Query psy8931
Match_columns 95
No_of_seqs 109 out of 681
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 23:06:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01253 SUI1: Translation ini 100.0 3.7E-30 8.1E-35 163.5 9.3 81 2-82 2-83 (83)
2 TIGR01159 DRP1 density-regulat 99.9 6.4E-28 1.4E-32 171.7 9.3 86 2-87 86-173 (173)
3 COG0023 SUI1 Translation initi 99.9 8.4E-28 1.8E-32 158.9 8.3 78 4-86 26-103 (104)
4 KOG2522|consensus 99.9 3.8E-28 8.3E-33 192.2 6.3 94 2-95 464-559 (560)
5 cd00474 SUI1_eIF1 The SUI1/eIF 99.9 2.1E-27 4.6E-32 149.7 8.3 76 6-86 1-76 (77)
6 PRK00939 translation initiatio 99.9 1.6E-26 3.4E-31 151.9 8.2 77 4-85 23-99 (99)
7 TIGR01160 SUI1_MOF2 translatio 99.9 5E-25 1.1E-29 147.1 8.6 82 5-87 26-108 (110)
8 TIGR01158 SUI1_rel translation 99.9 1.8E-24 3.9E-29 142.5 8.9 77 4-85 23-100 (101)
9 KOG1770|consensus 99.9 2.4E-22 5.2E-27 132.7 8.6 85 2-87 25-110 (112)
10 KOG3239|consensus 99.9 2.1E-22 4.6E-27 143.2 8.1 91 3-93 99-191 (193)
11 PRK06824 translation initiatio 99.8 4.3E-21 9.4E-26 129.5 7.4 72 6-82 42-114 (118)
12 PRK07451 translation initiatio 99.8 5.3E-21 1.1E-25 128.6 7.3 73 5-82 38-111 (115)
13 PRK09019 translation initiatio 99.8 2.2E-20 4.8E-25 124.4 7.2 73 5-82 31-104 (108)
14 PF05046 Img2: Mitochondrial l 98.5 1.4E-06 2.9E-11 55.9 7.5 61 13-79 21-87 (87)
15 KOG4034|consensus 96.8 0.0031 6.7E-08 44.8 5.3 66 7-79 98-169 (169)
16 TIGR00311 aIF-2beta translatio 96.0 0.022 4.8E-07 39.2 5.3 62 4-74 25-90 (133)
17 PRK03988 translation initiatio 95.7 0.035 7.5E-07 38.4 5.3 62 4-74 30-95 (138)
18 smart00653 eIF2B_5 domain pres 95.1 0.075 1.6E-06 35.4 5.4 63 4-73 6-72 (110)
19 PF01873 eIF-5_eIF-2B: Domain 94.3 0.085 1.9E-06 35.9 4.1 61 4-71 19-83 (125)
20 PRK12336 translation initiatio 94.2 0.13 2.7E-06 37.5 5.1 62 4-74 26-91 (201)
21 PRK14451 acylphosphatase; Prov 93.2 0.69 1.5E-05 29.4 6.7 64 22-87 8-73 (89)
22 PRK14434 acylphosphatase; Prov 92.9 0.67 1.5E-05 29.7 6.4 65 22-87 7-75 (92)
23 PRK14449 acylphosphatase; Prov 92.7 1.1 2.3E-05 28.5 7.1 65 21-87 7-73 (90)
24 PRK14425 acylphosphatase; Prov 92.3 0.89 1.9E-05 29.2 6.4 64 21-87 10-76 (94)
25 PRK14436 acylphosphatase; Prov 91.5 1.7 3.6E-05 27.7 7.0 65 22-88 9-75 (91)
26 PRK14444 acylphosphatase; Prov 91.5 1.7 3.7E-05 27.7 7.0 65 21-87 8-74 (92)
27 PRK14437 acylphosphatase; Prov 91.3 1.5 3.2E-05 29.1 6.7 64 21-86 27-92 (109)
28 PRK14443 acylphosphatase; Prov 91.2 1.4 3.1E-05 28.3 6.4 63 22-86 9-74 (93)
29 PRK14420 acylphosphatase; Prov 91.0 1.8 3.9E-05 27.3 6.7 64 22-87 7-72 (91)
30 PRK14427 acylphosphatase; Prov 91.0 1.7 3.7E-05 27.9 6.6 64 22-87 11-76 (94)
31 PRK14452 acylphosphatase; Prov 91.0 2.1 4.5E-05 28.3 7.2 64 21-86 24-89 (107)
32 PRK14438 acylphosphatase; Prov 90.9 1.6 3.6E-05 27.7 6.5 65 21-87 7-73 (91)
33 PRK14450 acylphosphatase; Prov 90.8 2.3 5E-05 26.9 7.0 63 22-87 7-73 (91)
34 PRK14439 acylphosphatase; Prov 90.7 1.6 3.5E-05 31.1 6.8 67 20-88 78-147 (163)
35 PRK14445 acylphosphatase; Prov 90.6 1.9 4.1E-05 27.4 6.5 65 21-87 8-74 (91)
36 PRK14433 acylphosphatase; Prov 90.6 2 4.2E-05 27.2 6.5 52 22-75 6-58 (87)
37 PRK14422 acylphosphatase; Prov 90.5 2.6 5.5E-05 27.0 7.1 64 21-86 10-75 (93)
38 PRK14431 acylphosphatase; Prov 90.3 1.8 4E-05 27.5 6.3 63 22-87 7-72 (89)
39 PRK14429 acylphosphatase; Prov 90.3 2 4.3E-05 27.2 6.4 64 22-87 7-72 (90)
40 PRK14423 acylphosphatase; Prov 90.2 1.9 4.2E-05 27.4 6.4 64 22-87 10-75 (92)
41 PF00708 Acylphosphatase: Acyl 90.2 2.6 5.7E-05 26.3 6.9 65 21-87 8-74 (91)
42 PRK14447 acylphosphatase; Prov 90.2 2.5 5.5E-05 27.0 6.9 65 21-87 8-75 (95)
43 PRK14440 acylphosphatase; Prov 90.1 2.6 5.6E-05 26.8 6.8 53 21-75 7-60 (90)
44 PRK14446 acylphosphatase; Prov 90.0 1.7 3.7E-05 27.7 6.0 64 22-87 7-72 (88)
45 PRK14421 acylphosphatase; Prov 89.5 3 6.4E-05 27.2 6.9 63 22-86 9-73 (99)
46 PRK14428 acylphosphatase; Prov 89.4 3.2 7E-05 26.9 7.0 63 22-86 13-77 (97)
47 PRK14442 acylphosphatase; Prov 89.3 2.9 6.3E-05 26.6 6.7 52 22-75 9-61 (91)
48 PRK14426 acylphosphatase; Prov 88.6 3.7 8E-05 26.1 6.8 64 22-87 9-75 (92)
49 PRK14435 acylphosphatase; Prov 88.0 3.9 8.5E-05 25.9 6.6 52 22-75 7-59 (90)
50 PRK14448 acylphosphatase; Prov 87.9 5.1 0.00011 25.4 7.0 53 21-75 6-59 (90)
51 PRK14441 acylphosphatase; Prov 87.0 5.2 0.00011 25.5 6.8 64 22-87 10-75 (93)
52 PRK14432 acylphosphatase; Prov 86.4 5.6 0.00012 25.4 6.7 52 22-75 7-60 (93)
53 PRK14424 acylphosphatase; Prov 84.9 8.1 0.00018 24.8 7.0 54 20-75 10-64 (94)
54 PRK14430 acylphosphatase; Prov 83.3 9 0.0002 24.4 6.6 63 22-87 9-74 (92)
55 PF14527 LAGLIDADG_WhiA: WhiA 80.4 2.5 5.4E-05 27.0 3.1 47 39-86 4-53 (93)
56 COG1254 AcyP Acylphosphatases 73.2 22 0.00047 22.8 7.3 62 22-85 9-72 (92)
57 PF03958 Secretin_N: Bacterial 72.2 4.8 0.0001 24.0 2.7 52 29-81 7-80 (82)
58 TIGR03147 cyt_nit_nrfF cytochr 68.7 1.6 3.6E-05 29.8 0.0 45 34-78 35-88 (126)
59 PF11388 DotA: Phagosome traff 67.5 3.7 7.9E-05 27.1 1.5 24 22-45 3-26 (105)
60 PTZ00450 macrophage migration 66.7 6.5 0.00014 26.0 2.6 22 65-86 77-98 (113)
61 PF02594 DUF167: Uncharacteris 65.9 8.6 0.00019 23.8 2.9 27 62-88 38-64 (77)
62 PRK05412 putative nucleotide-b 63.8 16 0.00034 26.1 4.2 63 17-85 91-158 (161)
63 TIGR01286 nifK nitrogenase mol 59.6 12 0.00027 30.8 3.5 66 15-81 218-312 (515)
64 PRK05090 hypothetical protein; 58.3 13 0.00027 24.2 2.8 28 61-88 43-70 (95)
65 PF01187 MIF: Macrophage migra 57.3 10 0.00022 24.6 2.3 22 65-86 75-96 (114)
66 COG1872 Uncharacterized conser 57.2 16 0.00034 24.2 3.1 29 59-87 45-73 (102)
67 cd01967 Nitrogenase_MoFe_alpha 56.7 20 0.00043 27.8 4.1 67 16-83 159-236 (406)
68 COG4465 CodY Pleiotropic trans 56.4 21 0.00046 27.0 4.0 55 30-85 25-81 (261)
69 PRK10560 hofQ outer membrane p 56.1 49 0.0011 26.0 6.2 59 27-86 97-157 (386)
70 PF03918 CcmH: Cytochrome C bi 55.3 1.4 3.1E-05 30.6 -2.2 45 34-78 35-88 (148)
71 PHA00019 IV phage assembly pro 54.6 58 0.0013 25.9 6.5 58 28-86 138-201 (428)
72 PRK01310 hypothetical protein; 54.6 16 0.00034 24.1 2.8 28 61-88 49-76 (104)
73 PF06018 CodY: CodY GAF-like d 53.9 20 0.00044 25.7 3.5 57 29-86 19-77 (177)
74 TIGR00647 MG103 conserved hypo 53.8 19 0.0004 27.7 3.5 47 38-85 100-151 (279)
75 PRK00647 hypothetical protein; 53.5 16 0.00034 23.9 2.6 28 61-88 38-65 (96)
76 PTZ00397 macrophage migration 51.8 16 0.00036 23.5 2.6 21 66-86 78-98 (116)
77 PF04001 Vhr1: Transcription f 51.1 9.2 0.0002 24.9 1.2 26 62-87 48-73 (95)
78 PRK14476 nitrogenase molybdenu 50.2 25 0.00054 28.3 3.8 64 16-81 167-260 (455)
79 PRK01530 hypothetical protein; 49.8 19 0.00041 23.8 2.6 28 61-88 50-77 (105)
80 cd01974 Nitrogenase_MoFe_beta 47.1 28 0.00061 27.6 3.6 64 16-80 159-251 (435)
81 TIGR01285 nifN nitrogenase mol 45.8 36 0.00078 27.2 4.1 65 17-82 167-261 (432)
82 PRK04158 transcriptional repre 45.4 51 0.0011 25.2 4.6 56 29-85 21-78 (256)
83 PRK05177 minC septum formation 45.1 1.2E+02 0.0026 22.4 6.6 67 4-80 8-79 (239)
84 PRK13568 hofQ putative outer m 44.6 93 0.002 24.4 6.2 56 30-86 91-152 (381)
85 PF06857 ACP: Malonate decarbo 43.8 84 0.0018 20.0 4.9 41 49-90 19-68 (87)
86 cd01977 Nitrogenase_VFe_alpha 43.2 39 0.00084 26.6 3.9 65 16-82 161-237 (415)
87 PTZ00423 glideosome-associated 42.9 18 0.00038 26.0 1.7 21 28-48 148-169 (193)
88 PF05005 Ocnus: Janus/Ocnus fa 42.0 62 0.0013 21.4 4.2 62 2-63 13-82 (108)
89 PF00691 OmpA: OmpA family; I 40.2 35 0.00076 20.7 2.6 22 65-87 55-76 (97)
90 PF14492 EFG_II: Elongation Fa 39.9 24 0.00053 21.2 1.8 51 32-82 17-72 (75)
91 PRK14477 bifunctional nitrogen 39.6 32 0.0007 30.3 3.1 64 17-82 644-737 (917)
92 TIGR02433 lysidine_TilS_C tRNA 39.4 34 0.00073 18.4 2.2 25 57-82 10-35 (47)
93 cd02413 40S_S3_KH K homology R 39.0 94 0.002 19.2 6.1 25 62-86 48-72 (81)
94 cd02394 vigilin_like_KH K homo 37.3 78 0.0017 17.7 3.8 34 38-72 23-57 (62)
95 smart00649 RL11 Ribosomal prot 37.2 83 0.0018 21.4 4.3 53 26-82 20-80 (132)
96 KOG2872|consensus 36.4 75 0.0016 25.2 4.4 29 57-87 293-333 (359)
97 PRK14024 phosphoribosyl isomer 36.3 1.7E+02 0.0036 21.3 6.8 28 16-44 14-45 (241)
98 TIGR01862 N2-ase-Ialpha nitrog 36.2 59 0.0013 26.0 4.0 63 17-81 191-265 (443)
99 TIGR01608 citD citrate lyase a 36.0 90 0.002 20.3 4.1 42 49-90 20-69 (92)
100 COG1601 GCD7 Translation initi 35.9 58 0.0012 22.9 3.4 52 21-75 44-100 (151)
101 cd01966 Nitrogenase_NifN_1 Nit 35.6 39 0.00084 26.9 2.8 65 16-82 156-250 (417)
102 COG1481 Uncharacterized protei 35.2 63 0.0014 25.3 3.8 54 32-86 117-174 (308)
103 PF04461 DUF520: Protein of un 34.9 72 0.0016 22.7 3.8 63 17-85 91-158 (160)
104 cd01965 Nitrogenase_MoFe_beta_ 34.9 2.3E+02 0.0049 22.3 7.2 66 16-82 154-249 (428)
105 PRK00745 4-oxalocrotonate taut 34.8 38 0.00082 19.1 2.0 22 65-86 20-41 (62)
106 PF03946 Ribosomal_L11_N: Ribo 33.9 67 0.0014 18.9 3.0 36 26-65 21-58 (60)
107 TIGR02787 codY_Gpos GTP-sensin 32.1 1.1E+02 0.0024 23.3 4.6 57 28-85 17-75 (251)
108 cd00316 Oxidoreductase_nitroge 31.9 2.3E+02 0.005 21.6 6.7 67 15-82 150-228 (399)
109 TIGR01283 nifE nitrogenase mol 31.8 84 0.0018 25.1 4.2 64 17-81 197-271 (456)
110 KOG1546|consensus 31.7 41 0.00089 26.8 2.3 31 59-89 78-110 (362)
111 PF05304 DUF728: Protein of un 31.6 52 0.0011 21.6 2.4 26 57-82 7-39 (103)
112 PF13588 HSDR_N_2: Type I rest 31.3 22 0.00047 22.5 0.7 24 64-87 4-27 (112)
113 PF09581 Spore_III_AF: Stage I 30.9 35 0.00076 23.7 1.7 23 64-86 164-186 (188)
114 PRK10144 formate-dependent nit 30.7 40 0.00087 23.0 1.9 46 33-78 30-88 (126)
115 PRK15126 thiamin pyrimidine py 30.1 1.6E+02 0.0035 21.2 5.1 57 32-88 154-211 (272)
116 PRK13196 pyrrolidone-carboxyla 29.4 1.1E+02 0.0024 22.3 4.1 51 21-75 4-59 (211)
117 PF11858 DUF3378: Domain of un 29.2 74 0.0016 19.8 2.8 17 57-73 48-64 (81)
118 PF01361 Tautomerase: Tautomer 28.8 64 0.0014 18.0 2.3 21 66-86 20-40 (60)
119 PRK02289 4-oxalocrotonate taut 28.6 70 0.0015 18.2 2.5 21 66-86 21-41 (60)
120 PF14894 Lsm_C: Lsm C-terminal 28.2 64 0.0014 19.6 2.3 24 67-90 2-25 (64)
121 COG0855 Ppk Polyphosphate kina 28.2 1.6E+02 0.0035 25.6 5.4 52 33-88 244-295 (696)
122 PRK13197 pyrrolidone-carboxyla 28.2 1.1E+02 0.0024 22.3 3.9 51 21-75 4-59 (215)
123 PF08282 Hydrolase_3: haloacid 28.2 1.9E+02 0.0042 19.5 5.9 59 31-89 151-210 (254)
124 TIGR02802 Pal_lipo peptidoglyc 28.2 47 0.001 20.6 1.8 23 65-88 56-78 (104)
125 TIGR00007 phosphoribosylformim 27.8 2.2E+02 0.0048 20.1 7.5 40 16-55 9-52 (230)
126 PF13014 KH_3: KH domain 27.6 88 0.0019 16.4 2.6 27 37-63 13-43 (43)
127 cd01976 Nitrogenase_MoFe_alpha 27.3 1.1E+02 0.0024 24.2 4.2 65 17-82 172-247 (421)
128 PRK02220 4-oxalocrotonate taut 27.2 69 0.0015 17.9 2.3 20 67-86 22-41 (61)
129 PF12268 DUF3612: Protein of u 27.0 37 0.00081 24.3 1.3 45 10-55 81-131 (178)
130 PRK10976 putative hydrolase; P 26.7 2.4E+02 0.0052 20.1 5.7 57 33-89 157-214 (266)
131 TIGR01282 nifD nitrogenase mol 25.9 1.2E+02 0.0026 24.5 4.2 64 17-81 207-281 (466)
132 COG3088 CcmH Uncharacterized p 25.8 51 0.0011 23.3 1.7 45 34-78 35-92 (153)
133 TIGR02515 IV_pilus_PilQ type I 25.1 2.9E+02 0.0062 21.8 6.1 60 26-86 102-170 (418)
134 PF12221 HflK_N: Bacterial mem 24.9 54 0.0012 18.2 1.4 17 30-46 20-36 (42)
135 PF11019 DUF2608: Protein of u 24.8 61 0.0013 24.1 2.2 35 57-91 154-188 (252)
136 COG2024 Phenylalanyl-tRNA synt 24.8 87 0.0019 25.9 3.1 42 34-81 222-263 (536)
137 PRK00748 1-(5-phosphoribosyl)- 24.7 2.5E+02 0.0055 19.7 7.6 44 9-53 5-52 (233)
138 PF08601 PAP1: Transcription f 24.5 36 0.00077 26.9 0.9 23 26-48 307-330 (347)
139 PRK01964 4-oxalocrotonate taut 24.2 85 0.0018 17.9 2.3 20 67-86 22-41 (64)
140 KOG4233|consensus 24.2 32 0.00069 22.1 0.4 21 14-34 15-36 (90)
141 COG1039 RnhC Ribonuclease HIII 23.9 1.1E+02 0.0024 23.9 3.4 19 57-75 49-67 (297)
142 CHL00127 rpl11 ribosomal prote 23.2 85 0.0018 21.6 2.4 53 26-82 28-88 (140)
143 cd00491 4Oxalocrotonate_Tautom 23.1 1.1E+02 0.0024 16.7 2.6 21 66-86 20-40 (58)
144 PRK10513 sugar phosphate phosp 23.0 2.8E+02 0.0061 19.7 5.3 56 33-88 163-219 (270)
145 PF00013 KH_1: KH domain syndr 22.9 1.5E+02 0.0032 16.4 3.2 36 36-72 21-56 (60)
146 PF03477 ATP-cone: ATP cone do 22.7 94 0.002 18.7 2.4 27 9-45 1-27 (90)
147 TIGR02517 type_II_gspD general 22.6 3.8E+02 0.0083 22.0 6.6 54 27-81 103-158 (594)
148 PF00148 Oxidored_nitro: Nitro 22.5 1.7E+02 0.0036 22.5 4.2 66 16-82 143-220 (398)
149 PF02698 DUF218: DUF218 domain 22.4 1.2E+02 0.0026 19.9 3.0 26 64-90 54-79 (155)
150 cd00349 Ribosomal_L11 Ribosoma 22.1 2.2E+02 0.0047 19.3 4.3 52 26-81 20-79 (131)
151 PF08869 XisI: XisI protein; 21.6 71 0.0015 21.3 1.8 29 57-86 66-95 (111)
152 COG0413 PanB Ketopantoate hydr 21.6 2.6E+02 0.0057 21.5 5.0 60 14-81 71-133 (268)
153 PRK14478 nitrogenase molybdenu 21.6 1.2E+02 0.0026 24.5 3.4 64 17-81 191-265 (475)
154 cd01981 Pchlide_reductase_B Pc 21.5 1.3E+02 0.0028 23.7 3.5 66 16-81 161-240 (430)
155 COG0106 HisA Phosphoribosylfor 21.3 3.7E+02 0.008 20.3 7.0 41 16-56 12-56 (241)
156 PF11287 DUF3088: Protein of u 21.1 84 0.0018 21.1 2.0 17 65-81 95-111 (112)
157 PF02861 Clp_N: Clp amino term 21.0 39 0.00084 18.1 0.3 18 26-43 34-51 (53)
158 PF14804 Jag_N: Jag N-terminus 20.9 1.4E+02 0.003 17.0 2.7 29 61-90 2-33 (52)
159 PF09840 DUF2067: Uncharacteri 20.6 2.5E+02 0.0053 20.3 4.5 42 30-72 8-50 (190)
160 PF04954 SIP: Siderophore-inte 20.5 98 0.0021 20.0 2.3 49 32-87 63-113 (119)
161 PF11608 Limkain-b1: Limkain b 20.4 2.5E+02 0.0055 18.1 4.8 36 20-56 4-40 (90)
162 TIGR01284 alt_nitrog_alph nitr 20.1 4.7E+02 0.01 21.0 6.7 65 16-82 198-274 (457)
163 PRK05863 sulfur carrier protei 20.0 1.3E+02 0.0028 17.4 2.5 18 68-86 17-34 (65)
No 1
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=99.97 E-value=3.7e-30 Score=163.46 Aligned_cols=81 Identities=32% Similarity=0.479 Sum_probs=70.3
Q ss_pred CCCccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhhhcCCC
Q psy8931 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTEKFNIQ 80 (95)
Q Consensus 2 G~~~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~~~gip 80 (95)
|+.++|+|++++|+|||+||+|+||+.|++|+++||++|+++||||+||.+.++. .+|+|||||+++|.+||.++|++|
T Consensus 2 ~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~~~~ 81 (83)
T PF01253_consen 2 KEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKGGIP 81 (83)
T ss_dssp S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHCSSE
T ss_pred CCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhCCCC
Confidence 6789999999999999999999999999999999999999999999999988763 899999999999999999989888
Q ss_pred cC
Q psy8931 81 KR 82 (95)
Q Consensus 81 ~~ 82 (95)
++
T Consensus 82 k~ 83 (83)
T PF01253_consen 82 KK 83 (83)
T ss_dssp -S
T ss_pred CC
Confidence 64
No 2
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=99.95 E-value=6.4e-28 Score=171.73 Aligned_cols=86 Identities=20% Similarity=0.358 Sum_probs=80.6
Q ss_pred CCCccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhhhc-CC
Q psy8931 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTEKF-NI 79 (95)
Q Consensus 2 G~~~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~~~-gi 79 (95)
|.+++|+|++++|++||+||+|+||+.|++|++++|+.|+++||||+||.+.++. ++|+|||||++.|.+||.+.| +|
T Consensus 86 ~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~~~v 165 (173)
T TIGR01159 86 KLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPEV 165 (173)
T ss_pred CCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999999999999999999999999999987655 999999999999999999977 89
Q ss_pred CcCceEEc
Q psy8931 80 QKRFIRGL 87 (95)
Q Consensus 80 p~~~I~~~ 87 (95)
|.+.|+.+
T Consensus 166 ~e~~I~~~ 173 (173)
T TIGR01159 166 GDKDIKDL 173 (173)
T ss_pred CHHHeeeC
Confidence 99998863
No 3
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=8.4e-28 Score=158.88 Aligned_cols=78 Identities=24% Similarity=0.331 Sum_probs=75.5
Q ss_pred CccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCcCc
Q psy8931 4 LKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKRF 83 (95)
Q Consensus 4 ~~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~~~ 83 (95)
.+.|+|++++|+++|.||+|+||+.|++|+++||++|+++|||||||.+ ++|+|||||++.|.+||.+ .|+|.++
T Consensus 26 ~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~----~~IeiQGdhr~~v~~~L~~-~G~k~k~ 100 (104)
T COG0023 26 DQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKD----GEIEIQGDHRDKVKELLIK-KGFKVKN 100 (104)
T ss_pred CCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCceecC----CEEEEeChHHHHHHHHHHH-cCCchhh
Confidence 5789999999999999999999999999999999999999999999999 8999999999999999999 9999999
Q ss_pred eEE
Q psy8931 84 IRG 86 (95)
Q Consensus 84 I~~ 86 (95)
|.+
T Consensus 101 i~~ 103 (104)
T COG0023 101 IGI 103 (104)
T ss_pred ccc
Confidence 875
No 4
>KOG2522|consensus
Probab=99.95 E-value=3.8e-28 Score=192.17 Aligned_cols=94 Identities=46% Similarity=0.637 Sum_probs=91.9
Q ss_pred CCCccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC--cEEEEcCChHHHHHHHHhhhcCC
Q psy8931 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA--AQVQVQGNQIVFVHNLLTEKFNI 79 (95)
Q Consensus 2 G~~~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~--~eI~iQGd~~~~v~~~L~~~~gi 79 (95)
|.+|+|.|.+++|.|||.||.|+|||.|++|++.+|.+||+.|+||+||.+.||. .||+|||||.+.|+++|.+.|||
T Consensus 464 gs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~ygi 543 (560)
T KOG2522|consen 464 GSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKSYGI 543 (560)
T ss_pred CCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHhhCC
Confidence 7899999999999999999999999999999999999999999999999999996 89999999999999999999999
Q ss_pred CcCceEEccccCCCCC
Q psy8931 80 QKRFIRGLELAPKKKR 95 (95)
Q Consensus 80 p~~~I~~~~~~~k~k~ 95 (95)
|++||+++|+++||||
T Consensus 544 pkK~I~gleka~Kkkk 559 (560)
T KOG2522|consen 544 PKKWIDGLEKAKKKKK 559 (560)
T ss_pred CHHHHhHHHHhhcccC
Confidence 9999999999999886
No 5
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=99.95 E-value=2.1e-27 Score=149.73 Aligned_cols=76 Identities=25% Similarity=0.362 Sum_probs=72.7
Q ss_pred cEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCcCceE
Q psy8931 6 PIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKRFIR 85 (95)
Q Consensus 6 ~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~~~I~ 85 (95)
.|+|++++|++||.||+|+||+.|.+|++++|+.|+++|||||||.+ .+|+|||||++.|.+||.+ .|+++++|.
