Query psy8930
Match_columns 65
No_of_seqs 140 out of 1003
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 23:06:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xu9_A Corticosteroid 11-beta- 98.0 6.8E-06 2.3E-10 50.1 4.4 53 6-58 228-280 (286)
2 1yb1_A 17-beta-hydroxysteroid 97.5 0.00012 4.2E-09 44.3 4.4 42 6-47 230-271 (272)
3 3tjr_A Short chain dehydrogena 95.1 0.061 2.1E-06 32.9 5.5 29 6-34 248-276 (301)
4 3ioy_A Short-chain dehydrogena 87.9 0.61 2.1E-05 28.7 3.6 25 8-32 236-260 (319)
5 3u9l_A 3-oxoacyl-[acyl-carrier 80.6 3.1 0.00011 25.7 4.5 25 7-31 238-266 (324)
6 2drn_C 24-residues peptide fro 78.5 2.5 8.7E-05 17.0 2.4 16 9-24 2-17 (26)
7 3zxw_B Ribulose bisphosphate c 65.4 8.1 0.00028 21.2 3.2 24 4-27 15-38 (118)
8 1rbl_M Ribulose 1,5 bisphospha 64.6 8.8 0.0003 20.7 3.2 23 4-26 16-38 (109)
9 1svd_M Ribulose bisphosphate c 63.4 9.6 0.00033 20.6 3.3 24 4-27 18-41 (110)
10 1wdd_S Ribulose bisphosphate c 61.0 11 0.00038 20.9 3.3 23 4-26 17-39 (128)
11 3ew7_A LMO0794 protein; Q8Y8U8 59.3 9.2 0.00032 21.3 2.9 20 7-26 184-203 (221)
12 2z5l_A Tylkr1, tylactone synth 58.6 12 0.00042 24.7 3.7 27 5-31 452-478 (511)
13 3h2s_A Putative NADH-flavin re 57.4 11 0.00037 21.2 3.0 21 6-26 185-205 (224)
14 2yut_A Putative short-chain ox 56.3 8.7 0.0003 21.3 2.5 22 6-27 181-202 (207)
15 1bwv_S Rubisco, protein (ribul 56.2 15 0.0005 20.7 3.3 24 4-27 10-33 (138)
16 1gk8_I Ribulose bisphosphate c 55.7 15 0.00052 20.7 3.3 23 4-26 17-39 (140)
17 1bxn_I Rubisco, protein (ribul 55.2 15 0.00052 20.6 3.2 24 4-27 10-33 (139)
18 3p19_A BFPVVD8, putative blue 54.9 15 0.00053 21.7 3.5 22 7-28 219-240 (266)
19 3l6e_A Oxidoreductase, short-c 54.5 9.8 0.00034 22.0 2.5 23 6-28 196-218 (235)
20 2bd0_A Sepiapterin reductase; 53.4 16 0.00054 20.9 3.3 22 7-28 207-228 (244)
21 4f0h_B Ribulose bisphosphate c 50.7 20 0.00069 20.1 3.3 24 4-27 10-33 (138)
22 1sny_A Sniffer CG10964-PA; alp 50.6 12 0.0004 21.8 2.4 22 6-27 231-252 (267)
23 3e9n_A Putative short-chain de 50.4 18 0.00063 20.8 3.3 22 7-28 200-221 (245)
24 1jtv_A 17 beta-hydroxysteroid 49.1 43 0.0015 20.4 6.4 18 8-25 231-248 (327)
25 2ehd_A Oxidoreductase, oxidore 48.1 13 0.00046 21.1 2.4 20 7-26 197-216 (234)
26 3chv_A Prokaryotic domain of u 47.4 24 0.00083 21.9 3.6 24 7-30 30-53 (284)
27 1yo6_A Putative carbonyl reduc 46.7 14 0.00046 21.0 2.3 20 7-26 215-234 (250)
28 3c6c_A 3-keto-5-aminohexanoate 46.4 25 0.00086 22.2 3.6 24 7-30 44-67 (316)
29 3no5_A Uncharacterized protein 46.0 26 0.00091 21.6 3.6 24 7-30 26-49 (275)
30 2jah_A Clavulanic acid dehydro 45.3 30 0.001 20.0 3.6 21 8-28 215-235 (247)
31 3e49_A Uncharacterized protein 44.6 28 0.00096 21.9 3.6 24 7-30 28-51 (311)
32 1sby_A Alcohol dehydrogenase; 44.4 15 0.00051 21.3 2.2 20 6-25 210-229 (254)
33 3e02_A Uncharacterized protein 44.4 28 0.00097 21.9 3.6 24 7-30 28-51 (311)
34 3lot_A Uncharacterized protein 43.9 29 0.001 21.8 3.6 24 7-30 28-51 (314)
35 3tfo_A Putative 3-oxoacyl-(acy 42.8 31 0.001 20.4 3.5 21 7-27 208-228 (264)
36 2a35_A Hypothetical protein PA 41.8 15 0.00053 20.3 1.9 23 7-29 179-201 (215)
37 2y7e_A 3-keto-5-aminohexanoate 41.7 25 0.00084 21.8 3.0 24 7-30 30-53 (282)
38 3l77_A Short-chain alcohol deh 41.1 20 0.00069 20.4 2.4 22 6-27 198-219 (235)
39 3qp9_A Type I polyketide synth 41.0 34 0.0012 22.6 3.7 27 5-31 463-489 (525)
40 1xg5_A ARPG836; short chain de 40.7 35 0.0012 20.0 3.5 23 6-28 246-268 (279)
41 3dhn_A NAD-dependent epimerase 39.1 17 0.00059 20.4 1.9 19 7-25 191-209 (227)
42 3igz_B Cofactor-independent ph 38.9 30 0.001 23.7 3.2 23 5-27 393-415 (561)
43 1knq_A Gluconate kinase; ALFA/ 38.4 24 0.00081 19.1 2.3 18 8-25 158-175 (175)
44 2ggs_A 273AA long hypothetical 36.9 44 0.0015 19.1 3.5 22 6-27 182-203 (273)
45 3guy_A Short-chain dehydrogena 36.4 19 0.00065 20.5 1.8 23 6-28 192-214 (230)
46 1u7z_A Coenzyme A biosynthesis 36.2 12 0.00042 22.4 0.9 19 5-23 200-218 (226)
47 3m1a_A Putative dehydrogenase; 34.0 36 0.0012 19.9 2.8 20 7-26 222-241 (281)
48 3rku_A Oxidoreductase YMR226C; 33.8 33 0.0011 20.5 2.6 22 7-28 246-267 (287)
49 3h7a_A Short chain dehydrogena 33.1 27 0.00092 20.3 2.1 20 7-26 213-232 (252)
50 1iio_A Conserved hypothetical 32.6 27 0.00092 18.0 1.8 16 5-20 66-81 (84)
51 3d7l_A LIN1944 protein; APC893 32.5 47 0.0016 18.2 3.0 18 6-23 175-192 (202)
52 1via_A Shikimate kinase; struc 32.3 29 0.001 18.7 2.1 19 8-26 151-169 (175)
53 3tl4_X Glutaminyl-tRNA synthet 32.2 63 0.0021 18.8 3.5 59 7-65 116-187 (187)
54 3ejf_A Non-structural protein 31.5 60 0.0021 18.6 3.4 22 7-28 137-158 (176)
55 2fr1_A Erythromycin synthase, 30.5 33 0.0011 22.4 2.3 29 6-34 423-452 (486)
56 3nyw_A Putative oxidoreductase 30.1 52 0.0018 19.0 3.0 22 7-28 208-229 (250)
57 3qvo_A NMRA family protein; st 30.1 29 0.00098 19.8 1.8 19 7-25 194-212 (236)
58 3dqp_A Oxidoreductase YLBE; al 29.5 27 0.00094 19.5 1.7 21 5-25 169-189 (219)
59 4dry_A 3-oxoacyl-[acyl-carrier 29.1 74 0.0025 18.8 3.6 22 6-27 242-263 (281)
60 3trj_A Phosphoheptose isomeras 28.7 62 0.0021 18.4 3.1 23 10-32 32-54 (201)
61 1oaa_A Sepiapterin reductase; 28.5 55 0.0019 18.9 2.9 18 7-24 230-247 (259)
62 2bka_A CC3, TAT-interacting pr 28.4 30 0.001 19.5 1.7 20 7-26 200-219 (242)
