RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy893
(523 letters)
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 288 bits (739), Expect = 9e-92
Identities = 144/529 (27%), Positives = 206/529 (38%), Gaps = 64/529 (12%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP-HIYK 60
AG NGL +AA LARAGL V VLE+ +GG A T E + GF+F + P +++
Sbjct: 11 AGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDPGPLFR 69
Query: 61 DLE-LKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFE 119
+L L GL LL DP L + + D + E + D +
Sbjct: 70 ELGNLDADGLDLLPPDPAYRVFLPDGDA------IDVYTDLEATAELLESLEPGDGEALA 123
Query: 120 KY-----DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILN 174
+Y + LL P SA
Sbjct: 124 RYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLT---------SALDFFR 174
Query: 175 DWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQ 234
F SE L+A L + G P S + LL +G + G YP GGMGA+
Sbjct: 175 GRFGSELLRALLAYSAVYGGA--PPSTPPALYLLLSHLGLSGG----VFYPRGGMGALVD 228
Query: 235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIP 294
ALA A+ G ++ T V++I ++ K ++G I+A V+SN LL +
Sbjct: 229 ALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP--ALLARLL 286
Query: 295 KGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDM 354
R + A + + HH +I L
Sbjct: 287 GEARRPRYRGSYLKSLSA---------------LSLYLGLKGDLLPLAHHTTILLGD-TR 330
Query: 355 QQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTE 414
+Q+ +A+ D P + + +PS D +L+P G H F +
Sbjct: 331 EQIEEAFDDRAGRPPP----LYVSIPSLTDPSLAPEGKHST-----FAQLVPVPSLGDYD 381
Query: 415 EDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFN 474
E K + A + ++E+ PG IV E+LTP DLE+ GL GG+IF GA +L+QL
Sbjct: 382 ELKESLADAI-DALEELAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPF 440
Query: 475 RPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK 523
RP P T I L L G+ HPGGGV G PG AA + +
Sbjct: 441 RPPP------KSTPIKGLYLVGASTHPGGGVPGVPGS-AAAVALLIDLD 482
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to
lycopene by desaturation at four (two symmetrical pairs
of) sites. This is achieved by two enzymes (crtP and
crtQ) in cyanobacteria (Gloeobacter being an exception)
and plants, but by a single enzyme in most other
bacteria and in fungi. This single enzyme is called the
bacterial-type phytoene desaturase, or CrtI. Most
members of this family, part of the larger Pfam family
pfam01593, which also contains amino oxidases, are CrtI
itself; it is likely that all members act on either
phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 114 bits (287), Expect = 3e-27
Identities = 126/544 (23%), Positives = 198/544 (36%), Gaps = 83/544 (15%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
AG GL A LA AG+ V V+E+R GG A E GF+F P +
Sbjct: 6 AGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED-DGFRFD--------TGPTVITM 56
Query: 62 LELKKHGLKLLTRDPRSYTPL----------SPDKWTNKAKSLTLGLDPQKNYEQIARFS 111
E + L RD Y L D L + D ++ QIARF+
Sbjct: 57 PEALEELFALAGRDLADYVELVPLDPFYRLCWED-----GSQLDVDNDQEELEAQIARFN 111
Query: 112 VKDAQNFEKYDHHIEEITNL-LDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAF 170
D + ++ + E + L + +LL +L + L S +
Sbjct: 112 PGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQL------LALLAWRSLY 165
Query: 171 SILNDWFESEPLKATLLTDGL-IGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGM 229
S + +F E L+ L +G +P + Y L+ + E G W +P GG
Sbjct: 166 SKVARFFSDERLRQAFSFHALFLG--GNPFRTPSIYALISAL----EREWGVW-FPRGGT 218
Query: 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTL 289
GA+ A+A+ A+ G +L + V I + + + + +G + A V+SN T
Sbjct: 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTY 278
Query: 290 LDLIPKGNLDERTTQAVQSIDYASPVT-----KINVALKSIPNFLADPNPSENTVQPHHH 344
L+P + SP + P HH
Sbjct: 279 RRLLPNHPRRRYPAARLSRKRP-SPSLFVLYFGLLGVDGHWPQL------------AHH- 324
Query: 345 GSIHLNC---EDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQF 401
++ E ++F G + P + + P+ D +L+PPG L+
Sbjct: 325 -TLCFGPRYKELFDEIFRK------GRLAEDPSLYLHRPTVTDPSLAPPGCE--NLYVLA 375
Query: 402 -TPYKLAGDRDWTEEDKANYATNVFSSIEQ-YCPGFTQDIVGYEILTPPDLEKEFGLTGG 459
P+ D DW+ E Y + + +E+ PG IV TP D + G
Sbjct: 376 PVPHLGTADVDWSVE-GPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLG 434
Query: 460 NIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPG-YIAAQMVN 518
+ F +L Q + R P + I +L L G+G HPG GV PG +A+
Sbjct: 435 SAFSLEHTLTQSAWFR------PHNRDRKIDNLYLVGAGTHPGAGV---PGVLGSAKATA 485
Query: 519 RLMR 522
+LM
Sbjct: 486 KLML 489
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 68.0 bits (166), Expect = 4e-12
Identities = 62/325 (19%), Positives = 103/325 (31%), Gaps = 34/325 (10%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSR-ASYLLSLLRPHIYKDLEL 64
GL +A L RAG V VLE R +GG T GF A + +L L
Sbjct: 3 GLAAARELLRAGFDVTVLEARDRVGGRIRTVR-FDGFLIELGAQWFHG--AYPNLLNLLL 59
Query: 65 KKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHH 124
+ L P P K+ L D + R ++ + E+
Sbjct: 60 ELGLELGLLLFPFPGDPFVRLKYRGGPY-PDLPGDLPPPLFLLLRSLLELELSLEEPIR- 117
Query: 125 IEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKA 184
LL + + ++ LL+ + F L L
Sbjct: 118 ---RALLLLVALLLLAPEL----------LELDLLSFSDLLSAAGFLELFLLLFRSLLAG 164
Query: 185 TLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASG 244
L L + S L GG G + +G + Q +A + G
Sbjct: 165 ALGFLPLELSA---RLALLSLRLFDLEDGGVVFPGGGF---TLPLGGLPQLIAAALGLLG 218
