score=53.10 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~ 286 (523)
..+.+.+.+.+++.|++++++++|.+|..+ +++..+..++.++.+|.||++++..
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~--~~~~~v~~~~~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIGE--DKVEGVVTDKGEYEADVVIVATGVK 245 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEecC--CcEEEEEeCCCEEEcCEEEECcCCC
Confidence 467788889999999999999999999643 4455555445579999999998865
No 291
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=91.99 E-value=0.14 Score=48.70 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe--EEEcCEEEEcCChHH
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~--~~~ad~vI~a~~~~~ 287 (523)
++-+.|...+++.|+.+..+-+|......+ ++++.|. .+.. .++||.+|+|++...
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEecccccCCCChhHeeeeccccc
Confidence 677888888889999999999999999888 8888887 5544 457888888776543
No 292
>PRK07846 mycothione reductase; Reviewed
Probab=91.63 E-value=0.15 Score=52.71 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
.+.+.+.+. .+.|++++++++|++|..++ +++ .|. .+|+++.+|.||++++...
T Consensus 208 ~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 208 DISERFTEL-ASKRWDVRLGRNVVGVSQDG-SGV-TLRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred HHHHHHHHH-HhcCeEEEeCCEEEEEEEcC-CEE-EEEECCCcEeecCEEEEEECCcc
Confidence 455555543 35689999999999998765 443 355 6788899999999988654
No 293
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.15 E-value=0.18 Score=52.06 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
.+.+.+.+.+ +.|+++++++.|++|..++ +++ .|. .+|+++.+|.||++++...
T Consensus 211 ~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 211 DISDRFTEIA-KKKWDIRLGRNVTAVEQDG-DGV-TLTLDDGSTVTADVLLVATGRVP 265 (452)
T ss_pred HHHHHHHHHH-hcCCEEEeCCEEEEEEEcC-CeE-EEEEcCCCEEEcCEEEEeeccCc
Confidence 4555555544 5689999999999998765 443 355 6777899999999988654
No 294
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=91.13 E-value=0.77 Score=47.86 Aligned_cols=34 Identities=35% Similarity=0.445 Sum_probs=30.9
Q ss_pred CCChhHHHHHHHHHHc-CCcEEEEccC--------CCCCccee
Q psy893 1 EAGHNGLVSAAYLARA-GLSVAVLERR--------HVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~-G~~V~vlE~~--------~~~GG~~~ 34 (523)
|||.+|.+||..+++. |.+|+|+|+. +.+||.|-
T Consensus 10 G~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl 52 (486)
T TIGR01423 10 GAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV 52 (486)
T ss_pred CCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence 8999999999999997 9999999984 57899885
No 295
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=91.04 E-value=0.18 Score=47.99 Aligned_cols=30 Identities=37% Similarity=0.453 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG 30 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G 30 (523)
|||++|--|||.+|++|.+|.++|-++.-+
T Consensus 10 GaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 10 GAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred cccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 899999999999999999999999987543
No 296
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=90.59 E-value=0.9 Score=45.70 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
.+.+.+.+.+++.|++++++++|++|..++ +. ..|+ .+|+++.+|.||++++...
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTD-SG-IRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEccC-CE-EEEEEcCCcEEECCEEEECcCCCc
Confidence 566778888999999999999999998765 43 3466 7888999999999987643
No 297
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.51 E-value=0.9 Score=50.64 Aligned_cols=56 Identities=18% Similarity=0.321 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~ 286 (523)
...+.+.+.++++|++|++++.|++|..++++....|. .+|+++.+|.||++++..
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence 45567888899999999999999999865323445566 889899999999998854
No 298
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=90.51 E-value=0.19 Score=53.09 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE--eC-C---e-EEEcCEEEEcCChHHH
Q psy893 231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV--TN-G---L-EIKAKYVLSNTTAKCT 288 (523)
Q Consensus 231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~--~~-g---~-~~~ad~vI~a~~~~~~ 288 (523)
+-..++...+.+. +.+|++++.|++|..++ +++++|. .+ + + .+.++.||++++...+
T Consensus 203 sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~-~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 203 SAARAYLKPALKRPNLTLLTGARVRRILLEG-DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred echhhcchhHhcCCceEEecCCEEEEEEEEC-CeeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence 3344444444444 59999999999999999 8888887 32 3 2 2467889998887765
No 299
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=90.50 E-value=0.26 Score=50.73 Aligned_cols=52 Identities=8% Similarity=0.081 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|++++++++|++|.. . .|+ .+|+++.+|.||++++...
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEECcCCCc
Confidence 45777888999999999999999999952 2 355 6777899999999988653
No 300
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=90.49 E-value=0.27 Score=49.85 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
.+.+.+.+.+++.|+++++++.|++|.. + +.+ .|+ .+|+++.+|.||++++...
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~-~~~-~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G-EKV-ELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C-CEE-EEEECCCCEEECCEEEECCCCCh
Confidence 4566788888899999999999999976 3 333 456 7888899999999988654
No 301
>KOG0405|consensus
Probab=90.30 E-value=0.28 Score=47.04 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=44.7
Q ss_pred CCHHH-HHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChH
Q psy893 227 GGMGA-VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 227 gG~~~-l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~ 286 (523)
.+... +.+.+.+.++..|++++.++.++++....++....++..|....+|.+++|++-.
T Consensus 226 R~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 226 RGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred cchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCC
Confidence 34544 5567778999999999999999999887645443333666555699999998865
No 302
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=90.18 E-value=1.1 Score=46.48 Aligned_cols=34 Identities=38% Similarity=0.631 Sum_probs=31.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++|++||..|++.|++|+|+|+ +.+||.|..
T Consensus 8 G~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 8 GGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 8999999999999999999999999 889998753
No 303
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=89.87 E-value=1.2 Score=45.95 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=30.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+|++||..|++.|++|+|+||. .+||.|-
T Consensus 9 G~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 9 GGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 89999999999999999999999995 5899775
No 304
>PLN02507 glutathione reductase
Probab=89.78 E-value=1.1 Score=46.95 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=30.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEcc---------CCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLER---------RHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~---------~~~~GG~~~ 34 (523)
|||.+|++||.+|++.|.+|+|+|+ .+.+||.|-
T Consensus 32 G~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~ 74 (499)
T PLN02507 32 GAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV 74 (499)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee
Confidence 8999999999999999999999996 356888884
No 305
>PRK09126 hypothetical protein; Provisional
Probab=89.51 E-value=1.2 Score=44.87 Aligned_cols=29 Identities=41% Similarity=0.559 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|||++||++|..|+++|++|+|+||...+
T Consensus 10 GgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 10 GAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 89999999999999999999999998865
No 306
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=89.49 E-value=1.3 Score=45.55 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=27.0
Q ss_pred CCChhHHHHHHHHHHcC--CcEEEEccCCCCC
Q psy893 1 EAGHNGLVSAAYLARAG--LSVAVLERRHVLG 30 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G--~~V~vlE~~~~~G 30 (523)
|||++||+||..|++.| .+|+|+|+++..+
T Consensus 7 GgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 7 GGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred CCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 89999999999999875 5899999998764
No 307
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=89.13 E-value=0.96 Score=46.31 Aligned_cols=51 Identities=25% Similarity=0.228 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~ 286 (523)
..+.+.+.+.++++|++++++++|++|.. + .|. .+|+++.+|.||++++..
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~---~---~v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD---K---EVVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC---C---EEEECCCCEEEccEEEEccCCC
Confidence 46778889999999999999999999963 2 255 788899999999987743
No 308
>PRK08013 oxidoreductase; Provisional
Probab=89.08 E-value=1.3 Score=45.01 Aligned_cols=29 Identities=45% Similarity=0.485 Sum_probs=27.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|||++||++|+.|+++|++|+|+|+++.+
T Consensus 10 GaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 10 GGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 89999999999999999999999998764
No 309
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.06 E-value=0.36 Score=50.05 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=27.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|.|.+|++||..|+++|++|++.|++..+
T Consensus 7 G~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 7 GLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 89999999999999999999999998764
No 310
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=89.02 E-value=1.4 Score=45.78 Aligned_cols=35 Identities=34% Similarity=0.446 Sum_probs=32.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++|++||.+|++.|++|+|+|+++.+||.|..
T Consensus 12 GaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 12 GSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 89999999999999999999999999889998753
No 311
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.01 E-value=1.4 Score=42.39 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++ +.|++|..++ +.+ .|+ .+++++.+|+||+|++...
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~-~~~-~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSD-RPF-KVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEEEecC-Cee-EEEeCCCCEEEeCEEEECCCCCc
Confidence 36778888889999999999 8999998865 433 466 6677899999999999754
No 312
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.00 E-value=1.5 Score=45.43 Aligned_cols=34 Identities=41% Similarity=0.679 Sum_probs=31.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++|++||..|++.|++|+|+|+.. +||.|..
T Consensus 11 GaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 11 GAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 899999999999999999999999987 8997753
No 313
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.82 E-value=1.5 Score=45.04 Aligned_cols=34 Identities=38% Similarity=0.524 Sum_probs=31.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC-CCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV-LGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~-~GG~~~ 34 (523)
|||.+|++||..|++.|++|+|+||.+. +||.|-
T Consensus 10 G~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 10 GFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 8999999999999999999999999864 699763
No 314
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.72 E-value=0.42 Score=41.35 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=25.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|||..|.+.|..|+++|++|+++.++.
T Consensus 6 GaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 6 GAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp SSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 899999999999999999999999876
No 315
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=88.68 E-value=1.5 Score=45.30 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=31.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++|++||..|++.|++|+|+|+ +.+||.|.
T Consensus 9 G~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 9 GAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 8999999999999999999999999 47999885
No 316
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=88.67 E-value=1.6 Score=44.13 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=25.6
Q ss_pred CCChhHHHHHHHHHHc---CCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARA---GLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~---G~~V~vlE~~~ 27 (523)
|||++||++|+.|+++ |++|+|+||..