63 3p04_A Uncharacterized BCR; SE 27.7 58 0.002 16.6 2.6 16 14-29 18-33 (87)
64 2nwq_A Probable short-chain de 27.7 59 0.002 19.2 3.0 20 7-26 229-248 (272)
65 3kb2_A SPBC2 prophage-derived 26.9 54 0.0018 17.3 2.5 16 8-23 151-166 (173)
66 3qay_A Endolysin; amidase A/B 26.5 48 0.0017 18.8 2.3 15 11-25 164-178 (180)
67 1rp3_B Anti sigma factor FLGM; 26.3 47 0.0016 16.8 2.1 15 7-21 73-87 (88)
68 3fdi_A Uncharacterized protein 26.2 59 0.002 18.4 2.7 17 7-23 182-198 (201)
69 3ff2_A Uncharacterized cystati 25.4 68 0.0023 16.0 2.7 19 8-26 2-20 (117)
70 1ooe_A Dihydropteridine reduct 25.2 46 0.0016 18.9 2.1 18 7-24 195-212 (236)
71 3ay3_A NAD-dependent epimerase 24.7 64 0.0022 18.5 2.7 19 7-25 178-196 (267)
72 3hjn_A DTMP kinase, thymidylat 24.6 48 0.0016 18.8 2.1 18 7-24 175-192 (197)
73 3uie_A Adenylyl-sulfate kinase 24.5 60 0.002 18.0 2.5 17 8-24 179-195 (200)
74 3asu_A Short-chain dehydrogena 24.4 70 0.0024 18.5 2.8 19 7-25 206-224 (248)
75 4dyv_A Short-chain dehydrogena 24.2 64 0.0022 19.0 2.7 21 6-26 233-253 (272)
76 2h92_A Cytidylate kinase; ross 24.1 68 0.0023 17.8 2.7 17 8-24 202-218 (219)
77 3e8x_A Putative NAD-dependent 23.4 37 0.0013 19.2 1.5 20 5-24 192-211 (236)
78 3jx9_A Putative phosphoheptose 23.1 93 0.0032 17.7 3.1 22 10-31 24-45 (170)
79 2pc4_A 41 kDa antigen, fructos 23.0 58 0.002 21.2 2.4 19 7-25 250-268 (369)
80 2pt5_A Shikimate kinase, SK; a 23.0 76 0.0026 16.7 2.7 18 8-25 148-165 (168)
81 3rkr_A Short chain oxidoreduct 22.5 72 0.0025 18.5 2.6 21 6-26 228-248 (262)
82 1zmo_A Halohydrin dehalogenase 22.4 55 0.0019 18.8 2.1 18 7-24 210-227 (244)
83 3mbd_A Fructose-bisphosphate a 22.1 62 0.0021 20.8 2.4 18 7-24 238-255 (342)
84 3gva_A Alkyltransferase-like p 22.1 45 0.0015 18.0 1.5 21 13-33 37-57 (116)
85 1hdo_A Biliverdin IX beta redu 22.1 22 0.00074 19.4 0.3 20 6-25 174-193 (206)
86 3hdt_A Putative kinase; struct 22.0 74 0.0025 18.5 2.6 18 7-24 202-219 (223)
87 3vaa_A Shikimate kinase, SK; s 21.6 50 0.0017 18.3 1.7 16 8-23 180-195 (199)
88 2v75_A Nuclear polyadenylated 21.3 1E+02 0.0035 16.3 2.8 20 8-27 26-45 (104)
89 2gdz_A NAD+-dependent 15-hydro 21.3 78 0.0027 18.3 2.6 18 7-24 221-238 (267)
90 3mmt_A Fructose-bisphosphate a 21.0 68 0.0023 20.7 2.4 18 7-24 239-256 (347)
91 3hls_A Guanylate cyclase solub 20.8 68 0.0023 15.4 1.9 17 37-53 48-64 (66)
92 3kx6_A Fructose-bisphosphate a 20.7 70 0.0024 20.9 2.4 19 7-25 262-280 (379)
93 3sc6_A DTDP-4-dehydrorhamnose 20.7 72 0.0025 18.4 2.4 23 7-29 188-210 (287)
94 1uay_A Type II 3-hydroxyacyl-C 20.6 82 0.0028 17.6 2.6 17 7-23 207-223 (242)
95 2z1m_A GDP-D-mannose dehydrata 20.6 54 0.0018 19.4 1.8 20 7-26 221-240 (345)
96 2dkn_A 3-alpha-hydroxysteroid 20.2 70 0.0024 18.0 2.2 19 6-24 213-231 (255)
97 2i9n_A MHB4A peptide; beta-hai 20.1 62 0.0021 13.2 1.4 16 9-24 18-33 (33)
No 1
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=98.02 E-value=6.8e-06 Score=50.10 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHHHHHHHHHhhcC
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDFLDS 58 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~~~~~~~~~~~~ 58 (65)
+.++||++|+.+++++.+++..+++|+....+..+.+++|..+.+.+.+.++.
T Consensus 228 ~~~~~~~vA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~ 280 (286)
T 1xu9_A 228 QAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPSRKILEFLYSTSYNM 280 (286)
T ss_dssp GCBCHHHHHHHHHHHHHTTCSEEEECSCHHHHHHSCCHHHHHHHHHHGGGBCC
T ss_pred CCCCHHHHHHHHHHHHhcCCceEEeccHHHHHHHHHHHChHHHHHHHHHHhCh
Confidence 56899999999999999999999999887788888889998777777777655
No 2
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=97.52 E-value=0.00012 Score=44.25 Aligned_cols=42 Identities=12% Similarity=0.372 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhhHHHHHHHhhCcHH
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLK 47 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~l~~llP~~ 47 (65)
+.++||++|+.+++++.+++..+++|+...+...+.+++|.+
T Consensus 230 ~~~~~~dva~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 271 (272)
T 1yb1_A 230 PTLEPEEVVNRLMHGILTEQKMIFIPSSIAFLTTLERILPEG 271 (272)
T ss_dssp CCCCHHHHHHHHHHHHHTTCSEEEECCCCCHHHHHHTTC---
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEECCchHHHHHHHHHhCCCC
Confidence 568999999999999999999999999888888999999964
No 3
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=95.11 E-value=0.061 Score=32.91 Aligned_cols=29 Identities=14% Similarity=-0.020 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEecchhh
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAVPNGL 34 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~iP~~~ 34 (65)
..++||+||+.+++++.+++..++.++..
T Consensus 248 ~~~~pedvA~~i~~~l~~~~~~i~~g~~~ 276 (301)
T 3tjr_A 248 ESVSADDVARLTADAILANRLYILPHAAA 276 (301)
T ss_dssp -CCCHHHHHHHHHHHHHHTCSEECCCTTH
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEecCHHH
Confidence 35799999999999999999988665544
No 4
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=87.89 E-value=0.61 Score=28.71 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHhCCcEEecch
Q psy8930 8 LSPKDAASHIIRAQRRGESQVAVPN 32 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~~v~iP~ 32 (65)
++||++|+.+++++.+++..++...