Query: 245 AQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNT---TAKCTLLDLIPKGNLDER 301
++ + V IT D + +G I+A V+ K L P L
Sbjct: 219 GRVRLNTRVRSITKSGDG-VTVTTVDGRTIEADAVIVTVPLGVLKRILFL--PP--LPAA 273
Query: 302 TTQAVQSIDYASPVTKINVALKSIP 326
+A++++ + S V+K+ + ++
Sbjct: 274 KQEAIRNLGFGS-VSKVFLEFETPF 297
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family,
including sll0033 (crtH) of Synechocystis sp. PCC 6803,
catalyze a cis-trans isomerization of carotenes to the
all-trans lycopene, a reaction that can also occur
non-enzymatically in light through photoisomerization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 493
Score = 67.9 bits (166), Expect = 5e-12
Identities = 74/294 (25%), Positives = 116/294 (39%), Gaps = 46/294 (15%)
Query: 220 GAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGV-VTNGLEIKAKY 278
G YP+GG+G ++++L + + G Q+ VT+I L++ K A GV + +G +I AK
Sbjct: 219 GGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGK-AVGVKLADGEKIYAKR 277
Query: 279 VLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENT 338
++SN T T L+ NL ++ + P+FL+ +
Sbjct: 278 IVSNATRWDTFGKLLKAENLPKKEKNWQR-------------NYVKSPSFLSLHLGVKAD 324
Query: 339 VQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLF 398
V P H+ ED + I + +P+ LD +L+P GHH+
Sbjct: 325 VLPPGTECHHILLEDWTNLEKPQG-----------TIFVSIPTLLDPSLAPEGHHI---I 370
Query: 399 TQFTPYKLAGDRDWT-------EEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLE 451
FTP + DW E K A + +E+ PG I E+ TP
Sbjct: 371 HTFTPSSM---EDWQGLSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHR 427
Query: 452 KEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGV 505
+ G G +G + L P+P T IP L G PG G+
Sbjct: 428 RFLGRDSGT--YGPIPRRTLPGLLPMPFNR-----TAIPGLYCVGDSCFPGQGL 474
Score = 30.2 bits (68), Expect = 2.8
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33
+G GLV+A LA G V VLER + GG+A
Sbjct: 8 SGIGGLVTATQLAVKGAKVLVLERYLIPGGSA 39
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 50.5 bits (122), Expect = 2e-08
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQF 44
AG +GLV+A LA+ G V VLE+R +GG A +E PG++
Sbjct: 4 AGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSER-DPGYRH 45
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 50.4 bits (121), Expect = 2e-06
Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
AG GL +A +LARAG V V ER GG V + IIP F+ I D
Sbjct: 547 AGPAGLAAAYFLARAGHPVTVFEREENAGG--VVKNIIPQFRIPAEL---------IQHD 595
Query: 62 LEL-KKHGLKLLTRDPRSYTP 81
+E K HG+K T
Sbjct: 596 IEFVKAHGVKFEFGCSPDLTV 616
>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp. strain
PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria, where
myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed to
myxoxanthophyll [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 492
Score = 49.3 bits (118), Expect = 3e-06
Identities = 69/327 (21%), Positives = 111/327 (33%), Gaps = 68/327 (20%)
Query: 211 VMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN 270
V+ A+ G W + G M +S L + + G L T Q VT I + VV +
Sbjct: 214 VLQMAQAPHGLW-HLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVD 272
Query: 271 G-----LEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSI 325
L +KA V++N + LL+L+ L + ++ + S + +K
Sbjct: 273 SRKQEDLNVKADDVVANLPPQS-LLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRA 331
Query: 326 PNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDN 385
++ ++C Q +Q SL
Sbjct: 332 --------------------ALPVDCPPHLQFLSDHQ------------------GSLFV 353
Query: 386 TLSPPGHH---------VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT 436
++S G + FT + + D+T + K Y + + Y
Sbjct: 354 SISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAK-KKQYTQTIIERLGHYFDLLE 412
Query: 437 QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPS--SPFTLIPHLLL 494
++ V E+ TP E+ G G + G L F GP S T + L L
Sbjct: 413 ENWVHVELATPRTFERWTGRPQGIV--GGLGQRPSTF-------GPFGLSSRTPVKGLWL 463
Query: 495 CGSGAHPGGGVCGAPGYIAAQMVNRLM 521
CG HPG G G +A MV R +
Sbjct: 464 CGDSIHPGEGTAGVS--YSALMVVRQI 488
Score = 38.2 bits (89), Expect = 0.010
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASY 49
AG GL +AA LA+ G V +LE+ GG A T F R +
Sbjct: 9 AGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGT--------FRRRGF 48
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 48.1 bits (115), Expect = 3e-06
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 207 LLHHVMGGAEGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKR 263
L G + G++G YP+GG + +ALAR+A+A G ++ VT + +
Sbjct: 121 LRELEPGLSPGIRGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGLEREGGGV 180
Query: 264 ASGVVTNGLEIKAKYV 279
V T EI+A V
Sbjct: 181 T--VETEDGEIRADKV 194
Score = 41.1 bits (97), Expect = 7e-04
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGA--AVTEEIIPGFQFSRASYLLSLLR--PH 57
G GL +A LAR GLSV +LER + GA + PG + RA L L
Sbjct: 7 GGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLHPGLRKERAPLLARLALESRD 66
Query: 58 IYKDLELKKHGLKLLTR 74
++++L +++ G+ R
Sbjct: 67 LWREL-IEELGIDCDFR 82
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 47.9 bits (114), Expect = 1e-05
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 24/109 (22%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
AG GL + +LARAG V V E++ GG V + IIP F+ S S I KD
