RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy893
(523 letters)
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 186 bits (475), Expect = 8e-54
Identities = 86/525 (16%), Positives = 161/525 (30%), Gaps = 113/525 (21%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSR-ASYLLSLLRPHIYK 60
AG GL+SAA L++AG V V ER + GG GFQ S A ++L P+
Sbjct: 8 AGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLS-YKGFQLSSGAFHML----PNGPG 62
Query: 61 DLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
L ++ + + + + + + + F+
Sbjct: 63 GP------LACFLKEVEASVNIVR-------------SEMTTVRVPLKKGNPDYVKGFKD 103
Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESE 180
+ +LL + LL+ + R + + + E
Sbjct: 104 I--SFNDFPSLLSYKDRMKIA----LLIVSTRKNRPSGSSLQAW--------IKSQVSDE 149
Query: 181 PLKATL--LTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALAR 238
L + + ++ ++ G PEGG + AL
Sbjct: 150 WLIKFADSFCGWALSLKSDEVPVEEVFEIIENM----YRFGGTG-IPEGGCKGIIDALET 204
Query: 239 SAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNL 298
A+G ++ T Q V++I ++ + +A+G++ + A V+SN T + L +
Sbjct: 205 VISANGGKIHTGQEVSKILIE-NGKAAGIIADDRIHDADLVISNLGHAATAV-LCSEALS 262
Query: 299 DERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVF 358
E + + P I + L +P H + L
Sbjct: 263 KEADAAYFKMVGTLQPSAGIKICL-----AADEP-------LVGHT-GVLLT-------- 301
Query: 359 DAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKA 418
P TR + + + D L+PPG H+ + P ++
Sbjct: 302 ----------PYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAP--------ENVKNLE 343
Query: 419 NYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLP 478
+ +++ PG YE+L + A P
Sbjct: 344 SEIEMGLEDLKEIFPGKR-----YEVLLIQSYH-----DEWPVNRAA------SGTDP-- 385
Query: 479 IQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYI--AAQMVNRLM 521
G +P L + G GA GG+ G ++ +++
Sbjct: 386 --GNETP---FSGLYVVGDGAKGKGGI-EVEGVALGVMSVMEKVL 424
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 144 bits (366), Expect = 2e-38
Identities = 84/513 (16%), Positives = 145/513 (28%), Gaps = 133/513 (25%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSR-ASYLLSLLRPHIYK 60
AG GL++ A+LAR G + VLE+ ++GG GFQ S A +++ PH
Sbjct: 8 AGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLP-YKGFQLSTGALHMI----PHGED 62
Query: 61 DLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
L L R + + +P K +E
Sbjct: 63 GP------LAHLLRILGAKVEIVN-------------SNP------------KGKILWEG 91
Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESE 180
H E L + + L R ++ A + +
Sbjct: 92 KIFHYRESWKFL------SVKEKAKALKLLAEIRMNKLP----KEEIPADEWIKEKIGEN 141
Query: 181 PLKATLLTD--GLIGAMVSPHSPSTS-YVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALA 237
++L G ++ + + A G GG AV L
Sbjct: 142 EFLLSVLESFAGWADSVSLSDLTALELAKEIRA----ALRWGGPG-LIRGGCKAVIDELE 196
Query: 238 RSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGN 297
R + ++ T + V EI ++ K + E +SN + T + LI +
Sbjct: 197 RIIMENKGKILTRKEVVEINIEEKK---VYTRDNEEYSFDVAISNVGVRET-VKLIGRDY 252
Query: 298 LDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQV 357
D + V SI+ S K N+A+ P + + I
Sbjct: 253 FDRDYLKQVDSIEP-SEGIKFNLAVPGEP-------------RIGNT--IVFTPGL---- 292
Query: 358 FDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDK 417
+ PS+LD +L+ G+ + + + + E+
Sbjct: 293 ---------------MINGFNEPSALDKSLAREGYTLIMAHMALKNGNVKKAIEKGWEE- 336
Query: 418 ANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPL 477
+ + P E L + + NR
Sbjct: 337 ----------LLEIFP-------EGEPLLAQV------------YRDGNPV-----NRTR 362
Query: 478 PIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPG 510
P + +L+ G G P GG+ G
Sbjct: 363 AGLHIEWP---LNEVLVVGDGYRPPGGI-EVDG 391
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 86.9 bits (214), Expect = 2e-18
Identities = 52/386 (13%), Positives = 115/386 (29%), Gaps = 22/386 (5%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
G + + L+ G + VL+R GG + + + + + +
Sbjct: 28 TGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSK-YGENRH 86
Query: 62 LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
+ +L L + TN + L ++ Y+ + + + K
Sbjct: 87 WNVDLIPKFILVGGN-LVKILKKTRVTNYLE--WLVVEGSYVYQHQKKGFLTSEKFIHKV 143
Query: 122 DHHIEEI-TNLLDPLFDIAPHDFGNLLMY--NLFTRRGEMKDVYSLLTCSAFSILNDWFE 178
E + L L + + N Y + D + I +
Sbjct: 144 PATDMEALVSPLLSLME--KNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNL 201
Query: 179 SEPLKATLLTDGLIGAMVSPHSPSTSYVL----LHHVMGGAEGVKGAWAYPEGGMGAVSQ 234
+ L + L L+ A G K + YP G+G + +
Sbjct: 202 CQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAFG-KSPFIYPLYGLGGIPE 260
Query: 235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN-GLEIKAKYVLSNTTAKCTLLDLI 293
+R +G ++ V + D D + G+ ++ G V+ + + L + I
Sbjct: 261 GFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLKNKI 320
Query: 294 PKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCED 353
K + + + + +P+ + N + ++ + + H
Sbjct: 321 KKIG---QVIRCICILS--NPIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQHGVT-- 373
Query: 354 MQQVFDAYQDATQGIPSTRPMIEMVL 379
++ + A AT + IE L
Sbjct: 374 LKGKYIAIVSATVETNNPIKEIEKPL 399
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 86.1 bits (212), Expect = 3e-18
Identities = 46/313 (14%), Positives = 97/313 (30%), Gaps = 69/313 (22%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTE------------------------- 36
G + + ++ G V ++R GG + +
Sbjct: 14 TGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRD 73
Query: 37 ---EIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKW--TNKA 91
++IP F + + LL + + L+ K + + + Y S + +
Sbjct: 74 WNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNL 133
Query: 92 KSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNL 151
+ +K +A F D + FE D M ++
Sbjct: 134 MGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNT--------------------SMRDV 173
Query: 152 FTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHV 211
+ + +DV + D + +P T+ + L+
Sbjct: 174 YRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETIN-----------------RIKLYSE 216
Query: 212 MGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG 271
G K + YP G+G + Q AR + G ++ V +I +++ K GV + G
Sbjct: 217 SLARYG-KSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGK-VVGVKSEG 274
Query: 272 LEIKAKYVLSNTT 284
+ K ++ + +
Sbjct: 275 EVARCKQLICDPS 287
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 69.9 bits (170), Expect = 5e-13
Identities = 48/359 (13%), Positives = 109/359 (30%), Gaps = 29/359 (8%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
G + + L+ G V ++++ GG A + + ++ + + + R +
Sbjct: 19 TGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGK 78
Query: 62 LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
+ + L+ + + L+ + + +++Q++ V K
Sbjct: 79 D--RDWNVDLIPKFLMANGELTNIL-------IHTDVTRYVDFKQVSGSYVFKQGKIYKV 129
Query: 122 DHHIEEITNLLDPLFDI-APHDFGNLLMYNLFTRRGEMKDV--YSLLTCSAFSILNDWFE 178
+ E + PL I L + + ++ L + + +
Sbjct: 130 PANEIEA--ISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 187
Query: 179 SEPLKATLLTDGLIGAMVSPHSPSTSYVL---LHHVMGGAEGVKGAWAYPEGGMGAVSQA 235
K + + L + A K + YP G+G + Q
Sbjct: 188 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQG 247
Query: 236 LARSAQASGAQLFTSQTVTEITLDSD-KRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIP 294
AR + G + E+ D + GV T KA V+++ T P
Sbjct: 248 FARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPT-------YFP 300
Query: 295 KG--NLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNC 351
+ + +R +A+ ++ PV + A ++ + H C
Sbjct: 301 EKCKSTGQRVIRAICILN--HPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVC 357
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 59.1 bits (143), Expect = 1e-09
Identities = 53/333 (15%), Positives = 93/333 (27%), Gaps = 57/333 (17%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI--IPGFQFSR-ASYLLSLLRPHI 58
G +GL +A L AG V +LE LGG A + E +PG + +YL P +
Sbjct: 9 GGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRL 68
Query: 59 YKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNF 118
EL ++G+ T +T +Q +A
Sbjct: 69 AA--ELDRYGIP--TAAASEFTSFRHRLGPT-------------AVDQAFPIPGSEAVAV 111
Query: 119 EKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFE 178
E + + + +D + D +L + + + D
Sbjct: 112 EAATYTLLRDAHRIDLEKGLENQDLEDLDI-----------------PLNEYVDKLDLPP 154
Query: 179 SEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGG---AEGVKGAWAYPEGGMGAVSQA 235
++G S ++L V G + A
Sbjct: 155 VSRQFLLAWAWNMLGQ--PADQASALWMLQLVAAHHYSILGVVLSLDEVFSNGSADLVDA 212
Query: 236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVVT-NGLEIKAKYVLSNTTAKCTLLDLI- 293
++ ++ VT I D V +G +A V+ I
Sbjct: 213 MS----QEIPEIRLQTVVTGIDQSGDVVN--VTVKDGHAFQAHSVIV--ATPMNTWRRIV 264
Query: 294 --PKGNLDERTTQAVQSIDYASPVTKINVALKS 324
P L ER ++ KI + ++
Sbjct: 265 FTPA--LPERRRSVIEEGHGGQ-GLKILIHVRG 294
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 56.4 bits (136), Expect = 9e-09
Identities = 51/361 (14%), Positives = 97/361 (26%), Gaps = 83/361 (22%)
Query: 6 GLVSAAYLARAGL-SVAVLERRHVLGGAAVTEEIIP-----GFQFSRASYLLSLLRPHIY 59
GL + YL +AG +LER +GG + G SY I
Sbjct: 18 GLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPSY------DTI- 70
Query: 60 KDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFE 119
+++ R G R E
Sbjct: 71 ---------QEIMDR---------------------TGDKVDGPK---LRREF----LHE 93
Query: 120 KYDHHIEEITNLLDPLFDIAPHDFGNLLM--YNLFTRRGEMKDVYSLLTCSAFSILNDWF 177
+ ++ E + P A G LL Y + G V+ L +++
Sbjct: 94 DGEIYVPEKDPVRGPQVMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLP----FDEFL 149
Query: 178 ESEPLKAT--LLTDGLIGAMV-SPHSPSTSYVL----LHHVMGGAEGVKGAWAYPEGGMG 230
+A L + + +YVL +M A+G G
Sbjct: 150 ALNGCEAARDLWINPFTAFGYGHFDNVPAAYVLKYLDFVTMMSFAKG---DLWTWADGTQ 206
Query: 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGLEIKAKYVLSNTTAKCT 288
A+ + L + +T IT + V T + ++ ++
