BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8931
         (95 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HA5|A Chain A, Structural Features Of A Zinc-Binding Site In The
          Superantigen Streptococcal Pyrogenic Exotoxin A
          (Spea1): Implications For Mhc Class Ii Recognition.
 pdb|1HA5|B Chain B, Structural Features Of A Zinc-Binding Site In The
          Superantigen Streptococcal Pyrogenic Exotoxin A
          (Spea1): Implications For Mhc Class Ii Recognition.
 pdb|1HA5|C Chain C, Structural Features Of A Zinc-Binding Site In The
          Superantigen Streptococcal Pyrogenic Exotoxin A
          (Spea1): Implications For Mhc Class Ii Recognition.
 pdb|1HA5|D Chain D, Structural Features Of A Zinc-Binding Site In The
          Superantigen Streptococcal Pyrogenic Exotoxin A
          (Spea1): Implications For Mhc Class Ii Recognition
          Length = 218

 Score = 25.8 bits (55), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 25 NLDVYGIDLKEFCKLCQHG 43
          N+D+YG++    C LC++ 
Sbjct: 73 NVDIYGVEYYHLCYLCENA 91


>pdb|1B1Z|A Chain A, Streptococcal Pyrogenic Exotoxin A1
 pdb|1B1Z|B Chain B, Streptococcal Pyrogenic Exotoxin A1
 pdb|1B1Z|C Chain C, Streptococcal Pyrogenic Exotoxin A1
 pdb|1B1Z|D Chain D, Streptococcal Pyrogenic Exotoxin A1
          Length = 219

 Score = 25.8 bits (55), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 25 NLDVYGIDLKEFCKLCQHG 43
          N+D+YG++    C LC++ 
Sbjct: 73 NVDIYGVEYYHLCYLCENA 91


>pdb|1UUP|A Chain A, Crystal Structure Of A Dimeric Form Of Streptococcal
          Pyrogenic Exotoxin A (spea1).
 pdb|1UUP|B Chain B, Crystal Structure Of A Dimeric Form Of Streptococcal
          Pyrogenic Exotoxin A (spea1).
 pdb|1UUP|C Chain C, Crystal Structure Of A Dimeric Form Of Streptococcal
          Pyrogenic Exotoxin A (spea1).
 pdb|1UUP|D Chain D, Crystal Structure Of A Dimeric Form Of Streptococcal
          Pyrogenic Exotoxin A (spea1)
          Length = 221

 Score = 25.8 bits (55), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 25 NLDVYGIDLKEFCKLCQHG 43
          N+D+YG++    C LC++ 
Sbjct: 75 NVDIYGVEYYHLCYLCENA 93


>pdb|1FNU|A Chain A, Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNU|B Chain B, Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNU|C Chain C, Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNU|D Chain D, Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNV|A Chain A, Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNV|B Chain B, Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNV|C Chain C, Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNV|D Chain D, Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNW|A Chain A, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNW|B Chain B, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNW|C Chain C, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNW|D Chain D, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNW|E Chain E, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNW|F Chain F, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNW|G Chain G, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
 pdb|1FNW|H Chain H, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
          Length = 221

 Score = 25.8 bits (55), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 25 NLDVYGIDLKEFCKLCQHG 43
          N+D+YG++    C LC++ 
Sbjct: 75 NVDIYGVEYYHLCYLCENA 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,025,268
Number of Sequences: 62578
Number of extensions: 47232
Number of successful extensions: 213
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 4
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)