Sbjct: 545 AGPAGLSAGYFLARAGHPVTVFEKKEKPGG--VVKNIIPEFRISAES---------IQKD 593
Query: 62 LEL-KKHGLKL------------LTRDPRSYTPLSPDKWTNKAKSLTLG 97
+EL K HG++ L Y L+ W + L G
Sbjct: 594 IELVKFHGVEFKYGCSPDLTVAELKNQGYKYVILAIGAWKHGPLRLEGG 642
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 44.0 bits (105), Expect = 8e-05
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
AG +GL +A YLA+AGL VAV ER+ GG
Sbjct: 33 AGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62
Score = 30.5 bits (70), Expect = 2.0
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN-------GLE-----IKAKYVLSN 282
LA +A +GA++F +V ++ L D R +GVV N GL I+AK V+
Sbjct: 109 KLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDA 168
Query: 283 T 283
T
Sbjct: 169 T 169
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 44.1 bits (105), Expect = 1e-04
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNT 283
Y EGG + ALA + +A G ++ VT + +D +GV +G E V+S T
Sbjct: 192 YLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVEVDGEEEDFDAVIS-T 249
Query: 284 TAKCTLLDLIPKGNLDERTTQAVQSIDY 311
L L+P +L ++ IDY
Sbjct: 250 APPPILARLVP--DLPADVLARLRRIDY 275
Score = 34.1 bits (79), Expect = 0.17
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33
G GL +A LA+ G V V E LGG A
Sbjct: 7 GGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 42.1 bits (99), Expect = 5e-04
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVL 280
+ LA A+ +GA+L+ VT + + D GV E++AK V+
Sbjct: 99 KWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVI 145
Score = 39.7 bits (93), Expect = 0.003
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR-----HVLGGAAVT----EEIIPGFQ 43
AG G +A LA+AGL V VLE+ G ++ EE+IP F
Sbjct: 11 AGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFD 61
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 42.2 bits (99), Expect = 5e-04
Identities = 23/90 (25%), Positives = 29/90 (32%), Gaps = 16/90 (17%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGAA---------------VTEEIIPGFQFSRASYL 50
GL +A YLA G V VLE GGAA E+ P S A +
Sbjct: 16 GLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWR 75
Query: 51 LSLLRPHIYKDLELKKHGLKLLTRDPRSYT 80
L ++ L L R+
Sbjct: 76 ELSEELGTGAGLR-RRGLLDLAAREGLKGL 104
Score = 40.7 bits (95), Expect = 0.001
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 214 GAEGVKGAWAYPEGGM---GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN 270
G + V G P GG +++ALA +A+ G + +L+ D R GV T+
Sbjct: 137 GPDFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVII-EGGTPVTSLERDGRVVGVETD 195
Query: 271 GLEIKAKYVL 280
G I+A V+
Sbjct: 196 GGTIEADKVV 205
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts
PRPP to RuBP, flavoprotein [Carbohydrate transport
and metabolism].
Length = 262
Score = 41.5 bits (98), Expect = 5e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
AG +GL +A YLA+AGL VA+ ER+ GG
Sbjct: 38 AGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67
Score = 33.1 bits (76), Expect = 0.26
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Query: 235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN------------GLEIKAKYVLSN 282
LA A +GA++F +V ++ + D R +GVV N L I+AK V+
Sbjct: 114 KLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDA 173
Query: 283 T 283
T
Sbjct: 174 T 174
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme
is involved in the biosynthesis of the thiamine
precursor thiazole, and is repressed by thiamine. This
family includes c-thi1, a Citrus gene induced during
natural and ethylene induced fruit maturation and is
highly homologous to plant and yeast thi genes involved
in thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 39.0 bits (91), Expect = 0.003
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
AG +GL +A YLA+ GL V VLER GG
Sbjct: 29 AGPSGLTAAYYLAKNGLKVCVLERSLAFGG 58
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 39.8 bits (94), Expect = 0.003
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34
AG G AA A G+ VA++ER LGG V
Sbjct: 13 AGQAGPPLAARAAGLGMKVALIERGL-LGGTCV 44
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 39.0 bits (91), Expect = 0.003
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33
AG +GL +A YLA+ GL VA++ER GG A
Sbjct: 25 AGPSGLTAAYYLAKKGLKVAIIERSLSPGGGA 56
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 39.0 bits (92), Expect = 0.006
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGF 42
AG GL +A LAR G V + E R GG + IP F
Sbjct: 148 AGPAGLTAAHRLARKGYDVTIFEARDKAGG--LLRYGIPEF 186
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the
E3 component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to
have distinct functions (ferric leghemoglobin reductase
and NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 36.5 bits (85), Expect = 0.034
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP-HIYK 60
G G V+A A+ GL VA++E+ + LGG + IP ++A LL +Y
Sbjct: 9 GGPGGYVAAIRAAQLGLKVALVEKEY-LGGTCLNVGCIP----TKA-----LLHSAEVYD 58
Query: 61 DL-ELKKHGLKL 71
++ K G+++
Sbjct: 59 EIKHAKDLGIEV 70
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 35.8 bits (83), Expect = 0.036
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
G GL +A LAR GL VA++ER GG +P + L L +
Sbjct: 7 GGPAGLAAAIRLARLGLKVALIER---EGGTCYNRGCLPKKLLLEVAEGLELAIGLALPE 63
Query: 62 LELKKHGLKLLTRDP 76
K+ G+++L
Sbjct: 64 EVYKEFGVEVLLGTE 78
Score = 28.9 bits (65), Expect = 6.7