Sbjct: 207 AMFEHLNA---TLEHPAERNVDITRITREDG----KVHIHTTDWDRESDVLV----LTVP 255
Query: 289 LLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIH 348
L + + D+ + I + + V + + + ++P G +
Sbjct: 256 LEKFLDYSDADDDEREYFSKIIH----QQYMVDACLVKEYPTISGYVPDNMRPERLGHVM 311
Query: 349 L 349
+
Sbjct: 312 V 312
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 56.1 bits (135), Expect = 1e-08
Identities = 48/334 (14%), Positives = 105/334 (31%), Gaps = 44/334 (13%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
G+ GL + L AG +LE R +GG + + I G+ + + + H+++
Sbjct: 47 GGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSN-IDGYPYEMGGTWVHWHQSHVWR- 104
Query: 62 LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
E+ ++ + P + + + T + +++ R ++ N +
Sbjct: 105 -EITRYKMH-NALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGT 162
Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEP 181
+ + D + + + + + L+ + S L +
Sbjct: 163 NGR-TVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDE------LSLNERSSLEAFILLC- 214
Query: 182 LKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGA--EGVKGAWAY--PEGGMGAVSQALA 237
+ + + S L M G +G + G A ++
Sbjct: 215 ------------SGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFW 262
Query: 238 RSAQASG-AQLFTSQTVTEITLDSDKRASGVV---TNGLEIKAKYVLSNTTAKCTLLDLI 293
A +G V + + D +G E AK V+ T +L I
Sbjct: 263 EEAAGTGRLGYVFGCPVRSVVNERD----AARVTARDGREFVAKRVVC--TIPLNVLSTI 316
Query: 294 ---PKGNLDERTTQAVQSIDYASPVTKINVALKS 324
P L A+Q+ + TK++ + +
Sbjct: 317 QFSPA--LSTERISAMQAGHVSM-CTKVHAEVDN 347
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 2e-08
Identities = 82/522 (15%), Positives = 155/522 (29%), Gaps = 175/522 (33%)
Query: 99 DPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLL--MYNLFTR-- 154
+P E + +F + +++L++P F +L F
Sbjct: 53 EPTTPAELVGKF-----LGY---------VSSLVEPS---KVGQFDQVLNLCLTEFENCY 95
Query: 155 -RGEMKDVYSLLTCSAFSILNDWFESEP-----LKATLLTDGLIGAMVSPHSPSTSYVLL 208
G D+++L A +L + + +K + + S S L
Sbjct: 96 LEG--NDIHAL----AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA---LF 146
Query: 209 HHVMGGAEGVKGAWAYPE-GGMGAVS------QALARSAQASGAQLFT--SQTVTEITLD 259
V G + GG G + L ++ L ++T++E+ +
Sbjct: 147 RAVGEGNAQL-----VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL-IR 200
Query: 260 SDKRASGVVTNGLEIKA-----------KYVLS--------------NTTAKCTLLDLIP 294
+ A V T GL I Y+LS + LL P
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 295 KGNLDER---TTQAVQSIDYASPVTKINVAL-KSIPNFLADPNPSENTVQPHHHGSIH-- 348
G L T Q + VT + +A S +F + + +I
Sbjct: 261 -GELRSYLKGATGHSQGL-----VTAVAIAETDSWESFF------VSVRK-----AITVL 303
Query: 349 ----LNCEDMQQVF-------DAYQDA---TQGIPSTRPM----------IEMVLPSSLD 384
+ C + + +D+ +G+PS PM ++ + +
Sbjct: 304 FFIGVRC---YEAYPNTSLPPSILEDSLENNEGVPS--PMLSISNLTQEQVQDYV--NKT 356
Query: 385 NTLSPPGHHVCL-LF---TQF----TPYKLAGDRDWTEEDKANYATN-----------VF 425
N+ P G V + L P L G + KA + F
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 426 SSIEQYCP---------------GFTQDIVGYEI-LTPPDLEK--EFGLTGGNI--FHGA 465
S+ ++ P +D+V + D++ G ++ G+
Sbjct: 417 SN--RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 466 L--SLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGV 505
+ + + LP++ ++ H+L G G G GV
Sbjct: 475 ISERIVDCIIR--LPVKWETTTQFKATHILDFGPGGASGLGV 514
Score = 35.0 bits (80), Expect = 0.070
Identities = 50/308 (16%), Positives = 95/308 (30%), Gaps = 88/308 (28%)
Query: 3 GH-NGLVSAAYLARAG-------LSVAVLE-------RRH------VLGGAAVTEEIIPG 41
GH GLV+A +A + R + L + + + +
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 42 FQFSRASYLLS---LLRPHIYKDLE-LKKHGLKLLTRDPRSYTPL--SPDKW--TNKAKS 93
S +LS L + + + H L + L + +S
Sbjct: 332 E--GVPSPMLSISNLTQEQVQDYVNKTNSH----LPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 94 LTLGLDPQKNYEQIARFSVKDAQN---FEK----YDH---------HIEEITNLLDPLFD 137
L GL+ + S D Q+ F + + + H ++LL P D
Sbjct: 386 LY-GLNLT--LRKAKAPSGLD-QSRIPFSERKLKFSNRFLPVASPFH----SHLLVPASD 437
Query: 138 IAPHDFGNLLMYNLFTRRGEMK-DVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMV 196
+ D L+ N+ +++ VY T +D + + D +I V
Sbjct: 438 LINKD---LVKNNVSFNAKDIQIPVYD--TFDG----SDLRVLSGSISERIVDCIIRLPV 488
Query: 197 ---SPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTV 253
+ +++L G P GG + R+ +G ++ + T+
Sbjct: 489 KWETTTQFKATHIL---DFG-----------P-GGASGLGVLTHRNKDGTGVRVIVAGTL 533
Query: 254 TEITLDSD 261
+I D D
Sbjct: 534 -DINPDDD 540
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 55.6 bits (134), Expect = 2e-08
Identities = 61/324 (18%), Positives = 99/324 (30%), Gaps = 45/324 (13%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSR-ASYLLSLLRPHIYK 60
G +G+ +A L +GL+V VLE R +GG T SY+ + I +
Sbjct: 12 GGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP-TQNRILR 70
Query: 61 DLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
K+ GL+ + K+ P N + D NF +
Sbjct: 71 --LAKELGLET---YKVNEVERLIHHVKGKSYPFRGPFPPVWNP-----ITYLDHNNFWR 120
Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESE 180
+ P ++ N+ M L + + L T +N +E
Sbjct: 121 TMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLAT----LFVNLCVTAE 176
Query: 181 PLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSA 240
+ + L ++ G G GG G VS+ +
Sbjct: 177 THEVSALWFLWYVK---------QCGGTTRIISTTNG--GQERKFVGGSGQVSERIMDLL 225
Query: 241 QASGAQLFTSQTVTEITLDSDKRASGVV---TNGLEIKAKYVLSNTTAKCTLLDLI---P 294
G ++ + V I + V+ N +AKYV+S TL I P
Sbjct: 226 ---GDRVKLERPVIYIDQTRE----NVLVETLNHEMYEAKYVIS--AIPPTLGMKIHFNP 276
Query: 295 KGNLDERTTQAVQSIDYASPVTKI 318
L Q + + S V K
Sbjct: 277 P--LPMMRNQMITRVPLGS-VIKC 297
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 55.1 bits (133), Expect = 3e-08
Identities = 53/327 (16%), Positives = 92/327 (28%), Gaps = 60/327 (18%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI-----------IPGFQFSRASYLLSLL 54
GL +A L +AGLSVAV+E R +GG T+ I + Q
Sbjct: 17 GLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQ----------- 65
Query: 55 RPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKD 114
+ L + GLK R S + ++ G N
Sbjct: 66 -TALIS--LLDELGLKTF---ERYREGESVYISSAGERTRYTGDSFPTNETTKKEM---- 115
Query: 115 AQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILN 174
+ ++ D +I +P D + + + + + +
Sbjct: 116 DRLIDEMDDLAAQI-GAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDNIG----LFIA 170
Query: 175 DWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQ 234
++P S + GGM VS
Sbjct: 171 GGMLTKPAH-----------SFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSI 219
Query: 235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLI- 293
+A + G +F + V + ++ A+ + + ++A V+ L I
Sbjct: 220 RMAEAL---GDDVFLNAPVRTVK-WNESGATVLADGDIRVEASRVIL--AVPPNLYSRIS 273
Query: 294 --PKGNLDERTTQAVQSIDYASPVTKI 318
P L R Q Q V K+
Sbjct: 274 YDPP--LPRRQHQMHQHQSLGL-VIKV 297
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 54.5 bits (131), Expect = 5e-08
Identities = 51/340 (15%), Positives = 100/340 (29%), Gaps = 64/340 (18%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTE-------------EIIPGFQFSRAS 48
AG GL +A LA AG V VLE GG T +P
Sbjct: 41 AGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVRE 100
Query: 49 YLLSLLRPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIA 108
Y+ +K L+L ++++ + + + +
Sbjct: 101 YI--------------RKFDLRL-------------NEFSQENDNAWYFIKNIRKKVGEV 133
Query: 109 RFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCS 168
+ + K + L + + T + + Y +
Sbjct: 134 KKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKR-------TNCSYILNKYDTYSTK 186
Query: 169 AFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGG 228
+ I + +IG +++ S + + + G
Sbjct: 187 EYLIKEGDLSPGAV-------DMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDG 239
Query: 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDK---RASGVVTNGLEIKAKYVLSNTTA 285
M + A+ R ++ + V +I + K + + A YV+ TT+
Sbjct: 240 MDKLPTAMYRDI---QDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTS 296
Query: 286 KCT-LLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKS 324
+ L+ P L + A++S+ Y S TKI + +
Sbjct: 297 RAVRLIKFNPP--LLPKKAHALRSVHYRS-GTKIFLTCTT 333
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 52.2 bits (125), Expect = 2e-07
Identities = 54/332 (16%), Positives = 94/332 (28%), Gaps = 46/332 (13%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGG-------AAVTEEIIPGFQFSRAS----YLLSLL 54
GL SA L +AG V VLE R GG + ++ Q S Y +
Sbjct: 23 GLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGAT 82
Query: 55 R-PHIYKDLEL-KKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSV 112
R P + L+ ++ G+++ + + + + + N +L A
Sbjct: 83 RIPQSHITLDYCRELGVEI-----QGFGNQNANTFVNYQSDTSLSGQSVTYRAAKADTFG 137
Query: 113 KDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLL--MYNLFTRRGEMKDVYSLLTCSAF 170
++ +K + L L L +L +
Sbjct: 138 YMSELLKK----ATDQGALDQVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPG 193
Query: 171 SILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMG 230
+ LN E +P + IG G + P GGM
Sbjct: 194 AGLNFGTEKKPFAMQEVIRSGIGRN------------FSFDFGYDQA--MMMFTPVGGMD 239
Query: 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGL--EIKAKYVLSNTTAKCT 288
+ A + VT + S+ G I A Y +
Sbjct: 240 RIYYAFQDRIGTD--NIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHL- 296
Query: 289 LLDLIPKGNLDERTTQAVQSIDYASPVTKINV 320
+ L NL A+++ +S K+ +
Sbjct: 297 VGRLQN--NLPGDVLTALKAAKPSS-SGKLGI 325
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 51.8 bits (125), Expect = 3e-07
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 216 EGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGL 272
V A P G + A A A+ GA+L V ++++ GV TN
Sbjct: 132 SEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENN-EIKGVKTNKG 190
Query: 273 EIKAKYVLSNTTA 285
IK V+ N T
Sbjct: 191 IIKTGIVV-NATN 202
Score = 31.8 bits (73), Expect = 0.54