T Consensus 1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~----~~I~lQGD~r~~v~~~L~~-~g~~~~~i~ 75 (77)
T cd00474 1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKD----EVIELQGDQRKKIKEFLIK-MGFAKDNIK 75 (77)
T ss_pred CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEec----CEEEEeCcHHHHHHHHHHH-cCCCHHHeE
Confidence 38999999999999999999999999999999999999999999998 8999999999999999999 799998887
Q ss_pred E
Q psy8931 86 G 86 (95)
Q Consensus 86 ~ 86 (95)
+
T Consensus 76 i 76 (77)
T cd00474 76 I 76 (77)
T ss_pred e
Confidence 5
No 6
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=99.94 E-value=1.6e-26 Score=151.88 Aligned_cols=77 Identities=26% Similarity=0.402 Sum_probs=73.6
Q ss_pred CccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCcCc
Q psy8931 4 LKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKRF 83 (95)
Q Consensus 4 ~~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~~~ 83 (95)
..+|+|++++|++||.||+|+||+.|++|+++||+.|+++|||||||.+ ++|+|||||+++|.+||.+ +|||.++
T Consensus 23 ~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~----~~I~iQGD~r~~v~~~L~~-~G~~~~~ 97 (99)
T PRK00939 23 QQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKD----GRIELQGDHRERVKELLIK-MGFSEEN 97 (99)
T ss_pred CceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEEC----CEEEEeCcHHHHHHHHHHH-cCCChhh
Confidence 3689999999999999999999999999999999999999999999987 7899999999999999998 9999998
Q ss_pred eE
Q psy8931 84 IR 85 (95)
Q Consensus 84 I~ 85 (95)
|+
T Consensus 98 i~ 99 (99)
T PRK00939 98 IE 99 (99)
T ss_pred cC
Confidence 85
No 7
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=99.92 E-value=5e-25 Score=147.11 Aligned_cols=82 Identities=24% Similarity=0.268 Sum_probs=74.4
Q ss_pred ccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhhhcCCCcCc
Q psy8931 5 KPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTEKFNIQKRF 83 (95)
Q Consensus 5 ~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~~~gip~~~ 83 (95)
..|+|++++|+|||.||+|+||+. .+|++++||.|+++|||||||.+.++. .+|+|||||+++|.+||.++.-++++.
T Consensus 26 ~~I~Iri~qR~grK~VTiI~Gl~~-~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~re~v~~~L~~~g~~~~~~ 104 (110)
T TIGR01160 26 NYIHIRIQQRNGRKTLTTVQGLPK-EYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQGLLKKDQ 104 (110)
T ss_pred ceEEEEEEEccCCccEEEEeccCC-hHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcHHHHHHHHHHHcCCCCHHH
Confidence 469999999999999999999994 999999999999999999999987765 899999999999999999954478888
Q ss_pred eEEc
Q psy8931 84 IRGL 87 (95)
Q Consensus 84 I~~~ 87 (95)
|.+.
T Consensus 105 i~vh 108 (110)
T TIGR01160 105 IKIH 108 (110)
T ss_pred eeec
Confidence 8763
No 8
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=99.91 E-value=1.8e-24 Score=142.47 Aligned_cols=77 Identities=26% Similarity=0.374 Sum_probs=72.6
Q ss_pred CccEEEEEeee-cCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCcC
Q psy8931 4 LKPIDLQVATR-SGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 4 ~~~I~I~~~~R-~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~~ 82 (95)
.+.|+|++++| +++|.||+|+||+.|.+|++++|+.|+++||||+|+.+ ++|+|||||++.|.+||.+ .|+|.+
T Consensus 23 ~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~----~~IeiQGD~~~~v~~~L~~-~G~~~k 97 (101)
T TIGR01158 23 DQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKD----GVIEIQGDHRDRVKDLLEK-KGFKVK 97 (101)
T ss_pred CceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeC----CEEEEeCcHHHHHHHHHHH-cCCCee
Confidence 46799999999 89999999999999999999999999999999999997 8999999999999999999 899998
Q ss_pred ceE
Q psy8931 83 FIR 85 (95)
Q Consensus 83 ~I~ 85 (95)
++.
T Consensus 98 ~~~ 100 (101)
T TIGR01158 98 LIG 100 (101)
T ss_pred ecC
Confidence 763
No 9
>KOG1770|consensus
Probab=99.88 E-value=2.4e-22 Score=132.69 Aligned_cols=85 Identities=25% Similarity=0.273 Sum_probs=77.9
Q ss_pred CCCccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhhhcCCC
Q psy8931 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTEKFNIQ 80 (95)
Q Consensus 2 G~~~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~~~gip 80 (95)
|....|||++++|+|||++|+|+|+.. .+|++.+.+.|++.|||+|+|.++|+. ..|++|||++..|.+||...-.+.
T Consensus 25 g~~~~ihIRIQQRnGrKtlTtVQgi~~-Eyd~kril~~lKKef~CnGtvved~e~gevIQLqGDqR~nv~~fl~~~g~~k 103 (112)
T KOG1770|consen 25 GTEKYIHIRIQQRNGRKTLTTVQGIPM-EYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQGDQRKNVCQFLVQVGLVK 103 (112)
T ss_pred CccceEEEEEEeeCCceEEEEecCChh-hhhHHHHHHHHHHhccCCCeEecCcccCceEEeccchhhhHHHHHHHhcccc
Confidence 566789999999999999999999986 779999999999999999999999987 899999999999999999977788
Q ss_pred cCceEEc
Q psy8931 81 KRFIRGL 87 (95)
Q Consensus 81 ~~~I~~~ 87 (95)
+..|++.
T Consensus 104 ~~~ikih 110 (112)
T KOG1770|consen 104 KDNIKIH 110 (112)
T ss_pred ccceeec
Confidence 8877763
No 10
>KOG3239|consensus
Probab=99.87 E-value=2.1e-22 Score=143.22 Aligned_cols=91 Identities=20% Similarity=0.295 Sum_probs=80.4
Q ss_pred CCccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCC
Q psy8931 3 KLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQ 80 (95)
Q Consensus 3 ~~~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip 80 (95)
-+++|.|..+-|+.||.||+|+||+.|+|||+.+|+.|.++||||+||...+.. +||.||||..+.|.+|+.+ |..+|
T Consensus 99 ~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~dDi~d~I~ekw~ev~ 178 (193)
T KOG3239|consen 99 LPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVKDDIFDFIPEKWPEVP 178 (193)
T ss_pred CCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEEeccchHHHHHHHHHhcccCC
Confidence 367899999999999999999999999999999999999999999999987765 9999999999999999988 77899
Q ss_pred cCceEEccccCCC
Q psy8931 81 KRFIRGLELAPKK 93 (95)
Q Consensus 81 ~~~I~~~~~~~k~ 93 (95)
.+...+.|...++
T Consensus 179 ed~~~IED~~~kK 191 (193)
T KOG3239|consen 179 EDDVKIEDLGDKK 191 (193)
T ss_pred cccceeecchhhh
Confidence 9964444444333
No 11
>PRK06824 translation initiation factor Sui1; Validated
Probab=99.84 E-value=4.3e-21 Score=129.49 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=66.7
Q ss_pred cEEEEEeee-cCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCcC
Q psy8931 6 PIDLQVATR-SGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 6 ~I~I~~~~R-~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~~ 82 (95)
.|+|+.+++ +++|.||+|+||+....|+++||+.|+++|+||+||.+ ++|+|||||++.|.+||.+ .|++.+
T Consensus 42 ~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd----~~IeiQGD~r~~v~~~L~~-~G~~~k 114 (118)
T PRK06824 42 IVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKD----GVIEIQGDHVELLLAELLK-RGFKAK 114 (118)
T ss_pred eEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEec----CEEEEcCcHHHHHHHHHHH-CCCeEe
Confidence 788977754 68999999999999999999999999999999999998 8999999999999999999 788765
No 12
>PRK07451 translation initiation factor Sui1; Validated
Probab=99.84 E-value=5.3e-21 Score=128.56 Aligned_cols=73 Identities=12% Similarity=0.233 Sum_probs=63.4
Q ss_pred ccEEEEEee-ecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCcC
Q psy8931 5 KPIDLQVAT-RSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 5 ~~I~I~~~~-R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~~ 82 (95)
+.|.|++++ ++++|.||+|+||+.+..|+++||+.|+++||||+|+.+ ++|+|||||+++|.+||.+ .|++.+
T Consensus 38 ~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd----~~IelQGD~r~~v~~~L~~-~Gf~~k 111 (115)
T PRK07451 38 QNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKD----NTIEIQGDHRQKILEILIK-LGYKAK 111 (115)
T ss_pred eeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcC----CEEEEcCcHHHHHHHHHHH-CCCeEe
Confidence 345555432 335699999999999899999999999999999999998 8999999999999999999 788755
No 13
>PRK09019 translation initiation factor Sui1; Validated
Probab=99.82 E-value=2.2e-20 Score=124.36 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=63.7
Q ss_pred ccEEEEEee-ecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCcC
Q psy8931 5 KPIDLQVAT-RSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 5 ~~I~I~~~~-R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~~ 82 (95)
..|.|+.++ ++++|.||+|+||+....|+++||+.|+++||||+||.+ ++|+|||||++.|.+||.+ .|+..+
T Consensus 31 ~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~----~~IelQGD~r~~v~~~L~~-~Gf~~k 104 (108)
T PRK09019 31 GIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKD----GVIEIQGDKRDLLKSLLEA-KGMKVK 104 (108)
T ss_pred ceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEc----CEEEEcCcHHHHHHHHHHH-CCCeEE
Confidence 356666553 235689999999998899999999999999999999998 8999999999999999999 788655
No 14
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=98.45 E-value=1.4e-06 Score=55.88 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=50.2
Q ss_pred eecCCeeEEEEecccCCCCCHHHHHHHHhhhcccc------eEEeeCCCCcEEEEcCChHHHHHHHHhhhcCC
Q psy8931 13 TRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAAS------TCINMVNNAAQVQVQGNQIVFVHNLLTEKFNI 79 (95)
Q Consensus 13 ~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs------~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gi 79 (95)
+++|++.+|.|+.++. |+..|.++|+..|.-. +.|.+.. +.|.|+||+..+|.+||.+ .||
T Consensus 21 k~~g~~~~T~IrkI~G---D~~aL~~dL~~~l~~~~~~~~~~~V~~~~--g~i~IkG~~~~~Vk~wL~~-~GF 87 (87)
T PF05046_consen 21 KNGGNRKITVIRKIEG---DIWALKKDLRKFLGEKPKKKIDVRVNELT--GHIEIKGDHVEEVKKWLLE-KGF 87 (87)
T ss_pred eCCCcEeEEEEEeecC---CHHHHHHHHHHHhhhhcCCCcceEEeecC--CEEEEcCccHHHHHHHHHH-CcC
Confidence 3458999999999997 9999999999999633 3455432 6999999999999999998 664
No 15
>KOG4034|consensus
Probab=96.84 E-value=0.0031 Score=44.83 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=44.6
Q ss_pred EEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccc------eEEeeCCCCcEEEEcCChHHHHHHHHhhhcCC
Q psy8931 7 IDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAAS------TCINMVNNAAQVQVQGNQIVFVHNLLTEKFNI 79 (95)
Q Consensus 7 I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs------~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gi 79 (95)
|-....+| |+|-+|+|+.+|. |.-.|-+.|+..+.=+ +-|.+.. +.|.+-|||.+.|.+||.+ .||
T Consensus 98 VYl~~k~~-G~k~lT~IRkVeG---Di~aLe~DL~s~L~~~~~~s~~t~Vnels--gqI~~~g~~v~~vr~~L~e-KGF 169 (169)
T KOG4034|consen 98 VYLDYKQR-GNKILTVIRKVEG---DIWALENDLRSTLEMSPKKSYATHVNELS--GQIVLKGNHVDTVREWLQE-KGF 169 (169)
T ss_pred eEEeeecC-CcEEEEEEEeecc---cHHHHHHHHHHHHhhccCCChhhhhhhhc--ceEEEeCChHHHHHHHHHH-ccC
Confidence 33333333 9999999999997 5555555555443222 2233322 6999999999999999998 554
No 16
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=95.95 E-value=0.022 Score=39.17 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=46.7
Q ss_pred CccEEEEEeeecCCeeEEEEecccCC----CCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHh
Q psy8931 4 LKPIDLQVATRSGNKKVTLVNNLDVY----GIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLT 74 (95)
Q Consensus 4 ~~~I~I~~~~R~g~K~vT~V~Gle~f----~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~ 74 (95)
.|+.++.++ |+| |++.||.+. .=+++-+.+.|...+++.+++.. +...|+|.+.....+-+.
T Consensus 25 mP~~~v~~e---G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i~~----~rlii~G~~~~~~i~~~L 90 (133)
T TIGR00311 25 VPKAYIVIE---GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNLEG----GRLILQGKFTHFLLNERI 90 (133)
T ss_pred CCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCceecC----CEEEEEeecCHHHHHHHH
Confidence 455555555 445 999998654 45789999999999999999964 799999997765544333
No 17
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=95.67 E-value=0.035 Score=38.43 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=46.2
Q ss_pred CccEEEEEeeecCCeeEEEEecccCC----CCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHh
Q psy8931 4 LKPIDLQVATRSGNKKVTLVNNLDVY----GIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLT 74 (95)
Q Consensus 4 ~~~I~I~~~~R~g~K~vT~V~Gle~f----~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~ 74 (95)
.|+.++.++ |+| |++.||.+. .=|++-+.+.|...+++.+++.. +...|+|.+.....+-+.
T Consensus 30 ~p~~~v~~e---G~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i~~----~~lii~G~~~~~~i~~~L 95 (138)
T PRK03988 30 VPKPDVRIE---GNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNIEG----GRLILQGKFSPRVINEKI 95 (138)
T ss_pred CCCCeEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceeecC----CEEEEEEeeCHHHHHHHH
Confidence 355555544 445 899998654 45789999999999999999943 899999997665544433
No 18
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=95.10 E-value=0.075 Score=35.40 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=46.8
Q ss_pred CccEEEEEeeecCCeeEEEEecccCC----CCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHH
Q psy8931 4 LKPIDLQVATRSGNKKVTLVNNLDVY----GIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLL 73 (95)
Q Consensus 4 ~~~I~I~~~~R~g~K~vT~V~Gle~f----~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L 73 (95)
.|+.++.++.+ + -|++.||.+. .=+++-+.+.|...+++++++.+. +...|+|.+...-.+-+
T Consensus 6 ~p~~~v~~eG~---~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~~---~rlii~G~~~~~~i~~~ 72 (110)
T smart00653 6 MPPPQVLREGK---G-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGK---GRLIVNGRFTPKKLQDL 72 (110)
T ss_pred cCCCeEEEEcC---C-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECCC---CeEEEEEeeCHHHHHHH
Confidence 45556665544 3 6888998654 457999999999999999999753 68999999765544433
No 19
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=94.29 E-value=0.085 Score=35.86 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=45.0
Q ss_pred CccEEEEEeeecCCeeEEEEecccCC----CCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHH
Q psy8931 4 LKPIDLQVATRSGNKKVTLVNNLDVY----GIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHN 71 (95)
Q Consensus 4 ~~~I~I~~~~R~g~K~vT~V~Gle~f----~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~ 71 (95)
+|++.+.++.+ .=|++.||... .-|++-+++.|...+++++++.+. +...|+|.+...-.+
T Consensus 19 mP~~~v~~eG~----~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~~---~~lii~G~~~~~~i~ 83 (125)
T PF01873_consen 19 MPPPQVKIEGK----KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDGK---GRLIINGRFSSKQIQ 83 (125)
T ss_dssp CCT--EEEETS----TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEETT---TEEEEESSSSCCHHH
T ss_pred cCCCeEEEEcc----ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECCC---CEEEEEEecCHHHHH
Confidence 46666665554 45888898754 458999999999999999999864 699999996544333
No 20
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=94.20 E-value=0.13 Score=37.46 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=46.2
Q ss_pred CccEEEEEeeecCCeeEEEEecccCC----CCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHh
Q psy8931 4 LKPIDLQVATRSGNKKVTLVNNLDVY----GIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLT 74 (95)
Q Consensus 4 ~~~I~I~~~~R~g~K~vT~V~Gle~f----~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~ 74 (95)
.|+.++.++. +| |++.||.+. .=+++-+.+.|...+++++++.+ +...|+|.+...-.+-+.
