BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8931
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CL18|EIF2D_RABIT Eukaryotic translation initiation factor 2D OS=Oryctolagus
cuniculus GN=EIF2D PE=1 SV=1
Length = 566
Score = 79.0 bits (193), Expect = 7e-15, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINM---VNNAAQ 58
GK+ PID+ +A R+ NKKVT+V NL+ YG+D Q AST + ++ Q
Sbjct: 468 GKICPIDITLAQRASNKKVTVVRNLEAYGLDPGSVAATLQQRCQASTTVTPAPGAKDSLQ 527
Query: 59 VQVQGNQIVFVHNLLTEKFNIQKRFIRGLELAPKKKR 95
VQ+QGNQ+ + LL E++++ +++I+GLE APK +
Sbjct: 528 VQIQGNQVHHLGRLLLEEYHLPRKYIQGLEHAPKASK 564
>sp|Q58CR3|EIF2D_BOVIN Eukaryotic translation initiation factor 2D OS=Bos taurus GN=EIF2D
PE=2 SV=1
Length = 579
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 3/94 (3%)
Query: 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINM---VNNAAQ 58
G++ PID+ +A ++ NKKVT+V NL+ YG+D + Q AST + + ++ Q
Sbjct: 481 GRICPIDITLAQKASNKKVTVVRNLEAYGLDPRSVAATLQQRCQASTTVTSAPGLKDSVQ 540
Query: 59 VQVQGNQIVFVHNLLTEKFNIQKRFIRGLELAPK 92
VQ+QGNQI + LL E++ + ++ I+GLE APK
Sbjct: 541 VQIQGNQIHHLGRLLLEEYRLPRKHIQGLEKAPK 574
>sp|Q61211|EIF2D_MOUSE Eukaryotic translation initiation factor 2D OS=Mus musculus
GN=Eif2d PE=2 SV=3
Length = 570
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAA---Q 58
GKL PID+ +A ++ NKKVT+V NL+ YG+D + Q AST ++ A Q
Sbjct: 473 GKLCPIDITLALKTYNKKVTVVRNLETYGLDPCSVAAILQQRCQASTIVSPAPGAKDSLQ 532
Query: 59 VQVQGNQIVFVHNLLTEKFNIQKRFIRGLELAPK 92
VQVQGNQI + LL E++ + ++I+GLE APK
Sbjct: 533 VQVQGNQIHHLGQLLLEEYRLPGKYIQGLEKAPK 566
>sp|Q5RA63|EIF2D_PONAB Eukaryotic translation initiation factor 2D OS=Pongo abelii
GN=EIF2D PE=2 SV=1
Length = 584
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINM---VNNAAQ 58
G++ PID+ +A R+ NKKVT+V NL+ YG+D + Q AST +N ++ Q
Sbjct: 486 GRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSLQ 545
Query: 59 VQVQGNQIVFVHNLLTEKFNIQKRFIRGLE--LAPKKKR 95
VQ+QGNQ+ + LL E++ + ++ I+GLE L P KK+
Sbjct: 546 VQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK 584
>sp|P41214|EIF2D_HUMAN Eukaryotic translation initiation factor 2D OS=Homo sapiens
GN=EIF2D PE=1 SV=3
Length = 584
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINM---VNNAAQ 58
G++ PID+ +A R+ NKKVT+V NL+ YG+D + Q AST +N ++ Q
Sbjct: 486 GRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSLQ 545
Query: 59 VQVQGNQIVFVHNLLTEKFNIQKRFIRGLE--LAPKKKR 95
VQ+QGNQ+ + LL E++ + ++ I+GLE L P KK+
Sbjct: 546 VQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK 584
>sp|Q5PPG7|EIF2D_RAT Eukaryotic translation initiation factor 2D OS=Rattus norvegicus
GN=Eif2d PE=2 SV=1
Length = 570
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAA---Q 58
GKL PID+ + ++ NKKVT+V NL+ YG+D + Q AST ++ A Q
Sbjct: 473 GKLCPIDITLVLKTYNKKVTVVRNLETYGLDPCSVAAILQQRCQASTIVSPAPGAKDSLQ 532
Query: 59 VQVQGNQIVFVHNLLTEKFNIQKRFIRGLELAPK 92
VQVQGNQI + LL E++ + ++I+GLE APK
Sbjct: 533 VQVQGNQIHHLGQLLLEEYRLPGKYIQGLEKAPK 566
>sp|A3CX23|SUI1_METMJ Protein translation factor SUI1 homolog OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
GN=Memar_1997 PE=3 SV=1
Length = 101
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 7 IDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQI 66
I +++ R K+VT++ LD Y IDL++ K + +A C V +++ +++QGN
Sbjct: 28 ISVKINRRRYGKEVTVIEGLDPYDIDLEDLSKFLKAKLA---CGGTVKDSS-IELQGNHR 83
Query: 67 VFVHNLLTEK-FNIQ 80
V +LL +K +N++
Sbjct: 84 ERVKDLLAQKGYNME 98
>sp|A2SQ91|SUI1_METLZ Protein translation factor SUI1 homolog OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0321 PE=3 SV=1
Length = 101
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 7 IDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQI 66
I ++V+ R K+VT+V+ LD Y IDL++ K + +A C V + +++QGN
Sbjct: 28 ISVKVSKRRYGKEVTVVDGLDPYEIDLEDLSKFLKGRLA---CGGTVKENS-IELQGNHR 83
Query: 67 VFVHNLLTEK 76
V LLT +
Sbjct: 84 DRVKALLTSR 93
>sp|A0B635|SUI1_METTP Protein translation factor SUI1 homolog OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_0366 PE=3
SV=1
Length = 102
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 7 IDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQI 66
I +++ R K+VT++ +D + IDL++ C + +A C V + +++QGN I
Sbjct: 28 IVVKIHKRRYGKEVTVIQGIDPHEIDLQDLCTYLKSKLA---CGGTVKDGV-IELQGNHI 83
Query: 67 VFVHNLLTEK 76
+ +LL++K
Sbjct: 84 GRIKDLLSKK 93