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 9 SAAY-LARAGLSVAVLERRHVLGGA 32
+ A+ LA+ G V V+E+R + G+
Sbjct: 19 TIAHELAKRGEEVTVIEKRFIGSGS 43
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 51.1 bits (123), Expect = 5e-07
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 213 GGAEGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVT 269
V GA P G+ V+ A AR A G + + VT D + + +GV T
Sbjct: 154 DIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGE-KVTGVKT 212
Query: 270 NGLEIKAKYVLSNTTA 285
I A V A
Sbjct: 213 TRGTIHAGKVA-LAGA 227
Score = 28.4 bits (64), Expect = 6.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 2 AGHNGLVSAAYLARAG--LSVAVLERRHVLGGA 32
G +GL +A +LA+ +VAVLE+ + GG
Sbjct: 29 GGGHGLATAYFLAKNHGITNVAVLEKGWLAGGN 61
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 51.3 bits (122), Expect = 5e-07
Identities = 53/356 (14%), Positives = 101/356 (28%), Gaps = 68/356 (19%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQF--------SRASYLLSL 53
AG +GL +A L GL+V V E GG + G + + L
Sbjct: 21 AGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFL 79
Query: 54 L----------------RPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLG 97
+ + +I ++ LL +P + +K + L
Sbjct: 80 IDSLGLREKQQFPLSQNKRYIARN-----GTPVLLPSNPIDLIKSNFLSTGSKLQMLLEP 134
Query: 98 LDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGE 157
+ + S + F + E + L+DP G
Sbjct: 135 ILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVA---------------GTCGG 179
Query: 158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEG 217
D + S + + E +++ GA+ S SP +
Sbjct: 180 DPD-----SLSMHHSFPELWNLEKRFGSVIL----GAIRSKLSPKNEKKQGPPKTSANKK 230
Query: 218 VKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKR----------ASGV 267
+ GGM ++ A+ + +L + V E++ + AS
Sbjct: 231 RQRGSFSFLGGMQTLTDAICK--DLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPH 288
Query: 268 VTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALK 323
E V+ T C + + + + +DY P++ + K
Sbjct: 289 KRQSEEESFDAVIM-TAPLCDVKSMKIAKRGNPFLLNFIPEVDYV-PLSVVITTFK 342
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 50.7 bits (122), Expect = 5e-07
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 215 AEGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG 271
+ + GA + V +A ++A+ GA++F V + D A + T
Sbjct: 146 SGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVE--RDGEALFIKTPS 203
Query: 272 LEIKAKYVL 280
++ A +V+
Sbjct: 204 GDVWANHVV 212
Score = 39.1 bits (92), Expect = 0.003
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGA 32
G G A YLA+ + A+ E + G
Sbjct: 25 GGIIGSAIAYYLAKENKNTALFESGTMGGRT 55
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 49.7 bits (118), Expect = 1e-06
Identities = 59/331 (17%), Positives = 110/331 (33%), Gaps = 33/331 (9%)
Query: 6 GLVSAAYLARAGLS--VAVLERRHVLGGAAVTEEIIPGFQFSRA--SYLLSLLRPHIYKD 61
GL ++ +L+RA V ++E LGG + G F +
Sbjct: 14 GLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLL 73
Query: 62 LELKKHGLKLLTRDPRSYTPLSPDKWT---NKAKSLTLGLDPQKNYEQIARFSVKDAQNF 118
L + + GL R P + +++ +L GL +
Sbjct: 74 L-VSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGL--------RGLLRPSPPFSK 124
Query: 119 EKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR---GEMKDVYS--LLTCSAFSIL 173
+ + E+T D H F + + V++ S S
Sbjct: 125 PLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCF 184
Query: 174 NDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVS 233
F++E ++L L+GA +P S A + + GG+ +
Sbjct: 185 PSLFQAEQTHRSILLGLLLGAGRTPQPDSALI-------RQALAERWSQWSLRGGLEMLP 237
Query: 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLI 293
QAL + G + Q V ++L ++ R V ++A +V+S A L +L+
Sbjct: 238 QALETHLTSRGVSVLRGQPVCGLSLQAEGRWK-VSLRDSSLEADHVISAIPAS-VLSELL 295
Query: 294 PKGNLDERTTQAVQSIDYASPVTKINVALKS 324
P +A+ +I V +N+ +
Sbjct: 296 P--AEAAPLARALSAITAV-SVAVVNLQYQG 323
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 3e-06
Identities = 53/382 (13%), Positives = 110/382 (28%), Gaps = 114/382 (29%)
Query: 19 SVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTRDPRS 78
++ H+ + + SLL K L+ + L PR
Sbjct: 280 FLSAATTTHI-----SLDHHSMTLT---PDEVKSLLL----KYLDCRPQDL------PRE 321
Query: 79 YTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDP---- 134
+P + + A+S+ GL N++ + N +K IE N+L+P
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHV---------NCDKLTTIIESSLNVLEPAEYR 372
Query: 135 -LFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIG 193
+FD +F + + S++ WF+ ++ + L
Sbjct: 373 KMFD----RLS------VF-----PPSAH--IPTILLSLI--WFDVIKSDVMVVVNKLHK 413
Query: 194 -AMVSPHSPSTSYVL----------------LHHVMGGAEGVKGAWAYPEGGMGAVSQA- 235
++V ++ + LH + + + +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQ 471
Query: 236 ---------LARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAK 286
L LF + LD LE K ++ + A
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLF-----RMVFLD---------FRFLEQKIRHDSTAWNAS 517
Query: 287 CTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVA----LKSIPNFLADPNPSENTVQPH 342
++L+ + + Y + + + +I +FL P EN +
Sbjct: 518 GSILNTL----QQLKF--------YKPYICDNDPKYERLVNAILDFL--PKIEENLICSK 563
Query: 343 HHGSIH--LNCEDMQQVFDAYQ 362
+ + L ED +A++
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHK 585
Score = 47.5 bits (112), Expect = 8e-06
Identities = 61/418 (14%), Positives = 120/418 (28%), Gaps = 128/418 (30%)
Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNL--FTRRGEMKDVYSLLTCSAFSILNDWFE 178
+ HH++ T + + ++L F + KDV + SIL+
Sbjct: 3 HHHHMDFETGEHQ-------YQYKDILSVFEDAFVDNFDCKDVQDMPK----SILSK--- 48
Query: 179 SEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMG-GAEGVK---------------GAW 222
E D +I S + S + L ++ E V+
Sbjct: 49 EE-------IDHIIM---SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 223 AY----PEGGMGAVSQALARSAQASGAQLFTSQTVT------EIT--LDSDKRASGVVTN 270
P + R + Q+F V+ ++ L + A V+ +
Sbjct: 99 KTEQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 271 GLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFL- 329
G+ K + A L + +D + + ++ + L+ + L
Sbjct: 157 GVLGSGKTWV----ALDVCLSYKVQCKMDFK----IFWLNLKN-CNSPETVLEMLQKLLY 207
Query: 330 -ADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSL---DN 385
DPN + + H +I L +Q R + + L N
Sbjct: 208 QIDPNWTS---RSDHSSNIKLRIHSIQAEL------------RRLLKSKPYENCLLVLLN 252
Query: 386 TLSPPGHHV------C-LLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQD 438
+ C +L T T R D + AT S++ + T D
Sbjct: 253 VQNA--KAWNAFNLSCKILLT--T-------RFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 439 IVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPS-SPF--TLIPHLL 493
E+ + + L+ + LP + + +P ++I +
Sbjct: 302 ----EVKS--------------LL--LKYLDCRPQD--LPREVLTTNPRRLSIIAESI 337
Score = 42.1 bits (98), Expect = 5e-04
Identities = 71/513 (13%), Positives = 136/513 (26%), Gaps = 191/513 (37%)
Query: 36 EEIIPGFQ--FSR---ASYLLSLLRPHIYKDLELKKHGLKLLTRDPRSY----------- 79
++I+ F+ F + + + I E+ H + +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKS-ILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 80 --------TPLSPD-KW-------TNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYD- 122
L + K+ + S+ + Y + D Q F KY+
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-----MTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 123 HHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEM----KDVYSLLTCSAFSILND--- 175
++ L L ++ P N+L+ G + K +L C ++ +
Sbjct: 132 SRLQPYLKLRQALLELRPAK--NVLID------G-VLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 176 ---WFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMG--GAEGVKGAWAYPEGGMG 230
W L + SP + L + + + +
Sbjct: 183 KIFW----------LN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IH 228
Query: 231 AVSQALARSAQASGAQLFTSQTVTE--ITLD--SDKRASGVVTNGLEIKAKYVLSNTTAK 286
++ L R L S+ + L + + N + K
Sbjct: 229 SIQAELRR--------LLKSKPYENCLLVLLNVQNAK----AWNAFNLSCK--------- 267
Query: 287 CTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGS 346
LL TT+ Q D+ S T +++L L P E S
Sbjct: 268 -ILL-----------TTRFKQVTDFLSAATTTHISLDHHSMTL---TPDEVK-------S 305
Query: 347 IHLNCEDMQQVFDAYQDATQGIPSTRPMI-EMV--LPSSLDNTLSPPGHHVCLLFTQFTP 403
+ L D + D ++ P +I E + ++ DN
Sbjct: 306 LLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDN------------------ 346
Query: 404 YKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEF-GLTGGNIF 462
+K + + ++I + +L P + K F L+ +F
Sbjct: 347 WK-------------HVNCDKLTTIIESS---------LNVLEPAEYRKMFDRLS---VF 381
Query: 463 HGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLC 495
P S IP +LL
Sbjct: 382 -------------------PPS--AHIPTILLS 393
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 47.8 bits (114), Expect = 7e-06
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 216 EGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGL 272
E + G P G+ Q L + +++G S TVT I R +GV T
Sbjct: 134 ENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGG-RVTGVQTADG 192
Query: 273 EIKAKYVLS 281
I A V+S
Sbjct: 193 VIPADIVVS 201
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 46.5 bits (110), Expect = 2e-05
Identities = 54/401 (13%), Positives = 116/401 (28%), Gaps = 93/401 (23%)
Query: 6 GLVSAAYLARA------GLSVAVLERRHVLGGAAVTEEIIPGFQF--------SRASYLL 51
GL +A Y+ + L + ++E +GG T + G+ R
Sbjct: 17 GLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVK-KDGYIIERGPDSFLERKKSAP 75
Query: 52 SLLR---------------PHIYKDLELKKHGLKLLTRDPRSYTPL-SPDKWTNKAKSLT 95
L++ ++ + L + P P S ++ K
Sbjct: 76 QLVKDLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGK-AR 134
Query: 96 LGLDPQKNYEQIARFSVKDAQNFEKY--DHHIEEIT-NLLDPLFDIAPHDFGNLLMYNLF 152
+D + KD Q+ ++ +E+ NL++PL +Y
Sbjct: 135 AAMDF-----ILPASKTKDDQSLGEFFRRRVGDEVVENLIEPLLS---------GIYA-- 178
Query: 153 TRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVM 212
D+ L S F + LI M + L