T Consensus 10 GaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 10 GGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred CcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 8999999999999998 99999999964
No 317
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=88.51 E-value=1.4 Score=44.44 Aligned_cols=29 Identities=41% Similarity=0.497 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|||++||++|+.|+++|++|+|+|+++.+
T Consensus 14 GaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 14 GGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 89999999999999999999999998754
No 318
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=88.32 E-value=1.9 Score=42.59 Aligned_cols=29 Identities=48% Similarity=0.662 Sum_probs=25.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|||++||++|..|+++|++|+|+||++.+
T Consensus 8 GaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 8 GAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp --SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CCCHHHHHHHHHHHhcccccccchhcccc
Confidence 89999999999999999999999998764
No 319
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=88.31 E-value=1.5 Score=48.76 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~ 286 (523)
.+.+.+.+.++++|++|++++.|++|..+ +++.+|+ .+|+++.+|.||++++..
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECCCCEEEcCEEEECCCCC
Confidence 44566788888999999999999999754 4566777 889899999999998854
No 320
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=88.09 E-value=1.5 Score=45.43 Aligned_cols=33 Identities=45% Similarity=0.618 Sum_probs=30.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+|+.||..|++.|.+|+|+|+.. +||.|-
T Consensus 8 G~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~ 40 (466)
T PRK07845 8 GGGPGGYEAALVAAQLGADVTVIERDG-LGGAAV 40 (466)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccc
Confidence 899999999999999999999999875 799875
No 321
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=87.97 E-value=2.2 Score=44.41 Aligned_cols=34 Identities=32% Similarity=0.552 Sum_probs=31.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||.+|++||.+|++.|++|+|+|+. .+||.|..
T Consensus 11 G~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 11 GGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 89999999999999999999999996 78998853
No 322
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.50 E-value=0.54 Score=41.87 Aligned_cols=28 Identities=32% Similarity=0.245 Sum_probs=22.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|.|..||.+|..||++|++|+.+|.++.
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 7899999999999999999999998764
No 323
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=87.30 E-value=2.2 Score=43.24 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=26.3
Q ss_pred CCChhHHHHHHHHHHcCC--cEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGL--SVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~--~V~vlE~~~~~ 29 (523)
|||++|++||..|++.|+ +|+|+++.+..
T Consensus 10 GgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 10 GGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 899999999999999987 79999998654
No 324
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=87.13 E-value=2 Score=43.24 Aligned_cols=31 Identities=39% Similarity=0.539 Sum_probs=28.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG 31 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG 31 (523)
|||++|+++|+.|+++|++|+|+|+++..||
T Consensus 6 GaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 6 GGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 8999999999999999999999999877665
No 325
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=86.99 E-value=1.7 Score=46.13 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=28.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccC-CCCCc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERR-HVLGG 31 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~-~~~GG 31 (523)
|||++|+.||+.+|+.|.+|+|+|++ +.+|+
T Consensus 11 GGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 11 GGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred CchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 89999999999999999999999998 46665
No 326
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=86.99 E-value=2.2 Score=43.77 Aligned_cols=35 Identities=40% Similarity=0.606 Sum_probs=32.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||.+|.+||.++++.|.+|+|+|+...+||.|-.
T Consensus 11 G~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 11 GAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred CCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 89999999999999999999999999889999854
No 327
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.97 E-value=2.8 Score=43.50 Aligned_cols=33 Identities=39% Similarity=0.617 Sum_probs=30.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+|++||.+|++.|++|+|+|++ .+||.|.
T Consensus 11 G~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~ 43 (466)
T PRK07818 11 GAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL 43 (466)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence 89999999999999999999999985 6788775
No 328
>PTZ00058 glutathione reductase; Provisional
Probab=86.90 E-value=2.9 Score=44.35 Aligned_cols=33 Identities=36% Similarity=0.571 Sum_probs=30.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+|++||..+++.|.+|+|+|++ .+||.|-
T Consensus 55 G~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 55 GGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred CcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence 89999999999999999999999996 6899884
No 329
>PRK14694 putative mercuric reductase; Provisional
Probab=86.85 E-value=2.4 Score=44.11 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=30.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+|++||..|++.|++|+|+|+. .+||.|.
T Consensus 13 GaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 13 GSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 89999999999999999999999986 6899875
No 330
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=86.83 E-value=1.9 Score=43.52 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=25.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|||++||++|..|+++|++|+|+|+.+
T Consensus 10 GgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 10 GGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 899999999999999999999999875
No 331
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.80 E-value=2.1 Score=45.00 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
...+.+.+.+.+++.|++++++++|.+|..++ +. ..|. .+|+.+.+|+||+|++...
T Consensus 266 ~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~-~~-~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 266 GSQLAANLEEHIKQYPIDLMENQRAKKIETED-GL-IVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC-Ce-EEEEECCCCEEEeCEEEECCCCCc
Confidence 45688899999999999999999999998765 43 3455 6777899999999999753
No 332
>PRK06370 mercuric reductase; Validated
Probab=86.79 E-value=2.4 Score=44.01 Aligned_cols=33 Identities=45% Similarity=0.629 Sum_probs=29.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++|++||.+|++.|++|+|+|+. .+||.|-
T Consensus 12 G~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 12 GAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 89999999999999999999999986 5677664
No 333
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=86.72 E-value=0.53 Score=48.23 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|||.+||.+|..|.+.+++|+|+|++++
T Consensus 17 GgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 17 GTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 8999999999999877899999998775
No 334
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=86.72 E-value=2.2 Score=43.92 Aligned_cols=35 Identities=34% Similarity=0.572 Sum_probs=31.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC-CCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH-VLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~-~~GG~~~s 35 (523)
|||.+|++||.+|+++|++|+|+|+.+ .+||.|..
T Consensus 10 GgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 10 GFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 899999999999999999999999976 47998753
No 335
>PLN02785 Protein HOTHEAD
Probab=86.47 E-value=0.62 Score=49.66 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=38.4
Q ss_pred HHHHHHHHHCCcEEEeCceeeEEEECCC---CCeEEEE-e--CCeEEE-------cCEEEEcCChHHH
Q psy893 234 QALARSAQASGAQLFTSQTVTEITLDSD---KRASGVV-T--NGLEIK-------AKYVLSNTTAKCT 288 (523)
Q Consensus 234 ~~l~~~~~~~G~~i~~~~~V~~I~~~~~---~~~~~v~-~--~g~~~~-------ad~vI~a~~~~~~ 288 (523)
..+.......+.+|++++.|++|..+++ ++++||+ . +|.+.. ++.||++++...+
T Consensus 224 a~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~s 291 (587)
T PLN02785 224 AELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGS 291 (587)
T ss_pred HHHHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCC
Confidence 3344445556799999999999999752 2789998 3 454322 3579998887654
No 336
>PLN02463 lycopene beta cyclase
Probab=86.45 E-value=2.3 Score=43.78 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=25.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|||++||++|+.|+++|++|+|+|+++
T Consensus 35 GaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 35 GGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 899999999999999999999999865
No 337
>PRK05868 hypothetical protein; Validated
Probab=86.33 E-value=2.2 Score=42.77 Aligned_cols=29 Identities=38% Similarity=0.502 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|||++||++|..|+++|++|+|+||++.+
T Consensus 8 GgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 8 GASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 89999999999999999999999998764
No 338
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.28 E-value=2.5 Score=44.58 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
...+.+.|.+.+++.|++++++++|.+|...+ +. ..|. .+|+++.+|.||+|++...
T Consensus 265 ~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~-~~-~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 265 GPKLAAALEEHVKEYDVDIMNLQRASKLEPAA-GL-IEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-Ce-EEEEECCCCEEEcCEEEECCCCCc
Confidence 45788999999999999999999999998865 43 3466 6777899999999999753
No 339
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=86.20 E-value=1.7 Score=44.29 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=27.3
Q ss_pred CCChhHHHHHHHHHHcC-CcEEEEccCCCCC
Q psy893 1 EAGHNGLVSAAYLARAG-LSVAVLERRHVLG 30 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G-~~V~vlE~~~~~G 30 (523)
|||++||++|..|+++| .+|+|+||++.++
T Consensus 7 GgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 7 GGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 89999999999999998 5999999987653
No 340
>PRK10262 thioredoxin reductase; Provisional
Probab=86.03 E-value=2 Score=42.00 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC------eEEEcCEEEEcCChHH
Q psy893 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG------LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g------~~~~ad~vI~a~~~~~ 287 (523)
.+.+.+.+.+++.|+++++++.|++|..++ +++.+|+ .++ +++.+|.||++++...
T Consensus 186 ~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 186 ILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred HHHHHHHhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence 466778888889999999999999998665 5565665 322 3689999999987654
No 341
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.01 E-value=0.71 Score=48.18 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|+|.+|+++|..|+++|++|+++|+++.
T Consensus 23 G~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 23 GLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 8999999999999999999999998763
No 342
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=85.78 E-value=2.3 Score=43.56 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~ 286 (523)
..+.+.+.+.+++.|+++++++.|.+|..+ +.+ +. .+|+++.+|.||++++..
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEeCEEEECCCcc
Confidence 356777888899999999999999999754 333 34 678889999999998865
No 343
>PRK14727 putative mercuric reductase; Provisional
Probab=85.50 E-value=2.6 Score=43.88 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+|++||..|++.|.+|+|+|+.+.+||.|.
T Consensus 23 G~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~ 56 (479)
T PRK14727 23 GSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV 56 (479)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence 8999999999999999999999999888999985
No 344
>PRK06126 hypothetical protein; Provisional
Probab=85.50 E-value=3.4 Score=43.92 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=26.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|||++||++|..|+++|++|+|+||++.
T Consensus 14 GaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 14 GGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 8999999999999999999999999863
No 345
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=85.01 E-value=3.3 Score=41.57 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=26.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|||++||++|..|+++|++|+|+|+.+.
T Consensus 8 GgG~~Gl~~A~~L~~~G~~v~l~E~~~~ 35 (374)
T PRK06617 8 GCGLSGMLTALSFAQKGIKTTIFESKSV 35 (374)
T ss_pred CCCHHHHHHHHHHHcCCCeEEEecCCCC
Confidence 8999999999999999999999999753
No 346
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=84.77 E-value=1 Score=39.96 Aligned_cols=28 Identities=39% Similarity=0.455 Sum_probs=24.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|+|..|..-|..++.+|++|+++|.++.