T Consensus 26 ~p~~~v~~eG---~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~~~----~~~ii~G~~~~~~i~~~l 91 (201)
T PRK12336 26 IPEPKIFIEG---KT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGKIEG----GRAVFNGKFTEEDIQAAI 91 (201)
T ss_pred cCCceEEEEc---Cc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCcceecC----CEEEEEeeeCHHHHHHHH
Confidence 4555555554 33 899998654 45789999999999999999975 689999997655444433
No 21
>PRK14451 acylphosphatase; Provisional
Probab=93.20 E-value=0.69 Score=29.42 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=46.5
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
.|+|.-. |+-...++..+..+++-+|.|...++. .+|.+||+.. .|.+|+.. ..|-|...|+-+
T Consensus 8 ~V~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v 73 (89)
T PRK14451 8 YISGRVQ-GVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKED-KLEEFYTWLQKGPLNARVDVC 73 (89)
T ss_pred EEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHH-HHHHHHHHHhhCCCceEEEEE
Confidence 3677665 888899999999999999999987765 9999999863 36665544 235444444433
No 22
>PRK14434 acylphosphatase; Provisional
Probab=92.94 E-value=0.67 Score=29.67 Aligned_cols=65 Identities=6% Similarity=0.025 Sum_probs=46.5
Q ss_pred EEecccCCCCCHHHHHHHHhhhcc-cceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCC-cCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVA-ASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQ-KRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~a-cs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip-~~~I~~~ 87 (95)
.|+|.-. |+-..-+...+.++++ =.|.|...++. .+|.+||+..+.|.+|+.. +.|-| ...|+-+
T Consensus 7 ~v~G~VQ-GVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~pp~a~V~~v 75 (92)
T PRK14434 7 IVSGRVQ-GVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPSKWAKVTYV 75 (92)
T ss_pred EEEEeec-ceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 4566654 6777788888889999 99999987765 8999999865556555544 23665 5555543
No 23
>PRK14449 acylphosphatase; Provisional
Probab=92.69 E-value=1.1 Score=28.46 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=47.5
Q ss_pred EEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 21 TLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 21 T~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
-.|+|.-. |+-...+...+...++=+|.|...++. .+|.+||+.. .|.+|+.. +.|-|...|+-+
T Consensus 7 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~v~~f~~~l~~~~~~a~V~~i 73 (90)
T PRK14449 7 LRITGHVQ-GVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDEE-NIKELINFIKTGLRWARVDNV 73 (90)
T ss_pred EEEEEeec-CcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCHH-HHHHHHHHHhhCCCceEEEEE
Confidence 35677654 888888999999999999999988775 9999999863 36666544 224455555544
No 24
>PRK14425 acylphosphatase; Provisional
Probab=92.35 E-value=0.89 Score=29.16 Aligned_cols=64 Identities=5% Similarity=0.114 Sum_probs=45.5
Q ss_pred EEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChH--HHHHHHHhhhcCCCcCceEEc
Q psy8931 21 TLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQI--VFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 21 T~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~--~~v~~~L~~~~gip~~~I~~~ 87 (95)
-.|+|.-. |+-...++..+..+++=+|.|...+++ .||.+||+.. +...+.|.+ |=|...|+-+
T Consensus 10 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~--gp~~a~V~~i 76 (94)
T PRK14425 10 VRITGRVQ-GVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR--GPPGASVSGV 76 (94)
T ss_pred EEEEEeEe-cccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh--CCCceEEEEE
Confidence 34567654 777888899999999999999988766 9999999755 444444442 5444444443
No 25
>PRK14436 acylphosphatase; Provisional
Probab=91.55 E-value=1.7 Score=27.71 Aligned_cols=65 Identities=8% Similarity=0.063 Sum_probs=46.6
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEcc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGLE 88 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~~ 88 (95)
.|+|.-. |+-...++..+..+++=+|.|...++. .+|.+||+-. .|.+|+.. +.|-|...|+-++
T Consensus 9 ~v~G~VQ-GVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v~ 75 (91)
T PRK14436 9 RIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEE-RVEALIGWAHQGPPLARVTRVE 75 (91)
T ss_pred EEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCHH-HHHHHHHHHhhCCCceEEEEEE
Confidence 4566654 777888899999999999999987765 8999999863 36666654 2354544555443
No 26
>PRK14444 acylphosphatase; Provisional
Probab=91.45 E-value=1.7 Score=27.68 Aligned_cols=65 Identities=5% Similarity=0.158 Sum_probs=46.3
Q ss_pred EEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhhh-cCCCcCceEEc
Q psy8931 21 TLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTEK-FNIQKRFIRGL 87 (95)
Q Consensus 21 T~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~~-~gip~~~I~~~ 87 (95)
-.|+|.-. |+-..-++..+...++=+|.|...++. .+|.+||+-. .|.+|+..- .|=|...|+-+
T Consensus 8 i~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~i 74 (92)
T PRK14444 8 VFISGRVQ-GVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSRP-AVQKMISWCYSGPSHARVERV 74 (92)
T ss_pred EEEEEeeC-CcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHH-HHHHHHHHHHhCCCCcEEEEE
Confidence 45677665 778888899999999999999987765 7999999954 366666552 24333444433
No 27
>PRK14437 acylphosphatase; Provisional
Probab=91.29 E-value=1.5 Score=29.09 Aligned_cols=64 Identities=8% Similarity=0.018 Sum_probs=47.4
Q ss_pred EEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEE
Q psy8931 21 TLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRG 86 (95)
Q Consensus 21 T~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~ 86 (95)
-.|+|.-. |+-...++..+..+++=+|.|...+++ .+|.+||+.. .|.+|+.. +.|=|...|+-
T Consensus 27 i~V~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~ie~f~~~L~~gP~~a~V~~ 92 (109)
T PRK14437 27 ATVSGKVQ-GVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERD-SIMILTEWLWEGPPQAAVSN 92 (109)
T ss_pred EEEEEecC-CcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHH-HHHHHHHHHHhCCCceEEEE
Confidence 35788776 888899999999999999999988766 9999999875 45555443 22444444443
No 28
>PRK14443 acylphosphatase; Provisional
Probab=91.20 E-value=1.4 Score=28.33 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=44.0
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCC-cCceEE
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQ-KRFIRG 86 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip-~~~I~~ 86 (95)
.|+|.-. |+-...++..+..+++=+|.|...++. .+|.+||+... |.+|+.. ..|-| ...|+-
T Consensus 9 ~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~l~~g~p~~a~V~~ 74 (93)
T PRK14443 9 RVTGFVQ-GVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEEN-LNKFIDAIKKGPSPGCRIEH 74 (93)
T ss_pred EEEEeeC-CccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHH-HHHHHHHHhcCCCCcEEEEE
Confidence 4566654 777788899999999999999987765 99999998433 4444443 23654 444443
No 29
>PRK14420 acylphosphatase; Provisional
Probab=91.04 E-value=1.8 Score=27.35 Aligned_cols=64 Identities=8% Similarity=0.177 Sum_probs=44.8
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
.|+|.-. |+-...++..+...++=+|.|...++. .+|.+||+- +.|.+|+.. +.|-|...|.-+
T Consensus 7 ~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~~p~~a~V~~i 72 (91)
T PRK14420 7 IVDGRVQ-GVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAIEKGSPFSKVTDV 72 (91)
T ss_pred EEEEeeC-CcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHHHhCCCCCEEEEE
Confidence 4566544 666777888888888899999987765 899999984 556666654 236444445443
No 30
>PRK14427 acylphosphatase; Provisional
Probab=91.02 E-value=1.7 Score=27.87 Aligned_cols=64 Identities=9% Similarity=0.117 Sum_probs=45.6
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
.|+|.-. |+-..-++..+...++=+|.|...++. .+|.+||+... |.+|+.. +.|=|...|+-+
T Consensus 11 ~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~-i~~f~~~l~~~p~~a~V~~i 76 (94)
T PRK14427 11 RVFGVVQ-GVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQ-VEKLLDWLNSDRAPGRVERV 76 (94)
T ss_pred EEEEEeC-CcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHhhCCCCcEEEEE
Confidence 4566654 777888999999999999999988766 89999998743 6666554 225233334433
No 31
>PRK14452 acylphosphatase; Provisional
Probab=91.01 E-value=2.1 Score=28.33 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=47.0
Q ss_pred EEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEE
Q psy8931 21 TLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRG 86 (95)
Q Consensus 21 T~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~ 86 (95)
-.|+|.-. |+-..-++..+..+++=+|.|...+++ .+|.+||+.. .|.+|+.- +.|=|...|+-
T Consensus 24 i~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~~~l~~gP~~A~V~~ 89 (107)
T PRK14452 24 FLIEGRVQ-GVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELRAWCERGPPGARVKR 89 (107)
T ss_pred EEEEEeec-CcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHHHhcCCCCcEEEE
Confidence 45678765 888899999999999999999988765 9999999964 56666332 12444444443
No 32
>PRK14438 acylphosphatase; Provisional
Probab=90.94 E-value=1.6 Score=27.68 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=46.4
Q ss_pred EEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 21 TLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 21 T~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
-.|+|.-. |+-...++..+..+++=+|.|...++. .+|.+||+. +.|.+|+.. +.|=|...|+-+
T Consensus 7 i~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v 73 (91)
T PRK14438 7 VTVKGLVQ-GVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDWCHHGPSRARVSGV 73 (91)
T ss_pred EEEEEecC-CcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHHHhhCCCCcEEEEE
Confidence 35667655 777888899999999999999988876 799999985 336666544 235444445443
No 33
>PRK14450 acylphosphatase; Provisional
Probab=90.75 E-value=2.3 Score=26.93 Aligned_cols=63 Identities=13% Similarity=0.259 Sum_probs=45.5
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC--cEEEEcCC--hHHHHHHHHhhhcCCCcCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA--AQVQVQGN--QIVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~--~eI~iQGd--~~~~v~~~L~~~~gip~~~I~~~ 87 (95)
+|+|.-. |+-...++..+..+++=+|.|...++. .||.+||+ ..+...++|.+ |=|...|+-+
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~~--gp~~a~V~~v 73 (91)
T PRK14450 7 IVKGKVQ-GVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLRS--GPPRAEVKEV 73 (91)
T ss_pred EEEEEec-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh--CCCCcEEEEE
Confidence 5667654 778888999999999999999987654 79999999 55556666643 5444445443
No 34
>PRK14439 acylphosphatase; Provisional
Probab=90.71 E-value=1.6 Score=31.10 Aligned_cols=67 Identities=9% Similarity=0.066 Sum_probs=47.9
Q ss_pred EEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhhh--cCCCcCceEEcc
Q psy8931 20 VTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTEK--FNIQKRFIRGLE 88 (95)
Q Consensus 20 vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~~--~gip~~~I~~~~ 88 (95)
--.|+|.-+ |+-...++..+..+++=+|.|...+++ .+|.+||+... |.+|+..- .|=|...|+-++
T Consensus 78 ~i~VsGrVQ-GVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~-Ie~Fi~~L~~~gPp~A~Ve~I~ 147 (163)
T PRK14439 78 IAWVYGRVQ-GVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQ-VEKLMQWLKSGGPRSARVERVL 147 (163)
T ss_pred EEEEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHhhCCCCCeEEEEEE
Confidence 345678765 888899999999999999999987655 89999998643 55555441 343444455443
No 35
>PRK14445 acylphosphatase; Provisional
Probab=90.65 E-value=1.9 Score=27.38 Aligned_cols=65 Identities=12% Similarity=0.289 Sum_probs=46.2
Q ss_pred EEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 21 TLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 21 T~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
-.|+|.-. |+-...++..+...++=+|.|...++. .+|.+||+... |.+|+.. +.|=|...|+-+
T Consensus 8 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~l~~gP~~a~V~~i 74 (91)
T PRK14445 8 LIVSGLVQ-GVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGM-IDELIKQAERGPSRSSVTSI 74 (91)
T ss_pred EEEEEEEc-CcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 34567654 777888999999999999999987765 89999998633 6666554 224333445443
No 36
>PRK14433 acylphosphatase; Provisional
Probab=90.56 E-value=2 Score=27.19 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=41.4
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE 75 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~ 75 (95)
.|+|.-. |+-...++..+..+++=+|.|...++. .||.+||+-. .|.+|+..
T Consensus 6 ~v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 58 (87)
T PRK14433 6 LVSGRVQ-GVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHW 58 (87)
T ss_pred EEEEeee-CcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHH
Confidence 4567554 777888899999999999999988765 8999999964 56666654
No 37
>PRK14422 acylphosphatase; Provisional
Probab=90.47 E-value=2.6 Score=26.97 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=45.1
Q ss_pred EEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEE
Q psy8931 21 TLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRG 86 (95)
Q Consensus 21 T~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~ 86 (95)
-.|+|.-. |+-...+...+...+.=+|.|...++. .+|.+||+... |.+|+.. +-|=|...|+-
T Consensus 10 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gp~~a~V~~ 75 (93)
T PRK14422 10 AWVHGHVQ-GVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAA-CEKLLQLLRGDDTPGRVDK 75 (93)
T ss_pred EEEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHHhCCCCcEEEE
Confidence 34567654 778888999999999999999987765 89999998654 5555443 22533333443
No 38
>PRK14431 acylphosphatase; Provisional
Probab=90.33 E-value=1.8 Score=27.48 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=45.1
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCCh--HHHHHHHHhhhcCC-CcCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQ--IVFVHNLLTEKFNI-QKRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~--~~~v~~~L~~~~gi-p~~~I~~~ 87 (95)
.|+|.-. |+-..-++..+.++++=+|.|...++..+|.+||+. .+.+.++|.+ |- |...|+-+
T Consensus 7 ~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dgVei~~qG~~~~l~~f~~~l~~--g~p~~a~V~~v 72 (89)
T PRK14431 7 QVFGRVQ-GVGFRYFTQRIAMNYNIVGTVQNVDDYVEIYAQGDDADLERFIQGVIE--GASPASNVTSY 72 (89)
T ss_pred EEEEecC-CeeEhHHHHHHHhhcCCEEEEEECCCcEEEEEEcCHHHHHHHHHHHhc--CCCCcEEEEEE
Confidence 4566654 777788889999999999999987777999999985 4444444444 66 35555543
No 39
>PRK14429 acylphosphatase; Provisional
Probab=90.28 E-value=2 Score=27.22 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=44.2
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
.|+|.-. |+-...+...+...++=+|.|...++. .+|.+||+... |.+|+.. +.|-|...|+-+
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-i~~f~~~l~~gp~~a~V~~i 72 (90)
T PRK14429 7 KLTGKVQ-GVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPA-VDNLIAWCEVGVPCTEVLRV 72 (90)
T ss_pred EEEEeec-CeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHH-HHHHHHHHhhCCCceEEEEE
Confidence 3556544 667788888999999999999987765 89999998643 4555443 236444445544
No 40
>PRK14423 acylphosphatase; Provisional
Probab=90.22 E-value=1.9 Score=27.40 Aligned_cols=64 Identities=6% Similarity=0.104 Sum_probs=45.8
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
.|+|.-. |+-...++..+..+++=.|.|...++. .+|.+||+.. .|.+|+.. +.|-|...|+-+
T Consensus 10 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gp~~a~V~~v 75 (92)
T PRK14423 10 FVSGRVQ-GVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEWCHEGSPAAVVEDV 75 (92)
T ss_pred EEEEecC-CeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHHHHhCCCceEEEEE
Confidence 4566554 777888899999999999999988766 7999999865 46666544 235444444443
No 41
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=90.17 E-value=2.6 Score=26.30 Aligned_cols=65 Identities=9% Similarity=0.210 Sum_probs=46.3
Q ss_pred EEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 21 TLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 21 T~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
-+|+|.-. |+-...++..+...++=.|.|...++. .+|.+||+. +.|.+|+.. +.|-|...|.-+
T Consensus 8 i~v~G~VQ-GVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~l~~g~p~a~V~~i 74 (91)
T PF00708_consen 8 IIVSGRVQ-GVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKWLKKGPPPARVDEI 74 (91)
T ss_dssp EEEEEETS-SSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHHHHHSSTTSEEEEE
T ss_pred EEEEEEEC-cCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHHHHhCCCCcEEEEE
Confidence 35778655 888999999999999999999987776 999999974 335555443 236666666543
No 42
>PRK14447 acylphosphatase; Provisional
Probab=90.15 E-value=2.5 Score=27.05 Aligned_cols=65 Identities=6% Similarity=0.057 Sum_probs=45.7
Q ss_pred EEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC--cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 21 TLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA--AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 21 T~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~--~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
-.|+|.-+ |+-..-++..+..+++=.|.|...+++ .+|.+||+ .+.|.+|+.. +.|=|...|+-+
T Consensus 8 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~l~~gp~~a~V~~v 75 (95)
T PRK14447 8 LFIRGKVQ-GVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEWARVGPPGARVEDV 75 (95)
T ss_pred EEEEEecC-CccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHHHhhCCCCeEEEEE
Confidence 34577665 788888999999999999999987765 79999998 4455555543 124444444443
No 43
>PRK14440 acylphosphatase; Provisional
Probab=90.10 E-value=2.6 Score=26.80 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=40.0
Q ss_pred EEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh
Q psy8931 21 TLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE 75 (95)
Q Consensus 21 T~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~ 75 (95)
-.|+|.-. |+-...+...+...++=+|.|...++. .+|.+||+. +.|.+|+..
T Consensus 7 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14440 7 ARVYGLVQ-GVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLER 60 (90)
T ss_pred EEEEEeEe-ccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHH
Confidence 34566554 667778888888888899999987765 899999987 556666654
No 44
>PRK14446 acylphosphatase; Provisional
Probab=90.05 E-value=1.7 Score=27.66 Aligned_cols=64 Identities=8% Similarity=0.003 Sum_probs=46.3
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
.|+|.-. |+-..-++..+.++++=.|.|...++. .+|.+||+-. .+.+|+.. +.|=|...|+-+
T Consensus 7 ~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~l~~gP~~a~V~~v 72 (88)
T PRK14446 7 VVSGVVQ-GVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAWLWQGPPAATVAAV 72 (88)
T ss_pred EEEEecC-CeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHHHhhCCCceEEEEE
Confidence 4566654 777788899999999999999998876 9999999854 55555544 134455555543
No 45
>PRK14421 acylphosphatase; Provisional
Probab=89.50 E-value=3 Score=27.16 Aligned_cols=63 Identities=5% Similarity=0.106 Sum_probs=44.7
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEE
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRG 86 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~ 86 (95)
.|+|.-. |+-...++..+...++=+|.|...++. .+|.+||+... |.+|+.. +.|=|...|+-
T Consensus 9 ~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gP~~a~V~~ 73 (99)
T PRK14421 9 TIRGRVQ-GVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADA-VAEMIARCRRGPSAARVDA 73 (99)
T ss_pred EEEEeEc-CccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHH-HHHHHHHHHhCCCCcEEEE
Confidence 4566654 777888899999999999999988776 99999998643 5555543 12434444443
No 46
>PRK14428 acylphosphatase; Provisional
Probab=89.43 E-value=3.2 Score=26.89 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=46.1
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhhh-cCCCcCceEE
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTEK-FNIQKRFIRG 86 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~~-~gip~~~I~~ 86 (95)
.|+|.-. |+-..-++..+..+++=.|.|...++. .+|.+||+. +.|.+|+..- .|=|...|+-
T Consensus 13 ~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~l~~gP~~a~V~~ 77 (97)
T PRK14428 13 VVTGLVQ-GVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQLAIGPRWSEVSH 77 (97)
T ss_pred EEEEecC-CccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHHHhhCCCccEEEE
Confidence 5667665 778888999999999999999998765 999999985 4566665541 2444444443
No 47
>PRK14442 acylphosphatase; Provisional
Probab=89.35 E-value=2.9 Score=26.56 Aligned_cols=52 Identities=10% Similarity=0.106 Sum_probs=41.5
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE 75 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~ 75 (95)
+|+|.-. |+-...++..+...++=+|.|...++. .+|.+||+.. .|.+|+..
T Consensus 9 ~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~ 61 (91)
T PRK14442 9 YVGGRVQ-GVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALERW 61 (91)
T ss_pred EEEEecC-CccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHH
Confidence 4577665 777888899999999999999988766 9999999865 36666544
No 48
>PRK14426 acylphosphatase; Provisional
Probab=88.60 E-value=3.7 Score=26.11 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=44.8
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCc-CceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQK-RFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~-~~I~~~ 87 (95)
.|+|.-. |+-...+...+..+++=+|.|...++. .+|.+||+... |.+|+.. +.|.|+ ..|+-+
T Consensus 9 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~g~P~~a~V~~i 75 (92)
T PRK14426 9 WVYGRVQ-GVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQ-VEKLMEWLKEGGPRSARVDRV 75 (92)
T ss_pred EEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHH-HHHHHHHHhcCCCCCeEEEEE
Confidence 4566654 777788889999999999999987765 89999999533 5555544 236454 334433
No 49
>PRK14435 acylphosphatase; Provisional
Probab=88.00 E-value=3.9 Score=25.90 Aligned_cols=52 Identities=12% Similarity=0.312 Sum_probs=40.0
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE 75 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~ 75 (95)
.|+|.-. |+-...+...+..+++=+|.|...++. .+|.+||+-. .|.+|+..
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 59 (90)
T PRK14435 7 RVEGIVQ-GVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDEN-ALRRFLNE 59 (90)
T ss_pred EEEEEeC-CcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHH-HHHHHHHH
Confidence 4566654 777788888888999999999987765 9999999863 36666544
No 50
>PRK14448 acylphosphatase; Provisional
Probab=87.85 E-value=5.1 Score=25.39 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=41.1
Q ss_pred EEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh
Q psy8931 21 TLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE 75 (95)
Q Consensus 21 T~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~ 75 (95)
-.|+|.-. |+-...+...+...++=+|.|...++. .+|.+||+-.. |.+|+..