Sbjct: 179 ------GDIDKLSLMSTFPQFYQTEQKHR--------SLILGMKKTRPQGSGQQL----- 219
Query: 213 GGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGL 272
+G + G+ + + + + Q +++ VT+++ + + NG+
Sbjct: 220 --TAKKQGQFQTLSTGLQTLVEEIEK--QLKLTKVYKGTKVTKLSHSGSCYSL-ELDNGV 274
Query: 273 EIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADP 332
+ A V+ K ++ + ++++ S + +
Sbjct: 275 TLDADSVIVTAPHK-AAAGMLS----ELPAISHLKNMHSTSVAN-VALGFP--------- 319
Query: 333 NPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRP 373
E +VQ H G+ + + A + P P
Sbjct: 320 ---EGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAP 357
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 45.3 bits (108), Expect = 3e-05
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 216 EGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGL 272
+ V GA P G A+ Q R + + Q+ + EI A V +
Sbjct: 137 DKVFGATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIR--RVDGAWEVRCDAG 194
Query: 273 EIKAKYV 279
+A +
Sbjct: 195 SYRAAVL 201
Score = 28.7 bits (65), Expect = 4.3
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 8 VSAAY-LARAGLSVAVLERRHVLG 30
S Y L+ G V VLER G
Sbjct: 22 ASTGYWLSAHG-RVVVLEREAQPG 44
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 45.0 bits (106), Expect = 5e-05
Identities = 57/350 (16%), Positives = 96/350 (27%), Gaps = 75/350 (21%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQF--------SRASYLLSL 53
G +GL A +L G +LE LGGA T + G+ R +L
Sbjct: 24 GGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREPATRAL 82
Query: 54 L-----------------RPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTL 96
R ++Y L + + L A L
Sbjct: 83 AAALNLEGRIRAADPAAKRRYVYTRGRL--RSVPASPPAFLASDILPLGARLRVAGELFS 140
Query: 97 GLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFD-IAPHDFGNLLMYNLFTRR 155
P+ E +A F + LLD + I D L
Sbjct: 141 RRAPEGVDESLAAF-GRRHLGHRATQ-------VLLDAVQTGIYAGDVEQL--------- 183
Query: 156 GEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGA 215
S + + E +L+ + + + G A
Sbjct: 184 ------------SVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPA--------GTA 223
Query: 216 EGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN--GLE 273
+ GA + +GG+ + ALA + G V + + + + E
Sbjct: 224 PKLSGALSTFDGGLQVLIDALAA---SLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAE 280
Query: 274 IKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALK 323
+ V+ A L+ LD+ V I YA P+ +++
Sbjct: 281 LSVAQVVLAAPAH-ATAKLLR--PLDDALAALVAGIAYA-PIAVVHLGFD 326
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 43.6 bits (102), Expect = 9e-05
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 2 AGHNGLVSAAYLA--RAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIY 59
AG +GL +A +A R L V ++E GG + + G FS ++
Sbjct: 73 AGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW----LGGQLFSAM--VMRKPAHLFL 126
Query: 60 KDL--ELKKHGLKLLTRDPRSYTPLSPDKWTNKA 91
++L + G ++ + L +K
Sbjct: 127 QELEIPYEDEGDYVVVKHA----ALFISTVLSKV 156
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 42.5 bits (99), Expect = 2e-04
Identities = 76/534 (14%), Positives = 140/534 (26%), Gaps = 90/534 (16%)
Query: 2 AGHNGLVSAAYLARAGLS-VAVLERRHVLGGAAVTEEIIPGFQFSR-ASYLLSLLRPHIY 59
AG GL +A+ L + G+ VLE R +GG T G ++ AS+ L ++
Sbjct: 16 AGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLF 75
Query: 60 ---KDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQ 116
L L + + D + D + E + K A+
Sbjct: 76 LEEAQLSLNDGRTRFVFDDDNFIYIDEERGRVDH--------DKELLLEIVDNEMSKFAE 127
Query: 117 NFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDW 176
+ + + F L+M L RR + + L W
Sbjct: 128 LEFHQHLGVSDCS-------------FFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELW 174
Query: 177 FESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQAL 236
+ G +G +V Q +
Sbjct: 175 HGL----------------------DWKLLSAKDTYFGHQGR----NAFALNYDSVVQRI 208
Query: 237 ARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKG 296
A+S L S V IT + K + +G A YV+ L + P+
Sbjct: 209 AQSF--PQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEK 266
Query: 297 N----------LDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGS 346
N L A I + + + K+ + ++ + T+ +
Sbjct: 267 NLRGRIEFQPPLKPVIQDAFDKIHFGA-LGKVIFEFEE--CCWSNESSKIVTLANSTNEF 323
Query: 347 IHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKL 406
+ + + + P N G + L
Sbjct: 324 VEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVAS-FMM--LMQAPL 380
Query: 407 AGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGAL 466
+ EDK + + + + V + + P +E
Sbjct: 381 TNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVI-DGMRP--IENIAN----------- 426
Query: 467 SLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRL 520
N+P+ S +T P+ S PG ++ +R+
Sbjct: 427 ------ANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRI 474
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 42.0 bits (98), Expect = 3e-04
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 2 AGHNGLVSAAYLAR-AGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYK 60
AG GL +A +++ + VA++E+ GG A + G FS
Sbjct: 47 AGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA----WLGGQLFSAMIVRKPAHLFLDEI 102
Query: 61 DLELKKHGLKLLTRDPRSYT 80
+ + ++ + +T
Sbjct: 103 GVAYDEQDTYVVVKHAALFT 122
Score = 36.6 bits (84), Expect = 0.013
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 16/80 (20%)
Query: 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN---------------GLEIK 275
S +++ +LF + ++ + R GVVTN ++
Sbjct: 121 FTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVME 179
Query: 276 AKYVLSNTTAKCTLLDLIPK 295
AK V+S+ K
Sbjct: 180 AKIVVSSCGHDGPFGATGVK 199
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 42.1 bits (98), Expect = 3e-04
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 2 AGHNGLVSAAYLA--RAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIY 59
AG GL +A L+ R L + ++E GG A + G FS
Sbjct: 87 AGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA----WLGGQLFSAMVMRKPA--DVFL 140
Query: 60 KDL--ELKKHGLKLLTRDPRSYTPLSPDKWTNKA 91
++ + G ++ + +T K +
Sbjct: 141 DEVGVPYEDEGDYVVVKHAALFTSTVLSKVLQRP 174
Score = 29.3 bits (65), Expect = 3.0
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 18/93 (19%)
Query: 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN---------------GLE 273
V + R A + + ++ R +GVVTN
Sbjct: 181 ATTVEDLITRKHHAESSSSSDDGEAED---EAKVRIAGVVTNWTLVSMHHDDQSAMDPNT 237
Query: 274 IKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAV 306
I A ++S T K + + + +
Sbjct: 238 INAPVIISTTGHDGPFGAFSVKRLVSMKQMERL 270
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 41.9 bits (99), Expect = 3e-04
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 219 KGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKY 278
+ E +A A+A GA++ T V + + D + T A
Sbjct: 143 NSGVLFSEN----CIRAYRELAEARGAKVLTHTRVEDFDISPDSV--KIETANGSYTADK 196
Query: 279 VL 280
++
Sbjct: 197 LI 198
Score = 36.9 bits (86), Expect = 0.013
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 2 AGHNGLVSAAY-LARAGLSVAVLERRHVL--GGAAVTEEIIPGFQFSRASYLLSLLRP-- 56
AG G+ +A Y LA+ G+ +++ G+ + I + + L
Sbjct: 11 AGSMGM-AAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQ 69
Query: 57 HIYKDLELKKHGLKLLTR 74
++ +LE K+ K+ T+
Sbjct: 70 ELWYELE-KETHHKIFTK 86
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 41.6 bits (98), Expect = 4e-04
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 220 GAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYV 279
+ E + + A+ +G + VT I D D + T E +AK
Sbjct: 143 SGFLRSE----LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVT--IETADGEYQAKKA 196
Query: 280 L 280
+
Sbjct: 197 I 197
Score = 35.0 bits (81), Expect = 0.055
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 2 AGHNGLVSAAY-LARAGLSVAVLERRHVLGGAAVT 35
+G G +A Y RAGL+V + +
Sbjct: 10 SGSVGA-AAGYYATRAGLNVLMTDAHMPPHQHGSH 43
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 41.5 bits (97), Expect = 5e-04
Identities = 53/341 (15%), Positives = 104/341 (30%), Gaps = 48/341 (14%)
Query: 6 GLVSAAYLARA--GLSVAVLERRHVLGGAAVTEEIIPGFQF--------SRASYLLSLLR 55
GL +A Y RA L++ +LE LGG T GF +R L L+
Sbjct: 16 GLAAAYYAERAFPDLNITLLEAGERLGGKVATYR-EDGFTIERGPDSYVARKHILTDLIE 74
Query: 56 PHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGL-DPQKNYEQIARFSVKD 114
+ L G KL+ + L K +G+ + Q + ++
Sbjct: 75 -----AIGL---GEKLVRNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEE 126
Query: 115 AQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILN 174
+E+ +LL D ++ + R V L+ I
Sbjct: 127 K----------QEVADLLLHPSDSLRIPEQDIPLGEYLRPRLGDALVEKLIEPLLSGIYA 176
Query: 175 DWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGV------KGAWAYPEGG 228
+ AT + S L+ + + G + E G
Sbjct: 177 GNIDQMSTFATY--PQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETG 234
Query: 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCT 288
+ ++ + L +++ + I+ + + + T+ A YVL
Sbjct: 235 LESLIERLE--EVLERSEIRLETPLLAISREDGRYR--LKTDHGPEYADYVLLTIPHP-Q 289
Query: 289 LLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFL 329
++ L+P +L ++ + S T + + +
Sbjct: 290 VVQLLPDAHLP-----ELEQLTTHSTATVTMIFDQQQSLPI 325
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 41.4 bits (96), Expect = 5e-04
Identities = 50/333 (15%), Positives = 92/333 (27%), Gaps = 48/333 (14%)
Query: 2 AGHNGLVSAAYLARAGL-SVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYK 60
AG GL +A L G + + E GG + + GF + +++ +
Sbjct: 17 AGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDD 76
Query: 61 DLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNY-----EQIARFSVKDA 115
++ G +L R+ + + + L +K AR +
Sbjct: 77 VMDWAVQGWNVLQRESWVWVRGRWVPYPFQNNIHRLPEQDRKRCLDELVRSHARTYTEPP 136
Query: 116 QNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILND 175
NFE + FG + ++F R K + + +
