Query psy8930
Match_columns 65
No_of_seqs 140 out of 1003
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 23:06:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1201|consensus 99.2 6.8E-11 1.5E-15 75.3 6.8 61 1-61 233-293 (300)
2 PRK07904 short chain dehydroge 98.1 1.3E-05 2.7E-10 49.4 5.8 45 7-51 206-250 (253)
3 PRK06101 short chain dehydroge 98.0 2.7E-05 5.8E-10 47.3 6.5 47 7-53 189-235 (240)
4 PRK07825 short chain dehydroge 97.9 8.4E-05 1.8E-09 45.8 7.0 54 5-58 197-250 (273)
5 PRK08251 short chain dehydroge 97.9 5.4E-05 1.2E-09 45.8 5.8 46 7-52 201-247 (248)
6 PRK07102 short chain dehydroge 97.9 5.2E-05 1.1E-09 45.9 5.7 46 6-51 195-240 (243)
7 PRK07024 short chain dehydroge 97.8 0.00015 3.2E-09 44.4 6.9 48 8-55 200-247 (257)
8 PRK06139 short chain dehydroge 97.8 0.00015 3.2E-09 46.7 6.5 51 6-56 211-261 (330)
9 PRK12367 short chain dehydroge 97.7 1.9E-05 4.2E-10 48.7 2.1 47 7-53 195-242 (245)
10 PRK05866 short chain dehydroge 97.7 0.00017 3.6E-09 45.4 6.3 49 5-54 239-287 (293)
11 PRK05855 short chain dehydroge 97.7 0.00016 3.5E-09 48.2 6.4 46 7-52 531-576 (582)
12 PRK05993 short chain dehydroge 97.7 0.00016 3.5E-09 44.8 6.1 47 7-53 225-273 (277)
13 PRK09072 short chain dehydroge 97.7 0.00025 5.4E-09 43.4 6.3 50 6-55 204-253 (263)
14 PRK07832 short chain dehydroge 97.7 0.00023 5.1E-09 43.9 6.2 49 6-54 214-262 (272)
15 COG0300 DltE Short-chain dehyd 97.7 0.00022 4.7E-09 45.3 6.0 49 6-54 209-257 (265)
16 PRK07424 bifunctional sterol d 97.6 0.00032 7E-09 46.7 6.2 47 6-52 354-401 (406)
17 PRK05599 hypothetical protein; 97.6 0.00022 4.8E-09 43.6 4.9 45 8-52 198-244 (246)
18 PRK05872 short chain dehydroge 97.4 0.00053 1.2E-08 43.0 5.5 47 6-52 217-263 (296)
19 PRK05650 short chain dehydroge 97.3 0.0015 3.2E-08 40.2 6.4 48 7-54 209-256 (270)
20 PLN02780 ketoreductase/ oxidor 97.2 0.0012 2.6E-08 42.3 5.6 45 7-53 255-300 (320)
21 PRK07109 short chain dehydroge 97.2 0.0021 4.6E-08 41.3 6.7 49 6-54 213-261 (334)
22 PRK07201 short chain dehydroge 96.9 0.0049 1.1E-07 42.3 6.6 49 6-55 570-618 (657)
23 PRK06182 short chain dehydroge 96.9 0.006 1.3E-07 37.6 6.3 48 7-54 220-269 (273)
24 PRK08017 oxidoreductase; Provi 96.8 0.0048 1E-07 37.4 5.3 46 7-52 206-253 (256)
25 PRK06181 short chain dehydroge 96.6 0.013 2.9E-07 35.7 6.4 50 6-55 208-257 (263)
26 PRK05693 short chain dehydroge 96.6 0.014 3E-07 36.0 6.4 46 7-52 216-263 (274)
27 PRK08267 short chain dehydroge 96.0 0.041 8.8E-07 33.5 6.2 50 7-56 205-255 (260)
28 PRK06179 short chain dehydroge 96.0 0.043 9.4E-07 33.6 6.3 51 7-57 214-267 (270)
29 PRK06914 short chain dehydroge 95.9 0.041 8.9E-07 33.9 5.8 49 7-55 226-277 (280)
30 PRK08264 short chain dehydroge 95.1 0.099 2.2E-06 31.3 5.3 43 6-48 190-232 (238)
31 PRK05876 short chain dehydroge 91.5 0.41 8.9E-06 29.8 3.9 23 7-29 223-245 (275)
32 KOG1210|consensus 79.8 8.2 0.00018 25.6 5.2 41 7-47 243-284 (331)
33 PRK06194 hypothetical protein; 79.7 3.4 7.3E-05 25.5 3.4 26 7-32 236-261 (287)
34 PRK07666 fabG 3-ketoacyl-(acyl 62.6 14 0.0003 22.0 3.3 22 7-28 207-228 (239)
35 PLN02538 2,3-bisphosphoglycera 61.3 12 0.00027 26.5 3.2 25 5-29 400-424 (558)
36 cd03527 RuBisCO_small Ribulose 61.3 15 0.00032 20.2 2.9 24 4-27 8-31 (99)
37 PF11573 Med23: Mediator compl 60.9 30 0.00065 27.2 5.2 48 7-54 1146-1196(1341)
38 PF08383 Maf_N: Maf N-terminal 52.7 14 0.00031 16.5 1.6 12 7-18 22-33 (35)
39 COG4746 Uncharacterized protei 49.6 22 0.00049 18.8 2.3 16 5-20 62-77 (80)
40 TIGR01307 pgm_bpd_ind 2,3-bisp 48.8 26 0.00055 24.6 3.1 23 5-27 361-383 (501)
41 PF00101 RuBisCO_small: Ribulo 48.1 32 0.0007 18.9 2.9 24 4-27 7-30 (99)
42 PF02022 Integrase_Zn: Integra 47.0 21 0.00044 16.4 1.7 11 10-20 22-32 (40)
43 COG4221 Short-chain alcohol de 46.0 26 0.00056 22.4 2.6 22 6-27 211-232 (246)
44 CHL00130 rbcS ribulose-1,5-bis 45.5 36 0.00079 19.9 2.9 23 4-26 10-32 (138)
45 PRK07454 short chain dehydroge 44.9 32 0.00069 20.5 2.8 22 6-27 206-227 (241)
46 COG4989 Predicted oxidoreducta 44.0 39 0.00085 22.1 3.2 39 6-47 131-174 (298)
47 PF12229 PG_binding_4: Putativ 43.6 36 0.00078 17.7 2.7 22 7-28 92-113 (114)
48 KOG4288|consensus 42.9 27 0.00059 22.6 2.3 23 4-26 243-265 (283)
49 PF06497 DUF1098: Protein of u 42.3 59 0.0013 17.8 3.6 29 11-40 56-84 (95)
50 PF02966 DIM1: Mitosis protein 41.7 44 0.00094 19.5 2.9 21 12-32 111-131 (133)
51 PRK08219 short chain dehydroge 41.2 35 0.00076 19.9 2.6 20 7-26 195-214 (227)
52 PF12870 Lumazine_bd: Lumazine 40.4 29 0.00064 17.9 2.0 21 7-27 6-26 (111)
53 TIGR00589 ogt O-6-methylguanin 40.4 25 0.00053 18.4 1.6 21 13-33 34-54 (80)
54 COG3246 Uncharacterized conser 40.3 51 0.0011 21.7 3.3 24 7-30 25-48 (298)
55 TIGR01500 sepiapter_red sepiap 40.2 37 0.0008 20.5 2.6 18 7-24 227-244 (256)
56 PF06933 SSP160: Special lobe- 38.1 55 0.0012 23.0 3.4 31 11-41 422-452 (756)
57 PF11453 DUF2950: Protein of u 37.7 37 0.0008 22.0 2.4 19 8-26 5-23 (271)
58 KOG1205|consensus 37.5 34 0.00074 22.2 2.2 41 10-50 227-268 (282)
59 PF02575 YbaB_DNA_bd: YbaB/Ebf 37.1 44 0.00096 17.4 2.3 22 3-24 50-71 (93)
60 cd02903 Macro_BAL_like Macro d 36.1 45 0.00098 18.8 2.4 17 7-23 120-136 (137)
61 KOG4169|consensus 35.9 47 0.001 21.4 2.6 23 5-27 213-235 (261)
62 COG0074 SucD Succinyl-CoA synt 35.7 53 0.0011 21.6 2.9 22 8-29 73-94 (293)
63 TIGR02399 salt_tol_Pase glucos 35.5 36 0.00077 23.1 2.1 26 2-27 127-152 (389)
64 PRK00131 aroK shikimate kinase 34.6 48 0.0011 18.5 2.4 16 7-22 155-170 (175)
65 PRK07578 short chain dehydroge 34.5 54 0.0012 18.9 2.6 19 6-24 172-190 (199)
66 cd06445 ATase The DNA repair p 34.1 34 0.00075 17.5 1.6 21 13-33 32-52 (79)
67 PF05853 DUF849: Prokaryotic p 34.0 57 0.0012 20.8 2.8 25 7-31 22-46 (272)
68 PF13580 SIS_2: SIS domain; PD 33.7 68 0.0015 18.0 2.9 21 11-31 22-42 (138)
69 PRK08309 short chain dehydroge 33.6 71 0.0015 18.9 3.0 23 8-30 149-171 (177)
70 PF15565 Imm16: Immunity prote 33.5 91 0.002 17.3 3.7 47 12-58 48-95 (106)
71 PF05189 RTC_insert: RNA 3'-te 33.3 63 0.0014 17.2 2.6 18 6-23 81-98 (103)
72 cd07491 Peptidases_S8_7 Peptid 32.8 72 0.0016 19.8 3.1 27 7-33 85-111 (247)
73 PF13460 NAD_binding_10: NADH( 32.6 32 0.0007 19.5 1.5 18 5-22 165-182 (183)
74 PF04316 FlgM: Anti-sigma-28 f 32.3 50 0.0011 15.9 1.9 14 7-20 43-56 (57)
75 PRK08575 5-methyltetrahydropte 32.3 93 0.002 20.3 3.6 38 7-49 272-309 (326)
76 PF09506 Salt_tol_Pase: Glucos 32.3 46 0.00099 22.6 2.2 26 2-27 121-146 (381)
77 PRK08263 short chain dehydroge 32.3 54 0.0012 20.0 2.5 18 8-25 218-235 (275)
78 PF01035 DNA_binding_1: 6-O-me 31.9 28 0.0006 18.2 1.0 21 13-33 34-54 (85)
79 COG2892 Uncharacterized protei 31.8 43 0.00093 17.9 1.7 17 8-24 10-26 (82)
80 COG1595 RpoE DNA-directed RNA 31.3 82 0.0018 18.2 3.1 44 9-54 41-84 (182)
81 TIGR00275 flavoprotein, HI0933 31.2 1.6E+02 0.0035 19.5 5.5 48 4-58 261-308 (400)
82 cd03562 CID CID (CTD-Interacti 31.1 62 0.0013 17.4 2.4 46 12-57 59-104 (114)
83 PHA02891 hypothetical protein; 30.6 45 0.00097 18.6 1.7 28 36-63 79-106 (120)
84 PF05418 Apo-VLDL-II: Apovitel 30.3 54 0.0012 17.3 1.9 17 7-23 12-28 (82)
85 PF09702 Cas_Csa5: CRISPR-asso 29.5 69 0.0015 17.9 2.3 16 7-22 17-32 (105)
86 COG1060 ThiH Thiamine biosynth 29.2 92 0.002 21.0 3.3 24 7-30 89-112 (370)
87 PLN02289 ribulose-bisphosphate 29.1 86 0.0019 19.1 2.8 21 4-24 72-92 (176)
88 PF06057 VirJ: Bacterial virul 29.0 1.4E+02 0.0031 18.3 4.5 49 6-54 43-99 (192)
89 PF10847 DUF2656: Protein of u 28.2 52 0.0011 19.1 1.7 23 6-28 51-73 (132)
90 KOG4062|consensus 27.9 70 0.0015 19.4 2.3 22 12-33 120-141 (178)
91 COG2908 Uncharacterized protei 27.8 90 0.002 19.9 2.9 27 9-35 52-78 (237)
92 PF03485 Arg_tRNA_synt_N: Argi 27.6 45 0.00098 17.1 1.4 19 8-26 51-69 (85)
93 PRK00901 methylated-DNA--prote 27.1 57 0.0012 19.2 1.8 22 12-33 104-125 (155)
94 PRK07023 short chain dehydroge 26.8 88 0.0019 18.6 2.7 19 7-25 213-231 (243)
95 PRK06180 short chain dehydroge 26.4 83 0.0018 19.3 2.6 20 7-26 221-240 (277)
96 PF07931 CPT: Chloramphenicol 26.2 38 0.00083 20.2 1.0 15 7-21 159-173 (174)
97 PRK10286 O-6-alkylguanine-DNA: 26.1 55 0.0012 19.7 1.7 21 13-33 120-140 (171)
98 cd02900 Macro_Appr_pase Macro 25.9 81 0.0018 19.1 2.4 18 6-23 167-184 (186)
99 PRK09009 C factor cell-cell si 25.7 78 0.0017 18.7 2.3 20 7-26 200-219 (235)
100 PF07747 MTH865: MTH865-like f 25.6 63 0.0014 16.9 1.6 16 5-20 57-72 (75)
101 PRK06924 short chain dehydroge 25.5 88 0.0019 18.6 2.5 18 7-24 220-237 (251)
102 COG5404 SulA SOS-response cell 25.4 1.1E+02 0.0023 18.3 2.7 28 7-34 94-121 (169)
103 PRK13669 hypothetical protein; 25.2 1.1E+02 0.0023 16.2 2.5 19 7-25 58-76 (78)
104 PF11305 DUF3107: Protein of u 25.2 1.1E+02 0.0025 15.9 3.2 21 7-27 19-39 (74)
105 PLN02455 fructose-bisphosphate 25.2 75 0.0016 21.5 2.3 24 8-32 238-261 (358)
106 COG2144 Selenophosphate synthe 25.1 41 0.00089 22.3 1.0 24 8-31 103-126 (324)