T Consensus 236 ~~pe~vA~~~~~al~~~~~~i~~~~ 260 (319)
T 3ioy_A 236 MEPDVIGARVIEAMKANRLHIFSHP 260 (319)
T ss_dssp BCHHHHHHHHHHHHHTTCSEECCCS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEcCH
Confidence 7999999999999999998886543
No 5
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=80.61 E-value=3.1 Score=25.67 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHhC----CcEEecc
Q psy8930 7 LLSPKDAASHIIRAQRRG----ESQVAVP 31 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~----~~~v~iP 31 (65)
..+|++||+.|++++... ...+.+.
T Consensus 238 ~~~p~~vA~aiv~~~~~~~~~~~~~~~~g 266 (324)
T 3u9l_A 238 DADVSLVADAIVRVVGTASGKRPFRVHVD 266 (324)
T ss_dssp TCCTHHHHHHHHHHHTSCTTCCCSEEEEC
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCeEEEeC
Confidence 478999999999999876 3455564
No 6
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=78.47 E-value=2.5 Score=16.98 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHhC
Q psy8930 9 SPKDAASHIIRAQRRG 24 (65)
Q Consensus 9 ~pe~vA~~iv~ai~~~ 24 (65)
+-|++|..|++++.++
T Consensus 2 sIEEaA~RIVdaVi~q 17 (26)
T 2drn_C 2 LIEEAASRIVDAVIEQ 17 (26)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4588999999988653
No 7
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=65.36 E-value=8.1 Score=21.16 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
.+|.++.|+++++|--.+.+|-..
T Consensus 15 yLP~Lt~eqI~kQV~yll~qGw~~ 38 (118)
T 3zxw_B 15 YLPPLSDAQIARQIQYAIDQGYHP 38 (118)
T ss_dssp CSCCCCHHHHHHHHHHHHHHTCEE
T ss_pred cCCCCCHHHHHHHHHHHHhCCCee
Confidence 479999999999999999887543
No 8
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=64.63 E-value=8.8 Score=20.71 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=20.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~ 26 (65)
.+|.++.|+++++|--.+.+|=.
T Consensus 16 yLP~lt~eqI~kQI~Yll~qGw~ 38 (109)
T 1rbl_M 16 YLPPLSDRQIAAQIEYMIEQGFH 38 (109)
T ss_dssp TSSCCCHHHHHHHHHHHHHHTCE
T ss_pred cCCCCCHHHHHHHHHHHHHCCCE
Confidence 47999999999999999998754
No 9
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=63.41 E-value=9.6 Score=20.58 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
.+|.++.|+++++|--.+.+|=..
T Consensus 18 yLP~lt~eqI~kQV~Yll~qGw~p 41 (110)
T 1svd_M 18 YLPPMNAERIRAQIKYAIAQGWSP 41 (110)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTCEE
T ss_pred cCCCCCHHHHHHHHHHHHHCCCee
Confidence 479999999999999999887543
No 10
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=61.03 E-value=11 Score=20.92 Aligned_cols=23 Identities=22% Similarity=0.052 Sum_probs=19.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~ 26 (65)
.+|.++.|+++++|-..+.+|=.
T Consensus 17 yLP~lt~eqI~kQI~Yll~qGw~ 39 (128)
T 1wdd_S 17 YLPPLTVEDLLKQIEYLLRSKWV 39 (128)
T ss_dssp TSSCCCHHHHHHHHHHHHHTTCE
T ss_pred cCCCCCHHHHHHHHHHHHHCCCe
Confidence 47999999999999988887644
No 11
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=59.27 E-value=9.2 Score=21.31 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q psy8930 7 LLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~ 26 (65)
.++++|+|+.+++++.+++.
T Consensus 184 ~i~~~Dva~~~~~~l~~~~~ 203 (221)
T 3ew7_A 184 FISMEDYAIAVLDEIERPNH 203 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCSC
T ss_pred eEeHHHHHHHHHHHHhCccc
Confidence 68899999999999998753
No 12
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}
Probab=58.63 E-value=12 Score=24.72 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcEEecc
Q psy8930 5 LGLLSPKDAASHIIRAQRRGESQVAVP 31 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~~~~~v~iP 31 (65)
+..++||++++.+.+++.+++..+++.
T Consensus 452 ~~~l~~e~~a~~l~~al~~~~~~v~v~ 478 (511)
T 2z5l_A 452 LRAMDPDAAVDALLGAMGRNDVCVTVV 478 (511)
T ss_dssp BCCBCHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 457899999999999999999887653
No 13
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=57.43 E-value=11 Score=21.16 Aligned_cols=21 Identities=10% Similarity=0.128 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCc
Q psy8930 6 GLLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~ 26 (65)
..++++++|+.+++++.+++.
T Consensus 185 ~~i~~~DvA~~~~~~l~~~~~ 205 (224)
T 3h2s_A 185 SHITTGNMALAILDQLEHPTA 205 (224)
T ss_dssp CBCCHHHHHHHHHHHHHSCCC
T ss_pred ceEeHHHHHHHHHHHhcCccc
Confidence 468999999999999998653
No 14
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Probab=56.33 E-value=8.7 Score=21.32 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCcE
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
..++||++|+.++..+.+++..
T Consensus 181 ~~~~~~dva~~~~~~~~~~~~~ 202 (207)
T 2yut_A 181 GALSPEEAARKVLEGLFREPVP 202 (207)
T ss_dssp TCBCHHHHHHHHHHHHC--CCC
T ss_pred CCCCHHHHHHHHHHHHhCCCCc
Confidence 4689999999999999877653
No 15
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=56.17 E-value=15 Score=20.70 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
.+|.++.|+++++|--.+.+|=..
T Consensus 10 yLP~ltdeqI~kQI~Yll~qGw~p 33 (138)
T 1bwv_S 10 FLPDLTDEQIKKQIDYMISKKLAI 33 (138)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTCEE
T ss_pred cCCCCCHHHHHHHHHHHHHCCCee
Confidence 479999999999999999887543
No 16
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=55.66 E-value=15 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=19.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~ 26 (65)
.+|.++.|+++++|-..+.+|=.
T Consensus 17 yLP~lt~eqI~kQI~YlL~qGw~ 39 (140)
T 1gk8_I 17 YLPPLTDEQIAAQVDYIVANGWI 39 (140)
T ss_dssp TSSCCCHHHHHHHHHHHHHTTCE
T ss_pred cCCCCCHHHHHHHHHHHHHCCCE
Confidence 47999999999999988887644
No 17
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=55.19 E-value=15 Score=20.64 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=20.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
.+|.++.|+++++|--.+.+|-..