Sbjct: 137 NNFE-----------------ESFTRQFGEGI-ADIFMRPYNFK----VWAVPPCLMSTE 174
Query: 176 WFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQA 235
W E L + + G GG G + QA
Sbjct: 175 WVEERVAPVDL-------------ERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQA 221
Query: 236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPK 295
+ + + I D+ +NG + Y++S T LL +
Sbjct: 222 IKEKLPSEKLTFNSGFQAIAIDADAKTI---TFSNGEVVSYDYLIS-TVPFDNLLRMTKG 277
Query: 296 GNLD--ERTTQAVQSIDYASPVTKINVALKSIP 326
+ + Y S I + +K P
Sbjct: 278 TGFKGYDEWPAIADKMVY-SSTNVIGIGVKGTP 309
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 41.4 bits (96), Expect = 6e-04
Identities = 38/305 (12%), Positives = 79/305 (25%), Gaps = 40/305 (13%)
Query: 2 AGHNGLVSAAYLARA-GLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIY- 59
AG GL +A L + G S +++ GG A T+ GF + H+
Sbjct: 18 AGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVG--------GHVIF 69
Query: 60 -KDLELKKHGLKLLTRDP--RSYTPLSPDKWTNKAKSLTLGLD-PQKNYEQIARFSVKDA 115
+ L ++ ++ +S + + + E+ +
Sbjct: 70 SHYKYFDDCLDEALPKEDDWYTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKCIDGMI 129
Query: 116 QNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILND 175
+ + + + + G +
Sbjct: 130 DAALEARVANTKPKTFDEWIVRM----MGTGIADLFMRPYNFKVWAVPTTKMQC-----A 180
Query: 176 WFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQA 235
W L T+ V+L G GG G + A
Sbjct: 181 WLGERVAAPNL-------------KAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIA 227
Query: 236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPK 295
+A + + VT++ ++ + +G I K ++S L + +
Sbjct: 228 VANTLPKEKTRFGEKGKVTKVNANNKT---VTLQDGTTIGYKKLVSTMAVD-FLAEAMND 283
Query: 296 GNLDE 300
L
Sbjct: 284 QELVG 288
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 41.3 bits (96), Expect = 6e-04
Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 20/133 (15%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIY-- 59
AG G V A LA +G V +++RR +GG A G PHI+
Sbjct: 37 AGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHP-------YGPHIFHT 89
Query: 60 ----------KDLELKKHGLKLLTRDPRSYTPLSPDKWT-NKAKSLTLGLDPQKNYEQIA 108
+ E + + ++L P+ + T N+ L L + +
Sbjct: 90 NSKDVFEYLSRFTEWRPYQHRVLASVDGQLLPIPINLDTVNRLYGLNLTSFQVEEFFASV 149
Query: 109 RFSVKDAQNFEKY 121
V+ + E
Sbjct: 150 AEKVEQVRTSEDV 162
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 40.6 bits (96), Expect = 0.001
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI--IPGFQ 43
AG G +A Y AR+G SVA+L++ G A + GF+
Sbjct: 24 AGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFK 67
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 40.7 bits (95), Expect = 0.001
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG---LEIKAKYVL 280
+ L A++ G + VT++ L R V G + +++ +V+
Sbjct: 132 KLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVI 181
Score = 38.8 bits (90), Expect = 0.004
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 6 GLVSAAYLARAGLSVAVLERRH 27
G V+ L + G V + ER
Sbjct: 35 GSVAGLTLHKLGHDVTIYERSA 56
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 40.1 bits (94), Expect = 0.001
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 220 GAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYV 279
G AL AQA+GA L +TVTE+ D+D V T+ +A V
Sbjct: 147 GGTIDVR----GTLAALFTLAQAAGATLRAGETVTELVPDADG--VSVTTDRGTYRAGKV 200
Query: 280 L 280
+
Sbjct: 201 V 201
Score = 33.6 bits (77), Expect = 0.15
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 2 AGHNGLVSAAY-LARAGLSVAVLERRHVLGGAAVT 35
G GL + A+ +A G V VLER T
Sbjct: 12 GGPVGL-ATAWQVAERGHRVLVLERHTFFNENGGT 45
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 39.8 bits (94), Expect = 0.002
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGF 42
AG GL ++ L RA +A+ + VT+ GF
Sbjct: 14 AGPAGLNASLVLGRARKQIALFDNN--TNRNRVTQN-SHGF 51
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB
prenylation, post-translational modification, protein
binding/protein transport complex; HET: GER GDP PG4;
2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB:
1vg9_A* 1ltx_R*
Length = 650
Score = 39.9 bits (92), Expect = 0.002
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 17/140 (12%)
Query: 219 KGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGLEIKA 276
+ +P G G + Q R G +V + +D + R V G I +
Sbjct: 367 NTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIIS 426
Query: 277 KYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSI---DYASPVTKIN--VALKSIPNFLAD 331
K+ + + L + Q +++ D + T + V++ ++P
Sbjct: 427 KHFIIEDS------YLSENTCSRVQYRQISRAVLITDGSVLRTDADQQVSILTVPA---- 476
Query: 332 PNPSENTVQPHHHGSIHLNC 351
P V+ S + C
Sbjct: 477 EEPGSFAVRVIELCSSTMTC 496
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 39.6 bits (93), Expect = 0.002
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG----LEIKAKYV 279
+ LA A +GA ++ + ++ + +G ++++AK V
Sbjct: 106 KHLAALAAKAGADVWVKSPALGVIKENG-KVAGAKIRHNNEIVDVRAKMV 154
Score = 37.3 bits (87), Expect = 0.009
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLG-----GAAVTEEII 39
G G +A Y A+ GL ++E+R +G G +++ I+
Sbjct: 12 GGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGIL 54
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 39.8 bits (93), Expect = 0.002
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 6 GLVSAAYLARAGLSVAVLER----RHVLGGAAVTEEIIPGFQF 44
G V+A+ + ++G V ++E+ R V+G ++ +
Sbjct: 17 GTVAASLVNKSGFKVKIVEKQKFPRFVIGE-SLLPRCMEHLDE 58
Score = 37.8 bits (88), Expect = 0.006
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVT---NGLEIKAKYVL 280
+ LA A G + VT+I + + N EI+A++++
Sbjct: 110 KTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFII 159
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 38.8 bits (90), Expect = 0.004
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 6 GLVSAAYLARAGLSVAVLER----RHVLGGAAV 34
G A+++A G V +LER RH +G + +
Sbjct: 19 GSTLASFVAMRGHRVLLLEREAFPRHQIGESLL 51
Score = 36.5 bits (84), Expect = 0.020
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG-----LEIKAKYVL 280
L R+++ G + V ++ + + RA GV L A++++
Sbjct: 115 DMLLRNSERKGVDVRERHEVIDVLFEGE-RAVGVRYRNTEGVELMAHARFIV 165
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 38.1 bits (88), Expect = 0.005
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI 38
+G G V A L + V V+E+R+ +GG A TE+
Sbjct: 9 SGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDC 45
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 37.7 bits (86), Expect = 0.006
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQF 44
G GL +A L AG V + ++ GG ++
Sbjct: 10 TGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKR-SDAGAL 51
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 37.5 bits (88), Expect = 0.007
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI--IPGF 42
+ GL +A L RA ++ +++ G
Sbjct: 10 GSYAGLSAALQLGRARKNILLVDAGE--RRNRFASHSHGFLGQ 50
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD;
1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 37.5 bits (88), Expect = 0.008
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGA-AVTEEI--IPGF 42
+G G +A Y AR G+ ++ R GG T +I
Sbjct: 9 SGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDIENYISV 50
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 37.5 bits (87), Expect = 0.010
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG------LEIKAKYV 279
Q + + AQ G +++ T + + G V L + +K V
Sbjct: 104 QRVLKEAQDRGVEIWDLTTAMKPIFEDG-YVKGAVLFNRRTNEELTVYSKVV 154
Score = 36.7 bits (85), Expect = 0.016
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 6 GLVSAAYLARAGLSVAVLERR-------HVLGGA---AVTEEIIPGF 42
G +A L+R GL + +++ + G A A +++ +
Sbjct: 18 GSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPY 64
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 37.3 bits (87), Expect = 0.012
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGA-AVTEEI--IPGF 42
+G G +A Y AR G+ ++ R GG T +I
Sbjct: 220 SGPAGAAAAVYSARKGIRTGLMGER--FGGQVLDTVDIENYISV 261
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 36.6 bits (84), Expect = 0.019
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI 38
AG +G V LA G V ++++R +GG +
Sbjct: 11 AGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARD 47
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 35.2 bits (82), Expect = 0.022
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGA-AVTEEI--IPGF 42
GL +A +LARAGL V VL+ + PG
Sbjct: 13 GLSAALFLARAGLKVLVLDG---GRSKVKGVSRVPNYPGL 49
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 35.8 bits (83), Expect = 0.026
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGA 32
G +GL + +L R+GLS +L+ GGA
Sbjct: 11 GGQSGLSAGYFLRRSGLSYVILDAEASPGGA 41
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta
fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium
loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A*
3alm_A* 3all_A*
Length = 379
Score = 35.7 bits (83), Expect = 0.029
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLG--GAAVT 35
G GL +A L + G V + E+ L GA +
Sbjct: 19 GGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIY 54
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 36.0 bits (84), Expect = 0.030
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 216 EGVKGAWAYPEGGM---GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG- 271
+ P G+ A+ A A++ GAQL + + +
Sbjct: 134 HCTAALVS-PSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAE 192
Query: 272 -LEIKAKYV 279
+ + + +
Sbjct: 193 PMTLSCRVL 201
Score = 29.8 bits (68), Expect = 2.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLG 30
AG GL A LA G V V E +G
Sbjct: 12 AGVVGLAIARALAAGGHEVLVAEAAEGIG 40
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 35.7 bits (83), Expect = 0.036
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR 26
G G + A L R G V V+E+
Sbjct: 14 CGIGGAMLAYLLGRQGHRVVVVEQA 38