107 PF03447 NAD_binding_3: Homose 24.8 1E+02 0.0022 16.5 2.5 23 9-31 68-90 (117)
108 PLN00410 U5 snRNP protein, DIM 24.8 1.2E+02 0.0026 17.6 2.8 24 11-34 113-136 (142)
109 cd03330 Macro_2 Macro domain, 24.5 76 0.0016 17.5 2.0 16 7-22 118-133 (133)
110 TIGR00530 AGP_acyltrn 1-acyl-s 24.4 1.2E+02 0.0027 16.0 2.9 23 11-33 76-98 (130)
111 PRK13937 phosphoheptose isomer 24.4 1.2E+02 0.0025 18.0 2.9 22 11-32 25-46 (188)
112 PF03709 OKR_DC_1_N: Orn/Lys/A 24.2 97 0.0021 16.9 2.4 18 6-23 97-114 (115)
113 PF03486 HI0933_like: HI0933-l 24.1 2.4E+02 0.0052 19.1 5.8 48 4-58 268-315 (409)
114 PRK00414 gmhA phosphoheptose i 23.8 1.2E+02 0.0026 18.1 2.9 22 10-31 30-51 (192)
115 PTZ00019 fructose-bisphosphate 23.8 83 0.0018 21.3 2.3 21 7-27 235-255 (355)
116 TIGR03612 RutA pyrimidine util 23.2 1.3E+02 0.0027 19.8 3.1 23 7-29 305-328 (355)
117 PRK08278 short chain dehydroge 23.2 92 0.002 19.1 2.4 20 7-26 216-235 (273)
118 cd00948 FBP_aldolase_I_a Fruct 22.9 89 0.0019 20.9 2.3 21 7-27 230-250 (330)
119 PRK13975 thymidylate kinase; P 22.7 93 0.002 18.0 2.2 19 8-26 175-193 (196)
120 COG0696 GpmI Phosphoglyceromut 22.5 1.3E+02 0.0028 21.4 3.1 26 4-29 367-392 (509)
121 PLN02425 probable fructose-bis 22.5 90 0.0019 21.4 2.3 25 7-32 272-296 (390)
122 cd02907 Macro_Af1521_BAL_like 22.4 1E+02 0.0023 17.9 2.4 17 7-23 127-143 (175)
123 PRK05057 aroK shikimate kinase 22.3 1.1E+02 0.0024 17.7 2.5 18 7-24 155-172 (172)
124 PF01520 Amidase_3: N-acetylmu 22.2 88 0.0019 17.8 2.0 12 12-23 164-175 (175)
125 PLN02227 fructose-bisphosphate 22.2 91 0.002 21.4 2.3 25 7-32 281-305 (399)
126 PRK03887 methylated-DNA--prote 21.9 75 0.0016 19.3 1.7 21 13-33 123-143 (175)
127 TIGR03565 alk_sulf_monoox alka 21.8 1.5E+02 0.0033 19.3 3.2 25 7-31 303-327 (346)
128 cd05006 SIS_GmhA Phosphoheptos 21.6 1.4E+02 0.0031 17.2 2.9 22 11-32 20-41 (177)
129 PF14756 Pdase_C33_assoc: Pept 21.6 75 0.0016 18.3 1.6 16 7-22 94-109 (147)
130 PRK08508 biotin synthase; Prov 21.5 1.9E+02 0.0042 18.3 3.6 25 6-30 38-62 (279)
131 PF08401 DUF1738: Domain of un 21.3 1.1E+02 0.0023 17.1 2.2 23 11-33 6-28 (125)
132 PF08416 PTB: Phosphotyrosine- 21.3 48 0.001 18.8 0.8 17 7-23 107-123 (131)
133 TIGR00178 monomer_idh isocitra 21.2 1.2E+02 0.0027 22.3 2.8 28 6-33 517-544 (741)
134 cd02908 Macro_Appr_pase_like M 21.1 1.2E+02 0.0025 17.6 2.4 17 7-23 120-136 (165)
135 KOG4513|consensus 21.1 1E+02 0.0022 21.5 2.3 23 5-27 384-406 (531)
136 KOG3806|consensus 21.0 57 0.0012 19.9 1.0 23 5-29 98-120 (177)
137 KOG1557|consensus 20.9 1.1E+02 0.0024 20.6 2.4 22 6-27 241-262 (363)
138 PLN02956 PSII-Q subunit 20.9 1.4E+02 0.0031 18.3 2.7 15 4-18 76-90 (185)
139 TIGR03550 F420_cofG 7,8-dideme 20.4 1.9E+02 0.0042 18.7 3.5 25 7-31 34-58 (322)
140 COG4240 Predicted kinase [Gene 20.2 1.2E+02 0.0027 19.8 2.4 26 10-35 118-143 (300)
141 PF01202 SKI: Shikimate kinase 20.1 1.1E+02 0.0023 17.4 2.1 15 8-22 144-158 (158)
142 PRK03839 putative kinase; Prov 20.0 1.2E+02 0.0027 17.3 2.4 19 8-26 138-156 (180)
143 PRK13658 hypothetical protein; 20.0 1.1E+02 0.0024 15.2 1.8 12 6-17 2-13 (59)
No 1
>KOG1201|consensus
Probab=99.21 E-value=6.8e-11 Score=75.30 Aligned_cols=61 Identities=26% Similarity=0.414 Sum_probs=55.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHHhhcCCCC
Q psy8930 1 FPSLLGLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDFLDSGVD 61 (65)
Q Consensus 1 ~p~~~p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~~~~~~~~ 61 (65)
+|.++|.++|++||++|++|+++|+..+++|+++..+..+.+++|.++...+.+++|....
T Consensus 233 ~~~l~P~L~p~~va~~Iv~ai~~n~~~~~~P~~~~~~~~l~~~lP~~~~~l~~~F~~~~~~ 293 (300)
T KOG1201|consen 233 FPTLAPLLEPEYVAKRIVEAILTNQAGLLIPPFYYLFVPLLRLLPYKALLLMLDFSGTDHS 293 (300)
T ss_pred CccccCCCCHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHhhCCHHHHHHHHHHcCCCcc
Confidence 5788999999999999999999999999999999999999999999996566999988654
No 2
>PRK07904 short chain dehydrogenase; Provisional
Probab=98.10 E-value=1.3e-05 Score=49.38 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARI 51 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~ 51 (65)
.++||++|+.|++++.+++.+++.|..+.++..+.+++|.+++++
T Consensus 206 ~~~~~~~A~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 250 (253)
T PRK07904 206 TVDKEDVAKLAVTAVAKGKELVWAPPAFRYVMMVLRHIPRPIFRK 250 (253)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEChhHHHHHHHHHhCCHHHHhh
Confidence 579999999999999999999999999999999999999877664
No 3
>PRK06101 short chain dehydrogenase; Provisional
Probab=98.05 E-value=2.7e-05 Score=47.28 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILK 53 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~ 53 (65)
.++||++|+.+++++++++.++++|+.+.++....+++|..+...+.
T Consensus 189 ~~~~~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 235 (240)
T PRK06101 189 IITVEQASQEIRAQLARGKSHIYFPARFTWLIRLLGLLPYAWQGRLV 235 (240)
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEcChhHHHHHHHHHhCcHHHHHHHH
Confidence 47999999999999999999999999888888888999988776553
No 4
>PRK07825 short chain dehydrogenase; Provisional
Probab=97.91 E-value=8.4e-05 Score=45.77 Aligned_cols=54 Identities=26% Similarity=0.421 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHHhhcC
Q psy8930 5 LGLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDFLDS 58 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~~~~~ 58 (65)
.+.++|+++|+.+++++.+++..+.+|+.......+.+++|.++.+.+.+.+|.
T Consensus 197 ~~~~~~~~va~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 250 (273)
T PRK07825 197 FKNVEPEDVAAAIVGTVAKPRPEVRVPRALGPLAQAQRLLPRRVREALNRLLGG 250 (273)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEeccHHHHHHHHHHHhCcHHHHHHHHHHhcc
Confidence 367899999999999999999999999988888888999999999988777665
No 5
>PRK08251 short chain dehydrogenase; Provisional
Probab=97.89 E-value=5.4e-05 Score=45.82 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecchh-hHHHHHHHhhCcHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPNG-LLHVNNFCRLMPLKVARIL 52 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~~-~~~~~~l~~llP~~~~~~~ 52 (65)
.+++|++|+.|++++.+++..+++|.+ +..+..+.+++|.++++++
T Consensus 201 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 247 (248)
T PRK08251 201 MVDTETGVKALVKAIEKEPGRAAVPWWPWAPLGALMRVLPLRLVRKF 247 (248)
T ss_pred cCCHHHHHHHHHHHHhcCCCeEEcCcchHHHHHHHHHHCcHHHHHhh
Confidence 589999999999999999999999954 6778889999999887754
No 6
>PRK07102 short chain dehydrogenase; Provisional
Probab=97.89 E-value=5.2e-05 Score=45.90 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHH
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARI 51 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~ 51 (65)
...+||++|+.+++++.+++.+++.|+.+..+..+.+.+|.++.+.
T Consensus 195 ~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~ 240 (243)
T PRK07102 195 LTAQPEEVAKDIFRAIEKGKDVIYTPWFWRLIMLIIRSIPEPIFKR 240 (243)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEcCchHHHHHHHHHhCCHHHHhh
Confidence 3689999999999999999999999998888999999999887764
No 7
>PRK07024 short chain dehydrogenase; Provisional
Probab=97.82 E-value=0.00015 Score=44.38 Aligned_cols=48 Identities=21% Similarity=0.181 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHHh
Q psy8930 8 LSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDF 55 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~~ 55 (65)
++||++|+.+++++.+++..+++|+...+...+.+++|..++..+...
T Consensus 200 ~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 247 (257)
T PRK07024 200 MDADRFAARAARAIARGRRFRVIPWQMGVVAKLLRVLPRWLYDRLFAG 247 (257)
T ss_pred cCHHHHHHHHHHHHhCCCcEEECCchHHHHHHHHHHCcHHHHHHHHhh
Confidence 699999999999999999999999988888888999999887766443
No 8
>PRK06139 short chain dehydrogenase; Provisional
Probab=97.76 E-value=0.00015 Score=46.66 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHHhh
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDFL 56 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~~~ 56 (65)
|..+||++|+.+++++.+++.++++++....+..+.+++|..+.+.+.+++
T Consensus 211 ~~~~pe~vA~~il~~~~~~~~~~~~g~~~~~~~~~~~~~P~~~~~~~~~~~ 261 (330)
T PRK06139 211 PVYDPRRVAKAVVRLADRPRATTTVGAAARLARLAHFLAPGLTARLMGRLT 261 (330)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEcChHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 578999999999999999999999988888888899999986555554444
No 9
>PRK12367 short chain dehydrogenase; Provisional
Probab=97.74 E-value=1.9e-05 Score=48.74 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEe-cchhhHHHHHHHhhCcHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVA-VPNGLLHVNNFCRLMPLKVARILK 53 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~-iP~~~~~~~~l~~llP~~~~~~~~ 53 (65)
.++||++|+.|++++.+++.+++ .|+.+.++.+..+.+|.+++.++.