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~-v~~f~~~ 59 (90)
T PRK14448 6 FIVYGHVQ-GVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQ-IAAFRDW 59 (90)
T ss_pred EEEEEeec-CcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHH-HHHHHHH
Confidence 35667665 788888999999999999999987765 89999998633 5555544
No 51
>PRK14441 acylphosphatase; Provisional
Probab=86.98 E-value=5.2 Score=25.48 Aligned_cols=64 Identities=8% Similarity=0.108 Sum_probs=44.9
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
.|+|.-. |+-...++..+...++=.|.|...++. .+|.+||+-. .|.+|+.. +.|=|...|+-+
T Consensus 10 ~v~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v 75 (93)
T PRK14441 10 VVSGRVQ-GVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERA-AVGALVRWCHAGPPAARVDRV 75 (93)
T ss_pred EEEEecC-CccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEE
Confidence 4566654 777888899999999999999988776 8999999843 44444433 124444445543
No 52
>PRK14432 acylphosphatase; Provisional
Probab=86.40 E-value=5.6 Score=25.40 Aligned_cols=52 Identities=6% Similarity=0.152 Sum_probs=39.0
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEc-CChHHHHHHHHhh
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQ-GNQIVFVHNLLTE 75 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQ-Gd~~~~v~~~L~~ 75 (95)
+|+|.-. |+-...++..+...++=.|.|...+++ .+|.+| |+. +.|.+|+..
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~ 60 (93)
T PRK14432 7 FISGKVQ-GVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKL 60 (93)
T ss_pred EEEEeec-CeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHH
Confidence 4566554 677778888888889999999987765 899998 985 445555543
No 53
>PRK14424 acylphosphatase; Provisional
Probab=84.87 E-value=8.1 Score=24.80 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=41.6
Q ss_pred EEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh
Q psy8931 20 VTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE 75 (95)
Q Consensus 20 vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~ 75 (95)
--+|+|--. |+-...++..+..+++=.|.|...++. .+|.+||+-.. |.+|+..
T Consensus 10 ~~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-v~~f~~~ 64 (94)
T PRK14424 10 YVRVRGVVQ-GVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQ-IDRMLAW 64 (94)
T ss_pred EEEEEEeec-CCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHH-HHHHHHH
Confidence 345677654 778888888999999999999987765 89999998643 5555543
No 54
>PRK14430 acylphosphatase; Provisional
Probab=83.29 E-value=9 Score=24.39 Aligned_cols=63 Identities=6% Similarity=0.102 Sum_probs=42.1
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChH--HHHHHHHhhhcCCCcCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQI--VFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~--~~v~~~L~~~~gip~~~I~~~ 87 (95)
.|.|.-. |+-...++..+..+++=.|.|...++. .||.+||+-. +.+.++|. .|=|...|+-+
T Consensus 9 ~v~G~VQ-GVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l~--~gp~~a~V~~v 74 (92)
T PRK14430 9 VAHGRVQ-GVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWME--AGPPAAQVTKV 74 (92)
T ss_pred EEEEeec-ceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHH--hCCCceEEEEE
Confidence 4555443 566677888888888899999987765 8999999742 44444442 34454444443
No 55
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=80.39 E-value=2.5 Score=27.04 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=28.2
Q ss_pred HHhhhcccceEEeeCCCC--cEEEEcCC-hHHHHHHHHhhhcCCCcCceEE
Q psy8931 39 LCQHGVAASTCINMVNNA--AQVQVQGN-QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 39 ~lkk~~acs~sv~~~~g~--~eI~iQGd-~~~~v~~~L~~~~gip~~~I~~ 86 (95)
.|+-.|-++|||.++... .|+.+.-+ ..+.+.++|.+ +|++.+.++.
T Consensus 4 flrG~Fl~~Gsi~~P~~~YhLEi~~~~~e~a~~l~~lL~~-~~i~~k~~~r 53 (93)
T PF14527_consen 4 FLRGAFLACGSISDPKKSYHLEIRFNDEEFAEQLKELLNK-FGINAKIIKR 53 (93)
T ss_dssp HHHHHHHHHEEE--TTT---EEEEES-HHHHHHHHHHHHH-H----EEEEE
T ss_pred HHHHHHHCCeeccCCCCceEEEEecCCHHHHHHHHHHHHH-cCCCceeeee
Confidence 467788899999986543 78887765 56666667776 8999886654
No 56
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=73.19 E-value=22 Score=22.85 Aligned_cols=62 Identities=8% Similarity=0.140 Sum_probs=44.8
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceE
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIR 85 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~ 85 (95)
.|.|--+ |+.....++.....++=.|-|...+++ .||..||+... +..|+.. ..|-|...++
T Consensus 9 ~V~GrVQ-GVGFR~~~~~~A~~lgl~G~V~N~~DGsVeiva~G~~~~-v~~~~~~l~~g~~~a~V~ 72 (92)
T COG1254 9 RVYGRVQ-GVGFRYFTRSEALRLGLTGWVKNLDDGSVEIVAEGPDEA-VEKFIEWLRKGPPAAKVE 72 (92)
T ss_pred EEEEEec-cccHHHHHHHHHHHCCCEEEEEECCCCeEEEEEEcCHHH-HHHHHHHHHhCCCceEEE
Confidence 4555544 778888888888999999999987765 99999999776 6666544 2463333333
No 57
>PF03958 Secretin_N: Bacterial type II/III secretion system short domain; InterPro: IPR005644 This is a group of NolW-like proteins, which are closely related to bacterial type II and III secretion system protein (IPR004846 from INTERPRO).; PDB: 3EZJ_C 2Y3M_A 3OSS_D.
Probab=72.22 E-value=4.8 Score=24.04 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHhhhcc--------------------cceEEeeCCCCcEEEEcCC--hHHHHHHHHhhhcCCCc
Q psy8931 29 YGIDLKEFCKLCQHGVA--------------------ASTCINMVNNAAQVQVQGN--QIVFVHNLLTEKFNIQK 81 (95)
Q Consensus 29 f~idl~~lak~lkk~~a--------------------cs~sv~~~~g~~eI~iQGd--~~~~v~~~L~~~~gip~ 81 (95)
...+.++++..|+..++ -+.+|...+....|+|.|+ ....|.+++.+ ..+|.
T Consensus 7 ~~~~A~~v~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~tNsliv~g~~~~~~~i~~li~~-LD~p~ 80 (82)
T PF03958_consen 7 KYASAEEVASVLQQLLGGGSGSSSGSGGSSGSGSSGSSSGRIVADERTNSLIVRGTPEDLEQIRELIKQ-LDVPP 80 (82)
T ss_dssp SSS-HHHHHHHHHHHH----------------S-HHHTTTEEEEECTTTEEEEEEEHHHHHHHHHHHHH-HHHHT
T ss_pred eCCcHHHHHHHHHHHhhhhcccccccccccccccCCCCCeEEEEECCCCEEEEEeCHHHHHHHHHHHHH-HCCCC
Confidence 35688999999999994 4456666666688889887 55566666655 54443
No 58
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=68.68 E-value=1.6 Score=29.81 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcccceEEeeCCCC---------cEEEEcCChHHHHHHHHhhhcC
Q psy8931 34 KEFCKLCQHGVAASTCINMVNNA---------AQVQVQGNQIVFVHNLLTEKFN 78 (95)
Q Consensus 34 ~~lak~lkk~~acs~sv~~~~g~---------~eI~iQGd~~~~v~~~L~~~~g 78 (95)
.+|+++|+=-.+++-|+.++... .+-+-+|.-.++|.+||+++||
T Consensus 35 ~~L~~~LRC~vCqnqsiadS~a~iA~dmR~~Vr~~i~~G~Sd~eI~~~~v~RYG 88 (126)
T TIGR03147 35 VALAKSLRCPQCQNQNLVESNSPIAYDLRHEVYSMVNEGKSNQQIIDFMTARFG 88 (126)
T ss_pred HHHHHhCCCCCCCCCChhhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 35666666666667788776543 4556799999999999999998
No 59
>PF11388 DotA: Phagosome trafficking protein DotA; InterPro: IPR021528 DotA is essential for intracellular growth in Legionella []. DotA is thought to play an important role in regulating initial phagosome trafficking decisions either upon or immediately after macrophage uptake [].
Probab=67.55 E-value=3.7 Score=27.07 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=20.8
Q ss_pred EEecccCCCCCHHHHHHHHhhhcc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVA 45 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~a 45 (95)
.++|||...+|+..|.|.|.+.|.
T Consensus 3 s~tgle~s~fd~~ql~k~f~~tc~ 26 (105)
T PF11388_consen 3 SNTGLEKSNFDPAQLTKPFGKTCQ 26 (105)
T ss_pred cccccccccCCHHHhhhhhhcccc
Confidence 368999999999999999999553
No 60
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=66.71 E-value=6.5 Score=26.00 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhhcCCCcCceEE
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~ 86 (95)
+...+.++|.+++|||++.|.+
T Consensus 77 ~s~~i~~~l~~~LgIp~dRiYI 98 (113)
T PTZ00450 77 MTPRITAAITKECGIPAERIYV 98 (113)
T ss_pred HHHHHHHHHHHHcCCCcccEEE
Confidence 4577899999999999999887
No 61
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=65.89 E-value=8.6 Score=23.84 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=21.6
Q ss_pred cCChHHHHHHHHhhhcCCCcCceEEcc
Q psy8931 62 QGNQIVFVHNLLTEKFNIQKRFIRGLE 88 (95)
Q Consensus 62 QGd~~~~v~~~L~~~~gip~~~I~~~~ 88 (95)
-|--=+.+.+||.+.+|+|+..|+++-
T Consensus 38 ~GkAN~ali~~La~~l~v~ks~i~i~~ 64 (77)
T PF02594_consen 38 DGKANKALIRFLAKALGVPKSDIEIVS 64 (77)
T ss_dssp CCCHHHHHHHHHHHHCT--TTCEEECC
T ss_pred cChhHHHHHHHHHHHhCCCcccEEEEe
Confidence 467778899999999999999999863
No 62
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=63.81 E-value=16 Score=26.07 Aligned_cols=63 Identities=24% Similarity=0.258 Sum_probs=41.5
Q ss_pred CeeEEEEecccCCCCCHHHHHHHHhh-hcccceEEeeCCCCcEEEEcCChHH---HHHHHHhh-hcCCCcCceE
Q psy8931 17 NKKVTLVNNLDVYGIDLKEFCKLCQH-GVAASTCINMVNNAAQVQVQGNQIV---FVHNLLTE-KFNIQKRFIR 85 (95)
Q Consensus 17 ~K~vT~V~Gle~f~idl~~lak~lkk-~~acs~sv~~~~g~~eI~iQGd~~~---~v~~~L~~-~~gip~~~I~ 85 (95)
|..+++..|++.- ..+++.+.++- ++-.-+++.. ++|-|.|-.++ .+..+|.+ .+++|-.|.-
T Consensus 91 rq~i~lk~GI~~e--~AKkIvK~IKd~klKVqa~IQG----d~vRVtgKkrDDLQ~viallk~~d~~~pLQF~N 158 (161)
T PRK05412 91 KQEVKLKQGIDQE--LAKKIVKLIKDSKLKVQAQIQG----DQVRVTGKKRDDLQAVIALLRKADLGQPLQFNN 158 (161)
T ss_pred EEEEehhhccCHH--HHHHHHHHHHhcCCceeEEecC----cEEEEecCCHhHHHHHHHHHHhccCCCCceecc
Confidence 4567777777751 24555555553 3345566766 89999995555 77778876 6899987754
No 63
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=59.62 E-value=12 Score=30.76 Aligned_cols=66 Identities=14% Similarity=0.252 Sum_probs=47.0
Q ss_pred cCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEE-------------------------eeC---CCC-cEEEEcCCh
Q psy8931 15 SGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCI-------------------------NMV---NNA-AQVQVQGNQ 65 (95)
Q Consensus 15 ~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv-------------------------~~~---~g~-~eI~iQGd~ 65 (95)
..+..|-+|.|++.|.-|+.++.+.|. .|+.-..+ .+. +.+ .-|.+|.-.
T Consensus 218 ~~~~~VNii~g~~~~~gd~~eikrlL~-~~Gi~~~~l~d~s~~~d~p~~g~~~~~~ggttleei~~a~~A~~~ivl~~~~ 296 (515)
T TIGR01286 218 GSNGKINIIPGFETYIGNFREIKRILS-LMGVGYTLLSDPEEVLDTPADGEFRMYAGGTTLEEMKDAPNAEATVLLQPYT 296 (515)
T ss_pred CCCCeEEEECCCCCCchhHHHHHHHHH-HcCCCeEEccCccccccCCCCCCccccCCCCCHHHHHHhhhCcEEEEEchhh
Confidence 346789999999888778888877776 34443332 110 111 468888877
Q ss_pred HHHHHHHHhhhcCCCc
Q psy8931 66 IVFVHNLLTEKFNIQK 81 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~ 81 (95)
.....++|.++||+|.
T Consensus 297 ~~~~a~~l~~~~g~p~ 312 (515)
T TIGR01286 297 LRKTKEYIEKTWKQET 312 (515)
T ss_pred hHHHHHHHHHHhCCCc
Confidence 8889999999999985
No 64
>PRK05090 hypothetical protein; Validated
Probab=58.30 E-value=13 Score=24.17 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=24.2
Q ss_pred EcCChHHHHHHHHhhhcCCCcCceEEcc
Q psy8931 61 VQGNQIVFVHNLLTEKFNIQKRFIRGLE 88 (95)
Q Consensus 61 iQGd~~~~v~~~L~~~~gip~~~I~~~~ 88 (95)
+.|---+.+.+||.+.+|+|+..|+++.
T Consensus 43 veGkAN~ali~~LAk~l~v~ks~I~i~~ 70 (95)
T PRK05090 43 VDGQANAHLLKFLAKQFRVAKSQVVIEK 70 (95)
T ss_pred CCChHHHHHHHHHHHHhCCChhhEEEEe
Confidence 3577778899999999999999999853
No 65
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=57.30 E-value=10 Score=24.59 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=17.4
Q ss_pred hHHHHHHHHhhhcCCCcCceEE
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~ 86 (95)
+...|.++|.+++|||.+.|.+
T Consensus 75 ~s~~i~~~l~~~LgIp~~Riyi 96 (114)
T PF01187_consen 75 YSAAITEFLEEELGIPPDRIYI 96 (114)
T ss_dssp HHHHHHHHHHHHHT--GGGEEE
T ss_pred HHHHHHHHHHHHhCCCcCceEE
Confidence 5667899999999999999887
No 66
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=57.16 E-value=16 Score=24.20 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=25.6
Q ss_pred EEEcCChHHHHHHHHhhhcCCCcCceEEc
Q psy8931 59 VQVQGNQIVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 59 I~iQGd~~~~v~~~L~~~~gip~~~I~~~ 87 (95)
.-++|---+.+..||.+.+++|+..|+++
T Consensus 45 pP~~GKAN~~li~~Lak~~~v~kS~V~iv 73 (102)
T COG1872 45 PPVDGKANEELIKFLAKTFGVPKSSVEIV 73 (102)
T ss_pred CCCCcchhHHHHHHHHHHhCCCcccEEEE
Confidence 34678888999999999999999999985
No 67
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=56.72 E-value=20 Score=27.84 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=44.8
Q ss_pred CCeeEEEEecccCCCCCHHHHHHHHhhh-------cccceEEeeCC---CC-cEEEEcCChHHHHHHHHhhhcCCCcCc
Q psy8931 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHG-------VAASTCINMVN---NA-AQVQVQGNQIVFVHNLLTEKFNIQKRF 83 (95)
Q Consensus 16 g~K~vT~V~Gle~f~idl~~lak~lkk~-------~acs~sv~~~~---g~-~eI~iQGd~~~~v~~~L~~~~gip~~~ 83 (95)
.++.|-++-++. +.-|+.++.+.|... +..++|+.+.. .+ .-|.+.++.....+++|.+++|+|--+
T Consensus 159 ~~~~VNiig~~~-~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~niv~~~~~~~~~a~~L~~r~GiP~~~ 236 (406)
T cd01967 159 TPYDVNIIGEYN-IGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNLVHCSRSMNYLAREMEERYGIPYME 236 (406)
T ss_pred CCCeEEEEeccc-cchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEEEEChHHHHHHHHHHHHhhCCCEEE
Confidence 356788887654 244888888888763 23334444322 22 457777788899999999999999743
No 68
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=56.37 E-value=21 Score=27.01 Aligned_cols=55 Identities=5% Similarity=0.023 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHhhhcccceEEeeCCCC--cEEEEcCChHHHHHHHHhhhcCCCcCceE
Q psy8931 30 GIDLKEFCKLCQHGVAASTCINMVNNA--AQVQVQGNQIVFVHNLLTEKFNIQKRFIR 85 (95)
Q Consensus 30 ~idl~~lak~lkk~~acs~sv~~~~g~--~eI~iQGd~~~~v~~~L~~~~gip~~~I~ 85 (95)
.++.+++|..|....-|++.|....|. +.-.=+...-+++.++|.+ ..+|.+|..
T Consensus 25 ~l~y~~ma~~ladVi~~N~~iis~kGklLGy~~~~~~~~dr~~q~~~~-r~fPdeY~~ 81 (261)
T COG4465 25 PLPYNEMAETLADVIECNAFIISRKGKLLGYSFNYKTNNDRVKQMFED-RKFPDEYTS 81 (261)
T ss_pred cccHHHHHHHHHHHhhcceEEEeCCCceeccccccccchHHHHHHHHH-hcCCHHHHH
Confidence 578999999999999999999987776 5556667778999999996 788887754
No 69
>PRK10560 hofQ outer membrane porin HofQ; Provisional
Probab=56.11 E-value=49 Score=25.97 Aligned_cols=59 Identities=8% Similarity=0.137 Sum_probs=47.3
Q ss_pred cCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCC--hHHHHHHHHhhhcCCCcCceEE
Q psy8931 27 DVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGN--QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 27 e~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd--~~~~v~~~L~~~~gip~~~I~~ 86 (95)
...-.+.+++++.++..+.-.+++.-.+....+.+.|. ..+++.++|.+ ...|.+.|.+
T Consensus 97 ~L~ya~A~el~~~l~~ll~~~g~v~~d~~tNsLiv~~~~~~~~~i~~li~~-lD~~~~QV~I 157 (386)
T PRK10560 97 TLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQ-MDLPVGQVEL 157 (386)
T ss_pred EecCCCHHHHHhhhcccccCCcEEEEEcCCCEEEEEcCHHHHHHHHHHHHH-hCCCCceEEE
Confidence 44457899999999998888888887766688999887 66777778777 8888887765
No 70
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=55.29 E-value=1.4 Score=30.63 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHHHHHhhhcccceEEeeCCCC---------cEEEEcCChHHHHHHHHhhhcC
Q psy8931 34 KEFCKLCQHGVAASTCINMVNNA---------AQVQVQGNQIVFVHNLLTEKFN 78 (95)
Q Consensus 34 ~~lak~lkk~~acs~sv~~~~g~---------~eI~iQGd~~~~v~~~L~~~~g 78 (95)
.+++++|+=-++||-|+.+.+.. .+-+-+|.-.++|.+|++++||
T Consensus 35 ~~l~~~LrCp~Cq~qsi~~s~a~~A~dmR~~I~~~l~~G~s~~eI~~~~v~rYG 88 (148)
T PF03918_consen 35 RELAKELRCPVCQNQSIADSNAPIARDMRREIREMLAEGKSDEEIIDYFVERYG 88 (148)
T ss_dssp HHHHHCCE-TTTTS-CTTT--SHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred HHHHhcccCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 45666666667777777776543 3455789999999999999998
No 71
>PHA00019 IV phage assembly protein
Probab=54.65 E-value=58 Score=25.92 Aligned_cols=58 Identities=10% Similarity=0.232 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHhhhccc----ceEEeeCCCCcEEEEcCC--hHHHHHHHHhhhcCCCcCceEE
Q psy8931 28 VYGIDLKEFCKLCQHGVAA----STCINMVNNAAQVQVQGN--QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 28 ~f~idl~~lak~lkk~~ac----s~sv~~~~g~~eI~iQGd--~~~~v~~~L~~~~gip~~~I~~ 86 (95)
..-.+.+++++.|+..+.. +++|.-.+....+.|+|. ..+.+.++|.. +..|.+.+.+
T Consensus 138 l~y~~a~~l~~~L~~~~~~~~~~~~~v~~d~~tN~Liv~~t~~~~~~i~~lI~~-lD~~~~QV~I 201 (428)
T PHA00019 138 INNVRASDLLPLVKIFVKSNGAPGGSVTDLPGTNSLVVSGSASQLPALADFISA-IDVPRRQVLI 201 (428)
T ss_pred EEeCCHHHHHHHHHHhhcccCCCCeEEEEeCCCCEEEEEeCHHHHHHHHHHHHh-hCCCCcEEEE
Confidence 3356889999999877643 467776666688999987 66778888877 8899988876
No 72
>PRK01310 hypothetical protein; Validated
Probab=54.59 E-value=16 Score=24.09 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=24.3
Q ss_pred EcCChHHHHHHHHhhhcCCCcCceEEcc
Q psy8931 61 VQGNQIVFVHNLLTEKFNIQKRFIRGLE 88 (95)
Q Consensus 61 iQGd~~~~v~~~L~~~~gip~~~I~~~~ 88 (95)
+.|---+.+.+||.+.+|+|+..|+++-
T Consensus 49 v~GkAN~ali~~LA~~l~v~ks~I~iv~ 76 (104)
T PRK01310 49 EGGEANRALIELLAKALGVPKSSVRLLS 76 (104)
T ss_pred CCChHHHHHHHHHHHHhCCChhhEEEEe
Confidence 4577788899999999999999999863
No 73
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=53.89 E-value=20 Score=25.71 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHhhhcccceEEeeCCCC--cEEEEcCChHHHHHHHHhhhcCCCcCceEE
Q psy8931 29 YGIDLKEFCKLCQHGVAASTCINMVNNA--AQVQVQGNQIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 29 f~idl~~lak~lkk~~acs~sv~~~~g~--~eI~iQGd~~~~v~~~L~~~~gip~~~I~~ 86 (95)
..+|..++|..|.....|+.-|....|. +.=...+-.-+.+.+++.+ ..+|+.|.+.