T Consensus 6 GaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 6 GAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred cCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 8999999999999999999999999664
No 347
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=84.58 E-value=3.6 Score=42.56 Aligned_cols=33 Identities=30% Similarity=0.557 Sum_probs=29.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+|++||..|++.|.+|+|+|++. +||.|-
T Consensus 7 G~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~ 39 (458)
T PRK06912 7 GGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCL 39 (458)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCC
Confidence 899999999999999999999999975 677664
No 348
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=84.44 E-value=2.4 Score=42.37 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|++|. + + .|. .+|+++.+|.||++++...
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~-~---~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D-G---ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C-C---eEEeCCCCEEecCEEEEccCCCh
Confidence 3566778888999999999999999885 2 3 355 6788999999999988543
No 349
>KOG1346|consensus
Probab=84.37 E-value=1.1 Score=44.22 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCC
Q psy893 232 VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPK 295 (523)
Q Consensus 232 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~ 295 (523)
|.+.-.+.+++.|++|+-|..|+++.... +.+ .+. .||.+++.|.||++++-.-. ..|...
T Consensus 395 ls~wt~ekir~~GV~V~pna~v~sv~~~~-~nl-~lkL~dG~~l~tD~vVvavG~ePN-~ela~~ 456 (659)
T KOG1346|consen 395 LSQWTIEKIRKGGVDVRPNAKVESVRKCC-KNL-VLKLSDGSELRTDLVVVAVGEEPN-SELAEA 456 (659)
T ss_pred HHHHHHHHHHhcCceeccchhhhhhhhhc-cce-EEEecCCCeeeeeeEEEEecCCCc-hhhccc
Confidence 55666678888999999999999999876 544 355 89999999999999876542 355543
No 350
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=84.26 E-value=4.1 Score=42.45 Aligned_cols=34 Identities=41% Similarity=0.628 Sum_probs=30.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEcc------CCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLER------RHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~------~~~~GG~~~ 34 (523)
|||.+|++||.+|++.|.+|+|+|+ ...+||.|.
T Consensus 11 G~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 11 GAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence 8999999999999999999999998 367888774
No 351
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=84.23 E-value=0.72 Score=46.64 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCC-CeEEEE--eC-C--eEEEcCEEEEcCChH
Q psy893 230 GAVSQALARSAQA-SGAQLFTSQTVTEITLDSDK-RASGVV--TN-G--LEIKAKYVLSNTTAK 286 (523)
Q Consensus 230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~-~~~~v~--~~-g--~~~~ad~vI~a~~~~ 286 (523)
..+...|.+.+++ .+++|+.++.+.+|..++ + .+.||. .. + .++.|+.||+|++-.
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~-~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLIIED-GIGVAGVLVLNRNGELGTFRAKAVVLATGGL 195 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhhcC-CceEeEEEEecCCCeEEEEecCeEEEecCCC
Confidence 3678889988877 589999999999999988 6 444777 23 2 467899999987753
No 352
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=83.95 E-value=3.8 Score=42.15 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=26.1
Q ss_pred CCChhHHHHHHHHHH----cCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLAR----AGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~----~G~~V~vlE~~~~ 28 (523)
|||++||++|+.|++ +|++|+|+|+++.
T Consensus 7 GaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 7 GGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 899999999999999 8999999999654
No 353
>PRK07236 hypothetical protein; Provisional
Probab=83.61 E-value=3.5 Score=41.55 Aligned_cols=28 Identities=39% Similarity=0.525 Sum_probs=26.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|||++||++|..|+++|++|+|+||++.
T Consensus 13 GaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 13 GGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 8999999999999999999999999864
No 354
>PRK13748 putative mercuric reductase; Provisional
Probab=83.60 E-value=3.7 Score=43.79 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=31.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+|++||..|++.|.+|+|+|++ .+||.|-
T Consensus 105 G~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 105 GSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 89999999999999999999999997 7899875
No 355
>PTZ00052 thioredoxin reductase; Provisional
Probab=83.55 E-value=4 Score=42.80 Aligned_cols=34 Identities=32% Similarity=0.475 Sum_probs=30.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC--------CCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH--------VLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~--------~~GG~~~ 34 (523)
|||.+|++||.+|+++|++|+|+|+.. .+||.|-
T Consensus 12 G~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~ 53 (499)
T PTZ00052 12 GGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCV 53 (499)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceec
Confidence 899999999999999999999999732 4888874
No 356
>PRK06753 hypothetical protein; Provisional
Probab=83.53 E-value=3.4 Score=41.34 Aligned_cols=29 Identities=38% Similarity=0.552 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|||++||++|..|+++|++|+|+||++.+
T Consensus 7 GgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 7 GAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 89999999999999999999999998865
No 357
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=83.18 E-value=3.9 Score=42.67 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=29.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC--------CCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH--------VLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~--------~~GG~~~ 34 (523)
|||.+|+.||..+++.|.+|+|+|+.. .+||.|-
T Consensus 9 G~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~ 50 (484)
T TIGR01438 9 GGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV 50 (484)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence 899999999999999999999999742 4677663
No 358
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=83.15 E-value=0.98 Score=45.16 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=24.8
Q ss_pred CCChhHHHHHHHHHHc---CCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARA---GLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~---G~~V~vlE~~~~ 28 (523)
|||++|+.+|..|+++ +++|+|+|+++.
T Consensus 6 GgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 6 GGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 8999999999999754 689999998875
No 359
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=83.09 E-value=3.1 Score=42.78 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=26.8
Q ss_pred CCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q psy893 1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLG 30 (523)
Q Consensus 1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~G 30 (523)
|||++|++||..|++. +++|+|+|+++.++
T Consensus 8 GgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 8 GAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 8999999999999986 68999999988654
No 360
>PRK06475 salicylate hydroxylase; Provisional
Probab=83.04 E-value=5.8 Score=40.22 Aligned_cols=29 Identities=38% Similarity=0.532 Sum_probs=27.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|||++||++|..|+++|++|+|+||.+.+
T Consensus 9 GgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 9 GAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 89999999999999999999999998754
No 361
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=82.90 E-value=4.7 Score=41.78 Aligned_cols=33 Identities=39% Similarity=0.547 Sum_probs=30.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+|++||.+|++.|++|+|+|+.. +||.|-
T Consensus 7 GaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 7 GSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 899999999999999999999999976 777763
No 362
>PLN02546 glutathione reductase
Probab=82.54 E-value=5.1 Score=42.53 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=30.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccC---------CCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERR---------HVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~---------~~~GG~~~ 34 (523)
|||.+|+.||..|++.|.+|+|+|+. ..+||.|-
T Consensus 86 G~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~ 128 (558)
T PLN02546 86 GAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCV 128 (558)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCccc
Confidence 89999999999999999999999962 45788774
No 363
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=81.82 E-value=1.4 Score=46.87 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=44.6
Q ss_pred HHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 234 ~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~ 286 (523)
..|.+.+++.|.++++++.+++|.. . +++.+|+ .||..+.||.||.+++..
T Consensus 191 ~lL~~~le~~Gi~~~l~~~t~ei~g-~-~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 191 RLLRRKLEDLGIKVLLEKNTEEIVG-E-DKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHHHHhhcceeecccchhhhhc-C-cceeeEeecCCCcccceeEEEecccc
Confidence 4577888899999999999999987 3 6788999 999999999999998854
No 364
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=81.57 E-value=1.7 Score=37.17 Aligned_cols=27 Identities=41% Similarity=0.479 Sum_probs=25.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|+..|++|+++|++|.++-+..
T Consensus 5 G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 5 GAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp STSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 899999999999999999999999855
No 365
>PLN02661 Putative thiazole synthesis
Probab=81.25 E-value=8.1 Score=38.07 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-e---------CC-----eEEEcCEEEEcCChH
Q psy893 228 GMGAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-T---------NG-----LEIKAKYVLSNTTAK 286 (523)
Q Consensus 228 G~~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~---------~g-----~~~~ad~vI~a~~~~ 286 (523)
....+...|.+.+.+ .|++++.++.|.++..++ +++.||. . .+ ..+.|+.||+|++..
T Consensus 170 ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 334566777775554 689999999999999987 8888876 2 11 257999999999843
No 366
>KOG4716|consensus
Probab=80.94 E-value=2.1 Score=41.13 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---e-CCe--EEEcCEEEEcCChHHHHHhh
Q psy893 226 EGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---T-NGL--EIKAKYVLSNTTAKCTLLDL 292 (523)
Q Consensus 226 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~-~g~--~~~ad~vI~a~~~~~~~~~l 292 (523)
+|=-+.+++.+.+.++++|+++...+-+.+|+..++++. .|. . .++ +-.+|.|+.|++-.....+|
T Consensus 234 rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l 305 (503)
T KOG4716|consen 234 RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDL 305 (503)
T ss_pred ccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhc
Confidence 333467889999999999999999988888887664553 343 2 222 33678999999877654444
No 367
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=80.88 E-value=5.5 Score=41.18 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHCCcE--EEeCceeeEEEECCCCCeEEEE-eC-C-e--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQ--LFTSQTVTEITLDSDKRASGVV-TN-G-L--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~--i~~~~~V~~I~~~~~~~~~~v~-~~-g-~--~~~ad~vI~a~~~~~ 287 (523)
..+.+-|.+.++..|.+ |+++++|++|...+ +++ .|+ .+ + . +..+|+||+|++...
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w-~V~~~~~~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKW-RVQSKNSGGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeE-EEEEEcCCCceEEEEcCEEEEeccCCC
Confidence 56788888888888877 99999999999876 543 455 32 2 2 457999999998643
No 368
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=80.87 E-value=6.8 Score=40.65 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=32.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+|++||.+|+++|++|+|+|+++.+||.|-
T Consensus 10 G~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 10 GGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 8999999999999999999999998888999874
No 369
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=80.81 E-value=5.4 Score=41.17 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=37.7
Q ss_pred HHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---------CC-----------eEEEcCEEEEcCChH
Q psy893 236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---------NG-----------LEIKAKYVLSNTTAK 286 (523)
Q Consensus 236 l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---------~g-----------~~~~ad~vI~a~~~~ 286 (523)
..+.+++.|+++++++.+.+|..++++++++|+ . +| .++.+|.||++++..
