BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8930
         (65 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8N3Y7|RDHE2_HUMAN Epidermal retinol dehydrogenase 2 OS=Homo sapiens GN=SDR16C5 PE=2
           SV=2
          Length = 309

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 2   PSLLGLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDFL 56
           PSLL +L PK A   I+ A  + +  + +P  L  +      +PLK   ++ D+L
Sbjct: 239 PSLLPILEPKYAVEKIVEAILQEKMYLYMPKLLYFMMFLKSFLPLKTGLLIADYL 293


>sp|A6W0Z9|HLDE_MARMS Bifunctional protein HldE OS=Marinomonas sp. (strain MWYL1) GN=hldE
           PE=3 SV=1
          Length = 475

 Score = 30.8 bits (68), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 5   LGLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDFLDSGVDSD 63
            G+LSPKD    I  AQ  GE ++   NG   + +   +  +K A+ L D L   V++D
Sbjct: 322 FGVLSPKDLLEQIKLAQMNGE-KIVFTNGCFDILHPGHIAYMKQAKALGDRLIVAVNTD 379


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.141    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,695,414
Number of Sequences: 539616
Number of extensions: 747046
Number of successful extensions: 1896
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1894
Number of HSP's gapped (non-prelim): 3
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)