T Consensus 19 ~~v~F~~ia~vL~dvl~aNvyIis~kGkiLGy~~~~~~~~~~~~~~~~~-~~fpe~yn~~ 77 (177)
T PF06018_consen 19 EPVDFNDIAEVLSDVLEANVYIISRKGKILGYSFIDDFECDRMEEMLEE-KRFPEEYNER 77 (177)
T ss_dssp SS--HHHHHHHHHHHHTSEEEEEETTSBEEEEE-SS----HHHHHHHHH-TB--HHHHHH
T ss_pred CCCCHHHHHHHHHHhhcCcEEEEeCCccEEEEeccCCCCcHHHHHHHhc-CcCCHHHHHH
Confidence 4689999999999999999999998887 4444455555667776655 5688876543
No 74
>TIGR00647 MG103 conserved hypothetical protein.
Probab=53.78 E-value=19 Score=27.70 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=36.4
Q ss_pred HHHhhhcccceEEeeCC---CC-cEEEEcC-ChHHHHHHHHhhhcCCCcCceE
Q psy8931 38 KLCQHGVAASTCINMVN---NA-AQVQVQG-NQIVFVHNLLTEKFNIQKRFIR 85 (95)
Q Consensus 38 k~lkk~~acs~sv~~~~---g~-~eI~iQG-d~~~~v~~~L~~~~gip~~~I~ 85 (95)
..|+-.|-|+|||.++. ++ .||.... ++.+.+.++|.. ++++.+.+.
T Consensus 100 aflrGaFL~~GSv~~P~~s~~YHLEi~~~~~~~a~~l~~ll~~-f~~~ak~~~ 151 (279)
T TIGR00647 100 SYMIGAFLSGGSVSDLEHSSNFHLQISSNNEEQIDQLCKLFNE-FKLTSKTLQ 151 (279)
T ss_pred HHHHHHHhCCeecCCCCCCCceeEEEEeCCHHHHHHHHHHHHH-cCccccccc
Confidence 47899999999999866 23 7888877 466778887865 998887655
No 75
>PRK00647 hypothetical protein; Validated
Probab=53.48 E-value=16 Score=23.85 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=24.1
Q ss_pred EcCChHHHHHHHHhhhcCCCcCceEEcc
Q psy8931 61 VQGNQIVFVHNLLTEKFNIQKRFIRGLE 88 (95)
Q Consensus 61 iQGd~~~~v~~~L~~~~gip~~~I~~~~ 88 (95)
+-|---+.+.+||.+.+|+|+..|+++-
T Consensus 38 vdGKAN~ali~~LAk~l~vpks~I~Iv~ 65 (96)
T PRK00647 38 EKGKANDAVIALLAKFLSLPKRDVTLIA 65 (96)
T ss_pred CCChHHHHHHHHHHHHhCCChhhEEEEe
Confidence 3477778899999999999999999863
No 76
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=51.80 E-value=16 Score=23.55 Aligned_cols=21 Identities=5% Similarity=0.165 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhcCCCcCceEE
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~ 86 (95)
...|.++|.+..|+|++.|.+
T Consensus 78 ~~~i~~~l~~~lgi~~~rv~I 98 (116)
T PTZ00397 78 AAAITKILASHLKVKSERVYI 98 (116)
T ss_pred HHHHHHHHHHHhCcCcccEEE
Confidence 456888888999999999987
No 77
>PF04001 Vhr1: Transcription factor Vhr1; InterPro: IPR007147 This is a family of proteins of unknown function found in yeast.
Probab=51.10 E-value=9.2 Score=24.86 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=21.2
Q ss_pred cCChHHHHHHHHhhhcCCCcCceEEc
Q psy8931 62 QGNQIVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 62 QGd~~~~v~~~L~~~~gip~~~I~~~ 87 (95)
|-+...+|+++|..+||+|..+..-.
T Consensus 48 Qd~~I~~iA~iLR~Ef~Yp~~~~~~F 73 (95)
T PF04001_consen 48 QDDNIRQIAEILRTEFGYPESYSSEF 73 (95)
T ss_pred hHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 55778899999999999999876443
No 78
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=50.21 E-value=25 Score=28.34 Aligned_cols=64 Identities=11% Similarity=0.235 Sum_probs=41.3
Q ss_pred CCeeEEEEecccCCCCCHHHHHHHHhhhcccc--------------------------eEEeeC---CCC-cEEEEcCCh
Q psy8931 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHGVAAS--------------------------TCINMV---NNA-AQVQVQGNQ 65 (95)
Q Consensus 16 g~K~vT~V~Gle~f~idl~~lak~lkk~~acs--------------------------~sv~~~---~g~-~eI~iQGd~ 65 (95)
.++.|-+|-|.....-|++++.+-|. .|+-- +++.+. +.+ .-|.+ ++.
T Consensus 167 ~~~~VNiIgg~~~~~~D~~elk~lL~-~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~gg~t~eei~~~~~A~lniv~-~~~ 244 (455)
T PRK14476 167 RPRQVNVLPGSHLTPGDIEELREIIE-AFGLEPIILPDLSGSLDGHLPDDWTPTTLGGTTLEEIRELGRSAATIAI-GES 244 (455)
T ss_pred CCCcEEEECCCCCCcccHHHHHHHHH-HcCCceEEecCccccccCCCCCcccccCCCCCCHHHHHhhccCcEEEEe-cHH
Confidence 45678888765444568887777663 33322 233321 222 45555 788
Q ss_pred HHHHHHHHhhhcCCCc
Q psy8931 66 IVFVHNLLTEKFNIQK 81 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~ 81 (95)
....+++|.++||+|-
T Consensus 245 ~~~~a~~Lee~~GiP~ 260 (455)
T PRK14476 245 MRKAAEALEARTGVPY 260 (455)
T ss_pred HHHHHHHHHHHhCCCe
Confidence 8899999999999994
No 79
>PRK01530 hypothetical protein; Reviewed
Probab=49.84 E-value=19 Score=23.79 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.1
Q ss_pred EcCChHHHHHHHHhhhcCCCcCceEEcc
Q psy8931 61 VQGNQIVFVHNLLTEKFNIQKRFIRGLE 88 (95)
Q Consensus 61 iQGd~~~~v~~~L~~~~gip~~~I~~~~ 88 (95)
+-|---+.+.+||.+.+|+|+..|+++.
T Consensus 50 vdGkAN~ali~~LAk~l~v~ks~I~Ivs 77 (105)
T PRK01530 50 EQGKANEEIINYLAKEWKLSRSNIEIIK 77 (105)
T ss_pred CCChHHHHHHHHHHHHhCCChhhEEEEe
Confidence 3577778899999999999999999853
No 80
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=47.09 E-value=28 Score=27.64 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=40.7
Q ss_pred CCeeEEEEecccCCCCCHHHHHHHHhhhcccceEE-------------------------eeC---CCC-cEEEEcCChH
Q psy8931 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCI-------------------------NMV---NNA-AQVQVQGNQI 66 (95)
Q Consensus 16 g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv-------------------------~~~---~g~-~eI~iQGd~~ 66 (95)
..+.|-++-|+..+.-|+.++...|.. |+.-..+ .+. +.. .-|.+.-...
T Consensus 159 ~~~~VNli~~~~~~~d~~~el~~lL~~-~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~~i~~~~~A~~niv~~~~~~ 237 (435)
T cd01974 159 KNGKLNIIPGFDTYAGNMREIKRLLEL-MGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEELKDAGNAKATLALQEYAT 237 (435)
T ss_pred CCCeEEEECCCCCCcchHHHHHHHHHH-cCCCEEEecccccccCCCCCCCccccCCCCCHHHHHhhccCcEEEEECcccc
Confidence 356788888777654348888777775 4433322 211 111 3455554466
Q ss_pred HHHHHHHhhhcCCC
Q psy8931 67 VFVHNLLTEKFNIQ 80 (95)
Q Consensus 67 ~~v~~~L~~~~gip 80 (95)
...+++|.++||+|
T Consensus 238 ~~~a~~Le~~~giP 251 (435)
T cd01974 238 EKTAKFLEKKCKVP 251 (435)
T ss_pred HHHHHHHHHHhCCC
Confidence 78999999999999
No 81
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=45.79 E-value=36 Score=27.20 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=40.2
Q ss_pred CeeEEEEecccCCCCCHHHHHHHHhhh----------------------c----ccceEEee---CCCC-cEEEEcCChH
Q psy8931 17 NKKVTLVNNLDVYGIDLKEFCKLCQHG----------------------V----AASTCINM---VNNA-AQVQVQGNQI 66 (95)
Q Consensus 17 ~K~vT~V~Gle~f~idl~~lak~lkk~----------------------~----acs~sv~~---~~g~-~eI~iQGd~~ 66 (95)
+..|-++-|.....-|+.++-+-|... | .+++|+.+ .+.+ .-|.+ ++..
T Consensus 167 ~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~~l~d~s~~ld~~~~~~~~~~~~~gg~t~eei~~~~~A~lniv~-~~~~ 245 (432)
T TIGR01285 167 NRRVNLLVGSLLTPGDIEELRRMVEAFGLKPIILPDLSRSLDGHLADDDFSPITQGGTTLEQIRQIGQSCCTLAI-GESM 245 (432)
T ss_pred CCeEEEEcCCCCCccCHHHHHHHHHHcCCceEEecccccccCCCCCCCccceeCCCCCcHHHHHhhccCcEEEEE-ChhH
Confidence 457888866543235777776666531 1 22333333 2223 44555 7888
Q ss_pred HHHHHHHhhhcCCCcC
Q psy8931 67 VFVHNLLTEKFNIQKR 82 (95)
Q Consensus 67 ~~v~~~L~~~~gip~~ 82 (95)
..++++|.++||+|--
T Consensus 246 ~~~a~~Lee~~giP~~ 261 (432)
T TIGR01285 246 RRAASLLADRCGVPYI 261 (432)
T ss_pred HHHHHHHHHHHCCCeE
Confidence 8999999999999953
No 82
>PRK04158 transcriptional repressor CodY; Validated
Probab=45.44 E-value=51 Score=25.16 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHhhhcccceEEeeCCCC--cEEEEcCChHHHHHHHHhhhcCCCcCceE
Q psy8931 29 YGIDLKEFCKLCQHGVAASTCINMVNNA--AQVQVQGNQIVFVHNLLTEKFNIQKRFIR 85 (95)
Q Consensus 29 f~idl~~lak~lkk~~acs~sv~~~~g~--~eI~iQGd~~~~v~~~L~~~~gip~~~I~ 85 (95)
..+|+.++|..|.....|+.-|....|. +-=..++-.-+.+.+++.+ -.+|..|.+
T Consensus 21 ~~v~f~~~a~~L~~~l~~nvyii~~~GkiLGy~~~~~~~~~~i~~~~~~-~~fp~~~~~ 78 (256)
T PRK04158 21 EPVDFNEMAEVLSDVIDCNVYIVSRKGKILGYSMKEKIENDRVEQMLEE-RQFPEEYNE 78 (256)
T ss_pred CCCCHHHHHHHHHHhhCCCEEEEeCCCcEEEEeccccCccHHHHHHHHc-CcCCHHHHH
Confidence 3689999999999999999999987776 3333455444467776664 567766554
No 83
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=45.12 E-value=1.2e+02 Score=22.35 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=40.3
Q ss_pred CccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcC-----ChHHHHHHHHhhhcC
Q psy8931 4 LKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQG-----NQIVFVHNLLTEKFN 78 (95)
Q Consensus 4 ~~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQG-----d~~~~v~~~L~~~~g 78 (95)
.++|.|+ |+...+++ |+. ..|++++..+|..+++-+...-.. ....|.+.+ .....+.++|.+ +|
T Consensus 8 ~~~~~lK-----g~~~~~~~--L~~-~~~~~~l~~~L~~kl~~a~~FF~~-apvvld~~~~~~~~~~~~~L~~~l~~-~g 77 (239)
T PRK05177 8 RPPIRLR-----GRSFLAVV--LSP-EAPLDDWLARLDALIARSPGFFLG-RPVVLDLAGLAIERSQLAALLAELEA-RG 77 (239)
T ss_pred CCcEEEE-----CCceEEEE--EeC-CCCHHHHHHHHHHHHHhChhhhCC-CeEEEEeCCCCCCHHHHHHHHHHHHH-CC
Confidence 3555554 44444444 444 579999999999999777533321 113444544 245667777776 77
Q ss_pred CC
Q psy8931 79 IQ 80 (95)
Q Consensus 79 ip 80 (95)
+.
T Consensus 78 l~ 79 (239)
T PRK05177 78 IR 79 (239)
T ss_pred CE
Confidence 63
No 84
>PRK13568 hofQ putative outer membrane porin HofQ; Provisional
Probab=44.61 E-value=93 Score=24.41 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHhh----hcccceEEeeCCCCcEEEEcCC--hHHHHHHHHhhhcCCCcCceEE
Q psy8931 30 GIDLKEFCKLCQH----GVAASTCINMVNNAAQVQVQGN--QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 30 ~idl~~lak~lkk----~~acs~sv~~~~g~~eI~iQGd--~~~~v~~~L~~~~gip~~~I~~ 86 (95)
-.+.+++++.|+. .++-.++|.-.+....+.|.+. ..+.+.++|.+ +..|.+.+.+
T Consensus 91 ya~a~~v~~~L~~~~~~~ls~~g~v~~d~~tNsLiV~~~~~~~~~i~~lI~~-lD~p~~QV~I 152 (381)
T PRK13568 91 YADAEEVADSLQSQRGGLLSPRGSVTADKRTNTLLIRDTPAALAQLKNWLIE-LDLPLQQVQL 152 (381)
T ss_pred CCcHHHHHHHHhhccccccCCCceEEEeCCCCEEEEEeCHHHHHHHHHHHHH-hCCCCcEEEE
Confidence 4688999999976 3444567776666689999987 56677777777 8999887754
No 85
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=43.83 E-value=84 Score=19.96 Aligned_cols=41 Identities=10% Similarity=0.218 Sum_probs=26.6
Q ss_pred EEeeC-CCCcEEEEcCC-------h-HHHHHHHHhhhcCCCcCceEEcccc
Q psy8931 49 CINMV-NNAAQVQVQGN-------Q-IVFVHNLLTEKFNIQKRFIRGLELA 90 (95)
Q Consensus 49 sv~~~-~g~~eI~iQGd-------~-~~~v~~~L~~~~gip~~~I~~~~~~ 90 (95)
++.+. ++.-+|.|++. + ..-|.++|.+ +|++.-.|.+.|+.
T Consensus 19 ~v~p~~~~gi~i~l~S~v~~~fg~~i~~vi~~~l~~-~~i~~~~v~i~D~G 68 (87)
T PF06857_consen 19 TVEPAESGGIEIELESSVVKQFGDQIRAVIRETLEE-LGIEDAKVEINDKG 68 (87)
T ss_pred EEEeCCCCcEEEEEEchHHhhhHHHHHHHHHHHHHh-cCCCceEEEEEeCC
Confidence 45554 23378888866 3 3334445555 99999999988763
No 86
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=43.21 E-value=39 Score=26.64 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=40.5
Q ss_pred CCeeEEEEecccCCCCCHHHHHHHHhhhcccce--------EEeeC---CCC-cEEEEcCChHHHHHHHHhhhcCCCcC
Q psy8931 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHGVAAST--------CINMV---NNA-AQVQVQGNQIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 16 g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~--------sv~~~---~g~-~eI~iQGd~~~~v~~~L~~~~gip~~ 82 (95)
.++.|.++-++. ..-|++++.+.|+. |+.-. |+.+. +.. .-|.+.++.....+++|.++||+|--
T Consensus 161 ~~~~VNliG~~~-~~~d~~ei~~lL~~-~Gl~v~~~~~~~~t~~ei~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~ 237 (415)
T cd01977 161 SDYTINYIGDYN-IQGDTEVLQKYFER-MGIQVLSTFTGNGTYDDLRWMHRAKLNVVNCARSAGYIANELKKRYGIPRL 237 (415)
T ss_pred CCCcEEEEccCC-CcccHHHHHHHHHH-cCCeEEEEECCCCCHHHHHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 357899994443 45577777666653 33332 22221 112 34556667788899999999999943
No 87
>PTZ00423 glideosome-associated protein 45; Provisional
Probab=42.95 E-value=18 Score=25.96 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=16.7
Q ss_pred CCCCC-HHHHHHHHhhhcccce
Q psy8931 28 VYGID-LKEFCKLCQHGVAAST 48 (95)
Q Consensus 28 ~f~id-l~~lak~lkk~~acs~ 48 (95)
.|+.+ +++.|+.|.++|+|+-
T Consensus 148 PcDM~k~DEtAk~~s~RCGcdL 169 (193)
T PTZ00423 148 PCDMNKLDETAKVFSRRCGCDL 169 (193)
T ss_pred ccchhhHHHHHHHHHHhhCCCC
Confidence 45443 7899999999999974
No 88
>PF05005 Ocnus: Janus/Ocnus family (Ocnus); InterPro: IPR007702 This family is comprised of the Ocnus, Janus-A and Janus-B proteins. These proteins have been found to be testes specific in Drosophila melanogaster [].; PDB: 2OZX_A 2OZW_A 2NMM_C 2AI6_A 2HW4_A.
Probab=42.00 E-value=62 Score=21.43 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=36.1
Q ss_pred CCCccEEEEEeeecCCeeEEEEeccc--CCCCC-HHHHHHHHhhh-----cccceEEeeCCCCcEEEEcC
Q psy8931 2 GKLKPIDLQVATRSGNKKVTLVNNLD--VYGID-LKEFCKLCQHG-----VAASTCINMVNNAAQVQVQG 63 (95)
Q Consensus 2 G~~~~I~I~~~~R~g~K~vT~V~Gle--~f~id-l~~lak~lkk~-----~acs~sv~~~~g~~eI~iQG 63 (95)
|....|.|++.-..+...-++|+|.. .|..| ++++.++|.+. |=.||-+.-.+....|.|=|
T Consensus 13 G~fKYvLi~v~~~~~~~~k~iVRG~~~~~yH~di~d~~~~el~~~gl~~~clGGGrI~hd~~~k~I~VYG 82 (108)
T PF05005_consen 13 GVFKYVLIRVTDHGSGESKYIVRGYKRAEYHADIYDEVQEELEKLGLCTECLGGGRIEHDPDKKKIKVYG 82 (108)
T ss_dssp SEEEEEEEEEES-G---EEEEEEEETT-SSHHHHHHHHHHHHHHCTEEEEEEEEEEEEEETTTTEEEEES
T ss_pred ceEEEEEEEEEeCCCCEEEEEEECCcchhhHHHHHHHHHHHHHHcCCeEEEeCCcEEEeCCCCCEEEEEE
Confidence 44567777777766788899999997 44445 56677777662 22233444344445666644
No 89
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=40.23 E-value=35 Score=20.67 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=18.7
Q ss_pred hHHHHHHHHhhhcCCCcCceEEc
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~~ 87 (95)
-...|.+||.. .|||.+.|.+.
T Consensus 55 RA~~V~~~L~~-~gi~~~ri~~~ 76 (97)
T PF00691_consen 55 RAEAVKQYLVE-NGIPPERISVV 76 (97)
T ss_dssp HHHHHHHHHHH-TTSSGGGEEEE
T ss_pred HHHHHHHHHHH-cCCChHhEEEE
Confidence 45689999999 99999999764
No 90
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=39.87 E-value=24 Score=21.24 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=34.9
Q ss_pred CHHHHHHHHhhhcccceEEe--eCCCC--cEEEEcCC-hHHHHHHHHhhhcCCCcC
Q psy8931 32 DLKEFCKLCQHGVAASTCIN--MVNNA--AQVQVQGN-QIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 32 dl~~lak~lkk~~acs~sv~--~~~g~--~eI~iQGd-~~~~v~~~L~~~~gip~~ 82 (95)
|...|...|++.+.+--|+. -.+.+ ..|..+|+ |.+-+.+-|.++||+..+
T Consensus 17 d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~ 72 (75)
T PF14492_consen 17 DEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVE 72 (75)
T ss_dssp HHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEE
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeE
Confidence 67788888888887764433 33344 45555677 777788888888998754
No 91
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=39.57 E-value=32 Score=30.30 Aligned_cols=64 Identities=17% Similarity=0.313 Sum_probs=41.7
Q ss_pred CeeEEEEecccCCCCCHHHHHHHHhhhcccc--------------------------eEEeeC---CCC-cEEEEcCChH
Q psy8931 17 NKKVTLVNNLDVYGIDLKEFCKLCQHGVAAS--------------------------TCINMV---NNA-AQVQVQGNQI 66 (95)
Q Consensus 17 ~K~vT~V~Gle~f~idl~~lak~lkk~~acs--------------------------~sv~~~---~g~-~eI~iQGd~~ 66 (95)
...|.++.|...+.-|++++...|.. |+-- +++.+. +.+ .-|.+ |+..
