RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8930
         (65 letters)



>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 269

 Score = 26.3 bits (57), Expect = 0.27
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 8   LSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDFL 56
              ++ A  II+     + +V   + L     +  L+    +R + +FL
Sbjct: 216 APKEECALEIIKGGALRQEEVYYDSSL-----WTTLLIRNPSRKILEFL 259


>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus
          [TaxId: 274]}
          Length = 136

 Score = 25.7 bits (56), Expect = 0.34
 Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 9/43 (20%)

Query: 12 DAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKD 54
          D  + I  A R  +    VP                + RIL  
Sbjct: 6  DMLTRIRNATRVYKESTDVPASRFKEE---------ILRILAR 39


>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter
           autotrophicus [TaxId: 280]}
          Length = 310

 Score = 24.5 bits (51), Expect = 1.1
 Identities = 4/51 (7%), Positives = 11/51 (21%), Gaps = 7/51 (13%)

Query: 10  PKDAASHIIRAQRRGESQVAVPNG--LLHVNNFCRLMPLKVARILKDFLDS 58
             D    +          + + +    +                LK F ++
Sbjct: 264 GPDVMYPMKALINGCPEPLEIADAGHFVQEFG-----EQVAREALKHFAET 309


>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 361

 Score = 24.1 bits (51), Expect = 1.5
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 5/41 (12%)

Query: 21 QRRGESQVAVPNGLLHVNNFCRLMPLKVARILKDFLDSGVD 61
          ++RG  +         V +     P  V ++ ++FL +G +
Sbjct: 24 EKRGYVKAGPWTPEAAVEH-----PEAVRQLHREFLRAGSN 59


>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 244

 Score = 23.0 bits (49), Expect = 3.1
 Identities = 6/42 (14%), Positives = 19/42 (45%)

Query: 3   SLLGLLSPKDAASHIIRAQRRGESQVAVPNGLLHVNNFCRLM 44
           SL   L P++  + ++      +  + +P+ +  +    R++
Sbjct: 203 SLGPTLEPEEVVNRLMHGILTEQKMIFIPSSIAFLTTLERIL 244


>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia
          coli [TaxId: 562]}
          Length = 126

 Score = 22.2 bits (47), Expect = 6.8
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 9/43 (20%)

Query: 12 DAASHIIRAQRRGESQVAVPNGLLHVNNFCRLMPLKVARILKD 54
          D  + I   Q   ++ V +P+  L V          +A +LK+
Sbjct: 6  DMLTRIRNGQAANKAAVTMPSSKLKVA---------IANVLKE 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.410 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 224,462
Number of extensions: 7653
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 6
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.2 bits)