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide
binding, FAD, flavoprotein, oxidoreductase; HET: FAD;
1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 35.2 bits (82), Expect = 0.046
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 5/40 (12%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGA-AVTEEI--IPGF 42
+A Y AR L V+ GG + G
Sbjct: 27 AYGAALYSARYMLKTLVIGE--TPGGQLTEAGIVDDYLGL 64
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 34.9 bits (81), Expect = 0.057
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLG--GAAVT 35
AG GL +A L ++G+ V E + GAA++
Sbjct: 31 AGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAIS 66
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 35.0 bits (81), Expect = 0.058
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR 26
AG GL+ A L G+ V VLE+
Sbjct: 20 AGPAGLMLAGELRLGGVDVMVLEQL 44
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND
FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2
d.16.1.1 PDB: 3cox_A*
Length = 507
Score = 34.7 bits (79), Expect = 0.063
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLER 25
+G+ G V+A L +AG+ ++E
Sbjct: 19 SGYGGAVAALRLTQAGIPTQIVEM 42
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 32.2 bits (73), Expect = 0.064
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 410 RDWTEEDKANYATNVFSSIEQYCPGFTQ-DIVGYEI--LTPPDLEKEFGLTGG 459
DWT E+ Y + +S+ + F + +I G + L + K GL G
Sbjct: 15 IDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLG 67
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 34.8 bits (81), Expect = 0.066
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGG 31
GL +A L G V V +R +GG
Sbjct: 134 GLAAAEELRAKGYEVHVYDRYDRMGG 159
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 34.6 bits (80), Expect = 0.079
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR 26
AG G++ A L AG+ V VLER
Sbjct: 19 AGPAGMMLAGELRLAGVEVVVLERL 43
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 34.6 bits (78), Expect = 0.085
Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 3/167 (1%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
+G +GL +A L G+ V +LE R +GG T A + L +
Sbjct: 286 SGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAV- 344
Query: 62 LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFS-VKDAQNFEK 120
K+ ++L + + + K K + + + E + S D
Sbjct: 345 -VSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNN 403
Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTC 167
+ + ++ L + D + + E+K++ + +
Sbjct: 404 KPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVN 450
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 34.2 bits (77), Expect = 0.090
Identities = 49/320 (15%), Positives = 86/320 (26%), Gaps = 43/320 (13%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLE-RRHVLGGAAVTEEI---------------------I 39
AG GLV+ L RAG V +LE + +GG T +
Sbjct: 52 AGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRL 111
Query: 40 PGFQFSRASYLLSL---LRPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTL 96
P F + + L R D++ + + WTN A S
Sbjct: 112 PSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEF 171
Query: 97 GLDPQK-------NYEQIARFSVKDAQNF--EKYDHHIEEITNLLDPLFDIAPHDFGNLL 147
++ N EQ+ R + E + E + + + A +
Sbjct: 172 KEPDKRNHTWIRTNREQVRRAQYATDPSSINEGFHLTGCETRLTVSDMVNQALEPVRDYY 231
Query: 148 MYNLFTRRGEMKDVYSLLTCSAFSI--LNDWFESEPLKATLLTDGLIGAMVSPHSPSTSY 205
K L A + + + L+ + TS
Sbjct: 232 SVKQDDGTRVNKPFKEWLAGWADVVRDFDGYSMGRFLREYAEFSDEAVEAIGTIENMTSR 291
Query: 206 V---LLHHVMGGAEGVKGA-WAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSD 261
+ H +G ++ A + EGG + + LA+ Q+ Q + +
Sbjct: 292 LHLAFFHSFLGRSDIDPRATYWEIEGGSRMLPETLAKDL---RDQIVMGQRMVRLEYYDP 348
Query: 262 KRASGVVTNGLEIKAKYVLS 281
R +
Sbjct: 349 GRDGHHGELTGPGGPAVAIQ 368
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 34.3 bits (79), Expect = 0.094
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR 26
AG +GL+ L +AG+ +LER+
Sbjct: 10 AGPSGLLLGQLLHKAGIDNVILERQ 34
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 34.4 bits (80), Expect = 0.098
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 233 SQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLS------NTT-A 285
SQ L + + + T + V + + + + V+T+ + A V+ NT A
Sbjct: 205 SQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARVITDKRTLDADLVILAAGVSPNTQLA 263
Query: 286 KCTLLDLIPKG 296
+ L+L P+G
Sbjct: 264 RDAGLELDPRG 274
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 34.3 bits (79), Expect = 0.10
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR 26
G GL+ A L G+ VLE+
Sbjct: 57 GGPVGLMLAGELRAGGVGALVLEKL 81
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 34.3 bits (79), Expect = 0.10
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR 26
AG GL +A +LAR G+ V V+ERR
Sbjct: 13 AGLGGLSTAMFLARQGVRVLVVERR 37
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 34.0 bits (78), Expect = 0.10
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Query: 214 GAEGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN 270
G V+GA G V R A +G + + V + L G+
Sbjct: 162 GVGDVEGAVLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPR-VELGIEGE 220
Query: 271 GLEIKAKYVLSNTTAK 286
L + + +
Sbjct: 221 PLPWQEARASAAVLSD 236
Score = 30.5 bits (69), Expect = 1.2
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 9 SAAY-LA-RAGLSVAVLERRHVLGGAA 33
+AAY L +G SV V++ H G
Sbjct: 37 AAAYYLKVWSGGSVLVVDAGHAPGSGD 63
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 34.3 bits (79), Expect = 0.11
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR 26
G G+ A LA + V+E+
Sbjct: 34 GGPVGMALALDLAHRQVGHLVVEQT 58
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 34.3 bits (78), Expect = 0.12
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 6 GLVSAAYLARAGLSVAVLER 25
VSA L AG+ +LE
Sbjct: 17 AAVSALRLGEAGVQTLMLEM 36
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 34.0 bits (77), Expect = 0.12
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 2 AGHNGLVSAAYLA-RAGLSVAVLERRHVLGGAAVTE 36
+G GL A +A + V VLERR +GG A +E
Sbjct: 15 SGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSE 50
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 33.9 bits (78), Expect = 0.14
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34
AG G ++ +AG +V ++++ GG ++
Sbjct: 129 AGSAGFNASLAAKKAGANVILVDKAPFSGGNSM 161
Score = 32.7 bits (75), Expect = 0.32
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 206 VLLHHVMG-GAEGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSD 261
L + G V P GG + L ++A+ G + V ++ ++ D
Sbjct: 223 ANLDDLKRSGGARVDRTH-RPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD 281
Query: 262 KRASGVV-----TNGLEIKAKYV 279
G V T I AK V
Sbjct: 282 HSVVGAVVHGKHTGYYMIGAKSV 304
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 33.3 bits (77), Expect = 0.17
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG--AAV--TEEI--IPGF 42
AG GL + Y+ GLS ++ GG A+ + I + GF
Sbjct: 13 AGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGF 59
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 33.7 bits (76), Expect = 0.18
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEE 37
+G +GL +A L G+ V +LE R +GG T
Sbjct: 115 SGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR 150
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 33.3 bits (76), Expect = 0.22
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 2 AGHNGLVSAAYLARAG-LSVAVLERRHVLGGAAVTEEIIPGF 42
AG + A++LAR G + + E++ +GG + +E IP F
Sbjct: 195 AGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE--IPQF 234
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 32.9 bits (76), Expect = 0.24
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG--AAV--TEEI--IPGF 42
G GL +A Y SV ++E LGG +A+ + I + GF
Sbjct: 15 GGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGF 61
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 33.1 bits (76), Expect = 0.25
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
+G G +A +G V ++E+ V+GG
Sbjct: 134 SGGAGFSAAISATDSGAKVILIEKEPVIGG 163
Score = 29.3 bits (66), Expect = 3.5
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 225 PEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-----TNGLEIKA 276
P GG G V Q L +A L + E+ D G++ +KA
Sbjct: 247 PTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKA 306
Query: 277 KYVL 280
V+
Sbjct: 307 DAVI 310
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 32.7 bits (75), Expect = 0.28
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
G G+ ++ ARAG V VLER GG
Sbjct: 49 YGIAGVAASIEAARAGADVLVLERTSGWGG 78
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 32.8 bits (75), Expect = 0.30
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 224 YPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-----TNGLEIK 275
P GG G V+Q L +A G + + V I D+ + +GV+ T IK
Sbjct: 246 RPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIK 305
Query: 276 AKYV 279
A V
Sbjct: 306 ADAV 309
Score = 32.0 bits (73), Expect = 0.46
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
+G GL +A AG V +LE+ + GG
Sbjct: 134 SGGAGLAAAVSARDAGAKVILLEKEPIPGG 163
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 32.2 bits (73), Expect = 0.37
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 2 AGHNGLVSAAYLARAGL--SVAVLERRHVLGG 31
AG +GLV+A L V + ERR GG
Sbjct: 14 AGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 32.1 bits (73), Expect = 0.42
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGA 32
AG G+ A L G++ ++ + +G +
Sbjct: 12 AGAAGIGMAITLKDFGITDVIILEKGTVGHS 42
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 29.7 bits (67), Expect = 0.44
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 410 RDWTEEDKANYATNVFSSIEQYCPGFTQ-DIVGYEI--LTPPDLEKEFGLT 457
W+ ++ + ++QY F + I G ++ +T +L ++ G++