T Consensus 644 ~~~VNli~~~~~~~gD~~eik~lL~~-~Gl~v~~vpd~s~~ldg~~~~~~~~~~~ggt~~eei~~~~~A~~niv~-~~~~ 721 (917)
T PRK14477 644 PGQVNILPGAHLTPADVEEIKEIVEA-FGLDPVVVPDISNALDGHIDETVSPLSTGGTTVEDIRAAGRSAATLAV-GDSL 721 (917)
T ss_pred CCcEEEeCCCCCChhhHHHHHHHHHH-cCCceEEecCccccccCCCCCCccccCCCCCcHHHHHHhhhCcEEEEE-cHhH
Confidence 46788997765545587777666653 2222 233321 222 45666 8888
Q ss_pred HHHHHHHhhhcCCCcC
Q psy8931 67 VFVHNLLTEKFNIQKR 82 (95)
Q Consensus 67 ~~v~~~L~~~~gip~~ 82 (95)
..++++|.++||+|--
T Consensus 722 ~~~A~~Leek~GiP~~ 737 (917)
T PRK14477 722 ARAAEKLQERFGIPAY 737 (917)
T ss_pred HHHHHHHHHHHCCCee
Confidence 8999999999999953
No 92
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=39.44 E-value=34 Score=18.37 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=20.4
Q ss_pred cEEEEcCC-hHHHHHHHHhhhcCCCcC
Q psy8931 57 AQVQVQGN-QIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 57 ~eI~iQGd-~~~~v~~~L~~~~gip~~ 82 (95)
+.+.+.|. +...|.++|.+ ++||.-
T Consensus 10 d~~~~~g~~~~k~lkk~~~e-~kiP~~ 35 (47)
T TIGR02433 10 DRIKLLGRKGSKKLKKLFID-AKVPPW 35 (47)
T ss_pred CEEEECCCCCCchHHHHHHH-cCCCHH
Confidence 57788776 67889999998 999864
No 93
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=39.00 E-value=94 Score=19.19 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.4
Q ss_pred cCChHHHHHHHHhhhcCCCcCceEE
Q psy8931 62 QGNQIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 62 QGd~~~~v~~~L~~~~gip~~~I~~ 86 (95)
.|.-.+++.+.|.+.++++...|++
T Consensus 48 ~G~~i~~L~~~L~k~~~~~~~~i~v 72 (81)
T cd02413 48 KGRRIRELTSLVQKRFNFPEGSVEL 72 (81)
T ss_pred CchhHHHHHHHHHHHhCCCCCeEEE
Confidence 4778889999999999999999998
No 94
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=37.32 E-value=78 Score=17.71 Aligned_cols=34 Identities=6% Similarity=0.018 Sum_probs=21.5
Q ss_pred HHHhhhcccceEEeeCCC-CcEEEEcCChHHHHHHH
Q psy8931 38 KLCQHGVAASTCINMVNN-AAQVQVQGNQIVFVHNL 72 (95)
Q Consensus 38 k~lkk~~acs~sv~~~~g-~~eI~iQGd~~~~v~~~ 72 (95)
+.|+..++|.-.+.+... ...|.|.|+ .+.|...
T Consensus 23 ~~i~~~~g~~I~i~~~~~~~~~v~I~G~-~~~v~~A 57 (62)
T cd02394 23 RKIMEETGVKIRFPDPGSKSDTITITGP-KENVEKA 57 (62)
T ss_pred HHHHHHhCCEEEcCCCCCCCCEEEEEcC-HHHHHHH
Confidence 455666677666655332 289999999 4555543
No 95
>smart00649 RL11 Ribosomal protein L11/L12.
Probab=37.19 E-value=83 Score=21.36 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=36.0
Q ss_pred ccCCCCCHHHHHHHHhhhcccc-eEEeeCCCCcEEEEcCCh-------HHHHHHHHhhhcCCCcC
Q psy8931 26 LDVYGIDLKEFCKLCQHGVAAS-TCINMVNNAAQVQVQGNQ-------IVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 26 le~f~idl~~lak~lkk~~acs-~sv~~~~g~~eI~iQGd~-------~~~v~~~L~~~~gip~~ 82 (95)
|-.+|+++.+|+++|-.+.+-= +...+ .+|.++.|. ...+..||.+..|+++.
T Consensus 20 LG~~Gini~~f~k~fN~~T~~~~g~~vp----V~I~v~~dksf~~~v~~P~~s~ll~k~~g~~kg 80 (132)
T smart00649 20 LGQLGINIMEFCKEFNARTKDKKGLPIP----VKITVYNDKSFTFIIKTPPASFLLKKAAGIEKG 80 (132)
T ss_pred cccCCCCHHHHHHHHHHHHhhcCCCeEe----EEEEEeCCCeEEEEEcCCCHHHHHHHHhCCCCC
Confidence 6678999999999998776631 11112 678888884 44556677776777644
No 96
>KOG2872|consensus
Probab=36.40 E-value=75 Score=25.20 Aligned_cols=29 Identities=31% Similarity=0.584 Sum_probs=18.4
Q ss_pred cEEEEcCChHH------------HHHHHHhhhcCCCcCceEEc
Q psy8931 57 AQVQVQGNQIV------------FVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 57 ~eI~iQGd~~~------------~v~~~L~~~~gip~~~I~~~ 87 (95)
.+|.+|||... .+.+.+. .+| |..||--+
T Consensus 293 ~~VtlQGNlDP~~ly~s~e~it~~v~~mv~-~fG-~~ryI~NL 333 (359)
T KOG2872|consen 293 NRVTLQGNLDPGVLYGSKEEITQLVKQMVK-DFG-KSRYIANL 333 (359)
T ss_pred CceEEecCCChHHhcCCHHHHHHHHHHHHH-HhC-ccceEEec
Confidence 57999999643 2333333 388 88887654
No 97
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=36.29 E-value=1.7e+02 Score=21.28 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=22.3
Q ss_pred CCeeEEEEecc----cCCCCCHHHHHHHHhhhc
Q psy8931 16 GNKKVTLVNNL----DVYGIDLKEFCKLCQHGV 44 (95)
Q Consensus 16 g~K~vT~V~Gl----e~f~idl~~lak~lkk~~ 44 (95)
++|.|..+.|- ..|+ ||-++|+.+...-
T Consensus 14 ~G~~V~~~~g~~~~~~~~~-dp~~~a~~~~~~g 45 (241)
T PRK14024 14 DGQAVRLVQGEAGSETSYG-SPLDAALAWQRDG 45 (241)
T ss_pred CCEEEEeecccccCceECC-CHHHHHHHHHHCC
Confidence 55899999886 5566 9999999998743
No 98
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=36.24 E-value=59 Score=25.98 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=40.1
Q ss_pred CeeEEEEecccCCCCCHHHHHHHHhhhccc--------ceEEee---CCCC-cEEEEcCChHHHHHHHHhhhcCCCc
Q psy8931 17 NKKVTLVNNLDVYGIDLKEFCKLCQHGVAA--------STCINM---VNNA-AQVQVQGNQIVFVHNLLTEKFNIQK 81 (95)
Q Consensus 17 ~K~vT~V~Gle~f~idl~~lak~lkk~~ac--------s~sv~~---~~g~-~eI~iQGd~~~~v~~~L~~~~gip~ 81 (95)
++.|.++-+... .-|++++.+.|.. |+- ++|+.+ .+.. .-|.+.++.....+++|.++||+|-
T Consensus 191 ~~~VNiig~~~~-~~d~~el~~lL~~-~Gl~v~~~~~~~~t~eei~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~ 265 (443)
T TIGR01862 191 EYDVNIIGEYNI-GGDAWVMRIYLEE-MGIQVVATFTGDGTYDEIRLMHKAKLNLVHCARSANYIANELEERYGIPW 265 (443)
T ss_pred CCeEEEEccCcC-cccHHHHHHHHHH-cCCeEEEEECCCCCHHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCCe
Confidence 567888876553 4577777666664 332 223322 1222 4555666677889999999999993
No 99
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=36.02 E-value=90 Score=20.26 Aligned_cols=42 Identities=5% Similarity=0.156 Sum_probs=26.7
Q ss_pred EEeeC-CCCcEEEEc-------CChHHHHHHHHhhhcCCCcCceEEcccc
Q psy8931 49 CINMV-NNAAQVQVQ-------GNQIVFVHNLLTEKFNIQKRFIRGLELA 90 (95)
Q Consensus 49 sv~~~-~g~~eI~iQ-------Gd~~~~v~~~L~~~~gip~~~I~~~~~~ 90 (95)
+|.|. ++.-+|.|. |++...+..--++++||..-.|.+.|+.
T Consensus 20 ~v~P~~~~gi~iel~S~V~kQfG~~Ir~~v~etL~~lgV~~~~v~v~DkG 69 (92)
T TIGR01608 20 MVEPAMQVGIEIDLVSDVKKQFGDDIESTVKETLKLLGVENAVVKVVDKG 69 (92)
T ss_pred EEEeCCCCcEEEEEEEHHHHHHhHHHHHHHHHHHHHcCCceEEEEEEeCC
Confidence 45553 333677776 5555554444344599999999998864
No 100
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=35.93 E-value=58 Score=22.88 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=36.5
Q ss_pred EEEeccc----CCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCCh-HHHHHHHHhh
Q psy8931 21 TLVNNLD----VYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQ-IVFVHNLLTE 75 (95)
Q Consensus 21 T~V~Gle----~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~-~~~v~~~L~~ 75 (95)
|++.++. .-.-||+-+++.|++.+++++++.+. ....+||-. ...|.+.|..
T Consensus 44 Ti~~Nf~dia~~l~rDp~h~~k~l~kel~t~g~~d~~---~rlvl~g~f~~~~i~~~i~~ 100 (151)
T COG1601 44 TIIRNFGDIAEALNRDPEHLVKFLKKELGTAGSIDGK---GRLVLQGKFSDSEIVNEIER 100 (151)
T ss_pred hHHHhHHHHHHHhcCCHHHHHHHHHHHhccccccCCc---ceEEEEecccHHHHHHHHHH
Confidence 5555543 22568999999999999999999853 578888874 4444444443
No 101
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.60 E-value=39 Score=26.86 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=41.7
Q ss_pred CCeeEEEEecccCCCCCHHHHHHHHhhhcccce--------------------------EEee---CCCC-cEEEEcCCh
Q psy8931 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHGVAAST--------------------------CINM---VNNA-AQVQVQGNQ 65 (95)
Q Consensus 16 g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~--------------------------sv~~---~~g~-~eI~iQGd~ 65 (95)
.++.|-++-|.....-|++++.+.|. .|+.-. ++.+ .+.+ .-|.+ |+.
T Consensus 156 ~~~~VNiig~~~~~~~D~~eik~lL~-~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~ggt~leei~~~~~A~lniv~-~~~ 233 (417)
T cd01966 156 DPRQVNLLPGAHLTPGDVEELKDIIE-AFGLEPIILPDLSGSLDGHLADDWSPTTTGGTTLEDIRQMGRSAATLAI-GES 233 (417)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH-HcCCceEEecCcccccCCCCCCCccccCCCCCcHHHHHhhccCeEEEEE-CHH
Confidence 45678888766443457777777774 344333 2222 1222 45555 787
Q ss_pred HHHHHHHHhhhcCCCcC
Q psy8931 66 IVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~ 82 (95)
....+++|.++||+|--
T Consensus 234 ~~~~a~~Lee~~GiP~~ 250 (417)
T cd01966 234 MRKAAEALEERTGVPYY 250 (417)
T ss_pred HHHHHHHHHHHHCCCee
Confidence 88999999999999964
No 102
>COG1481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.23 E-value=63 Score=25.31 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=42.3
Q ss_pred CHHHHHHHHhhhcccceEEeeCC-CC--cEEEEcCC-hHHHHHHHHhhhcCCCcCceEE
Q psy8931 32 DLKEFCKLCQHGVAASTCINMVN-NA--AQVQVQGN-QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 32 dl~~lak~lkk~~acs~sv~~~~-g~--~eI~iQGd-~~~~v~~~L~~~~gip~~~I~~ 86 (95)
|....-..|+-.|=++||+.++. +. .||-..+. |...+.++|.. ||+..+-++.
T Consensus 117 ~~~~~~~ylrGAFLagGSis~Pe~~~YhLEi~s~~ee~a~~L~~l~~~-f~l~ak~~er 174 (308)
T COG1481 117 DDEDFRAYLRGAFLAGGSISDPETSSYHLEISSNYEEHALALVKLLRR-FGLNAKIIER 174 (308)
T ss_pred cHHHHHHHHHHHHHcCCccCCCCCCceeEEEecCcHHHHHHHHHHHHH-hccchheeee
Confidence 45566778999999999999865 33 77777775 88888888886 9999887763
No 103
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=34.88 E-value=72 Score=22.71 Aligned_cols=63 Identities=25% Similarity=0.293 Sum_probs=31.0
Q ss_pred CeeEEEEecccCCCCCHHHHHHHHhh-hcccceEEeeCCCCcEEEEcCChHHH---HHHHHhh-hcCCCcCceE
Q psy8931 17 NKKVTLVNNLDVYGIDLKEFCKLCQH-GVAASTCINMVNNAAQVQVQGNQIVF---VHNLLTE-KFNIQKRFIR 85 (95)
Q Consensus 17 ~K~vT~V~Gle~f~idl~~lak~lkk-~~acs~sv~~~~g~~eI~iQGd~~~~---v~~~L~~-~~gip~~~I~ 85 (95)
|..+|+..|++.- ..+++.+.++- ++--.+++.. ++|-|.|-.++. +..+|.+ .+++|-.|.-
T Consensus 91 rq~i~lk~GI~~d--~AKkIvK~IKd~klKVqa~IQg----d~vRVtgKkrDDLQ~viallk~~d~~~pLQF~N 158 (160)
T PF04461_consen 91 RQVIKLKQGIDQD--TAKKIVKLIKDSKLKVQAQIQG----DQVRVTGKKRDDLQEVIALLKEQDLGIPLQFNN 158 (160)
T ss_dssp EEEEEE--S--HH--HHHHHHHHHHHH--SEEEEEET----TEEEEEES-HHHHHHHHHHHHHS--SS--EEEE
T ss_pred EEEEEeecccCHH--HHHHHHHHHHhcCCceeEEecC----cEEEEecCCHHHHHHHHHHHHcccCCCCceecc
Confidence 4567778877741 23444444432 2334556666 788888876655 4556655 6899987754
No 104
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=34.86 E-value=2.3e+02 Score=22.35 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=41.2
Q ss_pred CCeeEEEEecccCCCCCHHHHHHHHhhhcccc--------------------------eEEee---CCCC-cEEEEcCCh
Q psy8931 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHGVAAS--------------------------TCINM---VNNA-AQVQVQGNQ 65 (95)
Q Consensus 16 g~K~vT~V~Gle~f~idl~~lak~lkk~~acs--------------------------~sv~~---~~g~-~eI~iQGd~ 65 (95)
.++.|.++-|.....-|..++...|.. |+-- +++.+ .+.. .-|.+.-..
T Consensus 154 ~~~~VNlig~~~~~~~d~~el~~lL~~-~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~~A~lniv~~~~~ 232 (428)
T cd01965 154 KNGKVNLLPGFPLTPGDVREIKRILEA-FGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNAKATIALGEYS 232 (428)
T ss_pred CCCeEEEECCCCCCccCHHHHHHHHHH-cCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhccCcEEEEEChhh
Confidence 457788988776555577777777663 2222 22221 1222 344444348
Q ss_pred HHHHHHHHhhhcCCCcC
Q psy8931 66 IVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~ 82 (95)
...++++|.++||+|--
T Consensus 233 ~~~~a~~L~e~~GiP~~ 249 (428)
T cd01965 233 GRKAAKALEEKFGVPYI 249 (428)
T ss_pred hHHHHHHHHHHHCCCee
Confidence 88999999999999953
No 105
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=34.83 E-value=38 Score=19.06 Aligned_cols=22 Identities=5% Similarity=-0.007 Sum_probs=16.6
Q ss_pred hHHHHHHHHhhhcCCCcCceEE
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~ 86 (95)
....|.+.|.+.+|+|.+.+.+
T Consensus 20 l~~~it~~l~~~~~~p~~~v~V 41 (62)
T PRK00745 20 LVEEITRVTVETLGCPPESVDI 41 (62)
T ss_pred HHHHHHHHHHHHcCCChhHEEE
Confidence 3455666777789999998886
No 106
>PF03946 Ribosomal_L11_N: Ribosomal protein L11, N-terminal domain; InterPro: IPR020784 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L11 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L11 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacteria, plant chloroplast, red algal chloroplast, cyanelle and archaeabacterial L11; and mammalian, plant and yeast L12 (YL15). L11 is a protein of 140 to 165 amino-acid residues. In E. coli, the C-terminal half of L11 has been shown [] to be in an extended and loosely folded conformation and is likely to be buried within the ribosomal structure.; PDB: 2ZJQ_F 2ZJP_F 3CF5_F 2WRJ_K 2WH4_K 2WRL_K 3FIN_L 2X9U_K 3I8I_L 2XUX_K ....
Probab=33.91 E-value=67 Score=18.95 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=25.0
Q ss_pred ccCCCCCHHHHHHHHhhhccc-c-eEEeeCCCCcEEEEcCCh
Q psy8931 26 LDVYGIDLKEFCKLCQHGVAA-S-TCINMVNNAAQVQVQGNQ 65 (95)
Q Consensus 26 le~f~idl~~lak~lkk~~ac-s-~sv~~~~g~~eI~iQGd~ 65 (95)
|-.+|+++.++.+++-++-+- - +...+ .+|.++.|.
T Consensus 21 LG~~Gin~~~f~k~fN~~T~~~k~G~~v~----V~i~v~~d~ 58 (60)
T PF03946_consen 21 LGPLGINIKKFCKDFNKATKDYKPGIPVP----VKITVYNDK 58 (60)
T ss_dssp HHTTTS-HHHHHHHHHHHTTTCTTSSEEE----EEEEEETTS
T ss_pred cccCCCCHHHHHHHHHHHHhcccCCCEEE----EEEEEeCCC
Confidence 456899999999999988776 1 22222 678887775
No 107
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=32.07 E-value=1.1e+02 Score=23.35 Aligned_cols=57 Identities=4% Similarity=0.035 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHhhhcccceEEeeCCCC--cEEEEcCChHHHHHHHHhhhcCCCcCceE
Q psy8931 28 VYGIDLKEFCKLCQHGVAASTCINMVNNA--AQVQVQGNQIVFVHNLLTEKFNIQKRFIR 85 (95)
Q Consensus 28 ~f~idl~~lak~lkk~~acs~sv~~~~g~--~eI~iQGd~~~~v~~~L~~~~gip~~~I~ 85 (95)
...+|.+++|..|.....|+.-|....|. +.=..++-.-+.+.+++.+ -.+|..|.+
T Consensus 17 ~~~v~f~~ia~~L~~vl~~nvyiis~~GkiLG~~~~~~~~~~~~~~~~~~-~~fp~~y~~ 75 (251)
T TIGR02787 17 QTELPFNEMAEVLADVIDCNAYVISRKGRLLGYSLTYKTNNDRVEQFFQD-RKFPEEYNS 75 (251)
T ss_pred CCCCCHHHHHHHHHHhhcCeEEEEeCCCcEeeeecccccchHHHHHHHHh-CcCCHHHHH
Confidence 34689999999999999999999987665 3333444444556666655 467776654
No 108
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=31.87 E-value=2.3e+02 Score=21.55 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=41.8
Q ss_pred cCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCC-----------CC-cEEEEcCChHHHHHHHHhhhcCCCcC
Q psy8931 15 SGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVN-----------NA-AQVQVQGNQIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 15 ~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~-----------g~-~eI~iQGd~~~~v~~~L~~~~gip~~ 82 (95)
...+.|-++-+.....-|+.++.+.|. .++......... .. .-|.+.-......+++|.++||+|--
T Consensus 150 ~~~~~vNlig~~~~~~~d~~el~~ll~-~~G~~v~~~~~~~~s~~~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p~~ 228 (399)
T cd00316 150 TEPGSVNLIGGYNLGGGDLRELKRLLE-EMGIRVNALFDGGTTVEELRELGNAKLNLVLCRESGLYLARYLEEKYGIPYI 228 (399)
T ss_pred CCCCcEEEECCCCCchhhHHHHHHHHH-HcCCcEEEEcCCCCCHHHHHhhccCcEEEEecHhHHHHHHHHHHHHhCCCeE
Confidence 345678877665543348888888876 444443333221 22 34444434889999999999999853
No 109
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=31.83 E-value=84 Score=25.10 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=40.2
Q ss_pred CeeEEEEecccCCCCCHHHHHHHHhhh-------cccceEEeeC---CCC-cEEEEcCChHHHHHHHHhhhcCCCc
Q psy8931 17 NKKVTLVNNLDVYGIDLKEFCKLCQHG-------VAASTCINMV---NNA-AQVQVQGNQIVFVHNLLTEKFNIQK 81 (95)
Q Consensus 17 ~K~vT~V~Gle~f~idl~~lak~lkk~-------~acs~sv~~~---~g~-~eI~iQGd~~~~v~~~L~~~~gip~ 81 (95)
+..|-++-++.. .-|..++.+.|... +.+++|+.+. +.. .-|.+.......++++|.++||+|-
T Consensus 197 ~~~VNiiG~~~~-~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~ 271 (456)
T TIGR01283 197 VHDINLIGEFNV-AGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIPY 271 (456)
T ss_pred CCcEEEEcCCCC-cccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCCE
Confidence 467888865553 44777777776652 2223333332 222 4555566677889999999999984
No 110
>KOG1546|consensus
Probab=31.69 E-value=41 Score=26.84 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=25.2
Q ss_pred EEEcC--ChHHHHHHHHhhhcCCCcCceEEccc
Q psy8931 59 VQVQG--NQIVFVHNLLTEKFNIQKRFIRGLEL 89 (95)
Q Consensus 59 I~iQG--d~~~~v~~~L~~~~gip~~~I~~~~~ 89 (95)
-+++| |-+.....+|++.|||+.+.|.++-+
T Consensus 78 ~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtD 110 (362)
T KOG1546|consen 78 NELRGCINDVHRMRKLLVERFGFSEDDILMLTD 110 (362)
T ss_pred HHHhhhHHHHHHHHHHHHHhhCCChhheEEEec
Confidence 34566 67788999999999999999998633
No 111
>PF05304 DUF728: Protein of unknown function (DUF728); InterPro: IPR007968 This entry is represented by the Tobacco rattle virus, 16kDa protein; it is a family of uncharacterised viral proteins.