T Consensus 10 yLP~ltdeqI~kQI~YlL~qGw~p 33 (139)
T 1bxn_I 10 FLPELTDEQITKQLEYCLNQGWAV 33 (139)
T ss_dssp TSSCCCHHHHHHHHHHHHHHTCEE
T ss_pred cCCCCCHHHHHHHHHHHHHCCCeE
Confidence 479999999999999999987553
No 18
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=54.95 E-value=15 Score=21.67 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHhCCcEE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v 28 (65)
..+||++|+.++..+.+++..+
T Consensus 219 ~~~pedvA~av~~l~~~~~~~~ 240 (266)
T 3p19_A 219 VLAADDVARAVLFAYQQPQNVC 240 (266)
T ss_dssp CBCHHHHHHHHHHHHHSCTTEE
T ss_pred CCCHHHHHHHHHHHHcCCCCcc
Confidence 5799999999999999887743
No 19
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=54.53 E-value=9.8 Score=22.03 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEE
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v 28 (65)
...+||++|+.++..+.++...+
T Consensus 196 ~~~~pedvA~~v~~l~~~~~~~~ 218 (235)
T 3l6e_A 196 GFMTPEDAAAYMLDALEARSSCH 218 (235)
T ss_dssp -CBCHHHHHHHHHHHTCCCSSEE
T ss_pred CCCCHHHHHHHHHHHHhCCCCcc
Confidence 35799999999999998666543
No 20
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2
Probab=53.45 E-value=16 Score=20.88 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHhCCcEE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v 28 (65)
..+||++|+.++..+..+...+
T Consensus 207 ~~~~~dva~~~~~l~~~~~~~~ 228 (244)
T 2bd0_A 207 MMMPEDIAAPVVQAYLQPSRTV 228 (244)
T ss_dssp SBCHHHHHHHHHHHHTSCTTEE
T ss_pred CCCHHHHHHHHHHHHhCCcccc
Confidence 5799999999999998776654
No 21
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=50.70 E-value=20 Score=20.13 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 4 LLGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 4 ~~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
.+|.++.|+++++|-..+.+|-..
T Consensus 10 yLP~ltd~qI~kQI~YlL~qGw~~ 33 (138)
T 4f0h_B 10 FLPDLTDEQIKKQIDYMISKKLAI 33 (138)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTCEE
T ss_pred cCCCCCHHHHHHHHHHHHhCCCEE
Confidence 579999999999999988887543
No 22
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2
Probab=50.62 E-value=12 Score=21.76 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCcE
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
..++||++|+.+++.+.++...
T Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~ 252 (267)
T 1sny_A 231 APLDVPTSTGQIVQTISKLGEK 252 (267)
T ss_dssp CSBCHHHHHHHHHHHHHHCCGG
T ss_pred CCCCHHHHHHHHHHHHHhcCcC
Confidence 3579999999999999876543
No 23
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}
Probab=50.44 E-value=18 Score=20.77 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHhCCcEE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v 28 (65)
.++||++|+.++..+..++...
T Consensus 200 ~~~p~dvA~~i~~l~~~~~~~~ 221 (245)
T 3e9n_A 200 YIEPKEIANAIRFVIDAGETTQ 221 (245)
T ss_dssp GSCHHHHHHHHHHHHTSCTTEE
T ss_pred CCCHHHHHHHHHHHHcCCCccc
Confidence 4799999999999998877643
No 24
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Probab=49.07 E-value=43 Score=20.42 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHHhCC
Q psy8930 8 LSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~ 25 (65)
.+||++|+.++..+.+++
T Consensus 231 ~~pedvA~~i~~l~~~~~ 248 (327)
T 1jtv_A 231 QNPEEVAEVFLTALRAPK 248 (327)
T ss_dssp BCHHHHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 589999999999998754
No 25
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=48.07 E-value=13 Score=21.10 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q psy8930 7 LLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~ 26 (65)
.++||++|+.++..+..+..
T Consensus 197 ~~~~~dvA~~~~~l~~~~~~ 216 (234)
T 2ehd_A 197 KLKPEDVAQAVLFALEMPGH 216 (234)
T ss_dssp -CCHHHHHHHHHHHHHSCCS
T ss_pred CCCHHHHHHHHHHHhCCCcc
Confidence 47999999999999986644
No 26
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=47.41 E-value=24 Score=21.89 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEec
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAV 30 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~i 30 (65)
.++||+.|+..+++.+.|...+.+
T Consensus 30 PvTpeEia~~A~~~~~AGAaivHl 53 (284)
T 3chv_A 30 PITVSEQVESTQEAFEAGAAIAHC 53 (284)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEe
Confidence 589999999999999999999886
No 27
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=46.72 E-value=14 Score=21.02 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q psy8930 7 LLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~ 26 (65)
.++||++|+.++..+..+..
T Consensus 215 ~~~~~~~a~~~~~~~~~~~~ 234 (250)
T 1yo6_A 215 ALTVEQSTAELISSFNKLDN 234 (250)
T ss_dssp ----HHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHhcccc
Confidence 57899999999999987653
No 28
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=46.40 E-value=25 Score=22.21 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEec
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAV 30 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~i 30 (65)
.++||+.|+..+++.+.|...+.+
T Consensus 44 PvTpeEIa~~A~~a~~AGAaivHl 67 (316)
T 3c6c_A 44 PITPAQIADACVEAAKAGASVAHI 67 (316)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 579999999999999999999876
No 29
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=45.97 E-value=26 Score=21.57 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEec
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAV 30 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~i 30 (65)
.++||+.|+..+++.+.|...+.+
T Consensus 26 PvTpeEia~~A~~~~~AGAaivHl 49 (275)
T 3no5_A 26 PITVSEQVESTQAAFEAGATLVHL 49 (275)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHccCcEEEE
Confidence 589999999999999999998876
No 30
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=45.25 E-value=30 Score=20.00 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHhCCcEE
Q psy8930 8 LSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~~v 28 (65)
.+||++|+.++..+..+...+
T Consensus 215 ~~pedvA~~v~~l~s~~~~~~ 235 (247)
T 2jah_A 215 LQAQDIAEAVRYAVTAPHHAT 235 (247)
T ss_dssp BCHHHHHHHHHHHHHSCTTEE
T ss_pred CCHHHHHHHHHHHhCCCccCc
Confidence 799999999999888765543
No 31
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=44.65 E-value=28 Score=21.88 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEec
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAV 30 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~i 30 (65)
.++||+.|+..+++.+.|...+.+
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHl 51 (311)
T 3e49_A 28 PVTPDEVAQASIGAAEAGAAVIHL 51 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 589999999999999999998876
No 32
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Probab=44.45 E-value=15 Score=21.27 Aligned_cols=20 Identities=5% Similarity=0.179 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC
Q psy8930 6 GLLSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~ 25 (65)
|..+||++|+.++..+.++.
T Consensus 210 ~~~~~~dvA~~i~~~~~~~~ 229 (254)
T 1sby_A 210 PTQTSEQCGQNFVKAIEANK 229 (254)
T ss_dssp CCEEHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 55689999999999887644
No 33
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=44.44 E-value=28 Score=21.85 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEec
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAV 30 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~i 30 (65)
.++||+.|+..+++.+.|...+.+
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHl 51 (311)
T 3e02_A 28 PITPEEIVKEGVAAAEAGAAMLHL 51 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 589999999999999999998876
No 34
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=43.92 E-value=29 Score=21.85 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEec
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAV 30 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~i 30 (65)
.++||+.|+..+++.+.|...+.+
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHl 51 (314)
T 3lot_A 28 PVTPDQIVEEAVKAAEAGAGMVHI 51 (314)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 689999999999999999998875
No 35
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=42.75 E-value=31 Score=20.44 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHhCCcE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~ 27 (65)
..+||++|+.++..+..+...
T Consensus 208 ~~~pedvA~~v~~l~s~~~~~ 228 (264)
T 3tfo_A 208 ALQPADIARAVRQVIEAPQSV 228 (264)
T ss_dssp CCCHHHHHHHHHHHHHSCTTE
T ss_pred CCCHHHHHHHHHHHhcCCccC
Confidence 369999999999999987753
No 36
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=41.80 E-value=15 Score=20.31 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEe
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVA 29 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~ 29 (65)
.++++++|+.+++++.++...++
T Consensus 179 ~i~~~Dva~~~~~~~~~~~~~~~ 201 (215)
T 2a35_A 179 GIEACDLARALWRLALEEGKGVR 201 (215)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEE
T ss_pred cEeHHHHHHHHHHHHhcCCCCce
Confidence 36789999999999998765443
No 37
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=41.73 E-value=25 Score=21.83 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEec
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAV 30 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~i 30 (65)
.++||+.|+..+++.+.|...+.+
T Consensus 30 PvTpeEia~~A~~a~~AGAaivHl 53 (282)
T 2y7e_A 30 PITPEEQAKEAKACFEAGARVIHL 53 (282)
T ss_dssp CCSHHHHHHHHHHHHHHTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 579999999999999999998876
No 38
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=41.08 E-value=20 Score=20.36 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCcE
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
...+||++|+.++..+..+...