T Consensus 315 ~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~ 386 (449)
T TIGR01316 315 EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNG 386 (449)
T ss_pred HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCC
Confidence 345677889999999999999865436676665 3 23 258899999998753
No 370
>KOG4405|consensus
Probab=80.75 E-value=7.7 Score=38.42 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=47.1
Q ss_pred eeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeE--EEE-eCCeEEEcCEEEEc
Q psy893 222 WAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRAS--GVV-TNGLEIKAKYVLSN 282 (523)
Q Consensus 222 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~--~v~-~~g~~~~ad~vI~a 282 (523)
+-||--|.+.|++++-+.+.-.|+-..++.+|+.|..+. +... .+. ..|+.+.++++|++
T Consensus 278 fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivldk-~s~~~~~~l~s~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 278 FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLDK-ESLDCKAILDSFGQRINAKNFVVS 340 (547)
T ss_pred ceeeccCCCcchHHHHHHHHHhcceEEeccchhheeecc-cccchhhhHhhhcchhcceeeeec
Confidence 347888999999999999999999999999999999987 4332 122 56777777776654
No 371
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.65 E-value=1.5 Score=42.80 Aligned_cols=28 Identities=32% Similarity=0.315 Sum_probs=26.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|+|..|.+.|..|+++|++|+++++++.
T Consensus 9 G~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 9 GAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred CccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 8999999999999999999999998753
No 372
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.61 E-value=1.5 Score=43.27 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..||++|..||+.||+|+.+|...
T Consensus 7 GtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 7 GTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 899999999999999999999999865
No 373
>PRK02106 choline dehydrogenase; Validated
Probab=79.79 E-value=2.9 Score=44.56 Aligned_cols=28 Identities=36% Similarity=0.372 Sum_probs=26.2
Q ss_pred CCChhHHHHHHHHHH-cCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLAR-AGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~-~G~~V~vlE~~~~ 28 (523)
|||.+|+.+|.+|++ .|++|+|||+.+.
T Consensus 12 G~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 12 GAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 899999999999999 8999999999753
No 374
>PRK06996 hypothetical protein; Provisional
Probab=79.78 E-value=5.8 Score=40.20 Aligned_cols=28 Identities=43% Similarity=0.633 Sum_probs=25.4
Q ss_pred CCChhHHHHHHHHHHcC----CcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAG----LSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G----~~V~vlE~~~~ 28 (523)
|||++|+++|+.|+++| .+|+|+|+.+.
T Consensus 18 GgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 18 GAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 89999999999999987 47999999764
No 375
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=78.87 E-value=0.63 Score=47.68 Aligned_cols=34 Identities=38% Similarity=0.563 Sum_probs=28.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||++|++||+.+|++|.+|+|+|+.+.+||...
T Consensus 6 GgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 6 GGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp --SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 8999999999999999999999999999999764
No 376
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=78.72 E-value=5.8 Score=41.22 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=37.9
Q ss_pred HHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e-----CC---------eEEEcCEEEEcCChH
Q psy893 237 ARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T-----NG---------LEIKAKYVLSNTTAK 286 (523)
Q Consensus 237 ~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~-----~g---------~~~~ad~vI~a~~~~ 286 (523)
.+.+++.|+++++++.+++|..++ +++++|+ . +| .++.+|.||++++..
T Consensus 336 ~~~~~~~GV~i~~~~~~~~i~~~~-g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~ 399 (471)
T PRK12810 336 VSNAHEEGVEREFNVQTKEFEGEN-GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFT 399 (471)
T ss_pred HHHHHHcCCeEEeccCceEEEccC-CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcC
Confidence 456678899999999999997655 7777765 2 22 468999999998743
No 377
>PRK11445 putative oxidoreductase; Provisional
Probab=78.50 E-value=9.4 Score=37.89 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|||++||++|..|+++ ++|+|+|+++.+
T Consensus 8 GaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 8 GLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 8999999999999999 999999998754
No 378
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.09 E-value=2.1 Score=44.20 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=25.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|-.|+++|..|+++|++|+++|++.
T Consensus 12 G~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 12 GAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 788899999999999999999999875
No 379
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=77.94 E-value=7.5 Score=40.21 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=37.0
Q ss_pred HHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e-------------------CCeEEEcCEEEEcCChH
Q psy893 236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T-------------------NGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 236 l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~-------------------~g~~~~ad~vI~a~~~~ 286 (523)
..+.+++.|+++++++.|.+|..++ +++.+|+ . +++++.+|.||++++..
T Consensus 317 ~~~~~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 386 (457)
T PRK11749 317 EVEHAKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT 386 (457)
T ss_pred HHHHHHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC
Confidence 4566778999999999999998765 5544443 1 22468999999998754
No 380
>KOG2852|consensus
Probab=77.88 E-value=5.1 Score=37.75 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=30.9
Q ss_pred CCChhHHHHHHHHHHcC------CcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAG------LSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G------~~V~vlE~~~~~GG~~~ 34 (523)
|||+.|.++|++|++.+ ..|+|+|+....||.+.
T Consensus 17 GGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 17 GGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred CCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 89999999999999987 78999999999888653
No 381
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=77.20 E-value=2.5 Score=42.47 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG 30 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G 30 (523)
|||..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 148 GgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l 177 (377)
T PRK04965 148 GGGLIGTELAMDLCRAGKAVTLVDNAASLL 177 (377)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEecCCccc
Confidence 899999999999999999999999987654
No 382
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.96 E-value=2.2 Score=41.06 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=26.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|+|..|...|..|+++|++|+++++++.
T Consensus 8 G~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 8 GAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 8999999999999999999999998764
No 383
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.70 E-value=2.7 Score=42.55 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.6
Q ss_pred CCChhHHHHHHHHHHc--C-CcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARA--G-LSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~--G-~~V~vlE~~~~~GG~~~ 34 (523)
|+|++|+..|.+|.+. . ..|.|+|++...|+-+.
T Consensus 8 GgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 8 GGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred CCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 8999999999999985 2 23999999999987654
No 384
>PRK07846 mycothione reductase; Reviewed
Probab=76.70 E-value=6.9 Score=40.43 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+|.+||.. ++|.+|+|+|+. .+||.|-
T Consensus 8 G~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~ 38 (451)
T PRK07846 8 GTGSGNSILDER--FADKRIAIVEKG-TFGGTCL 38 (451)
T ss_pred CCCHHHHHHHHH--HCCCeEEEEeCC-CCCCccc
Confidence 899999998876 469999999985 5788774
No 385
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.53 E-value=2.4 Score=40.78 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=25.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|.+.|..|+++|++|+++|.++
T Consensus 10 GaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 10 GAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 899999999999999999999999765
No 386
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=76.23 E-value=8.1 Score=39.02 Aligned_cols=57 Identities=25% Similarity=0.280 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEE--EE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASG--VV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~--v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..+.+.+.+.+++.|+++++++.|.+|.... +.... +. .++..+.+|.++++.+...
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKG-NTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEccc-CcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 5789999999999999999999999999876 54443 34 7788899999999876543
No 387
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=76.13 E-value=3.8 Score=45.59 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=37.3
Q ss_pred HHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 238 RSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 238 ~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
+.++++|++++++++|++|..++ . .|. .+|+++.+|++|+|++...
T Consensus 62 ~~~~~~gv~~~~g~~V~~Id~~~-k---~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 62 DWYEKHGITLYTGETVIQIDTDQ-K---QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHHHCCCEEEcCCeEEEEECCC-C---EEEECCCcEeeCCEEEECCCCCc
Confidence 44567899999999999998765 3 355 7788899999999999754
No 388
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=75.51 E-value=9.9 Score=39.29 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||.+|..||.. ++|.+|+|+|+ +.+||.|-.
T Consensus 9 G~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n 40 (452)
T TIGR03452 9 GTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLN 40 (452)
T ss_pred CCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeec
Confidence 899999998754 47999999998 458998853
No 389
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.47 E-value=2.5 Score=40.67 Aligned_cols=28 Identities=39% Similarity=0.418 Sum_probs=26.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|+|..|..-|..|+++|++|+++|.++.
T Consensus 12 GaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 12 GAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 8999999999999999999999998764
No 390
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.75 E-value=2.9 Score=40.81 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|..-|..++.+|++|+++|..+
T Consensus 14 GaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 14 GSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 899999999999999999999999865
No 391
>KOG1335|consensus
Probab=74.61 E-value=13 Score=36.69 Aligned_cols=34 Identities=38% Similarity=0.611 Sum_probs=32.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|+|++|-.||...++.|.+.+++|++..+||.|-
T Consensus 46 G~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 46 GGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred CCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 8999999999999999999999999999999884
No 392
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=74.09 E-value=11 Score=37.80 Aligned_cols=29 Identities=41% Similarity=0.515 Sum_probs=26.9
Q ss_pred CCChhHHHHHHHH--HHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYL--ARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~L--a~~G~~V~vlE~~~~~ 29 (523)
|||++||++|+.| ++.|.+|+|+|++...
T Consensus 6 GaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 6 GAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 8999999999999 7789999999998765
No 393
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=74.03 E-value=3.5 Score=42.87 Aligned_cols=30 Identities=27% Similarity=0.215 Sum_probs=28.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG 30 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G 30 (523)
|||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 181 GgG~iG~E~A~~l~~~G~~Vtlv~~~~~il 210 (471)
T PRK06467 181 GGGIIGLEMGTVYHRLGSEVDVVEMFDQVI 210 (471)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 899999999999999999999999988764
No 394
>PRK07538 hypothetical protein; Provisional
Probab=73.45 E-value=16 Score=37.26 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=27.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|||++||++|+.|+++|++|+|+||++.+
T Consensus 7 GaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 7 GGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 89999999999999999999999998754
No 395
>PRK12831 putative oxidoreductase; Provisional
Probab=73.19 E-value=10 Score=39.25 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=35.1
Q ss_pred HHHHCCcEEEeCceeeEEEECCCCCeEEEE-e------------------CCe--EEEcCEEEEcCChH
Q psy893 239 SAQASGAQLFTSQTVTEITLDSDKRASGVV-T------------------NGL--EIKAKYVLSNTTAK 286 (523)
Q Consensus 239 ~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~------------------~g~--~~~ad~vI~a~~~~ 286 (523)
.+++.|++|++++.+.+|..++++++.+|+ . +|+ ++.+|.||++++..