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 12/77 (15%)
Query: 204 SYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKR 263
LL V G E G + + + G ++ V +I
Sbjct: 42 PKKLLLEVAEGLELAIGLAL---------PEEVYKEF---GVEVLLGTEVVDIDRGEKTV 89
Query: 264 ASGVVTNGLEIKAKYVL 280
V G EI ++
Sbjct: 90 VLKDVETGREITYDKLI 106
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 35.7 bits (83), Expect = 0.048
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 215 AEGVKGAWAYPEGGM---GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--- 268
EG A P GG+ G +++ALA AQA+G +L + VT I K++ GV
Sbjct: 135 NEGAVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIE----KQSDGVFVLN 190
Query: 269 --TNGLEIKAKYV 279
++AK+V
Sbjct: 191 TSNGEETLEAKFV 203
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 35.6 bits (83), Expect = 0.056
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGLEIKAKYVLS 281
AV++A+A QA G ++ VT + D+ A+GVV T E +A+ +++
Sbjct: 149 RAVAEAMAELIQARGGEIRLGAEVTAL----DEHANGVVVRTTQGEYEARTLIN 198
>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.
Length = 428
Score = 35.7 bits (82), Expect = 0.064
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT---------EEIIPGF 42
AG G V+A LAR G V V+ER + G VT E IIPGF
Sbjct: 13 AGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGF 62
>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase. Plants and
cyanobacteria (and, supposedly, Chlorobium tepidum)
have a conserved pathway from two molecules
geranylgeranyl-PP to one of all-trans-lycopene. Members
of this family are the enzyme pytoene desaturase (also
called phytoene dehydrogenase). This model does not
include the region of the chloroplast transit peptide
in plants. A closely related family, excluded by this
model, is zeta-carotene desaturase, another enzyme in
the same pathway [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 453
Score = 35.6 bits (82), Expect = 0.065
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
AG GL A YLA AG + VLE R VLGG
Sbjct: 7 AGLAGLSCAKYLADAGHTPIVLEARDVLGG 36
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 36.0 bits (83), Expect = 0.065
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTE 36
AG GL +A +L R G SV VLE R +GG T+
Sbjct: 701 AGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This
model describes thioredoxin-disulfide reductase, a
member of the pyridine nucleotide-disulphide
oxidoreductases (pfam00070) [Energy metabolism,
Electron transport].
Length = 299
Score = 34.9 bits (81), Expect = 0.073
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI--IPGF 42
AG GL +A Y ARA L ++E G T E+ PGF
Sbjct: 7 AGPAGLTAAIYAARANLKPLLIEGGEPGGQLTTTTEVENYPGF 49
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 35.5 bits (82), Expect = 0.073
Identities = 73/341 (21%), Positives = 102/341 (29%), Gaps = 76/341 (22%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
AG GL +A L +AG V +LE R +GG ++T + P
Sbjct: 15 AGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA----GGEYTDLGGQYINPTHDAL 70
Query: 62 LEL-KKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
L K+ G+ P D + K+ + + + D +
Sbjct: 71 LAYAKEFGV------PLEPFIRDGDNV-------IGYVGSSKSTPKRSLTAAADVRGLVA 117
Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESE 180
LDP + P D L L W
Sbjct: 118 ELEAKARSAGELDPG--LTPEDRELDLES-----------------------LAAW---- 148
Query: 181 PLKATLLTDGL---IGAMVSPHSPSTSYVLLHHVM-------GGAEGVKG----AWAYPE 226
T GL GA VSP V L H G+ G
Sbjct: 149 ---KTSSLRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRL 205
Query: 227 GGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGV-VTNGL--EIKAKYVLSNT 283
GGM +++A A+ G ++ ++ V I D D GV VT + A YVL T
Sbjct: 206 GGMDQLAEAFAK---QLGTRILLNEPVRRIDQDGD----GVTVTADDVGQYVADYVLV-T 257
Query: 284 TAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKS 324
L + L QA + + Y TKI VA
Sbjct: 258 IPLAILGQIDFAPLLPAEYKQAAKGVPYG-SATKIGVAFSR 297
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 35.3 bits (82), Expect = 0.080
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 2 AGHNGLVSAAYLARAGLSVAVL--ERRHVLGGAA 33
AG GLV+AA LA AG V +L E LGG A
Sbjct: 12 AGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 35.1 bits (81), Expect = 0.083
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33
AG GL +A LA AG V + E R LGG
Sbjct: 8 AGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 34.6 bits (80), Expect = 0.094
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 213 GGAEGVKGAWAYPEGGM---GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVT 269
+ V+ + A + LA AQ +GA+L V ++ + D+ V
Sbjct: 71 PNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTRVLDVEIHDDRVVVIVRG 130
Query: 270 NGLEIKAKYVL 280
+ + AK V+
Sbjct: 131 SEGTVTAKIVI 141
Score = 30.8 bits (70), Expect = 1.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLER----RHVLGGAAVT 35
AG G +A LA GL V +LE+ R+ G A++
Sbjct: 8 AGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALS 45
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 34.7 bits (81), Expect = 0.098
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 13 LARAGLSVAVLERRHVLGGAAV 34
A+ G VAV+ER +GG
Sbjct: 24 AAKLGKRVAVIERYRNVGGGCT 45
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This
family of proteins contains FAD dependent
oxidoreductases and related proteins.