T Consensus 195 ~~~~~~vA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
T PRK12367 195 IMSADFVAKQILDQANLGLYLIIVTPNPLTYLLMPLTELGRRLYSRIL 242 (245)
T ss_pred CCCHHHHHHHHHHHHhcCCceEEEecCceeEEEeeHHHHHHHHHHHHH
Confidence 57999999999999999999765 588888888888999998887653
No 10
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.74 E-value=0.00017 Score=45.44 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHH
Q psy8930 5 LGLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKD 54 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~ 54 (65)
++.++||++|+.+++++.+++.++ +|+...+...+.+++|..+...+.+
T Consensus 239 ~~~~~pe~vA~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~ 287 (293)
T PRK05866 239 LPALTADEAAEWMVTAARTRPVRI-APRVAVAARALDSVAPRAVNALMQR 287 (293)
T ss_pred CCCCCHHHHHHHHHHHHhcCCeEE-cccHHHHHHHHHHhCcHHHHHHHHH
Confidence 356899999999999999887554 6887888888999999887776655
No 11
>PRK05855 short chain dehydrogenase; Validated
Probab=97.73 E-value=0.00016 Score=48.24 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARIL 52 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~ 52 (65)
..+||+||+.+++++.+++.++++|+.......+.+++|..++...
T Consensus 531 ~~~p~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 576 (582)
T PRK05855 531 GYGPEKVAKAIVDAVKRNKAVVPVTPEAHAGYGVSRFAPWLLRSLA 576 (582)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCHHHHHHHHHHHHChHHHHHHH
Confidence 4699999999999999999999999999999999999998776653
No 12
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.72 E-value=0.00016 Score=44.84 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHhCCc--EEecchhhHHHHHHHhhCcHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGES--QVAVPNGLLHVNNFCRLMPLKVARILK 53 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~--~v~iP~~~~~~~~l~~llP~~~~~~~~ 53 (65)
.++||+||+.|++++.+++. .+.+++...++..+.+++|.++++++.
T Consensus 225 ~~~~~~va~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 273 (277)
T PRK05993 225 KLGPEAVYAVLLHALTAPRPRPHYRVTTPAKQGALLKRLLPARWLYRLL 273 (277)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCeeeeCchhHHHHHHHHHCCHHHHHHHH
Confidence 57999999999999999875 455677777888889999987776553
No 13
>PRK09072 short chain dehydrogenase; Provisional
Probab=97.67 E-value=0.00025 Score=43.43 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHHh
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDF 55 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~~ 55 (65)
...+|+++|+.++..+.+++.++++++..++...+.+++|..+...+.+.
T Consensus 204 ~~~~~~~va~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 253 (263)
T PRK09072 204 AMDDPEDVAAAVLQAIEKERAERWLGWPEKLFVRLNGLLPSLVDRALRKQ 253 (263)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEecCchHHHHHHHHHHChHHHHHHHHhc
Confidence 35799999999999999999999999988888889999999777766554
No 14
>PRK07832 short chain dehydrogenase; Provisional
Probab=97.67 E-value=0.00023 Score=43.89 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHH
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKD 54 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~ 54 (65)
+.++||++|+.+++++.+++..++.+........+.+++|..+...+++
T Consensus 214 ~~~~~~~vA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 262 (272)
T PRK07832 214 HAVTPEKAAEKILAGVEKNRYLVYTSPDIRALYWFKRKAWWPYSLVMRQ 262 (272)
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEecCcchHHHHHHHhcCchHHHHHHHH
Confidence 3589999999999999999999999998888889999999877766544
No 15
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.66 E-value=0.00022 Score=45.27 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHH
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKD 54 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~ 54 (65)
..++||++|+.+++++.+++.++++|.+........+++|..+...+.+
T Consensus 209 ~~~~~~~va~~~~~~l~~~k~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (265)
T COG0300 209 LVLSPEDVAEAALKALEKGKREIIPGLPNKALALSFRLLPRSLREKLAG 257 (265)
T ss_pred hccCHHHHHHHHHHHHhcCCceEecChhhHHHHHHHHHhHHHHHHHHHH
Confidence 5799999999999999999999988856667777788888888766533
No 16
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.57 E-value=0.00032 Score=46.65 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecch-hhHHHHHHHhhCcHHHHHHH
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPN-GLLHVNNFCRLMPLKVARIL 52 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~-~~~~~~~l~~llP~~~~~~~ 52 (65)
..++||+||+.|++++.++++++++|. .+.++....+.+|.+++..+
T Consensus 354 ~~~spe~vA~~il~~i~~~~~~i~v~~~~~~~~~~~i~~~~~~~~~~l 401 (406)
T PRK07424 354 GVMSADWVAKQILKLAKRDFRNIIVTINPLTYLLFPIKEFSVSLYFKL 401 (406)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEeCchHHHHHHHHHHHhhHHHHHHH
Confidence 368999999999999999999999874 55566666788888777655
No 17
>PRK05599 hypothetical protein; Provisional
Probab=97.56 E-value=0.00022 Score=43.60 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHhCC--cEEecchhhHHHHHHHhhCcHHHHHHH
Q psy8930 8 LSPKDAASHIIRAQRRGE--SQVAVPNGLLHVNNFCRLMPLKVARIL 52 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~--~~v~iP~~~~~~~~l~~llP~~~~~~~ 52 (65)
.+||++|+.++..+.+++ ..+.+|+.+.++..+.+++|..++..+
T Consensus 198 ~~pe~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 244 (246)
T PRK05599 198 VYPRDVAAAVVSAITSSKRSTTLWIPGRLRVLAWIMRLVPRPIWRKM 244 (246)
T ss_pred CCHHHHHHHHHHHHhcCCCCceEEeCccHHHHHHHHHhCcHHHHHhc
Confidence 699999999999999875 568889888889999999999887754
No 18
>PRK05872 short chain dehydrogenase; Provisional
Probab=97.43 E-value=0.00053 Score=43.04 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHH
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARIL 52 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~ 52 (65)
...+||++|+.+++++.+++..++.|+.+.++..+...+|.++.+.+
T Consensus 217 ~~~~~~~va~~i~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~ 263 (296)
T PRK05872 217 RTTSVEKCAAAFVDGIERRARRVYAPRWVRLMQWLRPVLVTRLGQRE 263 (296)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEchHHHHHHHHhchHHHHHHHHHH
Confidence 35799999999999999999999999998888777788888777655
No 19
>PRK05650 short chain dehydrogenase; Provisional
Probab=97.31 E-value=0.0015 Score=40.24 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKD 54 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~ 54 (65)
.++++++|+.+++++.+++..+..+........+.+++|..+++++.+
T Consensus 209 ~~~~~~vA~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 256 (270)
T PRK05650 209 PITAADIADYIYQQVAKGEFLILPHEQGRRAWQLKRQAPQALYDEMTL 256 (270)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEecCchHHHHHHHHHHChHHHHHHHHH
Confidence 579999999999999998866643344556778889999988877654
No 20
>PLN02780 ketoreductase/ oxidoreductase
Probab=97.23 E-value=0.0012 Score=42.26 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecc-hhhHHHHHHHhhCcHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVP-NGLLHVNNFCRLMPLKVARILK 53 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP-~~~~~~~~l~~llP~~~~~~~~ 53 (65)
..+||++|+.+++++.+++ +++| +...+...+.+++|.+++..+.
T Consensus 255 ~~~p~~~A~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~P~~~~~~~~ 300 (320)
T PLN02780 255 VPSSDGYARAALRWVGYEP--RCTPYWPHSLIWGLISALPESAVDSWR 300 (320)
T ss_pred CCCHHHHHHHHHHHhCCCC--ccCCChHHHHHHHHHHHhHHHHHHHHH
Confidence 5799999999999997543 4577 5566777888999998877654
No 21
>PRK07109 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.0021 Score=41.25 Aligned_cols=49 Identities=20% Similarity=0.124 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHH
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKD 54 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~ 54 (65)
+..+||++|+.++.++.+++.++++++.........++.|..+.+.+.+
T Consensus 213 ~~~~pe~vA~~i~~~~~~~~~~~~vg~~~~~~~~~~~~~P~~~~~~~~~ 261 (334)
T PRK07109 213 PIYQPEVVADAILYAAEHPRRELWVGGPAKAAILGNRLAPGLLDRYLAR 261 (334)
T ss_pred CCCCHHHHHHHHHHHHhCCCcEEEeCcHHHHHHHHHHhCcHHHHHHHHH
Confidence 5689999999999999999999999998888888999999776655544
No 22
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.93 E-value=0.0049 Score=42.30 Aligned_cols=49 Identities=24% Similarity=0.294 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHHh
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDF 55 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~~ 55 (65)
+.++||++|+.|++++.+++..+..|+ ..+...+.+++|....+.+.+.
T Consensus 570 ~~~~~~~~a~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~ 618 (657)
T PRK07201 570 PTISPEEAADMVVRAIVEKPKRIDTPL-GTFAEVGHALAPRLARRILHQL 618 (657)
T ss_pred CCCCHHHHHHHHHHHHHhCCcEEeccH-HHHHHHHHHHCHHHHHHHHHHH
Confidence 568999999999999998888888775 5566777889998666666554
No 23
>PRK06182 short chain dehydrogenase; Validated
Probab=96.89 E-value=0.006 Score=37.56 Aligned_cols=48 Identities=23% Similarity=0.171 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHhCC--cEEecchhhHHHHHHHhhCcHHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGE--SQVAVPNGLLHVNNFCRLMPLKVARILKD 54 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~--~~v~iP~~~~~~~~l~~llP~~~~~~~~~ 54 (65)
..+||++|+.+++++.+++ ..+++++.......+.+++|..+.+.+.+
T Consensus 220 ~~~~~~vA~~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~ 269 (273)
T PRK06182 220 LSDPSVIADAISKAVTARRPKTRYAVGFGAKPLIFLRRILPDRAFDRLIM 269 (273)
T ss_pred CCCHHHHHHHHHHHHhCCCCCceeecCcchHHHHHHHHHCcHHHHHHHHH
Confidence 4699999999999999753 45666677778888999999887766543
No 24
>PRK08017 oxidoreductase; Provisional
Probab=96.81 E-value=0.0048 Score=37.37 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecc--hhhHHHHHHHhhCcHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVP--NGLLHVNNFCRLMPLKVARIL 52 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP--~~~~~~~~l~~llP~~~~~~~ 52 (65)
.++||++|+.++..+.+++..++.| +.......+.+++|.+++.++
T Consensus 206 ~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (256)
T PRK08017 206 TLGPEAVVPKLRHALESPKPKLRYPVTLVTHAVMVLKRLLPGRMMDKI 253 (256)
T ss_pred CCCHHHHHHHHHHHHhCCCCCceeecCcchHHHHHHHHHCCHHHHHHH
Confidence 3789999999999999999888776 345677788999999877755
No 25
>PRK06181 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.013 Score=35.66 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHHh
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDF 55 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~~ 55 (65)
..++|+++|+.++..+.+++..+..|........+.+..|..+..+....
T Consensus 208 ~~~~~~dva~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (263)
T PRK06181 208 KIMSAEECAEAILPAIARRKRLLVMSLRGRLGRWLKLIAPGLVDKIARKA 257 (263)
T ss_pred CCCCHHHHHHHHHHHhhCCCCEEecCchHHHHHHHHHHCHHHHHHHHHHh
Confidence 46899999999999999999999888777766778888998776655444
No 26
>PRK05693 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.014 Score=35.96 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHhCCc--EEecchhhHHHHHHHhhCcHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGES--QVAVPNGLLHVNNFCRLMPLKVARIL 52 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~--~v~iP~~~~~~~~l~~llP~~~~~~~ 52 (65)
..+|+++|+.+++++.+++. .++++........+.+++|..+.+++
T Consensus 216 ~~~~~~~a~~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~ 263 (274)
T PRK05693 216 PTPAAEFARQLLAAVQQSPRPRLVRLGNGSRALPLLARLLPRGLLDRV 263 (274)
T ss_pred CCCHHHHHHHHHHHHhCCCCCceEEecCchHHHHHHHHHCcHHHHHHH
Confidence 36899999999999998764 45566555667778899997666655
No 27
>PRK08267 short chain dehydrogenase; Provisional
Probab=96.04 E-value=0.041 Score=33.55 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHhC-CcEEecchhhHHHHHHHhhCcHHHHHHHHHhh
Q psy8930 7 LLSPKDAASHIIRAQRRG-ESQVAVPNGLLHVNNFCRLMPLKVARILKDFL 56 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~-~~~v~iP~~~~~~~~l~~llP~~~~~~~~~~~ 56 (65)
..+|+++|+.+++++.++ +..+.++..+.+.....+++|..+...+++.+
T Consensus 205 ~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 255 (260)
T PRK08267 205 RLTPEDVAEAVWAAVQHPTRLHWPVGKQAKLLAFLARLSPGFVRRLINKSL 255 (260)
T ss_pred CCCHHHHHHHHHHHHhCCCccEEeeChHHHHHHHHHHHChHHHHHHHHHHh
Confidence 478999999999999654 45566788888888899999999888887765
No 28
>PRK06179 short chain dehydrogenase; Provisional
Probab=96.04 E-value=0.043 Score=33.59 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHhCC-cEEecch-hhHHHHHHHhhCcHHHHHHH-HHhhc
Q psy8930 7 LLSPKDAASHIIRAQRRGE-SQVAVPN-GLLHVNNFCRLMPLKVARIL-KDFLD 57 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~-~~v~iP~-~~~~~~~l~~llP~~~~~~~-~~~~~ 57 (65)
..+||++|+.+++++.+++ ...+.|+ .......+.+++|.++.+.+ .++++
T Consensus 214 ~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 267 (270)
T PRK06179 214 ADAPEVVADTVVKAALGPWPKMRYTAGGQASLLSKLRRFMPAGAVDKSLRKTFG 267 (270)
T ss_pred CCCHHHHHHHHHHHHcCCCCCeeEecCchHHHHHHHHHHCcHHHHHHHHHHhcC
Confidence 4689999999999998875 4555664 45677788899998776654 54443
No 29
>PRK06914 short chain dehydrogenase; Provisional
Probab=95.90 E-value=0.041 Score=33.87 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHhCCcEE--ecchhhHHHHHHHhhCcHHHHHHH-HHh
Q psy8930 7 LLSPKDAASHIIRAQRRGESQV--AVPNGLLHVNNFCRLMPLKVARIL-KDF 55 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v--~iP~~~~~~~~l~~llP~~~~~~~-~~~ 55 (65)
..+|+++|+.++.++.+++... .++....+...+.+++|..++.++ .+.