T Consensus 327 ~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~ 395 (464)
T PRK12831 327 HAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTS 395 (464)
T ss_pred HHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCC
Confidence 456789999999999999865436776654 2 222 57899999888754
No 396
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.07 E-value=3.6 Score=39.66 Aligned_cols=27 Identities=30% Similarity=0.188 Sum_probs=25.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|...|..|+++|++|++++++.
T Consensus 11 GaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 11 GAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 899999999999999999999999865
No 397
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=72.95 E-value=3.1 Score=42.41 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|.|..|++.|..|+++|++|+++++++.
T Consensus 10 GlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 10 GLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred CcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 8899999999999999999999998654
No 398
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=72.70 E-value=4.7 Score=36.06 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=38.2
Q ss_pred HHHHHHHHCCcEEEeCceeeEEEECCCCCe----EEE---E-eCCeEEEcCEEEEcCChH
Q psy893 235 ALARSAQASGAQLFTSQTVTEITLDSDKRA----SGV---V-TNGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 235 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~----~~v---~-~~g~~~~ad~vI~a~~~~ 286 (523)
.+.+.+...+++++++++|.+|.... +.+ ..+ . .++.++.+|+||+|++..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPES-KRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEEST-TEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccc-cccccCcccceeeccCCceEecCCeeeecCccc
Confidence 55666667789999999999998876 531 122 2 455689999999999955
No 399
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=72.30 E-value=3.3 Score=39.88 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|+|..|.+.|..|+++|++|+++|+++.
T Consensus 10 GaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 10 GSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred CccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 8999999999999999999999998663
No 400
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.04 E-value=3.7 Score=42.51 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=25.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|.|.+|+++|..|.+.|++|++.|+++
T Consensus 21 G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 21 GIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred cccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 789999999999999999999999865
No 401
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=71.94 E-value=4.3 Score=42.00 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=28.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG 31 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG 31 (523)
|+|..|+-.|..|++.|.+|+|+|+.+++..
T Consensus 176 GgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 176 GGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 8999999999999999999999999887653
No 402
>KOG0404|consensus
Probab=71.38 E-value=6.6 Score=35.52 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=47.6
Q ss_pred ecCCCH-HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhh
Q psy893 224 YPEGGM-GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDL 292 (523)
Q Consensus 224 ~~~gG~-~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~l 292 (523)
+|.|=. ..|.+.|.+..++.|.+|... .|.++..+. +...+.++.+.+.||.||+++++.+ .+|
T Consensus 63 FPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss--kpF~l~td~~~v~~~avI~atGAsA--kRl 127 (322)
T KOG0404|consen 63 FPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS--KPFKLWTDARPVTADAVILATGASA--KRL 127 (322)
T ss_pred CCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC--CCeEEEecCCceeeeeEEEecccce--eee
Confidence 454422 278999999999999888655 488888764 3344556777899999999999876 455
No 403
>PRK04148 hypothetical protein; Provisional
Probab=71.26 E-value=3.2 Score=34.53 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=24.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|.| .|.+.|..|++.|++|+.+|.++.
T Consensus 24 G~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 24 GIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred Eec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 678 888889999999999999998875
No 404
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=71.12 E-value=8 Score=37.26 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=25.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|||++||+||..|+++|.++.|+-+..
T Consensus 9 GGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 9 GGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 899999999999999999999998753
No 405
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=70.97 E-value=15 Score=35.67 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
..|.+.+.+.++..|.++.. ..|.++...+ + ...|. .+|+ ++|+.||+|++...
T Consensus 61 ~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~-~-~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 61 PELMEQMKEQAEKFGVEIVE-DEVEKVELEG-G-PFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHHhhcCeEEEE-EEEEEEeecC-c-eEEEEECCCe-EEEeEEEECcCCcc
Confidence 47899999999989998877 7788888765 3 45566 5665 99999999999876
No 406
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=70.87 E-value=11 Score=38.56 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=35.3
Q ss_pred HHHHHCCcEEEeCceeeEEEECCCCCeEEEEe--CCeEEE--cCEEEEcCChHH
Q psy893 238 RSAQASGAQLFTSQTVTEITLDSDKRASGVVT--NGLEIK--AKYVLSNTTAKC 287 (523)
Q Consensus 238 ~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~--~g~~~~--ad~vI~a~~~~~ 287 (523)
+.+.+.|+++++++.|++|..++ +.+ .+.. +++++. +|+||+|++...
T Consensus 52 ~~~~~~gv~~~~~~~V~~id~~~-~~v-~~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 52 VFIKKRGIDVKTNHEVIEVNDER-QTV-VVRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred HHHHhcCCeEEecCEEEEEECCC-CEE-EEEECCCCCEEecCCCEEEECCCCCC
Confidence 34467899999999999998765 433 2332 345677 999999999743
No 407
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=70.71 E-value=4.1 Score=39.41 Aligned_cols=27 Identities=41% Similarity=0.465 Sum_probs=25.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|...|..|+++|++|+++.++.
T Consensus 7 G~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 7 GAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 899999999999999999999999853
No 408
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=70.53 E-value=15 Score=38.06 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=34.7
Q ss_pred HHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---------CC-----------eEEEcCEEEEcCChH
Q psy893 237 ARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---------NG-----------LEIKAKYVLSNTTAK 286 (523)
Q Consensus 237 ~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---------~g-----------~~~~ad~vI~a~~~~ 286 (523)
.+.+++.|+++++++.+.+|..++++++++|+ . +| .++.+|.||++++..
T Consensus 327 ~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~ 397 (467)
T TIGR01318 327 VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQ 397 (467)
T ss_pred HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCC
Confidence 34566789999999999999765436666554 1 11 257788888887643
No 409
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=70.35 E-value=20 Score=36.06 Aligned_cols=26 Identities=42% Similarity=0.627 Sum_probs=25.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERR 26 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~ 26 (523)
|||++|++||+.|+++|++|+|+|++
T Consensus 7 GaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 7 GGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 89999999999999999999999997
No 410
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=69.52 E-value=4 Score=41.54 Aligned_cols=28 Identities=32% Similarity=0.279 Sum_probs=26.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|.|..|+..|..|+++|++|++++++..
T Consensus 7 GlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 7 GLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 8999999999999999999999998754
No 411
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.29 E-value=5 Score=41.35 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=26.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|.|-+|+++|..|+++|++|++.|..+..
T Consensus 12 G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 12 GLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 78999999999999999999999987653
No 412
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=69.18 E-value=4.8 Score=37.14 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|+|--|.+.|..|++.|++|+++|+++.
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 8999999999999999999999999874
No 413
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=69.18 E-value=5.5 Score=34.77 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=24.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|+.||..|...|.+|+++|.+.
T Consensus 27 G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 27 GAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp STSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 899999999999999999999999754
No 414
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=69.16 E-value=4.8 Score=39.03 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEcc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLER 25 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~ 25 (523)
|+|..|.+.|..|+++|++|+++.+
T Consensus 7 G~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 7 GAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEec
Confidence 8999999999999999999999987
No 415
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.69 E-value=16 Score=36.30 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=38.1
Q ss_pred ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEE--EE-eCCeEEEcCEEEEcCCh
Q psy893 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASG--VV-TNGLEIKAKYVLSNTTA 285 (523)
Q Consensus 224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~--v~-~~g~~~~ad~vI~a~~~ 285 (523)
.++--....++..++.+ -.++++++|+.|...+.+.+.. ++ .++.+++|+.+|+.++.
T Consensus 95 i~R~Ey~dY~~Waa~~l----~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~ 155 (436)
T COG3486 95 IPRREYNDYCQWAASQL----PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGT 155 (436)
T ss_pred ccHHHHHHHHHHHHhhC----CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCC
Confidence 44455566666666655 3589999999774322122222 44 67779999999998774
No 416
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=68.36 E-value=26 Score=31.96 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=46.7
Q ss_pred ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeC-------C-----eEEEcCEEEEcCChHHHH
Q psy893 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN-------G-----LEIKAKYVLSNTTAKCTL 289 (523)
Q Consensus 224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~-------g-----~~~~ad~vI~a~~~~~~~ 289 (523)
++.. .-.++..|+....+.|.+|...+.|+.|...++.++.||..+ + -.++|+.||-+++....+
T Consensus 104 ~v~d-s~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v 180 (262)
T COG1635 104 YVAD-SAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEV 180 (262)
T ss_pred EEec-HHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHH
Confidence 4444 345666677777788999999999999998872378887621 1 257888888888866543
No 417
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.33 E-value=4.6 Score=38.68 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=25.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|+|..|.+.|..|+++|++|+++|.++.
T Consensus 10 G~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 10 GAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred ccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 8999999999999999999999997653
No 418
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.31 E-value=4.8 Score=41.54 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|-+|+++|..|+++|++|++.|++.
T Consensus 12 G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 12 GLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred eeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 677799999999999999999999765
No 419
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=67.71 E-value=11 Score=40.65 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|||++||++|..|+++|++|+|+||+.
T Consensus 88 GgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 88 GGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 899999999999999999999999975
No 420
>KOG1371|consensus
Probab=67.59 E-value=4.5 Score=38.82 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|||..|-.++..|.++|++|+++|--.