Length = 415
Score = 34.8 bits (81), Expect = 0.098
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 8 VSAAY-LARAGLSVAVLERRHVLGGAAVTE 36
V+AA AR G V ++ERR LGG A +
Sbjct: 12 VAAAIAAARLGAKVLLVERRGWLGGMATSG 41
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 34.7 bits (80), Expect = 0.10
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 6 GLVSAAYLARAGLSVAVLERRH 27
GL A LARAGL V +LER
Sbjct: 14 GLALALALARAGLDVTLLERAP 35
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 34.6 bits (79), Expect = 0.11
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 9/50 (18%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLER------RHVLGG---AAVTEEIIPGF 42
AG G V+A +ARAGL V V+ER +++ GG A E IIPGF
Sbjct: 13 AGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGF 62
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 34.9 bits (80), Expect = 0.12
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSR 46
+G GL +AA L + G+ V V E HV+GG V + IP F+ R
Sbjct: 438 SGPAGLAAAADLVKYGVDVTVYEALHVVGG--VLQYGIPSFRLPR 480
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 34.6 bits (80), Expect = 0.13
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 219 KGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKY 278
K + Y GG+ ++ +AL A+ A++ T VT+I + V G +I A
Sbjct: 204 KEKFGYLRGGLQSLIEAL---AEKLEAKIRTGTEVTKIDKKG-AGKTIVDVGGEKITADG 259
Query: 279 VLSNTTA 285
V+S
Sbjct: 260 VISTAPL 266
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 34.2 bits (79), Expect = 0.13
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGF 42
GL +A Y ARAGL V ++ GG + +
Sbjct: 15 GLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENY 51
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 34.1 bits (79), Expect = 0.20
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIP 40
G V+A A+ GL VA++E+ LGG + IP
Sbjct: 16 GYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIP 50
>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase.
Length = 567
Score = 33.7 bits (77), Expect = 0.24
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
AG GL +A YLA AG +LE R VLGG
Sbjct: 101 AGLAGLSTAKYLADAGHKPILLEARDVLGG 130
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 33.6 bits (78), Expect = 0.26
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
+G GL +A LARAG V V ER +GG
Sbjct: 151 SGPAGLAAADQLARAGHKVTVFERADRIGG 180
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 33.7 bits (78), Expect = 0.27
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG-----LEIKAKY 278
YP+ G G + + A +A G ++ + V + D D R + VV N + A
Sbjct: 212 YPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQ 271
Query: 279 VLS 281
V+S
Sbjct: 272 VIS 274
Score = 32.9 bits (76), Expect = 0.42
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 2 AGHNGLVSAAY-LARAGLSVAVLERRHVLGGAAVTEE 37
AG GL +AAY L + G V VLE V+GG + T
Sbjct: 12 AGPAGL-TAAYELLKRGYPVTVLEADPVVGGISRTVT 47
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 33.3 bits (77), Expect = 0.29
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR 26
AG GL A L + G+ V VLER
Sbjct: 18 AGPVGLTLANLLGQYGVRVLVLERW 42
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 33.3 bits (77), Expect = 0.30
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 20/108 (18%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLER-----RHVL----GGAAVT-EEIIPGFQ--FSRAS- 48
G GL++A AR GLSV +LE+ + +L G +T P F + R
Sbjct: 5 GGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGK 64
Query: 49 YLLSLLRPHIYKDLE--LKKHGLKLLTRDPRSYTPLSPDKWTNKAKSL 94
+L S L KDL + GL+L + P S + A +
Sbjct: 65 FLRSALSRFSNKDLIDFFESLGLELKVEEDGRVFPCS-----DSAADV 107
Score = 31.8 bits (73), Expect = 0.77
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 232 VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVL 280
V AL + G ++ T+ V I D GV T+G E +A V+
Sbjct: 107 VLDALLNELKELGVEILTNSKVKSIK--KDDGGFGVETSGGEYEADKVI 153
>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor.
Length = 439
Score = 33.1 bits (76), Expect = 0.35
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 219 KGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKY 278
K + YP G+G + Q AR + G ++ V EI D + + GV + G +AK
Sbjct: 221 KSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDEIVYDENGKVVGVKSGGEVARAKQ 280
Query: 279 VLS 281
V+
Sbjct: 281 VIC 283
>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional.
Length = 488
Score = 32.7 bits (75), Expect = 0.48
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR 26
G GL+ A LA AG+ VA++ERR
Sbjct: 11 GGPTGLMLAGELALAGVDVAIVERR 35
>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional.
Length = 443
Score = 32.3 bits (74), Expect = 0.59
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVT-NGLEIKAKYVL 280
YP G+G + QA +R G + V E+ D + + GV + G K K V+
Sbjct: 226 YPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVI 283
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 32.3 bits (74), Expect = 0.62
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGAAV 34
GL +A A AGL VAV+E+ GGA
Sbjct: 11 GLAAALEAAEAGLKVAVVEKGQPFGGATA 39
>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A
(RAB escort protein) [Posttranslational modification,
protein turnover, chaperones].