T Consensus 226 ~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 277 (280)
T PRK06914 226 FGNPIDVANLIVEIAESKRPKLRYPIGKGVKLMILAKKILPWRLWEYLVLKS 277 (280)
T ss_pred cCCHHHHHHHHHHHHcCCCCCcccccCCchHHHHHHHHhcCHHHHHHHHHHH
Confidence 4799999999999999887543 345567777789999998877655 443
No 30
>PRK08264 short chain dehydrogenase; Validated
Probab=95.08 E-value=0.099 Score=31.31 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHH
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKV 48 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~ 48 (65)
+..+++++|+.+++++..++..++.+...+.+..+.+..|...
T Consensus 190 ~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 232 (238)
T PRK08264 190 PKASPADVARQILDALEAGDEEVLPDEMARQVKAALSADPKNY 232 (238)
T ss_pred CCCCHHHHHHHHHHHHhCCCCeEeccHHHHHHHHHhhcCCchh
Confidence 3689999999999999999999999988888888888888644
No 31
>PRK05876 short chain dehydrogenase; Provisional
Probab=91.52 E-value=0.41 Score=29.76 Aligned_cols=23 Identities=22% Similarity=0.001 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEe
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVA 29 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~ 29 (65)
.++|+++|+.+++++.+++..+.
T Consensus 223 ~~~~~dva~~~~~ai~~~~~~~~ 245 (275)
T PRK05876 223 NLGVDDIAQLTADAILANRLYVL 245 (275)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEe
Confidence 58999999999999999987664
No 32
>KOG1210|consensus
Probab=79.77 E-value=8.2 Score=25.64 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecchh-hHHHHHHHhhCcHH
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPNG-LLHVNNFCRLMPLK 47 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~~-~~~~~~l~~llP~~ 47 (65)
..++|++|+++++++.+++..+..-.. +-...+-.++.|..
T Consensus 243 ~~~~e~~a~~~~~~~~rg~f~~~~~~~g~l~s~~~~~~~p~~ 284 (331)
T KOG1210|consen 243 VIKCEEMAKAIVKGMKRGNFTVSLGFTGFLLSILSQGMSPGD 284 (331)
T ss_pred CcCHHHHHHHHHhHHhhcCeEEeechHHHHHHHhhcCCCcch
Confidence 589999999999999999999875433 11223344556654
No 33
>PRK06194 hypothetical protein; Provisional
Probab=79.72 E-value=3.4 Score=25.45 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecch
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPN 32 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~ 32 (65)
.++++++|+.+++++.+++..++.+.
T Consensus 236 ~~s~~dva~~i~~~~~~~~~~~~~~~ 261 (287)
T PRK06194 236 KVTAEEVAQLVFDAIRAGRFYIYSHP 261 (287)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEcCH
Confidence 37999999999999998888887655
No 34
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.63 E-value=14 Score=22.00 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHhCCcEE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v 28 (65)
.++++++|+.+++.+..++..+
T Consensus 207 ~~~~~~~a~~~~~~l~~~~~~~ 228 (239)
T PRK07666 207 VMQPEDLAEFIVAQLKLNKRTF 228 (239)
T ss_pred CCCHHHHHHHHHHHHhCCCceE
Confidence 5789999999999999886555
No 35
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=61.30 E-value=12 Score=26.51 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcEEe
Q psy8930 5 LGLLSPKDAASHIIRAQRRGESQVA 29 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~~~~~v~ 29 (65)
-|.||+++|+++++++|.+++...+
T Consensus 400 ~PeMSA~eVtd~~i~~i~~~~ydfi 424 (558)
T PLN02538 400 QPKMKALEIAEKARDALLSGKFDQV 424 (558)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 4899999999999999999865433
No 36
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=61.30 E-value=15 Score=20.23 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=20.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
.+|.++.|+++++|-..+.+|-..
T Consensus 8 ylp~lt~~~i~~QI~yll~qG~~~ 31 (99)
T cd03527 8 YLPPLTDEQIAKQIDYIISNGWAP 31 (99)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCEE
Confidence 479999999999999888887543
No 37
>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice.
Probab=60.92 E-value=30 Score=27.22 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEe---cchhhHHHHHHHhhCcHHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVA---VPNGLLHVNNFCRLMPLKVARILKD 54 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~---iP~~~~~~~~l~~llP~~~~~~~~~ 54 (65)
.++|+++|.+.++-+.++...+- ++.++..+.++...+|...+..+..
T Consensus 1146 P~~p~~v~~aLidvv~~~~~~~P~~~i~~~iNaigLiltaLP~~Y~~~l~~ 1196 (1341)
T PF11573_consen 1146 PVSPEDVANALIDVVVKGYSVIPREQIHSWINAIGLILTALPESYWNVLHD 1196 (1341)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 57899999999999998775542 1245677888889999998876643
No 38
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=52.65 E-value=14 Score=16.54 Aligned_cols=12 Identities=42% Similarity=0.648 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHH
Q psy8930 7 LLSPKDAASHII 18 (65)
Q Consensus 7 ~l~pe~vA~~iv 18 (65)
-++||++.++.+
T Consensus 22 ~LtpEDAvEaLi 33 (35)
T PF08383_consen 22 GLTPEDAVEALI 33 (35)
T ss_pred CCCHHHHHHHHh
Confidence 489999988765
No 39
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.65 E-value=22 Score=18.77 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHHHHHH
Q psy8930 5 LGLLSPKDAASHIIRA 20 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~a 20 (65)
||.-++|++|+.|++.
T Consensus 62 FPfk~a~~vad~iv~~ 77 (80)
T COG4746 62 FPFKSAEQVADTIVNK 77 (80)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5788999999999864
No 40
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=48.82 E-value=26 Score=24.62 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 5 LGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
-|.|+++++++++++.|++++..
T Consensus 361 ~PeMsa~evtd~~i~~I~~~k~d 383 (501)
T TIGR01307 361 QPEMSAKAVTDAVLEAIAQGKFD 383 (501)
T ss_pred CCccCHHHHHHHHHHHHhccCCC
Confidence 48899999999999999987543
No 41
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=48.12 E-value=32 Score=18.85 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=16.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
.+|.++.++++++|-..+.+|-..
T Consensus 7 ~lP~l~~~~i~~Qv~~ll~qG~~i 30 (99)
T PF00101_consen 7 YLPPLTDEEIAKQVRYLLSQGWII 30 (99)
T ss_dssp TSS---HHHHHHHHHHHHHTT-EE
T ss_pred cCCCCCHHHHHHHHHhhhhcCcee
Confidence 479999999999999888887654
No 42
>PF02022 Integrase_Zn: Integrase Zinc binding domain The structure of the N-terminal zinc binding domain.; InterPro: IPR003308 Retroviral integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains: an N-terminal zinc binding domain, a central catalytic core and a C-terminal DNA-binding domain [, ]. Often found as part of the POL polyprotein.; GO: 0008270 zinc ion binding; PDB: 1E0E_A 3F9K_F 1E27_C 1K6Y_B 1WJD_A 1WJB_A 1WJF_A 1WJE_B 3HPG_B 3HPH_C ....
Probab=47.00 E-value=21 Score=16.36 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q psy8930 10 PKDAASHIIRA 20 (65)
Q Consensus 10 pe~vA~~iv~a 20 (65)
|..||+.||+.
T Consensus 22 p~~vAk~IV~~ 32 (40)
T PF02022_consen 22 PRLVAKQIVNQ 32 (40)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55689999875
No 43
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=46.04 E-value=26 Score=22.40 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCcE
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
..++||++|+.|.-++.+.+..
T Consensus 211 ~~l~p~dIA~~V~~~~~~P~~v 232 (246)
T COG4221 211 TALTPEDIAEAVLFAATQPQHV 232 (246)
T ss_pred CCCCHHHHHHHHHHHHhCCCcc
Confidence 4789999999999999987664
No 44
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=45.52 E-value=36 Score=19.89 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~ 26 (65)
.+|.++.|+++++|--.|.+|=.
T Consensus 10 yLPpLTdeqI~kQI~Y~i~~GW~ 32 (138)
T CHL00130 10 FLPDLTDQQIEKQIQYAISKGWA 32 (138)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCe
Confidence 47999999999999988887744
No 45
>PRK07454 short chain dehydrogenase; Provisional
Probab=44.92 E-value=32 Score=20.47 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCcE
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
+..+||++|+.++..+..++..
T Consensus 206 ~~~~~~~va~~~~~l~~~~~~~ 227 (241)
T PRK07454 206 AMLSPEQVAQTILHLAQLPPSA 227 (241)
T ss_pred cCCCHHHHHHHHHHHHcCCccc
Confidence 3579999999999998876554
No 46
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=44.05 E-value=39 Score=22.11 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEe-c----chhhHHHHHHHhhCcHH
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVA-V----PNGLLHVNNFCRLMPLK 47 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~-i----P~~~~~~~~l~~llP~~ 47 (65)
|.++||+||++--.-...||-.-+ + |..+ .++..-+|..
T Consensus 131 pLmd~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~---~LL~s~l~~~ 174 (298)
T COG4989 131 PLMDAEEVAEAFTHLHKSGKVRHFGVSNFNPAQF---ELLQSRLPFT 174 (298)
T ss_pred ccCCHHHHHHHHHHHHhcCCeeeeecCCCCHHHH---HHHHHhccch
Confidence 789999999998877777776543 2 3333 3455556654
No 47
>PF12229 PG_binding_4: Putative peptidoglycan binding domain; InterPro: IPR022029 This domain is found associated with the L,D-transpeptidase domain PF03734 from PFAM. The structure of this domain has been solved and shows a mixed alpha-beta fold composed of nine beta strands and four alpha helices. This domain is usually found to be duplicated. Therefore, it seems likely that this domain acts to bind the two unlinked peptidoglycan chains and bring them into close association so they can be cross linked by the transpeptidase domain. ; PDB: 2HKL_C 1ZAT_A.
Probab=43.60 E-value=36 Score=17.75 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHhCCcEE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v 28 (65)
.++.+.+++.|.+++..++..|
T Consensus 92 ~id~~~~~~~i~~al~~~~~~i 113 (114)
T PF12229_consen 92 KIDVDKLAEAIKKALKNGKRTI 113 (114)
T ss_dssp EE-HHHHHHHHHHHHHTTS-EE
T ss_pred EEcHHHHHHHHHHHHHcCCCcc
Confidence 4688999999999999987654
No 48
>KOG4288|consensus
Probab=42.91 E-value=27 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=19.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~ 26 (65)
+-|.++.|+||...++|+.....
T Consensus 243 ~~ppvnve~VA~aal~ai~dp~f 265 (283)
T KOG4288|consen 243 LAPPVNVESVALAALKAIEDPDF 265 (283)
T ss_pred cCCCcCHHHHHHHHHHhccCCCc
Confidence 34899999999999999987643
No 49
>PF06497 DUF1098: Protein of unknown function (DUF1098); InterPro: IPR009477 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf102; it is a family of uncharacterised viral proteins.