>sp|O42929|DENR_SCHPO Translation machinery-associated protein 22 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=tma22 PE=3 SV=1
Length = 190
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 9 LQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCIN-MVNNAAQVQVQGNQIV 67
++ R+ K+VT V LD +GI+ K+ K+ + A + + ++ VQG+
Sbjct: 101 IKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDLNY 160
Query: 68 FVHNLLTEKF 77
+ + + EKF
Sbjct: 161 DIFDFILEKF 170
>sp|Q9NAH4|DENR_CAEEL Density-regulated protein homolog OS=Caenorhabditis elegans
GN=Y47D3A.21 PE=3 SV=1
Length = 192
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 7 IDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQI 66
+ LQ R G K VT++ L + IDLK KL A C + V A ++ +QG+
Sbjct: 110 VTLQREPR-GKKSVTVIKGLATFDIDLKVASKLFAQKFA---CGSSVTGADEIVIQGDVK 165
Query: 67 VFVHNLLTEKF 77
+ +L+ EK+
Sbjct: 166 DDLLDLIPEKW 176
>sp|A6SIZ0|DENR_BOTFB Translation machinery-associated protein 22 OS=Botryotinia
fuckeliana (strain B05.10) GN=tma22 PE=3 SV=1
Length = 197
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 7 IDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQ-VQVQGNQ 65
I ++ R+ K VT V L+ +G++LK+ K A + + V + Q + VQG+
Sbjct: 103 IRIKRVERNKRKYVTEVQGLEAFGLELKKVAKEFGSRFATGSSVTKVASGGQEITVQGDV 162
Query: 66 IVFVHNLLTEKF-NIQKRFIRGLELAPKKKR 95
V L + + NI K+ I E PKKK+
Sbjct: 163 SDDVREFLIKNYKNIPKKNIVLEE--PKKKK 191
>sp|A3CK30|NANE_STRSV Putative N-acetylmannosamine-6-phosphate 2-epimerase
OS=Streptococcus sanguinis (strain SK36) GN=nanE PE=3
SV=1
Length = 232
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 28 VYGIDLKEFCKLCQHG--VAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKRFIR 85
V G D++ +LCQ G V A I+ + A Q+ G + + V +T I +RF+
Sbjct: 170 VDGPDIELIRRLCQAGFDVIAEGKIHYPSQAKQIHDLGVRGIVVGGAITRPKEITERFVA 229
Query: 86 GL 87
GL
Sbjct: 230 GL 231
>sp|A2QHG9|DENR_ASPNC Translation machinery-associated protein 22 OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=tma22 PE=3 SV=1
Length = 197
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 14 RSGNKKVTLVNNLDVYGIDLKEFCK-LCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNL 72
R+ K VT++ LD+YG++ K+ K L + S+ ++ VQG+ V
Sbjct: 109 RNKRKHVTVITGLDIYGLENKKIAKDLGKKFATGSSMTRSAGGTEEITVQGDVSDDVKEW 168
Query: 73 LTEKF 77
L E +
Sbjct: 169 LLEVY 173
>sp|P79060|SUI1_SCHPO Protein translation factor sui1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sui1 PE=3 SV=3
Length = 109
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 4 LKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQV-QVQ 62
L I +++ R+G K +T V L D K + + A + I ++ +V Q+Q
Sbjct: 24 LNNIHIRIQQRNGRKTLTTVQGL-PREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQ 82
Query: 63 GNQIVFVHNLLTEKFNIQKRFIR 85
G+Q + V LT++ +QK+ I+
Sbjct: 83 GDQRIKVMEFLTQQLGLQKKNIK 105
>sp|P01546|M11P_SCVM1 M1-1 protoxin OS=Saccharomyces cerevisiae killer virus M1 PE=2 SV=1
Length = 316
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTE 75
GN T + + + +C+HG+ AS C M N A V GN L +E
Sbjct: 215 GNGTYTTFTTPHIPAVAKRYVYPMCEHGIKASYC--MALNDAMVSANGNLYGLAEKLFSE 272
>sp|Q9P3T4|DENR_NEUCR Translation machinery-associated protein 22 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=tma-22 PE=3 SV=1
Length = 187
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 RSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMV-NNAAQVQVQGNQIVFVHNL 72
R+ K VT V+ L+ +G++LK+ K A + + V + ++ VQG+ +
Sbjct: 101 RNKRKYVTSVSGLEAFGLELKKVAKDFGKKFATGSSVTKVPSGGEEIVVQGDVSGEIEEF 160
Query: 73 LTEKF 77
+ EK+
Sbjct: 161 ILEKY 165
>sp|Q2H5Z7|DENR_CHAGB Translation machinery-associated protein 22 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=TMA22 PE=3 SV=1
Length = 188
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 14 RSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMV-NNAAQVQVQGNQIVFVHNL 72
R+ K VT V L+ +G++LK+ K A + V + ++ VQG+ +
Sbjct: 103 RNKRKFVTSVTGLEAFGLELKKVAKDFGKKFATGASVTKVPSGGEEIVVQGDVSGEIEEF 162
Query: 73 LTEKFN 78
L EK+
Sbjct: 163 LLEKYK 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,225,472
Number of Sequences: 539616
Number of extensions: 982136
Number of successful extensions: 2857
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2843
Number of HSP's gapped (non-prelim): 22
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)