T Consensus 10 gaGyiGsht~l~L~~~gy~v~~vDNl~ 36 (343)
T KOG1371|consen 10 GAGYIGSHTVLALLKRGYGVVIVDNLN 36 (343)
T ss_pred CCcceehHHHHHHHhCCCcEEEEeccc
Confidence 799999999999999999999999633
No 421
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=67.29 E-value=15 Score=40.03 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=25.2
Q ss_pred HHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE
Q psy893 236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVV 268 (523)
Q Consensus 236 l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~ 268 (523)
..+.+++.|+++++++.+.+|..++++++++|+
T Consensus 512 e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~ 544 (654)
T PRK12769 512 EVKNAREEGANFEFNVQPVALELNEQGHVCGIR 544 (654)
T ss_pred HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEE
Confidence 345677889999999999999865437776665
No 422
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=66.94 E-value=9.1 Score=42.87 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=37.2
Q ss_pred HHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 237 ARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 237 ~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
.+.+++.|++++.++.|.+|..+. . .|. .+|+++.+|++|+|++...
T Consensus 66 ~~~~~~~gI~~~~g~~V~~Id~~~-~---~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 66 EGFYEKHGIKVLVGERAITINRQE-K---VIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHHHHhCCCEEEcCCEEEEEeCCC-c---EEEECCCcEEECCEEEECCCCCc
Confidence 344557899999999999998764 2 345 6788899999999999754
No 423
>PLN02985 squalene monooxygenase
Probab=66.74 E-value=25 Score=36.99 Aligned_cols=28 Identities=39% Similarity=0.394 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|||++||++|+.|+++|++|+|+||...
T Consensus 50 GAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 50 GAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 8999999999999999999999999753
No 424
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=66.72 E-value=5.6 Score=39.29 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=24.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERR 26 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~ 26 (523)
|+|..|.+.|..|+++|++|+++++.
T Consensus 9 G~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 9 GAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 89999999999999999999999975
No 425
>PLN02785 Protein HOTHEAD
Probab=66.62 E-value=10 Score=40.51 Aligned_cols=27 Identities=41% Similarity=0.474 Sum_probs=24.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|||.+|+.+|.+|++ +++|+|||+...
T Consensus 62 G~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 62 GGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred CcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 899999999999999 599999999753
No 426
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=66.52 E-value=10 Score=40.59 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893 228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC 287 (523)
Q Consensus 228 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~ 287 (523)
-...+...-.+..+++|++++.+.+|..|..++ . .|. ..|.++.+|.+|+|++...
T Consensus 57 ~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~-k---~V~t~~g~~~~YDkLilATGS~p 113 (793)
T COG1251 57 TAEDISLNRNDWYEENGITLYTGEKVIQIDRAN-K---VVTTDAGRTVSYDKLIIATGSYP 113 (793)
T ss_pred cHHHHhccchhhHHHcCcEEEcCCeeEEeccCc-c---eEEccCCcEeecceeEEecCccc
Confidence 345666666677889999999999999999876 3 366 7888999999999988776
No 427
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=66.12 E-value=6.2 Score=37.55 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=25.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|||..|-.++..|.++|++|+|+|-..
T Consensus 8 GAGYIGSHtv~~Ll~~G~~vvV~DNL~ 34 (329)
T COG1087 8 GAGYIGSHTVRQLLKTGHEVVVLDNLS 34 (329)
T ss_pred CcchhHHHHHHHHHHCCCeEEEEecCC
Confidence 899999999999999999999999654
No 428
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=65.89 E-value=6.4 Score=38.40 Aligned_cols=27 Identities=41% Similarity=0.461 Sum_probs=25.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|.+-|..|+++|++|+++.++.
T Consensus 12 G~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 12 GTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 899999999999999999999998854
No 429
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.17 E-value=6.2 Score=41.21 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=24.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|.|.+|++++..|.+.|.+|++.|.+.
T Consensus 19 G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 19 GAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 889999999999999999999999653
No 430
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=65.09 E-value=6.2 Score=40.24 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=26.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|-|.+|++||..|.+.|.+|++.|.++.+
T Consensus 14 GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 14 GLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred ecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 67999999999999999999999987765
No 431
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.21 E-value=6.5 Score=38.27 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=25.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|.+.|..|+++|++|++++++.
T Consensus 11 GaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 11 GAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 899999999999999999999999765
No 432
>KOG1238|consensus
Probab=64.16 E-value=5.6 Score=41.86 Aligned_cols=58 Identities=24% Similarity=0.341 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHH--CCcEEEeCceeeEEEECCC-CCeEEEE--eC-CeEEEcCE---EEEcCChHHH
Q psy893 231 AVSQALARSAQA--SGAQLFTSQTVTEITLDSD-KRASGVV--TN-GLEIKAKY---VLSNTTAKCT 288 (523)
Q Consensus 231 ~l~~~l~~~~~~--~G~~i~~~~~V~~I~~~~~-~~~~~v~--~~-g~~~~ad~---vI~a~~~~~~ 288 (523)
.+.++..+.+.. .+..+..++.|+.|..+.. .++.+|. .+ |.+++... ||+++++..+
T Consensus 253 s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~S 319 (623)
T KOG1238|consen 253 SLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINS 319 (623)
T ss_pred EehhhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCC
Confidence 445556665554 2567889999999999832 5677887 56 55544433 9988887654
No 433
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=63.80 E-value=8 Score=33.53 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=23.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|-|..|...|..|+++|++|.+++++.
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred chHHHHHHHHHHHHhcCCeEEeeccch
Confidence 679999999999999999999999864
No 434
>KOG0404|consensus
Probab=63.77 E-value=11 Score=34.22 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=30.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccC----CCCCcceeeec
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERR----HVLGGAAVTEE 37 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~----~~~GG~~~s~~ 37 (523)
|+|+++-+||.+++++-.+-+|+|-- --+||-+.+..
T Consensus 15 GSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 15 GSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred ccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 89999999999999999999999963 23578776554
No 435
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=63.32 E-value=7.5 Score=37.77 Aligned_cols=26 Identities=46% Similarity=0.547 Sum_probs=24.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERR 26 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~ 26 (523)
|+|..|...|++|+++|++|+++.|.
T Consensus 9 GaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 9 GAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 88999999999999999999999985
No 436
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=62.96 E-value=22 Score=40.73 Aligned_cols=35 Identities=34% Similarity=0.516 Sum_probs=33.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||++||+||..|+++|++|+|+|+++.+||.+..
T Consensus 170 GaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 170 GAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 89999999999999999999999999999998753
No 437
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=62.91 E-value=7.6 Score=38.13 Aligned_cols=27 Identities=33% Similarity=0.387 Sum_probs=25.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|.+.|..|+++|++|++++++.
T Consensus 11 G~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 11 GAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 899999999999999999999999854
No 438
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.53 E-value=7.2 Score=40.47 Aligned_cols=28 Identities=14% Similarity=-0.054 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|.|.+|.+||..|.+.|.+|++.|.++.
T Consensus 15 G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 15 GWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred ccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 7899999999999999999999997654
No 439
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.43 E-value=7.1 Score=40.94 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=24.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|.|.+|+++|..|.+.|++|.+.|.+.
T Consensus 14 G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 14 GLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred eecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 789999999999999999999999765
No 440
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=62.34 E-value=5.9 Score=37.37 Aligned_cols=33 Identities=55% Similarity=0.850 Sum_probs=30.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 33 (523)
|||++||+||+.|+++|++|+|+||+..+||.+
T Consensus 32 GgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 32 GAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred CccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 899999999999999999999999999888754
No 441
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=62.09 E-value=8 Score=41.86 Aligned_cols=31 Identities=23% Similarity=0.102 Sum_probs=28.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG 31 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG 31 (523)
|||..|+-.|..|++.|.+|+|+|+.+++..
T Consensus 319 GgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 319 GMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 8999999999999999999999999887653
No 442
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=62.08 E-value=8.3 Score=37.23 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=25.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|...|..|+++|++|+++|++.
T Consensus 11 G~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 11 GAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 899999999999999999999999865
No 443
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.62 E-value=4.1 Score=39.38 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=24.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGA 32 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~ 32 (523)
|||++|-+||.+.||+|.+.=|+- +++||-
T Consensus 218 GgGPAgaaAAiYaARKGiRTGl~a--erfGGQ 247 (520)
T COG3634 218 GGGPAGAAAAIYAARKGIRTGLVA--ERFGGQ 247 (520)
T ss_pred cCCcchhHHHHHHHhhcchhhhhh--hhhCCe
Confidence 899999999999999998876552 356664
No 444
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=61.21 E-value=27 Score=35.99 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCC--cEEEeCceeeEEEECCCCCeEEEE-eCCeE--EEcCEEEEcCChHH
Q psy893 232 VSQALARSAQASG--AQLFTSQTVTEITLDSDKRASGVV-TNGLE--IKAKYVLSNTTAKC 287 (523)
Q Consensus 232 l~~~l~~~~~~~G--~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~--~~ad~vI~a~~~~~ 287 (523)
+-+-+.+++++.+ -+|+.++.|+.+..+.+++.+.|+ .+|.+ ++||.||+|++...
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLS 144 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCC
Confidence 5555666666666 577888999888887756667777 55544 56999999999743
No 445
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=60.93 E-value=7.3 Score=39.26 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=24.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|.|..|+..|..|+. |++|+++|.+..
T Consensus 7 GlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 7 GTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred CCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 899999999988885 999999998764
No 446
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=60.86 E-value=8 Score=40.00 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=36.9
Q ss_pred HHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893 234 QALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK 286 (523)
Q Consensus 234 ~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~ 286 (523)
..|.+.++... ..| ....|+.|..+++.++++|. .+|..+.|+.||+|++-.
T Consensus 104 ~~mk~~le~~~NL~l-~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 104 RAMKNELENQPNLHL-LQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred HHHHHHHhcCCCcee-hHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 44555555543 343 45567888886623588999 899999999999998854
No 447
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=60.45 E-value=6.6 Score=36.98 Aligned_cols=33 Identities=52% Similarity=0.824 Sum_probs=31.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 33 (523)
|||++||+||+.|+++|.+|+|+||+..+||.+
T Consensus 28 GgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 28 GAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 899999999999999999999999999988754
No 448
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=60.32 E-value=7.9 Score=40.51 Aligned_cols=27 Identities=33% Similarity=0.292 Sum_probs=25.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|.+-|..|+++|++|+|+++++
T Consensus 11 G~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 11 GGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 899999999999999999999999864
No 449
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=60.08 E-value=7.8 Score=40.62 Aligned_cols=28 Identities=32% Similarity=0.295 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|+|..|...|..|+++|++|+|+|++..