Probab=42.30 E-value=59 Score=17.76 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhCCcEEecchhhHHHHHH
Q psy8930 11 KDAASHIIRAQRRGESQVAVPNGLLHVNNF 40 (65)
Q Consensus 11 e~vA~~iv~ai~~~~~~v~iP~~~~~~~~l 40 (65)
..+|++|+++|..+...+.+ .....+..|
T Consensus 56 S~~aK~il~~Ie~~~~~i~l-~~~~avnvL 84 (95)
T PF06497_consen 56 SAGAKKILESIEDDDDSIKL-NTDDAVNVL 84 (95)
T ss_pred hHHHHHHHHHHhcCCcceee-cHHHHHHHH
Confidence 45899999999999999888 555444333
No 50
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=41.70 E-value=44 Score=19.46 Aligned_cols=21 Identities=33% Similarity=0.571 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCcEEecch
Q psy8930 12 DAASHIIRAQRRGESQVAVPN 32 (65)
Q Consensus 12 ~vA~~iv~ai~~~~~~v~iP~ 32 (65)
++.+.|.+|..+||..+.=|+
T Consensus 111 Diie~iyrga~kGk~iv~sP~ 131 (133)
T PF02966_consen 111 DIIETIYRGARKGKGIVVSPK 131 (133)
T ss_dssp HHHHHHHHHHHTT-SEEE-SS
T ss_pred HHHHHHHHHhhcCCeeEeCCC
Confidence 488999999999999998775
No 51
>PRK08219 short chain dehydrogenase; Provisional
Probab=41.16 E-value=35 Score=19.91 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q psy8930 7 LLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~ 26 (65)
.++++++|+.++..+.+++.
T Consensus 195 ~~~~~dva~~~~~~l~~~~~ 214 (227)
T PRK08219 195 YLRPETVAKAVRFAVDAPPD 214 (227)
T ss_pred CCCHHHHHHHHHHHHcCCCC
Confidence 58999999999999987654
No 52
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=40.45 E-value=29 Score=17.87 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHHhCCcE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~ 27 (65)
.-+|+++|+.-++++.++-..
T Consensus 6 ~~~P~~~v~~f~~al~~gd~~ 26 (111)
T PF12870_consen 6 SSTPEEVVKNFFDALKNGDYE 26 (111)
T ss_dssp ---HHHHHHHHHHHHCTT-HH
T ss_pred CCCHHHHHHHHHHHHHcCCHH
Confidence 458999999999999988654
No 53
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.42 E-value=25 Score=18.39 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCcEEecchh
Q psy8930 13 AASHIIRAQRRGESQVAVPNG 33 (65)
Q Consensus 13 vA~~iv~ai~~~~~~v~iP~~ 33 (65)
.++.+-.++.+|...+.+|+.
T Consensus 34 ~~RaVg~al~~np~~~~iPcH 54 (80)
T TIGR00589 34 AVRAVGGANGRNPLAILVPCH 54 (80)
T ss_pred hHHHHHHHHHhCCCCCCCCCc
Confidence 577888899999988888874
No 54
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=40.31 E-value=51 Score=21.71 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEec
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAV 30 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~i 30 (65)
.++|++.|+..+++.+.+..++.+
T Consensus 25 P~TP~qIA~~a~~aa~AGAai~Hl 48 (298)
T COG3246 25 PVTPDQIASDAIAAAKAGAAILHL 48 (298)
T ss_pred CCCHHHHHHHHHHHHhcCcceEEE
Confidence 589999999999999999998765
No 55
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=40.20 E-value=37 Score=20.55 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHhC
Q psy8930 7 LLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~ 24 (65)
..+||++|+.++..+.+.
T Consensus 227 ~~~p~eva~~~~~l~~~~ 244 (256)
T TIGR01500 227 LVDPKVSAQKLLSLLEKD 244 (256)
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 579999999999888644
No 56
>PF06933 SSP160: Special lobe-specific silk protein SSP160; InterPro: IPR009701 This family consists of several special lobe-specific silk protein SSP160 sequences which appear to be specific to Chironomus (Midge) species.
Probab=38.10 E-value=55 Score=22.99 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCcEEecchhhHHHHHHH
Q psy8930 11 KDAASHIIRAQRRGESQVAVPNGLLHVNNFC 41 (65)
Q Consensus 11 e~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~ 41 (65)
.++|+.-++..++|-..+|+|..+.-+....
T Consensus 422 gkaaksgvrryrknik~vyippvmaslnaya 452 (756)
T PF06933_consen 422 GKAAKSGVRRYRKNIKYVYIPPVMASLNAYA 452 (756)
T ss_pred hHHHHHhHHHHhcCCcEEEeChHHHhhHHHH
Confidence 3578899999999999999999886554443
No 57
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=37.69 E-value=37 Score=22.05 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHhCCc
Q psy8930 8 LSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~ 26 (65)
-|||++|++.++|+.++-.
T Consensus 5 ~tPe~Aa~Al~~Av~~~d~ 23 (271)
T PF11453_consen 5 PTPEAAADALVDAVATNDE 23 (271)
T ss_pred CCHHHHHHHHHHHHhcCCH
Confidence 4899999999999998754
No 58
>KOG1205|consensus
Probab=37.51 E-value=34 Score=22.18 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCcE-EecchhhHHHHHHHhhCcHHHHH
Q psy8930 10 PKDAASHIIRAQRRGESQ-VAVPNGLLHVNNFCRLMPLKVAR 50 (65)
Q Consensus 10 pe~vA~~iv~ai~~~~~~-v~iP~~~~~~~~l~~llP~~~~~ 50 (65)
++.++.+|.....++... +..|....+...+..+.|...+.
T Consensus 227 ~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~ 268 (282)
T KOG1205|consen 227 PEAVAYAISTPPCRQVEDIIIAPSWEKLAFLLRTLCPELLFW 268 (282)
T ss_pred HHHHHHHHhcCcccchhheeecccccchhhhhhhhcchHHHh
Confidence 557777788777777744 44577777888899999987766
No 59
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=37.15 E-value=44 Score=17.38 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC
Q psy8930 3 SLLGLLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 3 ~~~p~l~pe~vA~~iv~ai~~~ 24 (65)
..+...+++..++.|+.++.+-
T Consensus 50 ~~~~~~~~~~L~~~I~~A~n~A 71 (93)
T PF02575_consen 50 SALRPLDPEELEDLIVEAVNDA 71 (93)
T ss_dssp GGGCTS-HHHHHHHHHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHHHHHH
Confidence 3444588999999999998764
No 60
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=36.06 E-value=45 Score=18.77 Aligned_cols=17 Identities=6% Similarity=-0.064 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy8930 7 LLSPKDAASHIIRAQRR 23 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~ 23 (65)
-.+++++|+.+++++.+
T Consensus 120 g~p~~~~A~~~~~~i~~ 136 (137)
T cd02903 120 GFPKDVVAKIMFDEVFK 136 (137)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 57899999999999864
No 61
>KOG4169|consensus
Probab=35.93 E-value=47 Score=21.40 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 5 LGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
.|..+|+.+|+.++++|+.++-.
T Consensus 213 ~~~q~~~~~a~~~v~aiE~~~NG 235 (261)
T KOG4169|consen 213 APKQSPACCAINIVNAIEYPKNG 235 (261)
T ss_pred cccCCHHHHHHHHHHHHhhccCC
Confidence 36789999999999999986543
No 62
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=35.74 E-value=53 Score=21.59 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHhCCcEEe
Q psy8930 8 LSPKDAASHIIRAQRRGESQVA 29 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~~v~ 29 (65)
++|..+|+++++|++.+-..++
T Consensus 73 Vp~~~aadai~EAida~i~liv 94 (293)
T COG0074 73 VPPPFAADAILEAIDAGIKLVV 94 (293)
T ss_pred cCcHHHHHHHHHHHhCCCcEEE
Confidence 5788999999999999655443
No 63
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=35.54 E-value=36 Score=23.12 Aligned_cols=26 Identities=8% Similarity=0.089 Sum_probs=22.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 2 PSLLGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 2 p~~~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
|..+|.+++|+.+..|-.+|..++..
T Consensus 127 ~~~~p~l~~~~i~~~~~~aVldt~~S 152 (389)
T TIGR02399 127 KKIFPNLVQEEIQTHASKSVLDTRFS 152 (389)
T ss_pred HhhCcccCHHHHHHHHHHHHhcCCCC
Confidence 56789999999999999999998754
No 64
>PRK00131 aroK shikimate kinase; Reviewed
Probab=34.63 E-value=48 Score=18.54 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQR 22 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~ 22 (65)
..+++++|+.|++.+.
T Consensus 155 ~~~~~e~~~~I~~~v~ 170 (175)
T PRK00131 155 GRSPEEVVNEILEKLE 170 (175)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5789999999999886
No 65
>PRK07578 short chain dehydrogenase; Provisional
Probab=34.53 E-value=54 Score=18.94 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHhC
Q psy8930 6 GLLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~ 24 (65)
..++||++|+.+++.+.+.
T Consensus 172 ~~~~~~~~a~~~~~~~~~~ 190 (199)
T PRK07578 172 EPVPAARVALAYVRSVEGA 190 (199)
T ss_pred CCCCHHHHHHHHHHHhccc
Confidence 3589999999999888754
No 66
>cd06445 ATase The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of
Probab=34.12 E-value=34 Score=17.51 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCcEEecchh
Q psy8930 13 AASHIIRAQRRGESQVAVPNG 33 (65)
Q Consensus 13 vA~~iv~ai~~~~~~v~iP~~ 33 (65)
.|+.+-.++.+|...+.+|++
T Consensus 32 ~~R~Vg~al~~np~~~~vP~H 52 (79)
T cd06445 32 AARAVGSALARNPIPILIPCH 52 (79)
T ss_pred cHHHHHHHHHhCCCCCCCCce
Confidence 567777889999888888874
No 67
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=34.01 E-value=57 Score=20.79 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecc
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVP 31 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP 31 (65)
.++||+.|+..++..+.|...+.+-
T Consensus 22 P~tpeEia~~A~~c~~AGAa~vH~H 46 (272)
T PF05853_consen 22 PITPEEIAADAVACYEAGAAIVHIH 46 (272)
T ss_dssp --SHHHHHHHHHHHHHHTESEEEE-
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEee
Confidence 5899999999999999999998874
No 68
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=33.73 E-value=68 Score=17.96 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhCCcEEecc
Q psy8930 11 KDAASHIIRAQRRGESQVAVP 31 (65)
Q Consensus 11 e~vA~~iv~ai~~~~~~v~iP 31 (65)
+++|+.+.++++++...+++.
T Consensus 22 ~~aa~~i~~~~~~gg~i~~~G 42 (138)
T PF13580_consen 22 EKAADLIAEALRNGGRIFVCG 42 (138)
T ss_dssp HHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEc
Confidence 578999999999999999875
No 69
>PRK08309 short chain dehydrogenase; Provisional
Probab=33.64 E-value=71 Score=18.90 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHhCCcEEec
Q psy8930 8 LSPKDAASHIIRAQRRGESQVAV 30 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~~v~i 30 (65)
++=|++++.+++||+.+.....+
T Consensus 149 lt~~ei~~gv~~~~~~~~~~~~~ 171 (177)
T PRK08309 149 LTHEEISDGVIKAIESDADEHVV 171 (177)
T ss_pred CchHHHHHHHHHHHhcCCCeEEE
Confidence 57789999999999998877654
No 70
>PF15565 Imm16: Immunity protein 16
Probab=33.46 E-value=91 Score=17.34 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCc-HHHHHHHHHhhcC
Q psy8930 12 DAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMP-LKVARILKDFLDS 58 (65)
Q Consensus 12 ~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP-~~~~~~~~~~~~~ 58 (65)
+|=..++..++.+....++++....+..+..-.| .+......|.++.
T Consensus 48 eVmf~lvh~lE~~~~~~~l~~l~~~~p~m~~~A~keWa~il~~RilNs 95 (106)
T PF15565_consen 48 EVMFSLVHFLEHFDMEEYLPALAEAIPQMMINAPKEWAKILHYRILNS 95 (106)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 5677888999999999888888888888877788 6555555777665
No 71
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=33.32 E-value=63 Score=17.24 Aligned_cols=18 Identities=0% Similarity=-0.082 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy8930 6 GLLSPKDAASHIIRAQRR 23 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~ 23 (65)
+-.+||+||+...+.+.+
T Consensus 81 ~g~~aE~Vg~~Aa~~L~~ 98 (103)
T PF05189_consen 81 RGVPAEKVGEEAAEELLE 98 (103)
T ss_dssp TTS-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 357899999988887764
No 72
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=32.77 E-value=72 Score=19.80 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecchh
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPNG 33 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~~ 33 (65)
..+++.+++.|-.|++++...|.+.+-
T Consensus 85 ~~~~~~i~~Ai~~Ai~~gadIIn~S~g 111 (247)
T cd07491 85 SITPQSAAKAIEAAVEKKVDIISMSWT 111 (247)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEeeee
Confidence 357889999999999999999998754
No 73
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=32.65 E-value=32 Score=19.53 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.2
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy8930 5 LGLLSPKDAASHIIRAQR 22 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~ 22 (65)
.+.++.+++|+.+++++.