Length = 434
Score = 32.1 bits (73), Expect = 0.69
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNT 283
YP G+G +SQ ARS+ G +Q + EI + K V L KA ++S+
Sbjct: 223 YPRYGLGELSQGFARSSAVYGGTYMLNQAIDEI--NETKDVETVDKGSLTQKAGKIISSP 280
Query: 284 T 284
T
Sbjct: 281 T 281
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 31.7 bits (72), Expect = 0.80
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35
AG GL +A L AG V V E+ +GG T
Sbjct: 9 AGIAGLAAAYALREAGREVTVFEKGRGVGGRLAT 42
>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 331
Score = 31.5 bits (72), Expect = 0.93
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 203 TSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLF 248
T+Y +LH A+ + G G G V QAL A +GA+++
Sbjct: 126 TAYQMLHRA---AKVLTGQRVLIHGASGGVGQALLELALLAGAEVY 168
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
biogenesis, outer membrane].
Length = 374
Score = 31.5 bits (72), Expect = 1.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTE 36
AG +G V A A+ G V ++E+R+ +GG A E
Sbjct: 9 AGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE 43
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 31.2 bits (71), Expect = 1.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 243 SGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAK 286
+G +L ++ V L + + GVVT+ E +A V+ T K
Sbjct: 204 NGVELHLNEFVKS--LIGEDKVEGVVTDKGEYEADVVIVATGVK 245
>gnl|CDD|178888 PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.
Length = 130
Score = 29.7 bits (68), Expect = 1.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 13/36 (36%)
Query: 45 SRASYLLSL---LRPHIYKDLELKKHGLKLLTRDPR 77
+RA LL LRP LKK G LTRD R
Sbjct: 84 ARA--LLEYDPDLRP------ALKKAGF--LTRDAR 109
>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family
oxidoreductase 2. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp., in Pelotomaculum
thermopropionicum SI (Firmicutes), and in Geobacter
uraniireducens Rf4 (Deltaproteobacteria). The function
of this oxidoreductase is unknown.
Length = 645
Score = 31.2 bits (71), Expect = 1.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPG 41
G GL +AA AR G V + ER LGG +PG
Sbjct: 387 GGPAGLEAAATAARRGHRVTLFEREDRLGGQVRLAARLPG 426
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 31.0 bits (70), Expect = 1.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
+G GL +A L RAG +V V ER GG
Sbjct: 151 SGPAGLAAADQLNRAGHTVTVFEREDRCGG 180
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 31.3 bits (71), Expect = 1.6
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 2 AGHNGLVSAAYLARAGLSVAVL--ERRHVLGGAA 33
AG GLV+AA LA AG V +L E LGG A
Sbjct: 13 AGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 31.1 bits (71), Expect = 1.6
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34
AG GL A AR GLSV V+ER GA+V
Sbjct: 8 AGILGLAHAYAAARRGLSVTVIERSSRAQGASV 40
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 30.7 bits (70), Expect = 1.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 3 GHNGLVSAAYLARAGLSVAVLERR 26
G G A A GL VA++E+
Sbjct: 21 GITGAGIARDAAGRGLKVALVEKG 44
Score = 29.9 bits (68), Expect = 4.1
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 216 EGVKGAWAYPEGGMGAVSQ------ALARSAQASGAQLFTSQTVTEITLDSDK---RASG 266
+G+KGA+ YP+G V A AR A GA++ T V + +
Sbjct: 148 DGLKGAFRYPDG----VVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVED 203
Query: 267 VVTNGL-EIKAKYVLSNTT 284
T EI+A+ V+ N
Sbjct: 204 RETGETYEIRARAVV-NAA 221
>gnl|CDD|234191 TIGR03377, glycerol3P_GlpA, glycerol-3-phosphate dehydrogenase,
anaerobic, A subunit. Members of this protein family
are the A subunit, product of the glpA gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 516
Score = 30.8 bits (70), Expect = 2.0
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 215 AEGVKGAWAYPEGGMG----AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-- 268
+ GA P+G + + L AQ GA++FT VT + + R +GV
Sbjct: 111 NPDLIGAVKVPDGTVDPFRLVAANVL--DAQEHGARIFTYTKVTGLIREGG-RVTGVKVE 167
Query: 269 --TNG--LEIKAKYV 279
G I+A+ V
Sbjct: 168 DHKTGEEERIEAQVV 182
>gnl|CDD|212595 cd11721, FANCD2, Fanconi anemia D2 protein. The Fanconi anemia ID
complex consists of two subunits, Fanconi anemia I and
Fanconi anemia D2 (FANCI-FANCD2) and plays a central
role in the repair of DNA interstrand cross-links
(ICLs). The complex is activated via DNA damage-induced
phosphorylation by ATR (ataxia telangiectasia and
Rad3-related) and monoubiquitination by the FA core
complex ubiquitin ligase, and it binds to DNA at the ICL
site, recognizing branched DNA structures. Defects in
the complex cause Fanconi anemia, a cancer
predisposition syndrome. The phosphorylation of FANCD2
is required for DNA damage-induced intra-S phase
checkpoint and for cellular resistance to DNA
crosslinking agents.
