RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8930
         (65 letters)



>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
           dehydrogenase, HUM structural genomics, structural
           genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
           SCOP: c.2.1.2
          Length = 272

 Score = 42.2 bits (100), Expect = 1e-06
 Identities = 7/44 (15%), Positives = 20/44 (45%)

Query: 2   PSLLGLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMP 45
            SL   L P++  + ++      +  + +P+ +  +    R++P
Sbjct: 226 TSLGPTLEPEEVVNRLMHGILTEQKMIFIPSSIAFLTTLERILP 269


>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
           SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
           sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
           3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
           3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
           3ch6_A* 2irw_A* 2ilt_A* ...
          Length = 286

 Score = 26.1 bits (58), Expect = 0.74
 Identities = 5/46 (10%), Positives = 13/46 (28%)

Query: 8   LSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILK 53
              ++ A  II+     + +V   + L             +  +  
Sbjct: 230 APKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPSRKILEFLYS 275


>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
           oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
           spinosa}
          Length = 795

 Score = 25.1 bits (55), Expect = 1.8
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 4   LLGLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARIL 52
           L+ +  P      +      GE Q+A+  G  H     RL  L    +L
Sbjct: 158 LVDVPEPAQLLPALPGVLACGEPQLALRRGGAHAP---RLAGLGSDDVL 203


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.141    0.410 

Gapped
Lambda     K      H
   0.267   0.0814    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 954,218
Number of extensions: 42851
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 5
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.3 bits)