Probab=31.58 E-value=52 Score=21.59 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=20.9
Q ss_pred cEEEEcCCh-------HHHHHHHHhhhcCCCcC
Q psy8931 57 AQVQVQGNQ-------IVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 57 ~eI~iQGd~-------~~~v~~~L~~~~gip~~ 82 (95)
=|+.+||++ +.....+|.+++||.++
T Consensus 7 CEv~~~~~~~TCsm~hANK~~r~~A~~~~v~Rk 39 (103)
T PF05304_consen 7 CEVTVQGNEMTCSMKHANKYNRQLADKVGVKRK 39 (103)
T ss_pred ceEEeeccceeeechhHHHHHHHHHHHhChhhh
Confidence 367777775 78899999999998765
No 112
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=31.33 E-value=22 Score=22.52 Aligned_cols=24 Identities=17% Similarity=-0.049 Sum_probs=2.7
Q ss_pred ChHHHHHHHHhhhcCCCcCceEEc
Q psy8931 64 NQIVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 64 d~~~~v~~~L~~~~gip~~~I~~~ 87 (95)
+.++.+..+|.+.+|+|...|...
T Consensus 4 ~vrq~~i~~L~~~lGy~~~~i~~e 27 (112)
T PF13588_consen 4 DVRQKFIKPLLEELGYPKEDIEVE 27 (112)
T ss_dssp --------------------EEEE
T ss_pred ccccccccccccccccchhhEEEE
Confidence 356778888888899999998763
No 113
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=30.89 E-value=35 Score=23.67 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.1
Q ss_pred ChHHHHHHHHhhhcCCCcCceEE
Q psy8931 64 NQIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 64 d~~~~v~~~L~~~~gip~~~I~~ 86 (95)
....+|.++|.+.||+|++.|.+
T Consensus 164 ~~~~~i~~~la~~~~i~~~~I~V 186 (188)
T PF09581_consen 164 EEEEEIKQYLADFYGISPEQIKV 186 (188)
T ss_pred HHHHHHHHHHHHHhCCCHHHeEE
Confidence 46678999999999999999986
No 114
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=30.67 E-value=40 Score=23.02 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhcccce----EEeeCCCC---------cEEEEcCChHHHHHHHHhhhcC
Q psy8931 33 LKEFCKLCQHGVAAST----CINMVNNA---------AQVQVQGNQIVFVHNLLTEKFN 78 (95)
Q Consensus 33 l~~lak~lkk~~acs~----sv~~~~g~---------~eI~iQGd~~~~v~~~L~~~~g 78 (95)
.+.-+.+|.+.+-|-. |+.++... .+-+-+|+-.++|.+||++.||
T Consensus 30 ~e~r~~~L~~~LRC~vCqnqsiadSna~iA~dmR~~Vr~~i~~G~sd~eI~~~~v~RYG 88 (126)
T PRK10144 30 QQQQALNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKSEVEIIGWMTERYG 88 (126)
T ss_pred HHHHHHHHHHcCCCCCCCCCChhhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 4556666666666653 45554332 4556789999999999999998
No 115
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=30.07 E-value=1.6e+02 Score=21.21 Aligned_cols=57 Identities=9% Similarity=0.073 Sum_probs=36.5
Q ss_pred CHHHHHHHHhhhcccceEEeeCC-CCcEEEEcCChHHHHHHHHhhhcCCCcCceEEcc
Q psy8931 32 DLKEFCKLCQHGVAASTCINMVN-NAAQVQVQGNQIVFVHNLLTEKFNIQKRFIRGLE 88 (95)
Q Consensus 32 dl~~lak~lkk~~acs~sv~~~~-g~~eI~iQGd~~~~v~~~L~~~~gip~~~I~~~~ 88 (95)
+++++...|...|.....+.... ..-||.=.|-..-.-.++|.+.+|++.+.+..+.
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~s~~~~~eI~~~g~sKg~al~~l~~~~gi~~~~v~afG 211 (272)
T PRK15126 154 DLTRLQIQLNEALGERAHLCFSATDCLEVLPVGCNKGAALAVLSQHLGLSLADCMAFG 211 (272)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCcEEEeecCCCChHHHHHHHHHHhCCCHHHeEEec
Confidence 35667777877776444443322 2267777776666666777777999987776543
No 116
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=29.36 E-value=1.1e+02 Score=22.25 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=30.3
Q ss_pred EEEecccCCCC---C-HHHHHHHHhhhcccceEEeeCCCCcEEEEcC-ChHHHHHHHHhh
Q psy8931 21 TLVNNLDVYGI---D-LKEFCKLCQHGVAASTCINMVNNAAQVQVQG-NQIVFVHNLLTE 75 (95)
Q Consensus 21 T~V~Gle~f~i---d-l~~lak~lkk~~acs~sv~~~~g~~eI~iQG-d~~~~v~~~L~~ 75 (95)
-+||||+.|+. | -.++++.|....-.+..+.. .++-+-= +..+.+.+++.+
T Consensus 4 ILvTGF~PF~~~~~NPS~~~~~~L~~~~~~~~~v~~----~~LPV~~~~~~~~l~~~~~~ 59 (211)
T PRK13196 4 LLLTGFEPFHTHPVNPSAQAAQALNGEQAGALRVHS----ALLPVEPRAAMAALSRLLDE 59 (211)
T ss_pred EEEEeecCCCCCCCCcHHHHHHhcccccCCCcEEEE----EEeCCChhHHHHHHHHHHHH
Confidence 37999999975 3 35688888776544444443 3444443 334445555544
No 117
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=29.16 E-value=74 Score=19.84 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=15.2
Q ss_pred cEEEEcCChHHHHHHHH
Q psy8931 57 AQVQVQGNQIVFVHNLL 73 (95)
Q Consensus 57 ~eI~iQGd~~~~v~~~L 73 (95)
+-|+.||...+..++.+
T Consensus 48 GKV~FQG~~Ae~~A~~~ 64 (81)
T PF11858_consen 48 GKVVFQGKNAEQEAAKW 64 (81)
T ss_dssp SEEEEESTTHHHHHHTT
T ss_pred CeEEEECCCHHHHHHHh
Confidence 79999999999888875
No 118
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=28.81 E-value=64 Score=18.03 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhcCCCcCceEE
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~ 86 (95)
...|.+.+.+.+|.|.+.|.+
T Consensus 20 ~~~it~~~~~~lg~~~~~i~V 40 (60)
T PF01361_consen 20 AEAITDAVVEVLGIPPERISV 40 (60)
T ss_dssp HHHHHHHHHHHHTS-GGGEEE
T ss_pred HHHHHHHHHHHhCcCCCeEEE
Confidence 445666777779999999887
No 119
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=28.59 E-value=70 Score=18.19 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhcCCCcCceEE
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~ 86 (95)
.+.|.+.+.+.+|+|.+.|.+
T Consensus 21 ~~~it~a~~~~~~~p~~~v~V 41 (60)
T PRK02289 21 AREVTEVVSRIAKAPKEAIHV 41 (60)
T ss_pred HHHHHHHHHHHhCcCcceEEE
Confidence 344555666678999998887
No 120
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=28.23 E-value=64 Score=19.64 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=17.3
Q ss_pred HHHHHHHhhhcCCCcCceEEcccc
Q psy8931 67 VFVHNLLTEKFNIQKRFIRGLELA 90 (95)
Q Consensus 67 ~~v~~~L~~~~gip~~~I~~~~~~ 90 (95)
.+.+++|..+.++++..+.+.+++
T Consensus 2 ~eFa~~~~r~l~l~p~~VK~~eea 25 (64)
T PF14894_consen 2 REFAEYLERELNLFPGMVKVYEEA 25 (64)
T ss_dssp HHHHHHHHH---HSTTTEEEETTT
T ss_pred hHHHHHHHHhcccCccceEEeccC
Confidence 467889998899999999887765
No 121
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=28.19 E-value=1.6e+02 Score=25.61 Aligned_cols=52 Identities=4% Similarity=0.101 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCcCceEEcc
Q psy8931 33 LKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKRFIRGLE 88 (95)
Q Consensus 33 l~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~~~I~~~~ 88 (95)
.++|+..+...+.---.=.. ..+++|++.-..+.++|..++|++...+..++
T Consensus 244 a~dL~~~~e~~L~~R~~G~~----VRle~~~~~p~~l~~~L~~~l~l~~~dvy~~~ 295 (696)
T COG0855 244 AEDLLEALEQELKRRRTGEP----VRLEIQDDMPEALREFLLQELGLSENDVYVVG 295 (696)
T ss_pred HHHHHHHHHHHHHhcccCCc----EEEEEcccCCHHHHHHHHHHcCCCccceEeec
Confidence 45566655544432211111 57889999999999999999999998887654
No 122
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=28.17 E-value=1.1e+02 Score=22.28 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=30.1
Q ss_pred EEEecccCCCC---CH-HHHHHHHhhhcccceEEeeCCCCcEEEEc-CChHHHHHHHHhh
Q psy8931 21 TLVNNLDVYGI---DL-KEFCKLCQHGVAASTCINMVNNAAQVQVQ-GNQIVFVHNLLTE 75 (95)
Q Consensus 21 T~V~Gle~f~i---dl-~~lak~lkk~~acs~sv~~~~g~~eI~iQ-Gd~~~~v~~~L~~ 75 (95)
-+|+||+.|+- |+ .++++.|....-++..+.. .++-+- .+..+.+.++|.+
T Consensus 4 ILvTGF~PF~~~~~NPS~~~~~~L~~~~~~~~~i~~----~~lPV~y~~~~~~l~~~l~~ 59 (215)
T PRK13197 4 ILVTGFDPFGGEKINPSWEAVKQLPGKEIGGAEIIK----RQLPTVFGKSAEVLKEAIEE 59 (215)
T ss_pred EEEeeccCCCCCCCCcHHHHHHHccccccCCcEEEE----EEECCChHHHHHHHHHHHHH
Confidence 57999999964 33 5688888775544444443 333333 3444555566654
No 123
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=28.17 E-value=1.9e+02 Score=19.53 Aligned_cols=59 Identities=12% Similarity=-0.006 Sum_probs=40.1
Q ss_pred CCHHHHHHHHhhhcccceEEe-eCCCCcEEEEcCChHHHHHHHHhhhcCCCcCceEEccc
Q psy8931 31 IDLKEFCKLCQHGVAASTCIN-MVNNAAQVQVQGNQIVFVHNLLTEKFNIQKRFIRGLEL 89 (95)
Q Consensus 31 idl~~lak~lkk~~acs~sv~-~~~g~~eI~iQGd~~~~v~~~L~~~~gip~~~I~~~~~ 89 (95)
-++..+...|.+.+..-..+. ..+..-+|.-+|-.--.-.++|.+.+|++.+.+..+.+
T Consensus 151 ~~~~~l~~~l~~~~~~~~~~~~~~~~~lei~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD 210 (254)
T PF08282_consen 151 EDLEQLREELKKKFPNLIDVVRSSPYFLEITPKGVSKGSAIKYLLEYLGISPEDIIAFGD 210 (254)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEETTEEEEEETTSSHHHHHHHHHHHHTTSGGGEEEEES
T ss_pred hhhhhhhhhhccccCcceeEEEecccceEEeeCCCCHHHHHHHHhhhcccccceeEEeec
Confidence 357788888999987653333 23333677777766666666666779999888776543
No 124
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=28.16 E-value=47 Score=20.63 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=18.8
Q ss_pred hHHHHHHHHhhhcCCCcCceEEcc
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRGLE 88 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~~~ 88 (95)
-...|.++|.+ .|+|+..|.+..
T Consensus 56 RA~~V~~~L~~-~gi~~~ri~~~g 78 (104)
T TIGR02802 56 RANAVKDYLQA-KGVSASQIETVS 78 (104)
T ss_pred HHHHHHHHHHH-cCCCHHHeEEEe
Confidence 35678999998 899999998753
No 125
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=27.83 E-value=2.2e+02 Score=20.07 Aligned_cols=40 Identities=23% Similarity=0.089 Sum_probs=27.6
Q ss_pred CCeeEEEEecc-cCC---CCCHHHHHHHHhhhcccceEEeeCCC
Q psy8931 16 GNKKVTLVNNL-DVY---GIDLKEFCKLCQHGVAASTCINMVNN 55 (95)
Q Consensus 16 g~K~vT~V~Gl-e~f---~idl~~lak~lkk~~acs~sv~~~~g 55 (95)
+++.|..++|- +.| +.||.++|+.+...-+..-.+.+.++
T Consensus 9 ~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~ 52 (230)
T TIGR00007 9 DGKCVRLYQGDYDKETVYGDDPVEAAKKWEEEGAERIHVVDLDG 52 (230)
T ss_pred CCEEEEeeccccCcceEecCCHHHHHHHHHHcCCCEEEEEeCCc
Confidence 55888888774 333 67999999999555444556666443
No 126
>PF13014 KH_3: KH domain
Probab=27.63 E-value=88 Score=16.41 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=17.9
Q ss_pred HHHHhhhcccceEEee--CCC-C-cEEEEcC
Q psy8931 37 CKLCQHGVAASTCINM--VNN-A-AQVQVQG 63 (95)
Q Consensus 37 ak~lkk~~acs~sv~~--~~g-~-~eI~iQG 63 (95)
-++|+..+.|.-.+.+ .++ . .+|.|.|
T Consensus 13 I~~I~~~tg~~I~i~~~~~~~~~~~~v~I~G 43 (43)
T PF13014_consen 13 IKEIREETGAKIQIPPENEPGSNERVVTITG 43 (43)
T ss_pred HHHHHHHhCcEEEECCccCCCCCceEEEEEC
Confidence 4667777888877776 122 2 7888876
No 127
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=27.26 E-value=1.1e+02 Score=24.22 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=38.2
Q ss_pred CeeEEEEecccCCCCCHHHHHHHHhhh-------cccceEEeeC---CCC-cEEEEcCChHHHHHHHHhhhcCCCcC
Q psy8931 17 NKKVTLVNNLDVYGIDLKEFCKLCQHG-------VAASTCINMV---NNA-AQVQVQGNQIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 17 ~K~vT~V~Gle~f~idl~~lak~lkk~-------~acs~sv~~~---~g~-~eI~iQGd~~~~v~~~L~~~~gip~~ 82 (95)
+..|-+|-++. +.-|..++.+.|... |..++|+.+. +.+ .-|.+.......++++|.++||+|--
T Consensus 172 ~~~VNiiG~~~-~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~ 247 (421)
T cd01976 172 PYDVNIIGDYN-IGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWM 247 (421)
T ss_pred CCeEEEEecCC-CCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEE
Confidence 46788886554 345777766655532 2223333321 222 44555445556789999999999953
No 128
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=27.18 E-value=69 Score=17.87 Aligned_cols=20 Identities=10% Similarity=-0.012 Sum_probs=14.0
Q ss_pred HHHHHHHhhhcCCCcCceEE
Q psy8931 67 VFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 67 ~~v~~~L~~~~gip~~~I~~ 86 (95)
..|.+.|.+.+|+|++.|.+
T Consensus 22 ~~it~~l~~~~~~p~~~v~V 41 (61)
T PRK02220 22 KDVTAAVSKNTGAPAEHIHV 41 (61)
T ss_pred HHHHHHHHHHhCcChhhEEE
Confidence 44555566678888888876
No 129
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=26.96 E-value=37 Score=24.26 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=31.1
Q ss_pred EEeeecCCeeEEEEeccc------CCCCCHHHHHHHHhhhcccceEEeeCCC
Q psy8931 10 QVATRSGNKKVTLVNNLD------VYGIDLKEFCKLCQHGVAASTCINMVNN 55 (95)
Q Consensus 10 ~~~~R~g~K~vT~V~Gle------~f~idl~~lak~lkk~~acs~sv~~~~g 55 (95)
.++--.||-+|-.. |++ .-|.|..++|.+|+..|..++.....|.
T Consensus 81 ~v~D~Agn~hVLCa-GIDLNPAi~aQG~da~~iA~~lK~~Cv~~gG~a~iP~ 131 (178)
T PF12268_consen 81 KVKDLAGNNHVLCA-GIDLNPAIDAQGGDALSIAEELKQACVSNGGSAPIPK 131 (178)
T ss_pred ccccCCCCceeEEe-cccCCHhHhhcCCCHHHHHHHHHHHHHhCCCCccCCH
Confidence 34444566666443 554 4488999999999999998876665443
No 130
>PRK10976 putative hydrolase; Provisional
Probab=26.69 E-value=2.4e+02 Score=20.10 Aligned_cols=57 Identities=7% Similarity=-0.028 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhcccceEEeeC-CCCcEEEEcCChHHHHHHHHhhhcCCCcCceEEccc
Q psy8931 33 LKEFCKLCQHGVAASTCINMV-NNAAQVQVQGNQIVFVHNLLTEKFNIQKRFIRGLEL 89 (95)
Q Consensus 33 l~~lak~lkk~~acs~sv~~~-~g~~eI~iQGd~~~~v~~~L~~~~gip~~~I~~~~~ 89 (95)
+..+...|...|.-..++... +..-||.-.|-..-.-.++|.+.+|++.+.+....+
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~lgi~~~~viafGD 214 (266)
T PRK10976 157 LLPLEQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGD 214 (266)
T ss_pred HHHHHHHHHHHhCCcEEEEEeCCceEEEEcCCCChHHHHHHHHHHcCCCHHHeEEEcC
Confidence 445666677666543333322 223688888877777777777779999887766543
No 131
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=25.87 E-value=1.2e+02 Score=24.52 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=38.3
Q ss_pred CeeEEEEecccCCCCCHHHHHHHHhhh-------cccceEEeeC---CCC-cEEEEcCChHHHHHHHHhhhcCCCc
Q psy8931 17 NKKVTLVNNLDVYGIDLKEFCKLCQHG-------VAASTCINMV---NNA-AQVQVQGNQIVFVHNLLTEKFNIQK 81 (95)
Q Consensus 17 ~K~vT~V~Gle~f~idl~~lak~lkk~-------~acs~sv~~~---~g~-~eI~iQGd~~~~v~~~L~~~~gip~ 81 (95)
+..|-+|-++.. .-|+.++...|... +.+++|+.+. +.+ .-|.+.......++++|.++||+|-
T Consensus 207 ~~~VNiiG~~~~-~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP~ 281 (466)
T TIGR01282 207 PYDVAIIGDYNI-GGDAWESRILLEEIGLRVVAQWSGDGTLNEMENAPKAKLNLIHCYRSMNYISRHMEEKYGIPW 281 (466)
T ss_pred CCeEEEEecCCC-cccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCce
Confidence 467888865543 45777766666542 2222333321 222 4555544555678999999999995
No 132
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=25.76 E-value=51 Score=23.33 Aligned_cols=45 Identities=7% Similarity=0.144 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcccc----eEEeeCCCC---------cEEEEcCChHHHHHHHHhhhcC
Q psy8931 34 KEFCKLCQHGVAAS----TCINMVNNA---------AQVQVQGNQIVFVHNLLTEKFN 78 (95)
Q Consensus 34 ~~lak~lkk~~acs----~sv~~~~g~---------~eI~iQGd~~~~v~~~L~~~~g 78 (95)
+.=|..|.+.+-|= -|+.++... -+.+-||+-..+|.+|+++.||
T Consensus 35 e~ra~~Lt~~LRCp~CQNqsIadSnA~IA~DlR~~V~e~l~eGkS~~qIid~mVaRYG 92 (153)
T COG3088 35 EQRARALTEELRCPQCQNQSIADSNAPIARDLRHQVYELLQEGKSDQQIIDYMVARYG 92 (153)
T ss_pred HHHHHHHHHhcCCCcCCCCChhhhccHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhhc
Confidence 34455555555554 355554332 4667899999999999999998
No 133
>TIGR02515 IV_pilus_PilQ type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure.
Probab=25.10 E-value=2.9e+02 Score=21.80 Aligned_cols=60 Identities=8% Similarity=0.160 Sum_probs=0.0
Q ss_pred ccCCCCCHHHHHHHHhhh-------cccceEEeeCCCCcEEEEcCC--hHHHHHHHHhhhcCCCcCceEE
Q psy8931 26 LDVYGIDLKEFCKLCQHG-------VAASTCINMVNNAAQVQVQGN--QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 26 le~f~idl~~lak~lkk~-------~acs~sv~~~~g~~eI~iQGd--~~~~v~~~L~~~~gip~~~I~~ 86 (95)
+...-.+.+++++.|+.. .+-.+.+.-.+....|.|.|. ..+.+.++|.+ +..|.+.|.+
T Consensus 102 f~l~y~~a~~v~~~l~~~~~~~~~~l~~~~~v~~d~~~n~lvv~~~~~~~~~i~~~i~~-lD~~~~QV~I 170 (418)
T TIGR02515 102 IQLNYAKASDIAKVLTGDDGGKGSLLSPRGSVTVDPRTNTLIVTDIPENLARIRKLIAE-LDIPVKQVLI 170 (418)
T ss_pred EEEeCCcHHHHHHHHhhcccccccccCCCeeEEEECCcCeEEEEeCHHHHHHHHHHHHH-hCCCccEEEE
No 134
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=24.94 E-value=54 Score=18.16 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHhhhccc
Q psy8931 30 GIDLKEFCKLCQHGVAA 46 (95)
Q Consensus 30 ~idl~~lak~lkk~~ac 46 (95)
.-||+++-+.|+++++.