Length = 1161
Score = 30.7 bits (70), Expect = 2.1
Identities = 24/125 (19%), Positives = 35/125 (28%), Gaps = 12/125 (9%)
Query: 70 KLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEIT 129
KL P K L QK+ +++ + V H+E+I
Sbjct: 731 KLEHVLTSPKKKRMPLLKPLKKGQGFSSLS-QKSPKEVLKALVP---LLPHLCKHLEKIH 786
Query: 130 NLLDPLFDIAPHDFGNLLMYNLFTRRGE-MKDVYSLLTCSAFSIL--NDWFESEPLKATL 186
N L L G L F + + K Y LL + + L
Sbjct: 787 NYLQNLLLSNA---GQLDAPGPFVQENQYAKSCYGLLLQCLRLLFAWPGFSSQS--NRVL 841
Query: 187 LTDGL 191
L L
Sbjct: 842 LKSAL 846
>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 30.6 bits (69), Expect = 2.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
AG GLV+A L R G +V V ER +GG
Sbjct: 18 AGAAGLVAARELRREGHTVVVFEREKQVGG 47
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 31.0 bits (70), Expect = 2.2
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQ 43
+G +GL++A LA G V V E H LGG V IP F+
Sbjct: 314 SGPSGLINAYLLAVEGFPVTVFEAFHDLGG--VLRYGIPEFR 353
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 30.0 bits (68), Expect = 2.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 2 AGHNGLVSAAYLARAGL-SVAVLERRHVLGG 31
AG G+ A +L G V +++R GG
Sbjct: 5 AGAAGMAFADHLLDLGDAPVIIVDRGAQPGG 35
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 30.6 bits (70), Expect = 2.2
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 2 AGHNGLVSAAY-LARAGLSVAVLERRHVLGG 31
G GL SAAY L R G +V + E LGG
Sbjct: 145 GGPAGL-SAAYHLRRMGHAVTIFEAGPKLGG 174
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 30.3 bits (69), Expect = 2.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLER 25
AG GL A LA +GL V ++ER
Sbjct: 11 AGPAGLSFARSLAGSGLKVTLIER 34
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 30.4 bits (69), Expect = 2.3
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
+G GL A LA+ G V + E H GG V IP F+ + ++++ I
Sbjct: 148 SGPAGLTCAGDLAKMGYDVTIFEALHEPGG--VLVYGIPEFRLPKE----TVVKKEIEN- 200
Query: 62 LELKKHGLKLLT 73
+KK G+K+ T
Sbjct: 201 --IKKLGVKIET 210
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
Length = 396
Score = 30.4 bits (69), Expect = 2.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQF 44
G GL +A LAR G+ V +LE+ +G EI G Q
Sbjct: 12 GGIGGLAAALALARQGIKVKLLEQAAEIG------EIGAGIQL 48
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and
rfbD. It is known experimentally in E. coli,
Mycobacterium tuberculosis, and Klebsiella pneumoniae
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 377
Score = 30.1 bits (68), Expect = 2.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIY 59
AG +G+V A LA+ V V+E+R+ +GG E+ F + PHI+
Sbjct: 9 AGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD-EVDETILFHQYG-------PHIF 58
>gnl|CDD|144538 pfam00981, Rota_NS53, Rotavirus RNA-binding Protein 53 (NS53).
This protein is also known as NSP1. NS53 is encoded by
gene 5. It is made in low levels in the infected cells
and is a component of early replication. The protein is
known to accumulate on the cytoskeleton of the infected
cell. NS53 is an RNA binding protein that contains a
characteristic cysteine rich region.
Length = 488
Score = 30.4 bits (69), Expect = 2.7
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 25/76 (32%)
Query: 119 EKYDHHIEEITNLLDP---------LFDIAPHDFGNLLMYNLFTR--RGE------MKDV 161
EK++ +E++ N L+P LF+ H+ N +YN+ + GE + DV
Sbjct: 382 EKWNESVEKLFNCLEPVEIDGVEYVLFN---HEI-NWELYNVIKQILNGEVPFILTLNDV 437
Query: 162 YSLLTCSAFSILNDWF 177
S+L +I+ DWF
Sbjct: 438 KSIL----KAIIYDWF 449
>gnl|CDD|188922 cd09523, SAM_TAL, SAM domain of TAL subfamily. SAM (sterile alpha
motif) domain of TAL (Tsg101-associated ligase)
proteins, also known as LRSAM1 (Leucine-rich repeat and
sterile alpha motif-containing) proteins, is a putative
protein-protein interaction domain. Proteins of this
subfamily participate in the regulation of retrovirus
budding and receptor endocytosis. They show E3 ubiquitin
ligase activity. Human TAL protein interacts with Tsg101
and TAL's C-terminal ring finger domain is essential for
the multiple monoubiquitylation of Tsg101.
Length = 65
Score = 27.6 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 426 SSIEQYCPGFTQDIVGYEIL---TPPDLEK----EFGL 456
S E Y P F + + E L T DL+K E GL
Sbjct: 15 LSAEHYLPVFARHRITMETLSTMTDEDLKKIGIHEIGL 52
>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit;
Validated.
Length = 416
Score = 30.2 bits (69), Expect = 3.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR 26
+G G+ SA YLA+AG V V++R+
Sbjct: 8 SGVIGVTSAWYLAQAGHEVTVIDRQ 32
Score = 29.0 bits (66), Expect = 7.4
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKA-KYVLS 281
Q LA A+ G + + V + ++ R +GV T G I A YV++
Sbjct: 205 QRLAAMAEQLGVKFRFNTPVDGLLVEGG-RITGVQTGGGVITADAYVVA 252
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 30.2 bits (69), Expect = 3.2
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 251 QTVTEITLDSDKRASGVVTN-GLEIKAKYV 279
V ++ ++ +R GVVT G E AK V
Sbjct: 121 GEVEDLIVEEGQRVVGVVTADGPEFHAKAV 150
>gnl|CDD|205235 pfam13054, DUF3915, Protein of unknown function (DUF3915). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 120 amino acids in length.