T Consensus 165 ~~~i~~~DvA~~~~~~l~ 182 (183)
T PF13460_consen 165 VNFISREDVAKAIVEALE 182 (183)
T ss_dssp HCEEEHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHhC
Confidence 356889999999999876
No 74
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=32.35 E-value=50 Score=15.88 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRA 20 (65)
Q Consensus 7 ~l~pe~vA~~iv~a 20 (65)
.++++++|+++++.
T Consensus 43 ~vd~~~iA~~ml~~ 56 (57)
T PF04316_consen 43 KVDAEKIAEKMLDF 56 (57)
T ss_dssp ---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhc
Confidence 46788888888764
No 75
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=32.33 E-value=93 Score=20.26 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHH
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVA 49 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~ 49 (65)
+=++|++++.|-++++.+...+++-.... .+++|+.+.
T Consensus 272 vE~~eev~~~i~~~~~~~~~~l~v~pdcg-----l~~lp~~~a 309 (326)
T PRK08575 272 MEKISTIRRIVNKVKRKGVSDIIVGNNTL-----FDFIPEVVA 309 (326)
T ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCCCC-----cccCcHHHH
Confidence 45799999999999997777787755443 456776554
No 76
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=32.30 E-value=46 Score=22.57 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 2 PSLLGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 2 p~~~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
|.++|.++.|+.++.|-.+|..++..
T Consensus 121 ~~~~p~l~~~~i~~~~~~sVldt~~S 146 (381)
T PF09506_consen 121 PAILPELSQEEIEKLIEASVLDTRVS 146 (381)
T ss_pred HhhCcccCHHHHHHHHHHHHhcCCCC
Confidence 55689999999999999999998754
No 77
>PRK08263 short chain dehydrogenase; Provisional
Probab=32.29 E-value=54 Score=20.04 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHhCC
Q psy8930 8 LSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~ 25 (65)
.+|+++|+.++..+.+++
T Consensus 218 ~~p~dva~~~~~l~~~~~ 235 (275)
T PRK08263 218 GDPEAAAEALLKLVDAEN 235 (275)
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 799999999999998764
No 78
>PF01035 DNA_binding_1: 6-O-methylguanine DNA methyltransferase, DNA binding domain; InterPro: IPR014048 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase This entry represents the DNA binding region of 6-O-methylguanine-DNA methyltransferases. The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources [].; GO: 0003824 catalytic activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A 2KIM_A 2KIF_A ....
Probab=31.87 E-value=28 Score=18.22 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCcEEecchh
Q psy8930 13 AASHIIRAQRRGESQVAVPNG 33 (65)
Q Consensus 13 vA~~iv~ai~~~~~~v~iP~~ 33 (65)
.|+.+-.++.+|...+.+|++
T Consensus 34 ~ar~Vg~al~~np~~~~iP~H 54 (85)
T PF01035_consen 34 AARAVGSALARNPIPIIIPCH 54 (85)
T ss_dssp CHHHHHHHHHTSSCTTTSGGG
T ss_pred cHHHHHHHhccccccCCCCeE
Confidence 567788888998887778874
No 79
>COG2892 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.79 E-value=43 Score=17.88 Aligned_cols=17 Identities=18% Similarity=0.220 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHHhC
Q psy8930 8 LSPKDAASHIIRAQRRG 24 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~ 24 (65)
...|++|+.|.+++.-+
T Consensus 10 ~~see~AevIY~sv~~E 26 (82)
T COG2892 10 FPSEEVAEVIYRSVLPE 26 (82)
T ss_pred cCcHHHHHHHHHHhhHH
Confidence 56679999999987643
No 80
>COG1595 RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]
Probab=31.33 E-value=82 Score=18.21 Aligned_cols=44 Identities=9% Similarity=0.003 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHH
Q psy8930 9 SPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKD 54 (65)
Q Consensus 9 ~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~ 54 (65)
++||+++.++-.+.++.... +..-.+-.++.++.-..+.+.+++
T Consensus 41 dAeDlvQE~~lr~~~~~~~~--~~~~~~~~wl~~Ia~n~~iD~~R~ 84 (182)
T COG1595 41 DAEDLVQETFLRAWRAIDSF--RGRSSFKAWLYRIARNLAIDRLRK 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHHHHHHHH
Confidence 68899998887777665544 333344455666666777777654
No 81
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=31.18 E-value=1.6e+02 Score=19.53 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHHhhcC
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDFLDS 58 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~~~~~ 58 (65)
++|.++.|+.-+.+.+...++... .+-..+..++|.++...+.+..|+
T Consensus 261 ~~p~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~~~~~~~~~~~ 308 (400)
T TIGR00275 261 LLPDLSEEELEQRLKRLRKSNPKK-------TVKNILKGLLPKRLAELLLEQLGI 308 (400)
T ss_pred cCCCCCHHHHHHHHHHHHHHChhh-------hHHHHhhhhhhHHHHHHHHHHcCC
Confidence 467788887777776655544322 223446678899888888777665
No 82
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=31.10 E-value=62 Score=17.38 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHHhhc
Q psy8930 12 DAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDFLD 57 (65)
Q Consensus 12 ~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~~~~ 57 (65)
++++.|++...+......-......+...++-.|......+.+.++
T Consensus 59 YL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 59 YLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555555554433222221221223333344455555555555544
No 83
>PHA02891 hypothetical protein; Provisional
Probab=30.59 E-value=45 Score=18.63 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=18.2
Q ss_pred HHHHHHhhCcHHHHHHHHHhhcCCCCCc
Q psy8930 36 HVNNFCRLMPLKVARILKDFLDSGVDSD 63 (65)
Q Consensus 36 ~~~~l~~llP~~~~~~~~~~~~~~~~~~ 63 (65)
++..+++++-.+-.+.+.+.||..++.|
T Consensus 79 FfNi~Sk~ii~PPDD~~~rIFG~e~~id 106 (120)
T PHA02891 79 FFNIISKLIIIPPDDALKRIFGDESEID 106 (120)
T ss_pred HHHHHHHHhcCCcHHHHHHHhCCcceec
Confidence 4455555555555678888888876654
No 84
>PF05418 Apo-VLDL-II: Apovitellenin I (Apo-VLDL-II); InterPro: IPR008404 This family consists of several avian apovitellenin I sequences. As part of the avian reproductive effort, large quantities of triglyceride-rich very-low-density lipoprotein (VLDL) particles are transported by receptor-mediated endocytosis into the female germ cells. Although the oocytes are surrounded by a layer of granulosa cells harbouring high levels of active lipoprotein lipase, non-lipolysed VLDL is transported into the yolk. This is because VLDL particles from laying chickens (Gallus gallus) are protected from lipolysis by apolipoprotein (apo)-VLDL-II, a potent dimeric lipoprotein lipase inhibitor []. Apo-VLDL-II is produced in the liver and secreted into the blood stream when induced by estrogen production in female birds.; GO: 0004857 enzyme inhibitor activity, 0006629 lipid metabolic process, 0042627 chylomicron
Probab=30.30 E-value=54 Score=17.26 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy8930 7 LLSPKDAASHIIRAQRR 23 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~ 23 (65)
++=||.+|..|.+++.+
T Consensus 12 lviPdaiA~YiYEavNk 28 (82)
T PF05418_consen 12 LVIPDAIAAYIYEAVNK 28 (82)
T ss_pred eeccHHHHHHHHHHHHc
Confidence 56689999999999987
No 85
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=29.53 E-value=69 Score=17.89 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQR 22 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~ 22 (65)
.++||.|...+.++++
T Consensus 17 ALs~E~v~~aL~dAlR 32 (105)
T PF09702_consen 17 ALSPEAVEVALYDALR 32 (105)
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5789998888887765
No 86
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=29.18 E-value=92 Score=20.96 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEec
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAV 30 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~i 30 (65)
.+++|++.+.+-++...|-+++.+
T Consensus 89 ~Ls~eeI~~~~~~~~~~G~~Evli 112 (370)
T COG1060 89 TLSPEEILEEVREAVKRGITEVLI 112 (370)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEEE
Confidence 799999999999999999999875
No 87
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=29.09 E-value=86 Score=19.12 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=18.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC
Q psy8930 4 LLGLLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~ 24 (65)
.+|.++.|+++++|=-.|.+|
T Consensus 72 YLPpLtdeqI~kQVeYli~~G 92 (176)
T PLN02289 72 YLPDLTDEELAKEVDYLLRNK 92 (176)
T ss_pred cCCCCCHHHHHHHHHHHHhCC
Confidence 479999999999998888776
No 88
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=29.05 E-value=1.4e+02 Score=18.33 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHh------CCcEEecchhhH--HHHHHHhhCcHHHHHHHHH
Q psy8930 6 GLLSPKDAASHIIRAQRR------GESQVAVPNGLL--HVNNFCRLMPLKVARILKD 54 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~------~~~~v~iP~~~~--~~~~l~~llP~~~~~~~~~ 54 (65)
..-+||++|+.+-+.|+. .++.+.+.-.+. ++..+..-+|......+..
T Consensus 43 ~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~ 99 (192)
T PF06057_consen 43 SERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRLPAALRARVAQ 99 (192)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhCCHHHHhheeE
Confidence 356788888777666653 444555665553 7888889999988776643
No 89
>PF10847 DUF2656: Protein of unknown function (DUF2656); InterPro: IPR020325 This entry contains uncharacterised proteins from the cpeY 3'-region. They have no known function, but are found in the phycobilisome.
Probab=28.23 E-value=52 Score=19.13 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEE
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v 28 (65)
-.++|+++|+..+++..+.|...
T Consensus 51 s~lsp~~~~~~~v~aw~~~R~~~ 73 (132)
T PF10847_consen 51 SDLSPDEMAEELVRAWKQYRNSL 73 (132)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhh
Confidence 35899999999999988766543
No 90
>KOG4062|consensus
Probab=27.86 E-value=70 Score=19.42 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCcEEecchh
Q psy8930 12 DAASHIIRAQRRGESQVAVPNG 33 (65)
Q Consensus 12 ~vA~~iv~ai~~~~~~v~iP~~ 33 (65)
.+|+++-.|+.+|...+.+|+.
T Consensus 120 saaRaVg~A~~~n~la~lvPcH 141 (178)
T KOG4062|consen 120 SAARAVGSAMAHNNLAILVPCH 141 (178)
T ss_pred HHHHHHHHHHccCCCcEEecce
Confidence 4788999999999999999975
No 91
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.84 E-value=90 Score=19.90 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHhCCcEEecchhhH
Q psy8930 9 SPKDAASHIIRAQRRGESQVAVPNGLL 35 (65)
Q Consensus 9 ~pe~vA~~iv~ai~~~~~~v~iP~~~~ 35 (65)
.-++||+++.+.-++|.+.+++|+---
T Consensus 52 ~~~~V~~~l~~~a~~G~~v~~i~GN~D 78 (237)
T COG2908 52 LHRQVAQKLLRLARKGTRVYYIHGNHD 78 (237)
T ss_pred HHHHHHHHHHHHHhcCCeEEEecCchH
Confidence 346799999999999999999987543
No 92
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=27.57 E-value=45 Score=17.06 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHhCCc
Q psy8930 8 LSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~ 26 (65)
.+|.++|+.+.+.+..+..
T Consensus 51 ~~P~~iA~~i~~~l~~~~~ 69 (85)
T PF03485_consen 51 KNPREIAEEIAEKLEKSPI 69 (85)
T ss_dssp S-HHHHHHHHHHCHCTTTT
T ss_pred CCHHHHHHHHHHhcCCCCC
Confidence 5899999999999988763
No 93
>PRK00901 methylated-DNA--protein-cysteine methyltransferase; Provisional
Probab=27.14 E-value=57 Score=19.20 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCcEEecchh
Q psy8930 12 DAASHIIRAQRRGESQVAVPNG 33 (65)
Q Consensus 12 ~vA~~iv~ai~~~~~~v~iP~~ 33 (65)
.+|+++-.|+.+|..-+.+|..
T Consensus 104 ~a~RAVg~A~~~NP~~iiIPCH 125 (155)
T PRK00901 104 KACRAVGLANNKNPIPIFIPCH 125 (155)
T ss_pred chHHHHHHHHHhCCCCCccCCc
Confidence 3778888999999999989864
No 94
>PRK07023 short chain dehydrogenase; Provisional
Probab=26.83 E-value=88 Score=18.58 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q psy8930 7 LLSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~ 25 (65)
..+|+++|+.+++.+..+.