Sbjct: 9 SKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQEL-EDLGVS 58
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 31.9 bits (73), Expect = 0.49
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG--AAV--TEEI--IPGF 42
G G+ +A +S ++E LGG AA+ + I + GF
Sbjct: 22 GGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGF 68
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm,
membrane, sensory transduction, vision, signaling
protein; 1.90A {Drosophila melanogaster}
Length = 78
Score = 29.4 bits (66), Expect = 0.53
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 410 RDWTEEDKANYATNVFSSIEQYCPGFTQ-DIVGYEI--LTPPDLEKEFGLT 457
WT D + QY F Q DI G + +T L + G+T
Sbjct: 4 YLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSL-QRMGVT 53
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 32.0 bits (72), Expect = 0.56
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 17/62 (27%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
AG GL +A LA G V ++E+R +FSR + L L P D
Sbjct: 100 AGPCGLRAAVELALLGARVVLVEKRI---------------KFSRHNVL--HLWPFTIHD 142
Query: 62 LE 63
L
Sbjct: 143 LR 144
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 31.7 bits (71), Expect = 0.58
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLER 25
+G G A L AG VA+ +
Sbjct: 54 SGPIGCTYARELVGAGYKVAMFDI 77
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 31.6 bits (72), Expect = 0.66
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 6 GLVSAAYLARAGLSVAVLERR 26
GL A L + G+ V+V ER
Sbjct: 38 GLTMAKLLQQNGIDVSVYERD 58
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain complex,
cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 28.9 bits (65), Expect = 0.72
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 410 RDWTEEDKANYATNVFSSIEQYCPGFTQ-DIVGYEI--LTPPDLEKEFGLT 457
W+ ++ + ++QY F + I G ++ +T +L ++ G++
Sbjct: 5 SKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQEL-EDLGVS 54
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 31.5 bits (71), Expect = 0.74
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEE 37
AG GL +A +R+G V +L+ R GG +
Sbjct: 136 AGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTA 171
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 31.2 bits (70), Expect = 0.92
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERR 26
+G GL SA LAR G SV +L R
Sbjct: 14 SGVIGLSSALILARKGYSVHILARD 38
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 31.0 bits (71), Expect = 0.93
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVL 280
AL + G ++ T+ V I ++ + + ++ G ++ +V+
Sbjct: 138 DALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVV 184
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 30.7 bits (70), Expect = 1.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
G G +AYL G +++R LGG
Sbjct: 51 GGAAGRFGSAYLRAMGGRQLIVDRWPFLGG 80
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 30.6 bits (70), Expect = 1.3
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGA-AVTEEI--IPGF 42
GL +A Y RA LS +LE + + GG A +EE+ PGF
Sbjct: 20 GLTAAIYTGRAQLSTLILE-KGMPGGQIAWSEEVENFPGF 58
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 30.6 bits (70), Expect = 1.3
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 233 SQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLS------NTT-A 285
++ + + A ++ T++ V ++R V T+ KA VL NT
Sbjct: 230 AEYIYKEADKHHIEILTNENVKAF--KGNERVEAVETDKGTYKADLVLVSVGVKPNTDFL 287
Query: 286 KCTLLDLIPKG 296
+ T + KG
Sbjct: 288 EGTNIRTNHKG 298
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase,
NADP+ B reduced izoalloxazine bending, oxidoreductase;
HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 30.5 bits (70), Expect = 1.4
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGA-AVTEEI--IPGF 42
GL + Y R G+ AVL + + GG + EI PG
Sbjct: 13 GLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGV 52
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2ykr_I 3fih_I* 3iy8_I 2wwl_I 3oar_I 3oaq_I
3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I
2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I ...
Length = 127
Score = 29.4 bits (67), Expect = 1.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 13/36 (36%)
Query: 45 SRASYLLSL---LRPHIYKDLELKKHGLKLLTRDPR 77
+RA L+ LR EL+K G +TRD R
Sbjct: 81 TRA--LMEYDESLRS------ELRKAGF--VTRDAR 106
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 30.6 bits (70), Expect = 1.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
AG +GL + L G SV V+E +GG
Sbjct: 24 AGFSGLYALYRLRELGRSVHVIETAGDVGG 53
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 30.6 bits (68), Expect = 1.5
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRH 27
AG GL +L + + V V R
Sbjct: 30 AGTAGLHLGLFLRQHDVDVTVYTDRK 55
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding,
rRNA-binding, metal-binding, zinc-finger, translation;
HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1
PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I*
1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I
1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I
...
Length = 128
Score = 29.0 bits (66), Expect = 1.5
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 13/36 (36%)
Query: 45 SRASYLLSL---LRPHIYKDLELKKHGLKLLTRDPR 77
+RA L+ R +LK G LTRD R
Sbjct: 82 ARA--LVQYNPDYRA------KLKPLGF--LTRDAR 107
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer,
SAM domain complex, cytoplasm, membrane; 2.00A
{Drosophila melanogaster}
Length = 106
Score = 28.8 bits (64), Expect = 1.6
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 410 RDWTEEDKANYATNVFSSIEQYCPGFTQ-DIVGYEI--LTPPDLEKEFGLT 457
WT D + QY F Q DI G + +T L + G+T
Sbjct: 24 YLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSL-QRMGVT 73
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 29.2 bits (66), Expect = 1.8
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
P TK L+++ + PN
Sbjct: 98 KPCTKTCQVLEALNVLVNRPNI 119
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 29.2 bits (66), Expect = 1.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
P TK + ++S+ + DP P
Sbjct: 96 KPATKTDQVIQSLIALVNDPQP 117
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 30.0 bits (68), Expect = 2.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 2 AGHNGLVSAAYLARAGL-SVAVLERRHVLG--GAAV 34
AG GL A L +AG+ V +LE + G +
Sbjct: 12 AGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGI 47
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_I
Length = 145
Score = 28.8 bits (65), Expect = 2.1
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 45 SRA------SYLLSLLRPHIYKDLELKKHGLKLLTRDPR 77
S+ Y+ + I + L L L DPR
Sbjct: 88 SKGIVAYHAKYVDENSKREIKEQLMQYDRSL--LVADPR 124
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 29.9 bits (68), Expect = 2.2
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
AG GL + GL+V E +GG
Sbjct: 29 AGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 30.0 bits (67), Expect = 2.2
Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 12/69 (17%)
Query: 2 AGHNGLVSAAYLARA------GLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLR 55
AG +G+ A + E++ GG +
Sbjct: 10 AGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPV------H 63
Query: 56 PHIYKDLEL 64
+Y+ L
Sbjct: 64 SSMYRYLWS 72
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 146
Score = 28.8 bits (65), Expect = 2.3
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 45 SRA------SYLLSLLRPHIYKDLELKKHGLKLLTRDPR 77
S+A Y+ + I L L L DPR
Sbjct: 89 SKALVAYYQKYVDEASKKEIKDILIQYDRTL--LVADPR 125
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 29.7 bits (66), Expect = 2.5
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 2 AGHNGLVSAAYLARA--GLSVAVLERRHVL--GGAAVTEEIIPGFQFSRASYLLSLLR-- 55
AG GLV A+ L +A ++ ++E+ G V PG + L
Sbjct: 8 AGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERL 67
Query: 56 -PHIYKDLELKKHGLKLLTRDPRSYTPLS 83
P +D +L H L +
Sbjct: 68 NPQFLEDFKLVHHNEPSLMSTGVLLCGVE 96
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 29.5 bits (66), Expect = 2.6
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG----AAVTEEIIPGFQFSRASYLLSLLRPH 57
G G+ AA + L+VA++E R LGG + +E L+ L +
Sbjct: 116 GGPAGI-GAALELQQYLTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKLNEN 174
Query: 58 I 58
Sbjct: 175 T 175
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 29.5 bits (67), Expect = 2.9
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPH 57
G+ GL +AA L + G++V +LE + E + + + + R H
Sbjct: 160 GGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEAL--------SEFYQAEHRAH 207
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 29.6 bits (67), Expect = 3.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPG 41
GL +A L G V + E LGG E +PG
Sbjct: 403 GLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPG 438
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 28.4 bits (64), Expect = 3.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
PV IN + + +PNP
Sbjct: 97 KPVLTINSIIYGLQYLFLEPNP 118
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 29.6 bits (67), Expect = 3.2
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
AG GL A A G V + + +GG + IPG + LR Y
Sbjct: 381 AGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKE-----EFYETLR---YYR 432
Query: 62 LELKKHGLKL 71
++ G+ L
Sbjct: 433 RMIEVTGVTL 442
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid,
thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A
{Campylobacter jejuni}
Length = 315
Score = 29.0 bits (66), Expect = 3.4
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGA-AVTEEI--IPGF 42
GL + Y R GL V+ + + GG + EI PG
Sbjct: 16 GLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYPGV 55
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 149