T Consensus 198 ~~~~p~dva~~v~~l~~~~~~~ 219 (235)
T 3l77_A 198 GYLKPDEIAEAVRCLLKLPKDV 219 (235)
T ss_dssp TCBCHHHHHHHHHHHHTSCTTC
T ss_pred CCCCHHHHHHHHHHHHcCCCCC
Confidence 3579999999999988876653
No 39
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}
Probab=40.95 E-value=34 Score=22.64 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcEEecc
Q psy8930 5 LGLLSPKDAASHIIRAQRRGESQVAVP 31 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~~~~~v~iP 31 (65)
+..++||++++.+.+++..+...+.+.
T Consensus 463 ~~~l~pee~a~~l~~~l~~~~~~v~v~ 489 (525)
T 3qp9_A 463 LRPLAPATALTALDTALGHGDTAVTIA 489 (525)
T ss_dssp BCCBCHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 356899999999999999999887654
No 40
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=40.69 E-value=35 Score=19.96 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEE
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v 28 (65)
...+||++|+.++..+..+....
T Consensus 246 ~~~~~~dvA~~i~~l~~~~~~~~ 268 (279)
T 1xg5_A 246 KCLKPEDVAEAVIYVLSTPAHIQ 268 (279)
T ss_dssp -CBCHHHHHHHHHHHHHSCTTEE
T ss_pred cCCCHHHHHHHHHHHhcCCcceE
Confidence 35799999999999988766543
No 41
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=39.10 E-value=17 Score=20.37 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q psy8930 7 LLSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~ 25 (65)
.++.+|+|+.++.++.+++
T Consensus 191 ~i~~~Dva~ai~~~l~~~~ 209 (227)
T 3dhn_A 191 HISVEDYAAAMIDELEHPK 209 (227)
T ss_dssp EEEHHHHHHHHHHHHHSCC
T ss_pred EEeHHHHHHHHHHHHhCcc
Confidence 4789999999999999876
No 42
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* 3nvl_A
Probab=38.95 E-value=30 Score=23.70 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcE
Q psy8930 5 LGLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
-|.++++++++++++++++++..
T Consensus 393 ~Pemsa~ev~d~~i~al~~~~~D 415 (561)
T 3igz_B 393 KPRMQSAAITEAAIEALKSGMYN 415 (561)
T ss_dssp STTTTHHHHHHHHHHHHHHSCCS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCC
Confidence 38899999999999999987553
No 43
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=38.36 E-value=24 Score=19.06 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHhCC
Q psy8930 8 LSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~ 25 (65)
.++++++++|.+.+..++
T Consensus 158 ~~~~~~~~~i~~~l~~~~ 175 (175)
T 1knq_A 158 QPLEGVVASTIEVIKKGK 175 (175)
T ss_dssp SCHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 489999999999887664
No 44
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}
Probab=36.87 E-value=44 Score=19.12 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCcE
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
..++++++|+.++..+.++...
T Consensus 182 ~~~~~~dva~~i~~~~~~~~~g 203 (273)
T 2ggs_A 182 SPISARKLASAILELLELRKTG 203 (273)
T ss_dssp CCCBHHHHHHHHHHHHHHTCCE
T ss_pred CceEHHHHHHHHHHHHhcCcCC
Confidence 4678999999999999876543
No 45
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=36.38 E-value=19 Score=20.49 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEE
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v 28 (65)
...+||++|+.++..+.++....
T Consensus 192 ~~~~~~dvA~~i~~l~~~~~~~~ 214 (230)
T 3guy_A 192 SFMSAEDAALMIHGALANIGNGY 214 (230)
T ss_dssp -CCCHHHHHHHHHHHCCEETTEE
T ss_pred cCCCHHHHHHHHHHHHhCcCCCC
Confidence 35799999999998887655544
No 46
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=36.23 E-value=12 Score=22.39 Aligned_cols=19 Identities=11% Similarity=-0.018 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy8930 5 LGLLSPKDAASHIIRAQRR 23 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~ 23 (65)
+|..+++++|+.|++.+.+
T Consensus 200 ~~~~sK~~vA~~I~~~i~~ 218 (226)
T 1u7z_A 200 LPLERKELLGQLLLDEIVT 218 (226)
T ss_dssp EEEEEHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999864
No 47
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=33.97 E-value=36 Score=19.90 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q psy8930 7 LLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~ 26 (65)
..+|+++|+.++.++.++..
T Consensus 222 ~~~~~dva~a~~~~~~~~~~ 241 (281)
T 3m1a_A 222 PGDPAKAAAAIRLALDTEKT 241 (281)
T ss_dssp CBCHHHHHHHHHHHHHSSSC
T ss_pred CCCHHHHHHHHHHHHhCCCC
Confidence 57899999999999988764
No 48
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=33.76 E-value=33 Score=20.53 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHhCCcEE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v 28 (65)
.++||++|+.++..+..+...+
T Consensus 246 p~~pedvA~~v~~l~s~~~~~i 267 (287)
T 3rku_A 246 PLMADDVADLIVYATSRKQNTV 267 (287)
T ss_dssp CEEHHHHHHHHHHHHTSCTTEE
T ss_pred CCCHHHHHHHHHHHhCCCCCeE
Confidence 3589999999999998776643
No 49
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=33.12 E-value=27 Score=20.35 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q psy8930 7 LLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~ 26 (65)
..+||++|+.++..+..+..
T Consensus 213 ~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 213 LMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp -CCHHHHHHHHHHHHHCCGG
T ss_pred CCCHHHHHHHHHHHHhCchh
Confidence 68999999999998886554
No 50
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=32.63 E-value=27 Score=17.99 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=13.6
Q ss_pred CCCCCHHHHHHHHHHH
Q psy8930 5 LGLLSPKDAASHIIRA 20 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~a 20 (65)
||.-+++++|..|+..
T Consensus 66 FP~ksA~~lAd~iv~r 81 (84)
T 1iio_A 66 FPFKSAEEVADTIVNK 81 (84)
T ss_dssp SBCSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6888999999999864
No 51
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=32.47 E-value=47 Score=18.19 Aligned_cols=18 Identities=6% Similarity=-0.112 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy8930 6 GLLSPKDAASHIIRAQRR 23 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~ 23 (65)
..+++|++|+.++..+.+
T Consensus 175 ~~~~~~dva~~~~~~~~~ 192 (202)
T 3d7l_A 175 LPVPAAKVARAFEKSVFG 192 (202)
T ss_dssp CCBCHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHhhhc
Confidence 468999999999988854
No 52
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=32.28 E-value=29 Score=18.75 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHhCCc
Q psy8930 8 LSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~ 26 (65)
.++|++++.|.+.+.++-.