T Consensus 14 GaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 14 GAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 8999999999999999999999998754
No 450
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=59.61 E-value=8 Score=40.43 Aligned_cols=28 Identities=32% Similarity=0.254 Sum_probs=25.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|+|..|...|..|+++|++|+|+|+++.
T Consensus 12 GaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 12 GAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 8999999999999999999999998743
No 451
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=59.25 E-value=13 Score=39.60 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=28.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 33 (523)
|||++|+.||..|++.|.+|+|+|++...+|.+
T Consensus 7 GaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 7 GGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 899999999999999999999999985544443
No 452
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=58.90 E-value=6.8 Score=41.80 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893 7 LVSAAYLARAGLSVAVLERRHVLGGA 32 (523)
Q Consensus 7 L~aA~~La~~G~~V~vlE~~~~~GG~ 32 (523)
|+||..++++|.+|+|+||....||.
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~ 26 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSH 26 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCch
Confidence 68999999999999999999876664
No 453
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=58.87 E-value=10 Score=36.91 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=25.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|.+.|..|+++|++|.++.++.
T Consensus 11 G~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 11 GAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 899999999999999999999999865
No 454
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.83 E-value=9.1 Score=39.49 Aligned_cols=27 Identities=37% Similarity=0.690 Sum_probs=24.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|.|-+|+++|..|.+.|++|++.|.+.
T Consensus 13 G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 13 GLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred eecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 678999999999999999999999765
No 455
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=58.65 E-value=7 Score=40.39 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=27.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 34 (523)
|||.+|+-||+..||.|.+++++=-+-.-=|.++
T Consensus 11 GgGHAG~EAA~AaARmG~ktlLlT~~~dtig~ms 44 (621)
T COG0445 11 GGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMS 44 (621)
T ss_pred CCCccchHHHHhhhccCCeEEEEEcCCCceeecc
Confidence 8999999999999999999999887643223443
No 456
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=58.49 E-value=11 Score=39.83 Aligned_cols=27 Identities=52% Similarity=0.561 Sum_probs=25.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|.+|.+.|.+|++.|++|+|||+..
T Consensus 14 GsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 14 GSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999999999863
No 457
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=58.15 E-value=8.2 Score=39.99 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=25.0
Q ss_pred CCChhHHH-HHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLV-SAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~-aA~~La~~G~~V~vlE~~~~ 28 (523)
|.|-+|++ +|..|+++|++|++.|.+..
T Consensus 14 G~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 14 GIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred EEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 67899999 59999999999999998664
No 458
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=57.98 E-value=10 Score=37.17 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=25.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|.-|.+-|..|+++|++|+++.++.
T Consensus 7 GaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 7 GAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 899999999999999999999999854
No 459
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=57.84 E-value=9.9 Score=33.25 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHcCCcEEE
Q psy893 4 HNGLVSAAYLARAGLSVAV 22 (523)
Q Consensus 4 ~~GL~aA~~La~~G~~V~v 22 (523)
-=||++|.+|+++|++|.|
T Consensus 39 gDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 39 GDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 3479999999999999999
No 460
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=57.55 E-value=12 Score=32.70 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=22.9
Q ss_pred CCC-hhHHHHHHHHHHcCCcEEEEccC
Q psy893 1 EAG-HNGLVSAAYLARAGLSVAVLERR 26 (523)
Q Consensus 1 GaG-~~GL~aA~~La~~G~~V~vlE~~ 26 (523)
|+| +.|..+|.+|.+.|.+|+|+.++
T Consensus 51 G~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 51 GRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 677 57999999999999999999985
No 461
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.55 E-value=10 Score=39.45 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=25.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|.|.+|+++|..|.+.|++|++.|+..
T Consensus 22 G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 22 GAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 889999999999999999999999754
No 462
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=57.52 E-value=12 Score=36.28 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=24.6
Q ss_pred CCChhHHHHHHHHHHcCC-cEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGL-SVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~-~V~vlE~~~ 27 (523)
|+|..|.+.|+.|+.+|+ +|+++|..+
T Consensus 8 GaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 8 GAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 899999999999999887 899999844
No 463
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=57.50 E-value=11 Score=36.91 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=25.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|...|..|+++|++|++++++.
T Consensus 8 G~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 8 GAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 899999999999999999999999864
No 464
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=57.42 E-value=57 Score=35.37 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHH-cCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLAR-AGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~-~G~~V~vlE~~~~ 28 (523)
|||++||++|..|++ .|.+|+|+||++.
T Consensus 39 GAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 39 GCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 899999999999999 5999999999764
No 465
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=57.31 E-value=11 Score=36.60 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCChhHHHHHHHHHHcC--CcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAG--LSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G--~~V~vlE~~~ 27 (523)
|+|..|.++|+.|+.+| .+|+++|++.
T Consensus 7 GaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 7 GAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 89999999999999999 5899999865
No 466
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=57.21 E-value=9.8 Score=40.51 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=26.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|||..|+-.|..|++.|.+|+++++.+.+
T Consensus 150 GgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 150 GGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 89999999999999999999999998754
No 467
>KOG1336|consensus
Probab=57.02 E-value=14 Score=37.40 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893 233 SQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA 285 (523)
Q Consensus 233 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~ 285 (523)
.....+..++.|.++++++.|+.+.... . .|. .+|+++.++++|+|++.
T Consensus 130 a~r~~e~Yke~gIe~~~~t~v~~~D~~~-K---~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 130 AKRTPEFYKEKGIELILGTSVVKADLAS-K---TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred cccChhhHhhcCceEEEcceeEEeeccc-c---EEEeCCCceeecceEEEeecC
Confidence 3444567778999999999999999986 3 366 88999999999999887
No 468
>PRK13984 putative oxidoreductase; Provisional
Probab=56.94 E-value=25 Score=37.84 Aligned_cols=46 Identities=15% Similarity=0.355 Sum_probs=32.7
Q ss_pred HHHCCcEEEeCceeeEEEECCCCCeEEEE-e--------CC-----------eEEEcCEEEEcCChH
Q psy893 240 AQASGAQLFTSQTVTEITLDSDKRASGVV-T--------NG-----------LEIKAKYVLSNTTAK 286 (523)
Q Consensus 240 ~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--------~g-----------~~~~ad~vI~a~~~~ 286 (523)
+.+.|+++++++.+.+|..++ +++++|+ . +| .++.+|.||++++..
T Consensus 472 ~~~~GV~i~~~~~~~~i~~~~-g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~ 537 (604)
T PRK13984 472 GLEEGVVIYPGWGPMEVVIEN-DKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA 537 (604)
T ss_pred HHHcCCEEEeCCCCEEEEccC-CEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC
Confidence 346799999999998887655 7776664 2 11 357888888887654
No 469
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.46 E-value=9.6 Score=39.47 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=24.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERR 26 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~ 26 (523)
|.|-+|+++|.+|.+.|++|.+.|..
T Consensus 16 G~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 16 GLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred eecHhHHHHHHHHHHCCCEEEEECCC
Confidence 77999999999999999999999965
No 470
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=56.21 E-value=10 Score=39.26 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=24.8
Q ss_pred CCChhHHHHHHHHHHcC--CcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAG--LSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G--~~V~vlE~~~~ 28 (523)
|+|..||..|..||++| ++|+.+|.+..
T Consensus 8 G~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 8 GAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 89999999999999985 78999998653
No 471
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=56.07 E-value=12 Score=38.19 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=17.1
Q ss_pred CCCCeEecCCCCCCCCCCCCc-cHHHHH
Q psy893 488 LIPHLLLCGSGAHPGGGVCGA-PGYIAA 514 (523)
Q Consensus 488 ~i~~LylaG~~~~pg~g~~~a-sG~~aA 514 (523)
.++||||||+-+..-|....| +|..|+
T Consensus 328 ~~~~lf~AGQi~G~~GY~Eaaa~Gl~ag 355 (433)
T TIGR00137 328 DRQTLFFAGQLTGVEGYVASTAGGWLAG 355 (433)
T ss_pred CCCCEEECcccccchHHHHHHHHHHHHH
Confidence 589999999997443334333 444444
No 472
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=55.44 E-value=32 Score=38.24 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=34.7
Q ss_pred HHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---------CC-----------eEEEcCEEEEcCChH
Q psy893 238 RSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---------NG-----------LEIKAKYVLSNTTAK 286 (523)
Q Consensus 238 ~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---------~g-----------~~~~ad~vI~a~~~~ 286 (523)
+.+++.|+++++++.+.+|..++++++++|+ . +| .++.+|.||++++..
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~ 685 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS 685 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCC
Confidence 3466789999999999999765436666654 2 12 257888888887744
No 473
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.01 E-value=12 Score=38.40 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=25.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|-|-+|++++..|++.|++|++.|....
T Consensus 13 G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 13 GLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred eeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 6789999999999999999999997653
No 474
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=54.63 E-value=14 Score=33.23 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|.|-.|..+|..|.+.|++|++.|++.
T Consensus 35 G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 35 GLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 778999999999999999999999764
No 475
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=54.23 E-value=5.5 Score=38.26 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--------CCe----------EEEcCEEEEcCC
Q psy893 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--------NGL----------EIKAKYVLSNTT 284 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--------~g~----------~~~ad~vI~a~~ 284 (523)
.-+++.+.+..++.-+++++..+|..+...+ +++++|+ . .|+ +++|..||++.+
T Consensus 153 ~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~-grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SG 225 (552)
T COG3573 153 EPFVRRLREAQRRGRVTFRFRHRVDGLTTTG-GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASG 225 (552)
T ss_pred hHHHHHHHHHHhCCceEEEeeeeccceEeeC-CeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecC
Confidence 3444444444433338999999999999998 9999886 1 111 467888888765
No 476
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=54.12 E-value=13 Score=36.88 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=19.1
Q ss_pred CCChhHHHHHHHHHHcCCc-EEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLS-VAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~-V~vlE~~~ 27 (523)
|+|..|+-+|..|++.|.+ |+|+++.+
T Consensus 179 G~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 179 GAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 6777777777777777765 77776543
No 477
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=53.15 E-value=9.7 Score=37.64 Aligned_cols=28 Identities=39% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCChhHHHHHHHHHHcC-CcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAG-LSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G-~~V~vlE~~~~ 28 (523)
|.|+++|+.|+.|...+ .+++.|||++.