Score = 28.4 bits (64), Expect = 3.5
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 8/39 (20%)
Query: 45 SRA------SYLLSLLRPHIYKDLELKKHGLKLLTRDPR 77
++A Y+ + + L L DPR
Sbjct: 92 AKALVAYYQKYVDEASKKEVKDIFARYDRTL--LVADPR 128
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 29.1 bits (66), Expect = 3.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
AG G+ A + +AG+ V +E +GG
Sbjct: 17 AGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 197
Score = 28.6 bits (64), Expect = 3.9
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 13/36 (36%)
Query: 45 SRASYLLSL---LRPHIYKDLELKKHGLKLLTRDPR 77
+RA LL + R LK+ GL LTRD R
Sbjct: 151 ARA--LLKVSASHRA------PLKQEGL--LTRDSR 176
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 29.2 bits (66), Expect = 4.1
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 19/77 (24%)
Query: 216 EGVKGAWAYPEGGMGAVSQ--------ALARSAQASGAQLFTSQTVTEITLDSDKRASGV 267
EG+KGA Y + + + A GA L + + D+
Sbjct: 172 EGLKGAGVYLDF------RNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVK 225
Query: 268 VTNGL-----EIKAKYV 279
+ L EIKAK V
Sbjct: 226 ARDLLTDEVIEIKAKLV 242
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 29.0 bits (65), Expect = 4.4
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 17/98 (17%)
Query: 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN----------------GL 272
+G + + A+A G +++ EI D G+ TN GL
Sbjct: 143 LGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGL 202
Query: 273 EIKAKYVLSNTTAKCTLLD-LIPKGNLDERTTQAVQSI 309
E+ AK + L L K +L I
Sbjct: 203 ELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGI 240
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 29.3 bits (66), Expect = 4.4
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPG 41
G +A L +G +V + + +GG +PG
Sbjct: 401 GSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPG 436
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 29.0 bits (66), Expect = 4.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
+G + +A G V ++E R +GG
Sbjct: 12 SGGAAMAAALKAVEQGAQVTLIE-RGTIGG 40
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 29.0 bits (66), Expect = 4.6
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 251 QTVTEITLDSDKRASGVVTN-GLEIKAKYV 279
Q V ++ ++ + R G VT GL+ +AK V
Sbjct: 145 QAVEDLIVE-NDRVVGAVTQMGLKFRAKAV 173
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 28.8 bits (65), Expect = 4.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 6 GLVSAAYLARAGLSVAVLER 25
GL +A L AG+ V V ER
Sbjct: 17 GLTAALMLRDAGVDVDVYER 36
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 28.7 bits (65), Expect = 4.9
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPH 57
GL AA +A + V +L+ + + +++ L R
Sbjct: 161 GLEVAATAIKANMHVTLLDTAARVLERVTAPPV--------SAFYEHLHREA 204
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER;
HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 28.5 bits (63), Expect = 4.9
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLG 30
AG GL +A + SV V
Sbjct: 8 AGVIGLSTALCIHERYHSVLQPLDIKVYA 36
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 28.1 bits (63), Expect = 5.0
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
PV IN + + +PNP
Sbjct: 117 KPVLTINSIIYGLQYLFLEPNP 138
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 29.0 bits (66), Expect = 5.1
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 251 QTVTEITLDSDKRASGVVTN-GLEIKAKYV 279
TV ++ + + S V G I+AK
Sbjct: 138 DTVIGVSAN-SGKFSSVTVRSGRAIQAKAA 166
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 29.0 bits (66), Expect = 5.1
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 251 QTVTEITLDSDKRASGVVTN-GLEIKAKYV 279
+ V +I + + + GV TN G+E K K V
Sbjct: 144 EEVVDIIVK-NNQVVGVRTNLGVEYKTKAV 172
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 28.2 bits (63), Expect = 5.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
SPV + AL S+ L P P
Sbjct: 97 SPVITLKSALISLQALLQSPEP 118
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 28.7 bits (65), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
AG G A LA+A +V + + + LGG
Sbjct: 12 AGGAGYHGAFRLAKAKYNVLMADPKGELGG 41
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 27.6 bits (62), Expect = 5.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
SPV + AL S+ L P P
Sbjct: 96 SPVITLKSALISLQALLQSPEP 117
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 28.2 bits (63), Expect = 5.3
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
SP + + + +PNP
Sbjct: 126 SPALDLQSIITGLLFLFLEPNP 147
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 27.8 bits (62), Expect = 6.0
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
+PV + + ++ L +P
Sbjct: 114 TPVWDLLHCVHAVWRLLREPVC 135
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 28.6 bits (65), Expect = 6.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLG 30
AG GL AA LA+ G SV V + +G
Sbjct: 12 AGAAGLFCAAQLAKLGKSVTVFDNGKKIG 40
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 28.3 bits (64), Expect = 6.2
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPH 57
G GL AA AG+ V+++E + L A + A ++
Sbjct: 153 GGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATL--------ADFVARYHAAQ 200
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE,
phosphoenolpyruvate:carbohydrate system, P-
phosphorylation; HET: MSE; 1.30A {Streptococcus
pneumoniae}
Length = 108
Score = 27.1 bits (60), Expect = 6.7
Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 30 GGAAVTEEIIPGFQFSRASYLLSLLRPHI---YKDLE--LKKHGLKLLTRDPRSYTPLSP 84
G +I+ + L +L P + Y++++ ++ G++++ Y L+
Sbjct: 42 GAYGAHYDIMGVYD-------LIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTK 94
Query: 85 D 85
Sbjct: 95 S 95
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 28.4 bits (64), Expect = 6.8
Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 20/82 (24%)
Query: 216 EGVKGAWAYPEGGMGAVSQ--------ALARSAQASGAQLFTSQTVTEITLDSDKRASGV 267
E +KG Y E + + + A A GA V D K V
Sbjct: 154 ENLKGGGIYVEY------RTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVV 207
Query: 268 VTNGL-----EIKAKYVLSNTT 284
+ L I AK V+ N
Sbjct: 208 AKDRLTDTTHTIYAKKVV-NAA 228
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 27.7 bits (62), Expect = 7.0
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
P I L SI +++PNP
Sbjct: 101 RPSLNIATVLTSIQLLMSEPNP 122
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 28.2 bits (64), Expect = 7.6
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 233 SQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVL 280
+ +S + +TV I + + T+ EI +
Sbjct: 192 VAEVQKSLEKQAVIFHFEETVLGI--EETANGIVLETSEQEISCDSGI 237
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 27.2 bits (61), Expect = 7.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
SP I+ L SI + L DPNP
Sbjct: 97 SPALTISKVLLSICSLLCDPNP 118
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L)
stereospecific opine dehydrogenase, oxidoreductase;
1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 28.1 bits (62), Expect = 7.8
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI 38
G+ G AAYLA G SV + A +EI
Sbjct: 12 LGNGGHAFAAYLALKGQSVLAWDID-----AQRIKEI 43
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 27.2 bits (61), Expect = 8.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
SP +I L SI LA PNP
Sbjct: 98 SPALQIRTVLLSIQALLASPNP 119
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 28.0 bits (62), Expect = 8.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
+ + L S+ LA P
Sbjct: 154 AAAMTLRTVLLSLQALLAAAEP 175
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 27.8 bits (63), Expect = 8.5
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLG 30
AG G++ A + G V V++ G
Sbjct: 35 AGAAGMMCAIEAGKRGRRVLVIDHARAPG 63
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 27.3 bits (61), Expect = 8.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
SP I+ L SI + L DPNP
Sbjct: 112 SPALTISKVLLSICSLLCDPNP 133
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 27.9 bits (63), Expect = 8.7
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPH 57
AG GL AA GL V V+E + VT EI +SY
Sbjct: 150 AGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEI--------SSYFHDRHSGA 197
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 27.2 bits (61), Expect = 8.9
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
+ + L S+ LA P
Sbjct: 105 AAAMTLRTVLLSLQALLAAAEP 126
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 27.9 bits (63), Expect = 9.4
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 6 GLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPH 57
G A + GLSV +LE L + I ++L LL
Sbjct: 155 GCEVATTARKLGLSVTILEAGDELLVRVLGRRI--------GAWLRGLLTEL 198
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 27.3 bits (61), Expect = 9.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
SP I+ L SI + L DPNP
Sbjct: 114 SPALTISKVLLSISSLLTDPNP 135
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 27.4 bits (61), Expect = 9.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
SP I+ L SI + L D NP
Sbjct: 141 SPALTISKVLLSICSLLTDCNP 162
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 27.4 bits (61), Expect = 9.5
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 313 SPVTKINVALKSIPNFLADPNP 334
+ + L S+ LA P
Sbjct: 102 AAAMTLRTVLLSLQALLAAAEP 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,177,939
Number of extensions: 498355
Number of successful extensions: 1547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1513
Number of HSP's successfully gapped: 204
Length of query: 523
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 425
Effective length of database: 3,965,535
Effective search space: 1685352375
Effective search space used: 1685352375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)