T Consensus 151 ~~~eev~~~I~~~l~~~~~ 169 (175)
T 1via_A 151 KNIDELLSEIKKVIKEGGS 169 (175)
T ss_dssp CCHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhcCc
Confidence 6899999999998877643
No 53
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=32.22 E-value=63 Score=18.84 Aligned_cols=59 Identities=7% Similarity=0.085 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEecchhhHHHHH---HHh--hCcH--------HHHHHHHHhhcCCCCCcCC
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVAVPNGLLHVNN---FCR--LMPL--------KVARILKDFLDSGVDSDLL 65 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~iP~~~~~~~~---l~~--llP~--------~~~~~~~~~~~~~~~~~~~ 65 (65)
.+++|++-+.+-+.|.+++..+.--+|-.+..+ +.. -+|+ -+...+..++|-..++|++
T Consensus 116 ~VT~EqI~~~V~~~i~~~k~~i~~~RY~~~g~ll~~vr~~p~LkWAd~~~vK~~vD~~~l~lLGPKte~D~~ 187 (187)
T 3tl4_X 116 EITEDQVRNYVMQYIQENKERILTERYKLVPGIFADVKNLKELKWADPRSFKPIIDQEVLKLLGPKDERDLI 187 (187)
T ss_dssp CCCHHHHHHHHHHHHHHTHHHHHHHGGGGHHHHHHHHHTCGGGTTSCTTSHHHHHHHHHHHHHCSCCGGGCC
T ss_pred EeCHHHHHHHHHHHHHHhHHHHHHhccccHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHcCCccccccC
Confidence 589999999999999998877643333222222 222 2332 2233556677887777753
No 54
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=31.51 E-value=60 Score=18.63 Aligned_cols=22 Identities=14% Similarity=-0.073 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHhCCcEE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v 28 (65)
-.+++++|+.++++++...-.+
T Consensus 137 g~P~~~aA~ia~~~v~~~~v~v 158 (176)
T 3ejf_A 137 GVDFKMSIDAMREAFEGCTIRV 158 (176)
T ss_dssp TCCHHHHHHHHHHHHTTCCCEE
T ss_pred CCCHHHHHHHHHHHhhhcceEE
Confidence 4678999999999999755443
No 55
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Probab=30.50 E-value=33 Score=22.43 Aligned_cols=29 Identities=21% Similarity=0.116 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEec-chhh
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQVAV-PNGL 34 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~v~i-P~~~ 34 (65)
..+++|++++.+.+++.+++..+.+ +..+
T Consensus 423 ~~i~~e~~a~~l~~~l~~~~~~~~v~~~d~ 452 (486)
T 2fr1_A 423 IEMPPETACRALQNALDRAEVCPIVIDVRW 452 (486)
T ss_dssp ECBCHHHHHHHHHHHHHTTCSSCEECEECH
T ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 4689999999999999988776543 4334
No 56
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=30.09 E-value=52 Score=19.04 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHhCCcEE
Q psy8930 7 LLSPKDAASHIIRAQRRGESQV 28 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v 28 (65)
..+||++|+.++..+..+...+
T Consensus 208 ~~~p~dva~~v~~l~s~~~~~~ 229 (250)
T 3nyw_A 208 MIQPDDLLNTIRCLLNLSENVC 229 (250)
T ss_dssp SBCHHHHHHHHHHHHTSCTTEE
T ss_pred CCCHHHHHHHHHHHHcCCCceE
Confidence 5799999999998888666543
No 57
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=30.05 E-value=29 Score=19.81 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q psy8930 7 LLSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~ 25 (65)
.++++|+|+.++..+..+.
T Consensus 194 ~i~~~DvA~~i~~ll~~~~ 212 (236)
T 3qvo_A 194 IVSRKSVAALITDIIDKPE 212 (236)
T ss_dssp EEEHHHHHHHHHHHHHSTT
T ss_pred EECHHHHHHHHHHHHcCcc
Confidence 4799999999999998765
No 58
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=29.53 E-value=27 Score=19.51 Aligned_cols=21 Identities=14% Similarity=-0.050 Sum_probs=17.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC
Q psy8930 5 LGLLSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~~~ 25 (65)
...++++++|+.++.++.++.
T Consensus 169 ~~~i~~~Dva~~i~~~l~~~~ 189 (219)
T 3dqp_A 169 SASNTIGDVADTIKELVMTDH 189 (219)
T ss_dssp CCCEEHHHHHHHHHHHHTCGG
T ss_pred CCcccHHHHHHHHHHHHhCcc
Confidence 357889999999999998754
No 59
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=29.08 E-value=74 Score=18.80 Aligned_cols=22 Identities=9% Similarity=-0.013 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCcE
Q psy8930 6 GLLSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~~ 27 (65)
+..+||++|+.++-.+......
T Consensus 242 ~~~~pedvA~~v~fL~s~~~~~ 263 (281)
T 4dry_A 242 PTIPIEHIAEAVVYMASLPLSA 263 (281)
T ss_dssp CCBCHHHHHHHHHHHHHSCTTE
T ss_pred CCCCHHHHHHHHHHHhCCCccC
Confidence 4679999999999888876654
No 60
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=28.73 E-value=62 Score=18.39 Aligned_cols=23 Identities=17% Similarity=0.227 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhCCcEEecch
Q psy8930 10 PKDAASHIIRAQRRGESQVAVPN 32 (65)
Q Consensus 10 pe~vA~~iv~ai~~~~~~v~iP~ 32 (65)
-+++++.+.+++.++++.+++..
T Consensus 32 i~~a~~~i~~al~~~~~I~i~G~ 54 (201)
T 3trj_A 32 IAQAAKAMVSCLENGGKVLVCGN 54 (201)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeC
Confidence 46788999999999988887753
No 61
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*
Probab=28.54 E-value=55 Score=18.86 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHhC
Q psy8930 7 LLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~ 24 (65)
..+||++|+.++..+...
T Consensus 230 ~~~p~dvA~~v~~l~~~~ 247 (259)
T 1oaa_A 230 LVDCGTSAQKLLGLLQKD 247 (259)
T ss_dssp SBCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhhc
Confidence 578999999999888753
No 62
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=28.42 E-value=30 Score=19.53 Aligned_cols=20 Identities=5% Similarity=0.029 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q psy8930 7 LLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~ 26 (65)
.++++++|+.++..+.++..
T Consensus 200 ~~~~~dva~~~~~~~~~~~~ 219 (242)
T 2bka_A 200 SVPVVTVVRAMLNNVVRPRD 219 (242)
T ss_dssp EEEHHHHHHHHHHHHTSCCC
T ss_pred ccCHHHHHHHHHHHHhCccc
Confidence 47899999999999987654
No 63
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=27.70 E-value=58 Score=16.63 Aligned_cols=16 Identities=38% Similarity=0.279 Sum_probs=13.5
Q ss_pred HHHHHHHHHhCCcEEe
Q psy8930 14 ASHIIRAQRRGESQVA 29 (65)
Q Consensus 14 A~~iv~ai~~~~~~v~ 29 (65)
|+.|.+.++.++..+.
T Consensus 18 a~~I~d~Lr~~~~Vvv 33 (87)
T 3p04_A 18 AQVIGGAFRDGDAVVF 33 (87)
T ss_dssp HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHCCCEEEE
Confidence 5789999999998875
No 64
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=27.67 E-value=59 Score=19.20 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q psy8930 7 LLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~ 26 (65)
..+||++|+.++..+..+..