T Consensus 213 ~~~~~~va~~~~~~l~~~~ 231 (243)
T PRK07023 213 LSTPEDAARRLIAYLLSDD 231 (243)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 5788999998888887654
No 95
>PRK06180 short chain dehydrogenase; Provisional
Probab=26.37 E-value=83 Score=19.27 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q psy8930 7 LLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~ 26 (65)
..+|+++|+.++..+.++..
T Consensus 221 ~~~~~dva~~~~~~l~~~~~ 240 (277)
T PRK06180 221 PGDPAKAAQAILAAVESDEP 240 (277)
T ss_pred CCCHHHHHHHHHHHHcCCCC
Confidence 46899999999999987653
No 96
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=26.15 E-value=38 Score=20.22 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQ 21 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai 21 (65)
..+|++.|++|.+.+
T Consensus 159 ~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 159 ATSPEECAREILARL 173 (174)
T ss_dssp SS-HHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHh
Confidence 479999999998754
No 97
>PRK10286 O-6-alkylguanine-DNA:cysteine-protein methyltransferase; Provisional
Probab=26.14 E-value=55 Score=19.68 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCcEEecchh
Q psy8930 13 AASHIIRAQRRGESQVAVPNG 33 (65)
Q Consensus 13 vA~~iv~ai~~~~~~v~iP~~ 33 (65)
+|+++-.|+.+|..-+.+|+.
T Consensus 120 aaRaVG~A~~~Np~~i~iPCH 140 (171)
T PRK10286 120 AARAVGAANGSNPISIVVPCH 140 (171)
T ss_pred hHHHHHHHHHhCCCCCccCCc
Confidence 788889999999999889974
No 98
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=25.94 E-value=81 Score=19.09 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy8930 6 GLLSPKDAASHIIRAQRR 23 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~ 23 (65)
.-+++|.+|+.++.++..
T Consensus 167 gg~p~~~aA~~m~~ai~~ 184 (186)
T cd02900 167 GGVPPEIAAKQMAFAIRL 184 (186)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 357899999999998864
No 99
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=25.66 E-value=78 Score=18.67 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q psy8930 7 LLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~ 26 (65)
..+||++|+.++..+..+..
T Consensus 200 ~~~~~~~a~~~~~l~~~~~~ 219 (235)
T PRK09009 200 LFTPEYVAQCLLGIIANATP 219 (235)
T ss_pred CCCHHHHHHHHHHHHHcCCh
Confidence 46999999999998887643
No 100
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=25.62 E-value=63 Score=16.94 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=12.5
Q ss_pred CCCCCHHHHHHHHHHH
Q psy8930 5 LGLLSPKDAASHIIRA 20 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~a 20 (65)
||.=+++++|..|++.
T Consensus 57 FP~k~a~~lad~i~~r 72 (75)
T PF07747_consen 57 FPYKSAEDLADDIVER 72 (75)
T ss_dssp SB-SHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 6788999999999864
No 101
>PRK06924 short chain dehydrogenase; Provisional
Probab=25.46 E-value=88 Score=18.62 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHHHhC
Q psy8930 7 LLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~ 24 (65)
..+||++|+.++..+..+
T Consensus 220 ~~~~~dva~~~~~l~~~~ 237 (251)
T PRK06924 220 LLSPEYVAKALRNLLETE 237 (251)
T ss_pred cCCHHHHHHHHHHHHhcc
Confidence 578999999999888763
No 102
>COG5404 SulA SOS-response cell division inhibitor, blocks FtsZ ring formation [Cell division and chromosome partitioning]
Probab=25.37 E-value=1.1e+02 Score=18.34 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecchhh
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPNGL 34 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~~~ 34 (65)
-++|-...+.+++|++.|+..+++.|.-
T Consensus 94 q~~p~~tle~m~~ALrtGnysvVigWl~ 121 (169)
T COG5404 94 QLSPCHTVESMVRALRTGNYSVVIGWLA 121 (169)
T ss_pred hcCcHHHHHHHHHHHHcCCceEEEeecc
Confidence 4677778899999999999999888754
No 103
>PRK13669 hypothetical protein; Provisional
Probab=25.25 E-value=1.1e+02 Score=16.20 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q psy8930 7 LLSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~ 25 (65)
.-+||+..++|.+.|+.|.
T Consensus 58 a~t~eeL~~kI~~~i~e~~ 76 (78)
T PRK13669 58 GETPEELVENIYAHLEENP 76 (78)
T ss_pred cCCHHHHHHHHHHHHhhcC
Confidence 5689999999999998764
No 104
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=25.22 E-value=1.1e+02 Score=15.88 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHhCCcE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~ 27 (65)
..++|++.+.+-+|+..+...
T Consensus 19 ~~s~dev~~~v~~Al~~~~~~ 39 (74)
T PF11305_consen 19 DQSADEVEAAVTDALADGSGV 39 (74)
T ss_pred CCCHHHHHHHHHHHHhCCCce
Confidence 468999999999999988443
No 105
>PLN02455 fructose-bisphosphate aldolase
Probab=25.20 E-value=75 Score=21.50 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHhCCcEEecch
Q psy8930 8 LSPKDAASHIIRAQRRGESQVAVPN 32 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~~v~iP~ 32 (65)
-+||+||+..++++++.-.-- +|+
T Consensus 238 ~s~e~vA~~Tv~~l~rtVP~a-vpG 261 (358)
T PLN02455 238 VSPEVIAEYTVRALQRTVPPA-VPG 261 (358)
T ss_pred CCHHHHHHHHHHHHHhhCCcc-CCc
Confidence 499999999999999864433 344
No 106
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=25.09 E-value=41 Score=22.34 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHhCCcEEecc
Q psy8930 8 LSPKDAASHIIRAQRRGESQVAVP 31 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~~v~iP 31 (65)
.+.++.|++|+++++++.....+|
T Consensus 103 a~s~d~~~ei~eglr~~a~kfgvp 126 (324)
T COG2144 103 AKSEDQAREILEGLRKGARKFGVP 126 (324)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCc
Confidence 467889999999999987776655
No 107
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=24.82 E-value=1e+02 Score=16.48 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHhCCcEEecc
Q psy8930 9 SPKDAASHIIRAQRRGESQVAVP 31 (65)
Q Consensus 9 ~pe~vA~~iv~ai~~~~~~v~iP 31 (65)
+++.+++.+.+++.+|+..|..-
T Consensus 68 ~~~~~~~~~~~~L~~G~~VVt~n 90 (117)
T PF03447_consen 68 SSEAVAEYYEKALERGKHVVTAN 90 (117)
T ss_dssp SCHHHHHHHHHHHHTTCEEEES-
T ss_pred CchHHHHHHHHHHHCCCeEEEEC
Confidence 45778888888899888888643
No 108
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=24.76 E-value=1.2e+02 Score=17.63 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhCCcEEecchhh
Q psy8930 11 KDAASHIIRAQRRGESQVAVPNGL 34 (65)
Q Consensus 11 e~vA~~iv~ai~~~~~~v~iP~~~ 34 (65)
.++.+.+++|..+|+..+.-|...
T Consensus 113 ~~~i~~~~~~a~~g~~~~~~~~~~ 136 (142)
T PLN00410 113 IDIVETVYRGARKGRGLVISPKDY 136 (142)
T ss_pred HHHHHHHHHHHhcCCeEEECCCcc
Confidence 457888999999999999888754
No 109
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=24.47 E-value=76 Score=17.54 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=12.8
Q ss_pred CCCHHHHHHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQR 22 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~ 22 (65)
-.+++++|+.|.++|+
T Consensus 118 g~~~~~~a~i~~~~i~ 133 (133)
T cd03330 118 GLPKEDVARLMVEVIE 133 (133)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 4788999999888763
No 110
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=24.42 E-value=1.2e+02 Score=15.96 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhCCcEEecchh
Q psy8930 11 KDAASHIIRAQRRGESQVAVPNG 33 (65)
Q Consensus 11 e~vA~~iv~ai~~~~~~v~iP~~ 33 (65)
+.+.+++.+++.++....++|--
T Consensus 76 ~~~~~~~~~~l~~g~~v~ifPeG 98 (130)
T TIGR00530 76 ATALKAAIEVLKQGRSIGVFPEG 98 (130)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCC
Confidence 45678888999998888888754
No 111
>PRK13937 phosphoheptose isomerase; Provisional
Probab=24.36 E-value=1.2e+02 Score=18.01 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhCCcEEecch
Q psy8930 11 KDAASHIIRAQRRGESQVAVPN 32 (65)
Q Consensus 11 e~vA~~iv~ai~~~~~~v~iP~ 32 (65)
+++|+++++.+.+.++..++..
T Consensus 25 ~~aa~~i~~~l~~a~rI~i~G~ 46 (188)
T PRK13937 25 AKVAEALIEALANGGKILLCGN 46 (188)
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 5689999999999999887754
No 112
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=24.19 E-value=97 Score=16.90 Aligned_cols=18 Identities=28% Similarity=0.017 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy8930 6 GLLSPKDAASHIIRAQRR 23 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~ 23 (65)
..=+++..|++|..|+.+
T Consensus 97 ~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 97 FEDTAEFIARRIEAAARR 114 (115)
T ss_dssp TTTTHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 345899999999998864
No 113
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=24.05 E-value=2.4e+02 Score=19.14 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHHhhcC
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDFLDS 58 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~~~~~ 58 (65)
++|.++.|++.+.+.+...++...- +-..+..++|.++...+.+..+.
T Consensus 268 ~~p~~~~e~l~~~l~~~~~~~~~~~-------~~~~l~~~lp~rl~~~ll~~~~i 315 (409)
T PF03486_consen 268 FLPDLSEEELEELLQERKEKNPKRT-------LKNFLKGLLPKRLALALLKRAGI 315 (409)
T ss_dssp SSTTS-HHHHHHHHHHHHHHTTTSB-------HHHHHTTTS-HHHHHHHHHHTTS
T ss_pred eCCCCCHHHHHHHHHHHHHHHHhhH-------HHHHHHHHhHHHHHHHHHHHcCC
Confidence 5789999999999988887654332 23457788999998887766655
No 114
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.77 E-value=1.2e+02 Score=18.13 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhCCcEEecc
Q psy8930 10 PKDAASHIIRAQRRGESQVAVP 31 (65)
Q Consensus 10 pe~vA~~iv~ai~~~~~~v~iP 31 (65)
-+++|+.+.+++.++++.+++.
T Consensus 30 i~~a~~~i~~al~~~~rI~i~G 51 (192)
T PRK00414 30 IQRAAVLIADSFKAGGKVLSCG 51 (192)
T ss_pred HHHHHHHHHHHHHCCCEEEEEe
Confidence 3678999999999999998865
No 115
>PTZ00019 fructose-bisphosphate aldolase; Provisional
Probab=23.77 E-value=83 Score=21.28 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHhCCcE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~ 27 (65)
-.+||+||+..++++++.-.-
T Consensus 235 ~~s~e~vA~~Tv~~l~rtVP~ 255 (355)
T PTZ00019 235 KATPQEVAFYTVRTLSRTVPP 255 (355)
T ss_pred CCCHHHHHHHHHHHHHhcCCc
Confidence 468999999999999986443
No 116
>TIGR03612 RutA pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase.
Probab=23.17 E-value=1.3e+02 Score=19.82 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHh-CCcEEe
Q psy8930 7 LLSPKDAASHIIRAQRR-GESQVA 29 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~-~~~~v~ 29 (65)
.=|||+||++|.+-.+. +-..+.
T Consensus 305 vGtPe~Vae~l~~~~~~~G~d~f~ 328 (355)
T TIGR03612 305 VGSYETVARMLDEVAEVPGTGGVL 328 (355)
T ss_pred EECHHHHHHHHHHHHhccCCCeeE
Confidence 35799999999988876 666544
No 117
>PRK08278 short chain dehydrogenase; Provisional
Probab=23.15 E-value=92 Score=19.10 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q psy8930 7 LLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~ 26 (65)
..+||++|+.++..+.....
T Consensus 216 ~~~p~~va~~~~~l~~~~~~ 235 (273)
T PRK08278 216 SRTPEIMADAAYEILSRPAR 235 (273)
T ss_pred cCCHHHHHHHHHHHhcCccc
Confidence 57999999999998876554
No 118
>cd00948 FBP_aldolase_I_a Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). This family includes proteins found in vertebrates, plants, and bacterial plant pathogens. Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=22.91 E-value=89 Score=20.94 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHhCCcE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~ 27 (65)
-.+||+||+..++++++.-.-
T Consensus 230 ~~~~e~vA~~Tv~~l~rtvP~ 250 (330)
T cd00948 230 KASPEEVAEYTVRALRRTVPA 250 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCc
Confidence 468999999999999986443
No 119
>PRK13975 thymidylate kinase; Provisional
Probab=22.70 E-value=93 Score=18.00 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHhCCc
Q psy8930 8 LSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~ 26 (65)
.++|+++++|.+.+.+...