T Consensus 9 G~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 9 GFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp --SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred eeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 89999999999999876 89999999775
No 478
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=53.05 E-value=29 Score=35.57 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=25.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~ 29 (523)
|+|++||++|..|++. ++|+|+-|...-
T Consensus 14 GsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 14 GSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred CCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 8999999999999988 999999998763
No 479
>KOG0405|consensus
Probab=53.02 E-value=38 Score=33.11 Aligned_cols=35 Identities=37% Similarity=0.461 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 35 (523)
|||-+|+++|.+.+..|.+|.|+|..-.+||.|-.
T Consensus 27 GgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 27 GGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred cCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 89999999999999999999999998889998853
No 480
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=52.90 E-value=15 Score=30.87 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=24.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|+|..+.+.|..++.-|++|+|+|-++.
T Consensus 5 GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 5 GAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp S-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred eCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 8999999999999999999999998753
No 481
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=52.86 E-value=12 Score=38.32 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=25.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|-|-+|+++|..|.++|++|++.|....
T Consensus 6 G~G~~G~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 6 GLGKTGRAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred EeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence 6788999999999999999999997654
No 482
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=52.73 E-value=47 Score=30.29 Aligned_cols=63 Identities=32% Similarity=0.545 Sum_probs=42.3
Q ss_pred ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e------CC-----eEEEcCEEEEcCChHH
Q psy893 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T------NG-----LEIKAKYVLSNTTAKC 287 (523)
Q Consensus 224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~------~g-----~~~~ad~vI~a~~~~~ 287 (523)
|..... .++..|.....+.|++|...+.|+.+...+++++.||. + .| -.++|+.||-+++...
T Consensus 91 ~v~d~~-~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 91 YVADSV-EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp EES-HH-HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred EEEcHH-HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 444544 55555555555699999999999999877646888886 2 22 2789999999987654
No 483
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=52.71 E-value=38 Score=36.75 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=33.6
Q ss_pred HHHCCcEEEeCceeeEEEECCCCCeEEEE----e------CC-----------eEEEcCEEEEcCCh
Q psy893 240 AQASGAQLFTSQTVTEITLDSDKRASGVV----T------NG-----------LEIKAKYVLSNTTA 285 (523)
Q Consensus 240 ~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~------~g-----------~~~~ad~vI~a~~~ 285 (523)
+++.|+++++++.+.+|..++++++++|+ . +| .++.+|.||++++.
T Consensus 499 a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~ 565 (639)
T PRK12809 499 AREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGF 565 (639)
T ss_pred HHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCC
Confidence 45779999999999999865436676653 1 12 25788999888874
No 484
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=52.11 E-value=68 Score=32.45 Aligned_cols=30 Identities=33% Similarity=0.413 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG 30 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G 30 (523)
|||++|++||+.|+++|++|+|+||+...+
T Consensus 7 GaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 7 GGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 899999999999999999999999986544
No 485
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=51.90 E-value=12 Score=35.90 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=25.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|.|..|...|..|++.|++|++++++.
T Consensus 6 G~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 6 GLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred EecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 789999999999999999999999864
No 486
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=51.83 E-value=15 Score=33.61 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 2 AGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 2 aG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
+|..|.+.|..|+++|++|+++.+++
T Consensus 9 ~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 9 TGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 69999999999999999999987643
No 487
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=51.75 E-value=15 Score=36.72 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|+|..|+.+|..|.+.|.+|++++++.
T Consensus 174 GaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 174 GGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 899999999999999999999999864
No 488
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.67 E-value=12 Score=38.59 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|.|.+|.+||..|. +|.+|+|.|.+.
T Consensus 13 G~G~sG~a~~~~L~-~g~~v~v~D~~~ 38 (454)
T PRK01368 13 GLGKTGISVYEELQ-NKYDVIVYDDLK 38 (454)
T ss_pred eecHHHHHHHHHHh-CCCEEEEECCCC
Confidence 78999999999999 499999999653
No 489
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=51.58 E-value=13 Score=38.45 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=25.2
Q ss_pred CCChhHHH-HHHHHHHcCCcEEEEccCCCC
Q psy893 1 EAGHNGLV-SAAYLARAGLSVAVLERRHVL 29 (523)
Q Consensus 1 GaG~~GL~-aA~~La~~G~~V~vlE~~~~~ 29 (523)
|.|-+|++ +|..|++.|++|++.|.....
T Consensus 6 GiggsGm~~la~~L~~~G~~v~~~D~~~~~ 35 (448)
T TIGR01082 6 GIGGIGMSGIAEILLNRGYQVSGSDIAENA 35 (448)
T ss_pred EECHHHHHHHHHHHHHCCCeEEEECCCcch
Confidence 67889998 899999999999999976643
No 490
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=51.13 E-value=13 Score=40.96 Aligned_cols=28 Identities=25% Similarity=0.122 Sum_probs=26.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|||..|...|..++.+|++|+++|.++.
T Consensus 320 GaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 320 GAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred CCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 8999999999999999999999998753
No 491
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=51.06 E-value=38 Score=35.81 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHCC--cEEEeCceeeEEEECCCC---CeEEEE--eCCe--EEEcCEEEEcCChHH
Q psy893 230 GAVSQALARSAQASG--AQLFTSQTVTEITLDSDK---RASGVV--TNGL--EIKAKYVLSNTTAKC 287 (523)
Q Consensus 230 ~~l~~~l~~~~~~~G--~~i~~~~~V~~I~~~~~~---~~~~v~--~~g~--~~~ad~vI~a~~~~~ 287 (523)
..+.+-|..+++..+ -.|++|++|++|+..++. ..+.|+ .+|+ +-.+|+||+|++...
T Consensus 84 ~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 84 SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence 467777777777766 479999999999986421 234455 4554 346899999988654
No 492
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=50.68 E-value=15 Score=35.29 Aligned_cols=27 Identities=33% Similarity=0.291 Sum_probs=25.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|.|..|...|..|+++|++|++++++.
T Consensus 3 GlG~mG~~mA~~L~~~G~~V~v~dr~~ 29 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHPVRVFDLFP 29 (288)
T ss_pred cccHhHHHHHHHHHhCCCeEEEEeCCH
Confidence 789999999999999999999999864
No 493
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=50.43 E-value=43 Score=38.52 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=37.0
Q ss_pred HHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e-----------------CC--eEEEcCEEEEcCChH
Q psy893 238 RSAQASGAQLFTSQTVTEITLDSDKRASGVV-T-----------------NG--LEIKAKYVLSNTTAK 286 (523)
Q Consensus 238 ~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~-----------------~g--~~~~ad~vI~a~~~~ 286 (523)
+.+++.|+++++++.+.+|..+++|++++|+ . +| .++.+|.||++++..
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~ 685 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK 685 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC
Confidence 4566789999999999999865447777764 2 12 258999999999854
No 494
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=49.97 E-value=22 Score=29.61 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=24.1
Q ss_pred CCChhHHHHHHHHHHcCCc-EEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLS-VAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~-V~vlE~~~ 27 (523)
|+|-+|-++++.|++.|.+ |+|+-|+.
T Consensus 19 GaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 19 GAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp SSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 8999999999999999986 99998864
No 495
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=49.74 E-value=25 Score=34.74 Aligned_cols=47 Identities=28% Similarity=0.242 Sum_probs=29.7
Q ss_pred HHHHCCcEEEeCceeeEEEECCCC--CeEEEEe-----CCeEEEcCEEEEcCCh
Q psy893 239 SAQASGAQLFTSQTVTEITLDSDK--RASGVVT-----NGLEIKAKYVLSNTTA 285 (523)
Q Consensus 239 ~~~~~G~~i~~~~~V~~I~~~~~~--~~~~v~~-----~g~~~~ad~vI~a~~~ 285 (523)
.+++.+..++++++|++|....++ ....|+. +++++.|++||++++.
T Consensus 104 va~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 104 VAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp HHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred HHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 333445559999999999987622 2345552 3468999999999883
No 496
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=49.44 E-value=16 Score=35.33 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=25.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|.|..|.+.|..|+++|++|++++++.
T Consensus 8 GlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 8 GLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 789999999999999999999999865
No 497
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=49.14 E-value=84 Score=32.42 Aligned_cols=27 Identities=30% Similarity=0.526 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|||++|++||+.|+++|++|+|+||+.
T Consensus 46 GaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 46 GGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 899999999999999999999999975
No 498
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=48.99 E-value=16 Score=40.07 Aligned_cols=28 Identities=21% Similarity=0.089 Sum_probs=26.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRHV 28 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~~ 28 (523)
|||..|-..|..++.+|++|+++|.+..
T Consensus 320 GaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 320 GAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred CCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 8999999999999999999999998753
No 499
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=48.84 E-value=14 Score=35.32 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=29.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccC--------CCCCcceee
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERR--------HVLGGAAVT 35 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~--------~~~GG~~~s 35 (523)
|+|..|.-||..+.--|-+|+|+|.+ +..||+..+
T Consensus 175 GGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~ 217 (371)
T COG0686 175 GGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHT 217 (371)
T ss_pred CCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEE
Confidence 89999999999999899999999998 346666554
No 500
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=48.68 E-value=16 Score=34.83 Aligned_cols=27 Identities=26% Similarity=0.167 Sum_probs=24.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893 1 EAGHNGLVSAAYLARAGLSVAVLERRH 27 (523)
Q Consensus 1 GaG~~GL~aA~~La~~G~~V~vlE~~~ 27 (523)
|.|..|.+.|..|+++|++|++++++.
T Consensus 7 G~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 7 GLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 789999999999999999999999754
Done!