T Consensus 229 ~~~pedvA~~v~~l~s~~~~ 248 (272)
T 2nwq_A 229 PIQPEDIAETIFWIMNQPAH 248 (272)
T ss_dssp CBCHHHHHHHHHHHHTSCTT
T ss_pred CCCHHHHHHHHHHHhCCCcc
Confidence 47999999999998876543
No 65
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=26.88 E-value=54 Score=17.26 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHHh
Q psy8930 8 LSPKDAASHIIRAQRR 23 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~ 23 (65)
.++|+++++|.+.+.+
T Consensus 151 ~~~~ev~~~I~~~~~~ 166 (173)
T 3kb2_A 151 WSSDEIAKDIIFLVEL 166 (173)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC
Confidence 5899999999998876
No 66
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=26.49 E-value=48 Score=18.77 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhCC
Q psy8930 11 KDAASHIIRAQRRGE 25 (65)
Q Consensus 11 e~vA~~iv~ai~~~~ 25 (65)
+.+|++|.+||.+.+
T Consensus 164 ~~iA~aIa~gI~~~~ 178 (180)
T 3qay_A 164 EGIAKLIVEGVLNKN 178 (180)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcCc
Confidence 679999999998753
No 67
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=26.34 E-value=47 Score=16.77 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHH
Q psy8930 7 LLSPKDAASHIIRAQ 21 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai 21 (65)
.++++.+|+.+++..
T Consensus 73 ~vd~~~iA~kml~~~ 87 (88)
T 1rp3_B 73 EVSDEKVVKGLIEFF 87 (88)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 468899999988753
No 68
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=26.23 E-value=59 Score=18.44 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy8930 7 LLSPKDAASHIIRAQRR 23 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~ 23 (65)
.+++|++++.|++.+.+
T Consensus 182 ~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 182 KVDVDTATDMIIKYIDS 198 (201)
T ss_dssp SSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 47899999999998865
No 69
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=25.38 E-value=68 Score=15.98 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHhCCc
Q psy8930 8 LSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~ 26 (65)
++|++++++.+++..++-.
T Consensus 2 m~~~~~v~~~~~a~n~~D~ 20 (117)
T 3ff2_A 2 MSNLETAKAMIAAYNAQDV 20 (117)
T ss_dssp CCHHHHHHHHHHHHHTTCH
T ss_pred cCHHHHHHHHHHHHcccCH
Confidence 6889999999998876553
No 70
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=25.15 E-value=46 Score=18.89 Aligned_cols=18 Identities=6% Similarity=0.039 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHHhC
Q psy8930 7 LLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~ 24 (65)
..+||++|+.++..+..+
T Consensus 195 ~~~~~dvA~~i~~~l~s~ 212 (236)
T 1ooe_A 195 WTPLSFISEHLLKWTTET 212 (236)
T ss_dssp CBCHHHHHHHHHHHHHCG
T ss_pred cCCHHHHHHHHHHHHcCC
Confidence 478999999999888543
No 71
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}
Probab=24.67 E-value=64 Score=18.54 Aligned_cols=19 Identities=26% Similarity=0.102 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q psy8930 7 LLSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~ 25 (65)
.++++++|+.+++++.++.
T Consensus 178 ~~~~~dva~~~~~~~~~~~ 196 (267)
T 3ay3_A 178 WLSVDDFMRLMKRAFVAPK 196 (267)
T ss_dssp BCCHHHHHHHHHHHHHSSC
T ss_pred cccHHHHHHHHHHHHhCCC
Confidence 4789999999999998765
No 72
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=24.65 E-value=48 Score=18.81 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHHHhC
Q psy8930 7 LLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~ 24 (65)
.-++|+|.+.|++.|.+.
T Consensus 175 ~~~~eeV~~~I~~~i~~r 192 (197)
T 3hjn_A 175 KRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp TSCHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 358999999999998753
No 73
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=24.53 E-value=60 Score=18.00 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHhC
Q psy8930 8 LSPKDAASHIIRAQRRG 24 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~ 24 (65)
+++|+++++|++.+...
T Consensus 179 ~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 179 TSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 68999999999988653
No 74
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Probab=24.37 E-value=70 Score=18.45 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q psy8930 7 LLSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~ 25 (65)
.++||++|+.++..+....
T Consensus 206 ~~~p~dvA~~v~~l~s~~~ 224 (248)
T 3asu_A 206 ALTPEDVSEAVWWVSTLPA 224 (248)
T ss_dssp CBCHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHhcCCc
Confidence 4699999999998887643
No 75
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=24.18 E-value=64 Score=19.02 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCc
Q psy8930 6 GLLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~ 26 (65)
+..+||++|+.++-.+..+..
T Consensus 233 ~~~~pedvA~~v~fL~s~~~~ 253 (272)
T 4dyv_A 233 PVMDVAHVASAVVYMASLPLD 253 (272)
T ss_dssp ---CHHHHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCc
Confidence 467999999999988886554
No 76
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=24.08 E-value=68 Score=17.85 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHhC
Q psy8930 8 LSPKDAASHIIRAQRRG 24 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~ 24 (65)
.+++++++.|.+.+.+.
T Consensus 202 ~~~ee~~~~I~~~l~~~ 218 (219)
T 2h92_A 202 KSIEEVTDEILAMVSQI 218 (219)
T ss_dssp CCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 58899999998887654
No 77
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=23.45 E-value=37 Score=19.21 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC
Q psy8930 5 LGLLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 5 ~p~l~pe~vA~~iv~ai~~~ 24 (65)
...++++++|+.++.++.++
T Consensus 192 ~~~i~~~Dva~~~~~~~~~~ 211 (236)
T 3e8x_A 192 TRSITRHDVAKVIAELVDQQ 211 (236)
T ss_dssp CCCEEHHHHHHHHHHHTTCG
T ss_pred cCcEeHHHHHHHHHHHhcCc
Confidence 45689999999999999875
No 78
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=23.13 E-value=93 Score=17.67 Aligned_cols=22 Identities=9% Similarity=-0.142 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhCCcEEecc
Q psy8930 10 PKDAASHIIRAQRRGESQVAVP 31 (65)
Q Consensus 10 pe~vA~~iv~ai~~~~~~v~iP 31 (65)
-+++|+.+.+++..+.....+.
T Consensus 24 I~~AA~llaqai~~~g~IyvfG 45 (170)
T 3jx9_A 24 LFDVVRLLAQALVGQGKVYLDA 45 (170)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEC
Confidence 4789999999999877776553
No 79
>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery, structu genomics, PSI, protein structure initiative; 2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A
Probab=23.01 E-value=58 Score=21.20 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q psy8930 7 LLSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~ 25 (65)
-.+||+||...++++++..
T Consensus 250 k~s~e~vA~~Tv~~L~rtv 268 (369)
T 2pc4_A 250 KTTTQDVGFLTVRTLRRTV 268 (369)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhcC
Confidence 4689999999999998753
No 80
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=22.99 E-value=76 Score=16.70 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHHHHhCC
Q psy8930 8 LSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~ 25 (65)
.++|++++.|.+.+.++.
T Consensus 148 ~~~~~~~~~i~~~l~~~~ 165 (168)
T 2pt5_A 148 KPPEEVVKEILLSLEGNA 165 (168)
T ss_dssp SCHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 589999999999887653
No 81
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=22.48 E-value=72 Score=18.47 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCc
Q psy8930 6 GLLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~~ 26 (65)
..++||++|+.++..+.....
T Consensus 228 ~~~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 228 GAIEPDDIADVVALLATQADQ 248 (262)
T ss_dssp -CCCHHHHHHHHHHHHTCCTT
T ss_pred cCCCHHHHHHHHHHHhcCccc
Confidence 357999999999887765444
No 82
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}
Probab=22.35 E-value=55 Score=18.77 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHHHhC
Q psy8930 7 LLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~ 24 (65)
..+||++|+.++..+...
T Consensus 210 ~~~pe~vA~~v~~l~s~~ 227 (244)
T 1zmo_A 210 LGRPDEMGALITFLASRR 227 (244)
T ss_dssp CBCHHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 568999999998877643
No 83
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base; 2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
Probab=22.14 E-value=62 Score=20.84 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHhC
Q psy8930 7 LLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~ 24 (65)
-.+||+||...++++++.