Length = 116
Score = 28.7 bits (64), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 401 FTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIV 440
F+ + D+D ++DK N N F+ I + CP +DIV
Sbjct: 78 FSALAMGDDKDNKDDDKNNQNRNKFTGILRVCP---EDIV 114
>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 29.8 bits (68), Expect = 3.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLER 25
G G++ LARAG+ V VLE+
Sbjct: 14 GGPAGMMLGLLLARAGVDVTVLEK 37
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 29.6 bits (67), Expect = 3.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR---HVLGGAAVTEE 37
G GL+ A LARAG+ V ++ER VL A +
Sbjct: 9 GGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQ 47
>gnl|CDD|226946 COG4580, LamB, Maltoporin (phage lambda and maltose receptor)
[Carbohydrate transport and metabolism].
Length = 429
Score = 29.8 bits (67), Expect = 3.8
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG---LEIKAKYVLSNTT 284
G G +S AL RS++A G+ +SQ + D R + + LE+ YV +N T
Sbjct: 165 GPGKLSIALVRSSEAGGSSSRSSQNIDTNNNVFDVRLANIELWPGATLELGVDYVRANET 224
Query: 285 A 285
Sbjct: 225 D 225
>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Proteins destined
for proteasome-mediated degradation may be
ubiquitinated. Ubiquitination follows conjugation of
ubiquitin to a conserved cysteine residue of UBC
homologues. TSG101 is one of several UBC homologues that
lacks this active site cysteine.
Length = 139
Score = 28.7 bits (65), Expect = 3.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 313 SPVTKINVALKSIPNFLADPNPSE 336
SP I L SI + L++PNP +
Sbjct: 91 SPALTIEQVLLSIQSLLSEPNPED 114
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 29.7 bits (67), Expect = 4.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVL 29
AG GL +AA L G V V E+ +
Sbjct: 8 AGIGGLTAAALLQEQGHEVKVFEKNESV 35
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 29.5 bits (66), Expect = 4.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI 38
GL +A A+ G V ++E LGG + E+
Sbjct: 148 GLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEV 180
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 29.6 bits (68), Expect = 4.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 251 QTVTEITLDSDKRASGVVTN-GLEIKAKYV 279
V ++ ++ + R GVVT GLE +AK V
Sbjct: 121 GEVEDLIVE-NGRVVGVVTQDGLEFRAKAV 149
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 29.6 bits (67), Expect = 5.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34
G GL +A A AGL VA+L + G V
Sbjct: 14 GGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV 46
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 29.4 bits (66), Expect = 5.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGA 32
+G GL +A A G V V+E+ GGA
Sbjct: 16 SGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46
>gnl|CDD|235159 PRK03784, PRK03784, vtamin B12-transporter permease; Provisional.
Length = 331
Score = 29.2 bits (66), Expect = 5.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 489 IPHLL-LCGSGAH----PGGGVCGAPGYIAAQMVNRLM 521
IPH+L LCG H PG + GA + A +V RL
Sbjct: 263 IPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLA 300
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 29.2 bits (66), Expect = 5.5
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
AG GL +A L+RAG V V ER + GG
Sbjct: 131 AGPAGLAAADDLSRAGHDVTVFERVALDGG 160
>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1). This group
represents Arabidoposis protein AIG1 (avrRpt2-induced
gene 1) that appears to be involved in plant resistance
to bacteria. The Arabidopsis disease resistance gene
RPS2 is involved in recognition of bacterial pathogens
carrying the avirulence gene avrRpt2. AIG1 exhibits
RPS2- and avrRpt1-dependent induction early after
infection with Pseudomonas syringae carrying avrRpt2.
This subfamily also includes IAN-4 protein, which has
GTP-binding activity and shares sequence homology with a
novel family of putative GTP-binding proteins: the
immuno-associated nucleotide (IAN) family. The
evolutionary conservation of the IAN family provides a
unique example of a plant pathogen response gene
conserved in animals. The IAN/IMAP subfamily has been
proposed to regulate apoptosis in vertebrates and
angiosperm plants, particularly in relation to cancer,
diabetes, and infections. The human IAN genes were
renamed GIMAP (GTPase of the immunity associated
proteins).
Length = 201
Score = 28.7 bits (65), Expect = 6.6
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 386 TLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKA 418
+LS PG H LL + TEE++
Sbjct: 78 SLSAPGPHAFLLVVPLGRF--------TEEEEQ 102
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 29.2 bits (66), Expect = 6.7
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
AG G +A A GL +ER LGG + IP S+A LL + + I +
Sbjct: 12 AGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIP----SKA--LLHVAK-VIEEA 64
Query: 62 LELKKHGL 69
L +HG+
Sbjct: 65 KALAEHGI 72
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 29.0 bits (65), Expect = 7.9
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRA 47
AG GL A LARAG+ V V +R +GG + IP F+ +A
Sbjct: 149 AGPAGLACADILARAGVQVVVFDRHPEIGG--LLTFGIPSFKLDKA 192
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 28.7 bits (64), Expect = 8.0
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSR 46
AG GL A+ LA+AG SV V E H GG V IP F+ +
Sbjct: 141 AGPAGLACASELAKAGHSVTVFEALHKPGG--VVTYGIPEFRLPK 183
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 28.8 bits (64), Expect = 8.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI 38
AG +GL +A L R G V VLE R GG T+++
Sbjct: 192 AGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKM 228
>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 639
Score = 28.5 bits (63), Expect = 9.7
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
AG GL A LARAG+ V V +R +GG
Sbjct: 318 AGPAGLGCADILARAGVQVDVFDRHPEIGG 347
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,984,674
Number of extensions: 2643040
Number of successful extensions: 2560
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2545
Number of HSP's successfully gapped: 121
Length of query: 523
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 422
Effective length of database: 6,457,848
Effective search space: 2725211856
Effective search space used: 2725211856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)