T Consensus 175 ~~~eev~~~I~~~i~~~~~ 193 (196)
T PRK13975 175 KSIEEVFNEILNKIKDKIP 193 (196)
T ss_pred CCHHHHHHHHHHHHHHhCC
Confidence 6789999999988876544
No 120
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=22.52 E-value=1.3e+02 Score=21.39 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcEEe
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGESQVA 29 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~~v~ 29 (65)
+.|.||+-+|.+++++++.+++..++
T Consensus 367 l~PEMSa~evtd~~~~~i~~g~~D~i 392 (509)
T COG0696 367 LKPEMSAKEVTDALVEAIEKGKYDLI 392 (509)
T ss_pred cCcccchHHHHHHHHHHHhCCCCCEE
Confidence 35899999999999999999965544
No 121
>PLN02425 probable fructose-bisphosphate aldolase
Probab=22.49 E-value=90 Score=21.39 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecch
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPN 32 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~ 32 (65)
..+||+||+..++++++.-.-- +|+
T Consensus 272 ~~s~e~VA~~Tv~~l~rtVP~A-VPG 296 (390)
T PLN02425 272 KASPETIAKYTLTMLRRRVPPA-VPG 296 (390)
T ss_pred CCCHHHHHHHHHHHHHhcCCCC-CCc
Confidence 3689999999999998764433 344
No 122
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=22.44 E-value=1e+02 Score=17.94 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy8930 7 LLSPKDAASHIIRAQRR 23 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~ 23 (65)
-.+++.+|+.+++++.+
T Consensus 127 g~p~~~~a~~~~~~i~~ 143 (175)
T cd02907 127 GFPLERCVETIVEAVKE 143 (175)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 46889999999988874
No 123
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=22.28 E-value=1.1e+02 Score=17.74 Aligned_cols=18 Identities=28% Similarity=0.163 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHhC
Q psy8930 7 LLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~ 24 (65)
..+++++++.|++.++.|
T Consensus 155 ~~s~~ei~~~i~~~l~~~ 172 (172)
T PRK05057 155 DQSAKVVANQIIHMLESN 172 (172)
T ss_pred CCCHHHHHHHHHHHHhhC
Confidence 367889999988877654
No 124
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=22.24 E-value=88 Score=17.84 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHh
Q psy8930 12 DAASHIIRAQRR 23 (65)
Q Consensus 12 ~vA~~iv~ai~~ 23 (65)
.+|+.|++||.+
T Consensus 164 ~~A~ai~~gI~~ 175 (175)
T PF01520_consen 164 KIAEAIAKGIAK 175 (175)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 488999988864
No 125
>PLN02227 fructose-bisphosphate aldolase I
Probab=22.23 E-value=91 Score=21.41 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecch
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPN 32 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~ 32 (65)
-.+||+||+..++++++.-.-- +|+
T Consensus 281 ~~s~e~VA~~Tv~~L~rtVP~A-VPG 305 (399)
T PLN02227 281 RATPEQVASYTLKLLRNRIPPA-VPG 305 (399)
T ss_pred cCCHHHHHHHHHHHHHhcCCCC-CCe
Confidence 3589999999999999864433 344
No 126
>PRK03887 methylated-DNA--protein-cysteine methyltransferase; Provisional
Probab=21.90 E-value=75 Score=19.33 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCcEEecchh
Q psy8930 13 AASHIIRAQRRGESQVAVPNG 33 (65)
Q Consensus 13 vA~~iv~ai~~~~~~v~iP~~ 33 (65)
.|+++-.|+.+|..-+.+|+.
T Consensus 123 aaRAVG~Al~~NP~~i~IPCH 143 (175)
T PRK03887 123 SPRAVGGAMKRNPYPIIVPCH 143 (175)
T ss_pred hHHHHHHHHHhCCCCCccCCe
Confidence 468888999999988888874
No 127
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=21.85 E-value=1.5e+02 Score=19.33 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecc
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVP 31 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP 31 (65)
.=|||+||++|.+-...+-..+++-
T Consensus 303 VGtpe~Va~~l~~~~~~Gv~~~~L~ 327 (346)
T TIGR03565 303 VGDPETVAARIREYQDLGIDTFILS 327 (346)
T ss_pred eCCHHHHHHHHHHHHHcCCcEEEec
Confidence 3689999999988888888887653
No 128
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.64 E-value=1.4e+02 Score=17.19 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhCCcEEecch
Q psy8930 11 KDAASHIIRAQRRGESQVAVPN 32 (65)
Q Consensus 11 e~vA~~iv~ai~~~~~~v~iP~ 32 (65)
+++++.+.+++.+++..+++..
T Consensus 20 ~~a~~~i~~~i~~~~~I~i~G~ 41 (177)
T cd05006 20 EQAAQLLAEALLNGGKILICGN 41 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 5688888888888888777653
No 129
>PF14756 Pdase_C33_assoc: Peptidase_C33-associated domain
Probab=21.59 E-value=75 Score=18.32 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQR 22 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~ 22 (65)
..+||+||.+|=+-++
T Consensus 94 r~tpeeva~kidqYlr 109 (147)
T PF14756_consen 94 RATPEEVAAKIDQYLR 109 (147)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4789999999855443
No 130
>PRK08508 biotin synthase; Provisional
Probab=21.48 E-value=1.9e+02 Score=18.30 Aligned_cols=25 Identities=8% Similarity=-0.005 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEec
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAV 30 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~i 30 (65)
+.+++|++.+.+-++...+-..+.+
T Consensus 38 ~~~s~eeI~~~a~~a~~~g~~~~~l 62 (279)
T PRK08508 38 KRKDIEQIVQEAKMAKANGALGFCL 62 (279)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 4589999999999888888777654
No 131
>PF08401 DUF1738: Domain of unknown function (DUF1738); InterPro: IPR013610 This region is found in a number of bacterial hypothetical proteins. Some members are annotated as being similar to replication primases, and in fact this region is often found together with the Toprim domain (IPR006171 from INTERPRO).
Probab=21.30 E-value=1.1e+02 Score=17.13 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhCCcEEecchh
Q psy8930 11 KDAASHIIRAQRRGESQVAVPNG 33 (65)
Q Consensus 11 e~vA~~iv~ai~~~~~~v~iP~~ 33 (65)
+.+++.|+++|+++...=.-||.
T Consensus 6 ~~it~~ii~~le~g~~pW~kpW~ 28 (125)
T PF08401_consen 6 QEITDKIIEALEKGTAPWQKPWS 28 (125)
T ss_pred HHHHHHHHHHHHhCCCCccCccc
Confidence 67899999999997444333443
No 132
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=21.29 E-value=48 Score=18.82 Aligned_cols=17 Identities=18% Similarity=0.306 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy8930 7 LLSPKDAASHIIRAQRR 23 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~ 23 (65)
.++|+.+|+.|.+++.+
T Consensus 107 ev~a~~~~~~I~~~v~~ 123 (131)
T PF08416_consen 107 EVDAEQPAEDIVSAVSK 123 (131)
T ss_dssp CTCTTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78899999999999865
No 133
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=21.16 E-value=1.2e+02 Score=22.30 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchh
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNG 33 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~ 33 (65)
.+++|.++.+..++.|++|+..|.+.+-
T Consensus 517 ~Im~p~~A~~~slerir~G~dTISVTGN 544 (741)
T TIGR00178 517 QILSPVEATRFSLARIRRGEDTISVTGN 544 (741)
T ss_pred EeeCHHHHHHHHHHHHHcCCCeEEEech
Confidence 5899999999999999999999998654
No 134
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=21.07 E-value=1.2e+02 Score=17.58 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy8930 7 LLSPKDAASHIIRAQRR 23 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~ 23 (65)
-.+++.+|+.+++++.+
T Consensus 120 g~p~~~~a~~~~~ai~~ 136 (165)
T cd02908 120 GYPLDEAARIALKTVRE 136 (165)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 47899999999988863
No 135
>KOG4513|consensus
Probab=21.06 E-value=1e+02 Score=21.49 Aligned_cols=23 Identities=13% Similarity=0.058 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 5 LGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
.|.|++-+||++.+++|++++..
T Consensus 384 qP~M~a~eva~ka~~~ie~G~~p 406 (531)
T KOG4513|consen 384 QPKMKALEVAEKARDAIESGKFP 406 (531)
T ss_pred ChhhhHHHHHHHHHHHHHcCCCC
Confidence 47899999999999999999663
No 136
>KOG3806|consensus
Probab=20.99 E-value=57 Score=19.90 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcEEe
Q psy8930 5 LGLLSPKDAASHIIRAQRRGESQVA 29 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~~~~~v~ 29 (65)
|.+++||+||+. .|.++|+....
T Consensus 98 Fkl~dp~eVArl--WG~rK~kp~MN 120 (177)
T KOG3806|consen 98 FKLVDPDEVARL--WGARKNKPNMN 120 (177)
T ss_pred EEecCHHHHHHH--HhhhhCCCCCC
Confidence 468999999995 58888887654
No 137
>KOG1557|consensus
Probab=20.92 E-value=1.1e+02 Score=20.57 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCcE
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
.-.+||++|...+.++++.-.-
T Consensus 241 ~K~tpe~iA~~TvtaLrrtVP~ 262 (363)
T KOG1557|consen 241 EKYTPEQIALATVTALRRTVPA 262 (363)
T ss_pred ccCCHHHHHHHHHHHHHhcCCC
Confidence 3578999999999999986543
No 138
>PLN02956 PSII-Q subunit
Probab=20.88 E-value=1.4e+02 Score=18.34 Aligned_cols=15 Identities=13% Similarity=-0.033 Sum_probs=12.2
Q ss_pred CCCCCCHHHHHHHHH
Q psy8930 4 LLGLLSPKDAASHII 18 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv 18 (65)
..|..+||++|..|-
T Consensus 76 ~~p~~speeA~ar~k 90 (185)
T PLN02956 76 TAPERTVEEAESGVR 90 (185)
T ss_pred cCCCCCHHHHHHHHH
Confidence 458999999988775
No 139
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=20.39 E-value=1.9e+02 Score=18.66 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecc
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVP 31 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP 31 (65)
.+++|++.+++-++...+-.++.+-
T Consensus 34 ~l~~eeI~~~a~~~~~~G~~ei~l~ 58 (322)
T TIGR03550 34 LLSPEEVLEILRKGAAAGCTEALFT 58 (322)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 6899999999999999998887653
No 140
>COG4240 Predicted kinase [General function prediction only]
Probab=20.23 E-value=1.2e+02 Score=19.79 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhCCcEEecchhhH
Q psy8930 10 PKDAASHIIRAQRRGESQVAVPNGLL 35 (65)
Q Consensus 10 pe~vA~~iv~ai~~~~~~v~iP~~~~ 35 (65)
--+.-..++++|.+|...|.+|++-.
T Consensus 118 D~tlglnVLnai~~g~~~V~lPrfDK 143 (300)
T COG4240 118 DPTLGLNVLNAIARGGPTVPLPRFDK 143 (300)
T ss_pred chHHHHHHHHHHhcCCCCcccccccc
Confidence 33466788999999999998998754
No 141
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=20.05 E-value=1.1e+02 Score=17.41 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHH
Q psy8930 8 LSPKDAASHIIRAQR 22 (65)
Q Consensus 8 l~pe~vA~~iv~ai~ 22 (65)
.+|+++|++|++.+.
T Consensus 144 ~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 144 SPPEEIAEEILEFLK 158 (158)
T ss_dssp CHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhC
Confidence 345999999998763
No 142
>PRK03839 putative kinase; Provisional
Probab=20.02 E-value=1.2e+02 Score=17.33 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHhCCc
Q psy8930 8 LSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~ 26 (65)
.+++++++.|.+.+..+..
T Consensus 138 ~s~eev~~~I~~~l~~~~~ 156 (180)
T PRK03839 138 KTPEEVVEEILELIKSGKK 156 (180)
T ss_pred CCHHHHHHHHHHHHhcCCC
Confidence 4789999999999886643
No 143
>PRK13658 hypothetical protein; Provisional
Probab=20.01 E-value=1.1e+02 Score=15.16 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=8.7
Q ss_pred CCCCHHHHHHHH
Q psy8930 6 GLLSPKDAASHI 17 (65)
Q Consensus 6 p~l~pe~vA~~i 17 (65)
+.+++..+|+.|
T Consensus 2 s~idaq~~A~RI 13 (59)
T PRK13658 2 SEFDAQRVAERI 13 (59)
T ss_pred CcccHHHHHHHH
Confidence 456777888776
Done!