T Consensus 238 k~s~eeVA~~Tv~~L~rt 255 (342)
T 3mbd_A 238 KYTPKKVATFTLRALLST 255 (342)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 568999999999999874
No 84
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=22.12 E-value=45 Score=17.98 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCcEEecchh
Q psy8930 13 AASHIIRAQRRGESQVAVPNG 33 (65)
Q Consensus 13 vA~~iv~ai~~~~~~v~iP~~ 33 (65)
.|+++-.|+.+|...+.+|+.
T Consensus 37 aaRaVG~Al~~Np~~i~IPCH 57 (116)
T 3gva_A 37 YARQVGQAMKHLHPETHVPWH 57 (116)
T ss_dssp CHHHHHHHHHTSCTTCSSCGG
T ss_pred cHHHHHHHHHhCCCCcCCCce
Confidence 577888899999988888874
No 85
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=22.10 E-value=22 Score=19.43 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC
Q psy8930 6 GLLSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~~ 25 (65)
..++++++|+.++..+.++.
T Consensus 174 ~~i~~~Dva~~~~~~~~~~~ 193 (206)
T 1hdo_A 174 RVISKHDLGHFMLRCLTTDE 193 (206)
T ss_dssp SEEEHHHHHHHHHHTTSCST
T ss_pred CccCHHHHHHHHHHHhcCcc
Confidence 45789999999999987653
No 86
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=22.03 E-value=74 Score=18.55 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHHhC
Q psy8930 7 LLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~ 24 (65)
.+++|++++.|++.+.+.
T Consensus 202 ~l~~eevv~~I~~~i~~~ 219 (223)
T 3hdt_A 202 KLTLEETAELIKAYIRLK 219 (223)
T ss_dssp TCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 478999999999998764
No 87
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=21.60 E-value=50 Score=18.33 Aligned_cols=16 Identities=6% Similarity=0.055 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHh
Q psy8930 8 LSPKDAASHIIRAQRR 23 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~ 23 (65)
.++++++++|++.+.+
T Consensus 180 ~s~ee~~~~I~~~l~~ 195 (199)
T 3vaa_A 180 LEDRWQIESSVQRLQE 195 (199)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4789999999888764
No 88
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=21.31 E-value=1e+02 Score=16.33 Aligned_cols=20 Identities=20% Similarity=0.034 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHhCCcE
Q psy8930 8 LSPKDAASHIIRAQRRGESQ 27 (65)
Q Consensus 8 l~pe~vA~~iv~ai~~~~~~ 27 (65)
=++++||+.|+--|..|+..
T Consensus 26 EDv~YVAEyIvlLisNg~s~ 45 (104)
T 2v75_A 26 EDIKYVAEYIVLLIVNGGTV 45 (104)
T ss_dssp SCHHHHHHHHHHHHHTTCCH
T ss_pred ccHHHHHHHhheeeeCCCCh
Confidence 47899999999988888653
No 89
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=21.28 E-value=78 Score=18.30 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHhC
Q psy8930 7 LLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~ 24 (65)
..+||++|+.++..+...
T Consensus 221 ~~~~~dvA~~v~~l~s~~ 238 (267)
T 2gdz_A 221 ILDPPLIANGLITLIEDD 238 (267)
T ss_dssp CBCHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHhcCc
Confidence 569999999999888653
No 90
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics, seattle structural GE center for infectious disease, hydrolase; HET: 2FP; 2.35A {Bartonella henselae} SCOP: c.1.10.0
Probab=20.97 E-value=68 Score=20.71 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHHhC
Q psy8930 7 LLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~ 24 (65)
-.+||+||...++++++.
T Consensus 239 k~s~eevA~~Tv~~L~rt 256 (347)
T 3mmt_A 239 IASVEEVAEKTVHVLKQT 256 (347)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhh
Confidence 468999999999999874
No 91
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=20.77 E-value=68 Score=15.41 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=12.5
Q ss_pred HHHHHhhCcHHHHHHHH
Q psy8930 37 VNNFCRLMPLKVARILK 53 (65)
Q Consensus 37 ~~~l~~llP~~~~~~~~ 53 (65)
=.++++++|..+...+.
T Consensus 48 d~LL~~mLP~~VA~~Lk 64 (66)
T 3hls_A 48 DTLLYSVLPPSVANELR 64 (66)
T ss_dssp HHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHh
Confidence 35678899998877654
No 92
>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, STRU genomics; HET: CIT; 2.10A {Babesia bovis}
Probab=20.73 E-value=70 Score=20.89 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q psy8930 7 LLSPKDAASHIIRAQRRGE 25 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~ 25 (65)
-.+||+||...++++++.-
T Consensus 262 k~s~eeVA~aTv~~L~rtV 280 (379)
T 3kx6_A 262 KPAPQTVGFLTSRALRRTV 280 (379)
T ss_dssp CCCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhcC
Confidence 4689999999999998763
No 93
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=20.72 E-value=72 Score=18.43 Aligned_cols=23 Identities=9% Similarity=-0.187 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEe
Q psy8930 7 LLSPKDAASHIIRAQRRGESQVA 29 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~~v~ 29 (65)
.+..+|+|+.++.++.++...++
T Consensus 188 ~i~v~Dva~~~~~~~~~~~~~~~ 210 (287)
T 3sc6_A 188 PTYVADLNVMINKLIHTSLYGTY 210 (287)
T ss_dssp CEEHHHHHHHHHHHHTSCCCEEE
T ss_pred ceEHHHHHHHHHHHHhCCCCCeE
Confidence 46799999999999998764443
No 94
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=20.61 E-value=82 Score=17.61 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy8930 7 LLSPKDAASHIIRAQRR 23 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~ 23 (65)
..+||++|+.++..+..
T Consensus 207 ~~~~~dva~~~~~l~~~ 223 (242)
T 1uay_A 207 LGRPEEYAALVLHILEN 223 (242)
T ss_dssp CCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 46999999999988875
No 95
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=20.56 E-value=54 Score=19.41 Aligned_cols=20 Identities=5% Similarity=-0.082 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q psy8930 7 LLSPKDAASHIIRAQRRGES 26 (65)
Q Consensus 7 ~l~pe~vA~~iv~ai~~~~~ 26 (65)
.+.++|+|+.++.++.++..
T Consensus 221 ~~~v~Dva~a~~~~~~~~~~ 240 (345)
T 2z1m_A 221 WGYAPEYVEAMWLMMQQPEP 240 (345)
T ss_dssp CEEHHHHHHHHHHHHTSSSC
T ss_pred eEEHHHHHHHHHHHHhCCCC
Confidence 57899999999999987543
No 96
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=20.23 E-value=70 Score=17.99 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHHHHHHhC
Q psy8930 6 GLLSPKDAASHIIRAQRRG 24 (65)
Q Consensus 6 p~l~pe~vA~~iv~ai~~~ 24 (65)
...+++++|+.++..+..+
T Consensus 213 ~~~~~~dva~~~~~l~~~~ 231 (255)
T 2dkn_A 213 RGSEPREVAEAIAFLLGPQ 231 (255)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCCCHHHHHHHHHHHhCCC
Confidence 3589999999999998754
No 97
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=20.11 E-value=62 Score=13.24 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHHhC
Q psy8930 9 SPKDAASHIIRAQRRG 24 (65)
Q Consensus 9 ~pe~vA~~iv~ai~~~ 24 (65)
.+|.-|+.|.+++.++
T Consensus 18 aaeayakriaeamakg 33 (33)
T 2i9n_A 18 AAEAYAKRIAEAMAKG 33 (33)
T ss_dssp STHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3566788888877653
Done!