T Consensus 20 PPDLdel~r~l~~kl~~ 36 (42)
T PF12221_consen 20 PPDLDELFRKLQDKLGG 36 (42)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 46999999999988764
No 135
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=24.84 E-value=61 Score=24.07 Aligned_cols=35 Identities=14% Similarity=0.036 Sum_probs=25.1
Q ss_pred cEEEEcCChHHHHHHHHhhhcCCCcCceEEccccC
Q psy8931 57 AQVQVQGNQIVFVHNLLTEKFNIQKRFIRGLELAP 91 (95)
Q Consensus 57 ~eI~iQGd~~~~v~~~L~~~~gip~~~I~~~~~~~ 91 (95)
+.+...|-+.-.+...|.+..|..++.|.++|+.+
T Consensus 154 GIlft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~ 188 (252)
T PF11019_consen 154 GILFTGGQDKGEVLKYFLDKINQSPKKIIFIDDNK 188 (252)
T ss_pred CeEEeCCCccHHHHHHHHHHcCCCCCeEEEEeCCH
Confidence 77777777766777766666887777777777653
No 136
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=24.80 E-value=87 Score=25.87 Aligned_cols=42 Identities=21% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCc
Q psy8931 34 KEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQK 81 (95)
Q Consensus 34 ~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~ 81 (95)
.+=+..|..-+++||-|.+ +++.+ |+.+.|++-|..++|+.+
T Consensus 222 ~ED~shLmtYhSASCVvvd----e~vtv--D~GKaVAEglL~qfGFe~ 263 (536)
T COG2024 222 REDASHLMTYHSASCVVVD----EDVTV--DDGKAVAEGLLRQFGFEK 263 (536)
T ss_pred hcchhhhhhhccceEEEEc----Ccccc--cccHHHHHHHHHHhCccc
Confidence 4557788889999999998 66666 788899999999899864
No 137
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=24.71 E-value=2.5e+02 Score=19.71 Aligned_cols=44 Identities=18% Similarity=0.024 Sum_probs=28.5
Q ss_pred EEEeeecCCeeEEEEecc-cCC---CCCHHHHHHHHhhhcccceEEeeC
Q psy8931 9 LQVATRSGNKKVTLVNNL-DVY---GIDLKEFCKLCQHGVAASTCINMV 53 (95)
Q Consensus 9 I~~~~R~g~K~vT~V~Gl-e~f---~idl~~lak~lkk~~acs~sv~~~ 53 (95)
..+.-|+| +.|..+.|- +.+ ..|+.++|+.|...-+-.-.+.+.
T Consensus 5 p~iD~~~g-~~v~~~~G~~~~~~~~~~~~~~~a~~~~~~g~~~i~v~dl 52 (233)
T PRK00748 5 PAIDLKDG-KCVRLYQGDYDQATVYSDDPVAQAKAWEDQGAKWLHLVDL 52 (233)
T ss_pred EEEEEECC-eEEEccccccccceEecCCHHHHHHHHHHcCCCEEEEEeC
Confidence 34444544 788777773 333 679999999999843333455554
No 138
>PF08601 PAP1: Transcription factor PAP1; InterPro: IPR013910 The transcription factor Pap1 regulates antioxidant-gene transcription in response to H2O2 []. This region is cysteine rich. Alkylation of cysteine residues following treatment with a cysteine alkylating agent can mask the accessibility of the nuclear exporter Crm1, triggering nuclear accumulation and Pap1 dependent transcriptional expression []. ; PDB: 1SSE_B.
Probab=24.48 E-value=36 Score=26.86 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=14.1
Q ss_pred ccCC-CCCHHHHHHHHhhhcccce
Q psy8931 26 LDVY-GIDLKEFCKLCQHGVAAST 48 (95)
Q Consensus 26 le~f-~idl~~lak~lkk~~acs~ 48 (95)
.+.| .+|++.|+.+|+++.-|++
T Consensus 307 ~p~~~~~did~lc~el~~kakcs~ 330 (347)
T PF08601_consen 307 HPKFGEIDIDGLCSELKKKAKCSE 330 (347)
T ss_dssp -S--SS--HHHHHHHHTTT--EET
T ss_pred CCcccccchHHHHHHHHHhCccCC
Confidence 3445 5799999999999999985
No 139
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=24.21 E-value=85 Score=17.85 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=14.4
Q ss_pred HHHHHHHhhhcCCCcCceEE
Q psy8931 67 VFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 67 ~~v~~~L~~~~gip~~~I~~ 86 (95)
..|.+.|.+.+|+|++.+.+
T Consensus 22 ~~it~~l~~~lg~p~~~v~V 41 (64)
T PRK01964 22 REVTEAISATLDVPKERVRV 41 (64)
T ss_pred HHHHHHHHHHhCcChhhEEE
Confidence 34555566678999998886
No 140
>KOG4233|consensus
Probab=24.16 E-value=32 Score=22.06 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=15.9
Q ss_pred ecCCeeEEEEecc-cCCCCCHH
Q psy8931 14 RSGNKKVTLVNNL-DVYGIDLK 34 (95)
Q Consensus 14 R~g~K~vT~V~Gl-e~f~idl~ 34 (95)
-.|.|.||-+.|+ +.+++.|.
T Consensus 15 PmGeK~V~~laGIg~~lg~~L~ 36 (90)
T KOG4233|consen 15 PMGEKDVTWLAGIGETLGIKLV 36 (90)
T ss_pred ccCCCcceeeccccHHhhhhHH
Confidence 3589999999998 56666553
No 141
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair]
Probab=23.88 E-value=1.1e+02 Score=23.88 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=16.9
Q ss_pred cEEEEcCChHHHHHHHHhh
Q psy8931 57 AQVQVQGNQIVFVHNLLTE 75 (95)
Q Consensus 57 ~eI~iQGd~~~~v~~~L~~ 75 (95)
+-+++||+..+.+.+++..
T Consensus 49 gk~~~QG~~ae~~~~~~l~ 67 (297)
T COG1039 49 GKVVIQGKGAEAFAKEFLN 67 (297)
T ss_pred ceEEEecCCHHHHHHHHhh
Confidence 7899999999999987765
No 142
>CHL00127 rpl11 ribosomal protein L11; Validated
Probab=23.16 E-value=85 Score=21.64 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=34.7
Q ss_pred ccCCCCCHHHHHHHHhhhccc-ceEEeeCCCCcEEEEcCChHH-------HHHHHHhhhcCCCcC
Q psy8931 26 LDVYGIDLKEFCKLCQHGVAA-STCINMVNNAAQVQVQGNQIV-------FVHNLLTEKFNIQKR 82 (95)
Q Consensus 26 le~f~idl~~lak~lkk~~ac-s~sv~~~~g~~eI~iQGd~~~-------~v~~~L~~~~gip~~ 82 (95)
|-.+|+++.+|+++|-.+-+- .+...+ .+|.++-|..- ....||.+..|+++.
T Consensus 28 LG~~Gini~~f~k~fN~~T~~~~g~~vp----V~Itv~~drsf~~~v~~Pp~s~ll~ka~gi~~g 88 (140)
T CHL00127 28 LGQHGVNINLFCKEYNARTKDKIGLIIP----VEISVYEDKSYTFILKTPPASVLLAKAAGIKKG 88 (140)
T ss_pred ccccCCCHHHHHHHHHHHhhhcCCCeEE----EEEEEeCCceEEEEEcCCCHHHHHHHHhCCCcC
Confidence 667899999999999876653 122222 67777776433 235666666777754
No 143
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=23.10 E-value=1.1e+02 Score=16.67 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhcCCCcCceEE
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~ 86 (95)
.+.+.+.|.+.+|+|++.+.+
T Consensus 20 ~~~i~~~l~~~~g~~~~~v~V 40 (58)
T cd00491 20 IERVTEAVSEILGAPEATIVV 40 (58)
T ss_pred HHHHHHHHHHHhCcCcccEEE
Confidence 345566666778999888876
No 144
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=22.99 E-value=2.8e+02 Score=19.73 Aligned_cols=56 Identities=9% Similarity=-0.056 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhcccceEEeeCC-CCcEEEEcCChHHHHHHHHhhhcCCCcCceEEcc
Q psy8931 33 LKEFCKLCQHGVAASTCINMVN-NAAQVQVQGNQIVFVHNLLTEKFNIQKRFIRGLE 88 (95)
Q Consensus 33 l~~lak~lkk~~acs~sv~~~~-g~~eI~iQGd~~~~v~~~L~~~~gip~~~I~~~~ 88 (95)
+.++...|...+.-..++.... ..-||.-.|-..-.-.++|.+.+|++.+.+....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~~gi~~~~v~afG 219 (270)
T PRK10513 163 LDAAIARIPAEVKERYTVLKSAPYFLEILDKRVNKGTGVKSLAEHLGIKPEEVMAIG 219 (270)
T ss_pred HHHHHHHhHHHhcCcEEEEEecCeeEEEeCCCCChHHHHHHHHHHhCCCHHHEEEEC
Confidence 3455566666554333333322 2267888887777777788887999987776554
No 145
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=22.90 E-value=1.5e+02 Score=16.36 Aligned_cols=36 Identities=14% Similarity=0.016 Sum_probs=24.9
Q ss_pred HHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHH
Q psy8931 36 FCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNL 72 (95)
Q Consensus 36 lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~ 72 (95)
-.++++..++|.-.+.+.++...|.|.| ..+.|.+.
T Consensus 21 ~i~~I~~~t~~~I~i~~~~~~~~v~I~G-~~~~v~~A 56 (60)
T PF00013_consen 21 NIKEIEEETGVKIQIPDDDERDIVTISG-SPEQVEKA 56 (60)
T ss_dssp HHHHHHHHHTSEEEEESTTEEEEEEEEE-SHHHHHHH
T ss_pred cHHHhhhhcCeEEEEcCCCCcEEEEEEe-CHHHHHHH
Confidence 4577888899998887543226899999 55555443
No 146
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=22.66 E-value=94 Score=18.73 Aligned_cols=27 Identities=15% Similarity=0.446 Sum_probs=19.1
Q ss_pred EEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcc
Q psy8931 9 LQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVA 45 (95)
Q Consensus 9 I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~a 45 (95)
|.+.+|.|+ .+.| |+..+.+.+.+.|.
T Consensus 1 i~ViKrdG~--------~e~F--~~~KI~~~i~~a~~ 27 (90)
T PF03477_consen 1 IKVIKRDGR--------VEPF--DREKIVRAIEKACE 27 (90)
T ss_dssp -EEEESSSS--------EEES---HHHHHHHHHTTCT
T ss_pred CEEEeCCCc--------Eeee--cHHHHHHHHHHHHH
Confidence 456777773 4555 99999999999883
No 147
>TIGR02517 type_II_gspD general secretion pathway protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See PubMed:12654803). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516).
Probab=22.64 E-value=3.8e+02 Score=22.05 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=41.6
Q ss_pred cCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChH--HHHHHHHhhhcCCCc
Q psy8931 27 DVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQI--VFVHNLLTEKFNIQK 81 (95)
Q Consensus 27 e~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~--~~v~~~L~~~~gip~ 81 (95)
....++.+++++.|+..++-.+.+...+....+.|.|.-. +++.++|.. +..|.
T Consensus 103 ~L~~~~a~~v~~~L~~lls~~~~v~~d~~~N~liv~~~~~~l~~i~~li~~-lD~p~ 158 (594)
T TIGR02517 103 PLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQ-LDVDG 158 (594)
T ss_pred EeccCCHHHHHHHHHHhcCCCceEEEcCCCCEEEEEcCHHHHHHHHHHHHH-hcccC
Confidence 3446799999999999888888888777768899998744 467777766 66665
No 148
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=22.46 E-value=1.7e+02 Score=22.51 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=40.3
Q ss_pred CCeeEEEEecccCCCCCHHHHHHHHhhhccc--------ceEEeeC---CCC-cEEEEcCChHHHHHHHHhhhcCCCcC
Q psy8931 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHGVAA--------STCINMV---NNA-AQVQVQGNQIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 16 g~K~vT~V~Gle~f~idl~~lak~lkk~~ac--------s~sv~~~---~g~-~eI~iQGd~~~~v~~~L~~~~gip~~ 82 (95)
.++.|.++-+.....-|..++.+.|+ .++. ++|+.+. +.. .-|.+........+++|.++||+|--
T Consensus 143 ~~~~VNiiG~~~~~~~d~~el~~lL~-~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~~a~~L~e~~giP~~ 220 (398)
T PF00148_consen 143 KPRSVNIIGGSPLGPGDLEELKRLLE-ELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGPYAAEWLEERFGIPYL 220 (398)
T ss_dssp SSSEEEEEEESTBTHHHHHHHHHHHH-HTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHHHHHHHHHHHHT-EEE
T ss_pred CCCceEEecCcCCCcccHHHHHHHHH-HCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhhHHHHHHHHHhCCCee
Confidence 45688888655321157777777763 3333 3333321 222 56777777676799999999999853
No 149
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=22.43 E-value=1.2e+02 Score=19.93 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=15.5
Q ss_pred ChHHHHHHHHhhhcCCCcCceEEcccc
Q psy8931 64 NQIVFVHNLLTEKFNIQKRFIRGLELA 90 (95)
Q Consensus 64 d~~~~v~~~L~~~~gip~~~I~~~~~~ 90 (95)
...+...++|.+ .|||...|...+..
T Consensus 54 ~ea~~~~~~l~~-~gvp~~~I~~e~~s 79 (155)
T PF02698_consen 54 SEAEAMRDYLIE-LGVPEERIILEPKS 79 (155)
T ss_dssp -HHHHHHHHHHH-T---GGGEEEE---
T ss_pred CHHHHHHHHHHh-cccchheeEccCCC
Confidence 466778889999 59999988776543
No 150
>cd00349 Ribosomal_L11 Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal protein L12, which is distinct from the L12 involved in the formation of the L7/L12 stalk. The C-terminal domain (CTD) of L11 is essential for binding 23S rRNA, while the N-terminal domain (NTD) contains the binding site for the antibiotics thiostrepton and micrococcin. L11 and 23S rRNA form an essential part of the GTPase-associated region (GAR). Based on differences in the relative positions of the L11 NTD and CTD during the translational cycle, L11 is proposed to play a significant role in the binding of initiation factors, elongation factors, and release factors to the ribosome. Several factors, including the class I release factors RF1 and RF2, are known to interact directly with L11. In eukaryotes, L11 has been im
Probab=22.05 E-value=2.2e+02 Score=19.27 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=32.5
Q ss_pred ccCCCCCHHHHHHHHhhhccc-ceEEeeCCCCcEEEEcCC-------hHHHHHHHHhhhcCCCc
Q psy8931 26 LDVYGIDLKEFCKLCQHGVAA-STCINMVNNAAQVQVQGN-------QIVFVHNLLTEKFNIQK 81 (95)
Q Consensus 26 le~f~idl~~lak~lkk~~ac-s~sv~~~~g~~eI~iQGd-------~~~~v~~~L~~~~gip~ 81 (95)
|-.+|+++.+|+++|-.+-+- .+...+ .+|.++-| .......||.+..|+++
T Consensus 20 LG~~Gin~~~f~k~fN~~T~~~~g~~vp----V~itv~~dksf~~~v~~Pp~s~ll~ka~g~~k 79 (131)
T cd00349 20 LGQLGVNIMKFCKEFNARTKDYKGLPVP----VKITVYNDRSFTFEVKTPPASALLKKAAGIEK 79 (131)
T ss_pred cccCCCCHHHHHHHHHHHHhhcCCCeEE----EEEEEeCCCeEEEEEcCCCHHHHHHHHhCCCC
Confidence 667899999999999877652 111111 56666666 12345566666566654
No 151
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=21.65 E-value=71 Score=21.32 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=21.0
Q ss_pred cEEEEcCChHH-HHHHHHhhhcCCCcCceEE
Q psy8931 57 AQVQVQGNQIV-FVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 57 ~eI~iQGd~~~-~v~~~L~~~~gip~~~I~~ 86 (95)
+-|=||=|..+ -|++-|++ .|||++.|..
T Consensus 66 gKIWIq~d~TE~gIa~eLve-~GVpk~dIVL 95 (111)
T PF08869_consen 66 GKIWIQRDGTEDGIAEELVE-AGVPKEDIVL 95 (111)
T ss_dssp TEEEEEEESSSSHHHHHHHH-TT--GGGEEE
T ss_pred CeEEEEcCchhhHHHHHHHH-cCCCHHHEEE
Confidence 57778877554 57778888 9999999975
No 152
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=21.64 E-value=2.6e+02 Score=21.53 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=37.7
Q ss_pred ecCCeeEEEEeccc--CCCCCHHHHHHHHhhhcc-cceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCc
Q psy8931 14 RSGNKKVTLVNNLD--VYGIDLKEFCKLCQHGVA-ASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQK 81 (95)
Q Consensus 14 R~g~K~vT~V~Gle--~f~idl~~lak~lkk~~a-cs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~ 81 (95)
|+|.+..-+|.+|+ .|..++++..+.-.+..- +|+.....+| |.+.-+..+.|.+ .|||.
T Consensus 71 ~Rga~~~~vv~DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEG-------G~~~~~~i~~L~~-~gIPV 133 (268)
T COG0413 71 RRGAPNAFVVADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEG-------GEEMAETIKRLTE-RGIPV 133 (268)
T ss_pred HhcCCCeeEEeCCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcC-------CHHHHHHHHHHHH-cCCce
Confidence 55888888999986 355666665444444444 5554444333 3566777778887 77773
No 153
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=21.61 E-value=1.2e+02 Score=24.52 Aligned_cols=64 Identities=13% Similarity=0.206 Sum_probs=39.9
Q ss_pred CeeEEEEecccCCCCCHHHHHHHHhhh-------cccceEEeeC---CCC-cEEEEcCChHHHHHHHHhhhcCCCc
Q psy8931 17 NKKVTLVNNLDVYGIDLKEFCKLCQHG-------VAASTCINMV---NNA-AQVQVQGNQIVFVHNLLTEKFNIQK 81 (95)
Q Consensus 17 ~K~vT~V~Gle~f~idl~~lak~lkk~-------~acs~sv~~~---~g~-~eI~iQGd~~~~v~~~L~~~~gip~ 81 (95)
...|.+|-++.. .-|+.++.+.|... |..++|+.+. +.+ .-|.+.+.....++++|.++||+|-
T Consensus 191 ~~~VNiiG~~~~-~gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~A~~L~erfGiP~ 265 (475)
T PRK14478 191 PYDINILGEYNL-AGELWQVKPLLDRLGIRVVACITGDARYDDVASAHRARANMMVCSGAMINLARKMEERYGIPF 265 (475)
T ss_pred CCeEEEEeCCCC-CCCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhcccCcEEEEEcHHHHHHHHHHHHHHhCCCE
Confidence 467888876543 34776665555442 1112233321 222 4566777778889999999999996
No 154
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=21.46 E-value=1.3e+02 Score=23.68 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=39.9
Q ss_pred CCeeEEEEeccc-CC--CCCHHHHHHHHhhh-------cccceEEeeC---CCC-cEEEEcCChHHHHHHHHhhhcCCCc
Q psy8931 16 GNKKVTLVNNLD-VY--GIDLKEFCKLCQHG-------VAASTCINMV---NNA-AQVQVQGNQIVFVHNLLTEKFNIQK 81 (95)
Q Consensus 16 g~K~vT~V~Gle-~f--~idl~~lak~lkk~-------~acs~sv~~~---~g~-~eI~iQGd~~~~v~~~L~~~~gip~ 81 (95)
.+..|-++-... .| .-|++++...|... |.+++++.+. +.. .-|.+-.+....++++|.++||+|-
T Consensus 161 ~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP~ 240 (430)
T cd01981 161 EKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDLNELPKAWFNIVPYREYGLSAALYLEEEFGMPS 240 (430)
T ss_pred CCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHHHhhhhCeEEEEecHHHHHHHHHHHHHHhCCCe
Confidence 456788885432 22 35788888777752 2222233221 222 3444445677889999999999995
No 155
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=21.31 E-value=3.7e+02 Score=20.32 Aligned_cols=41 Identities=27% Similarity=0.160 Sum_probs=30.9
Q ss_pred CCeeEEEEecc-c---CCCCCHHHHHHHHhhhcccceEEeeCCCC
Q psy8931 16 GNKKVTLVNNL-D---VYGIDLKEFCKLCQHGVAASTCINMVNNA 56 (95)
Q Consensus 16 g~K~vT~V~Gl-e---~f~idl~~lak~lkk~~acs~sv~~~~g~ 56 (95)
..|.|-+++|- + .|.-||-+.|+.|....|-==-+.+..|.
T Consensus 12 ~G~~VRL~qGd~~~~~~y~~~P~~~a~~~~~~Ga~~lHlVDLdgA 56 (241)
T COG0106 12 DGKVVRLVQGDYGKETVYSDDPLEVAKKWSDQGAEWLHLVDLDGA 56 (241)
T ss_pred CCEEEEeecccCCcceEecCCHHHHHHHHHHcCCcEEEEeecccc
Confidence 45999999994 2 35679999999999977766666665543
No 156
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.07 E-value=84 Score=21.11 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=14.6
Q ss_pred hHHHHHHHHhhhcCCCc
Q psy8931 65 QIVFVHNLLTEKFNIQK 81 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~ 81 (95)
-.+.|.++|.+.||+|.
T Consensus 95 d~~~I~~~La~r~g~p~ 111 (112)
T PF11287_consen 95 DPRRILRYLAERHGFPR 111 (112)
T ss_pred CHHHHHHHHHHHcCCCC
Confidence 35789999999999985
No 157
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=21.04 E-value=39 Score=18.13 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=13.6
Q ss_pred ccCCCCCHHHHHHHHhhh
Q psy8931 26 LDVYGIDLKEFCKLCQHG 43 (95)
Q Consensus 26 le~f~idl~~lak~lkk~ 43 (95)
|+.+++|++.+.+++.+.
T Consensus 34 l~~~~id~~~l~~~i~~~ 51 (53)
T PF02861_consen 34 LKKLGIDPEQLKAAIEKA 51 (53)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHH
Confidence 456788888888887764
No 158
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=20.93 E-value=1.4e+02 Score=17.01 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=14.8
Q ss_pred EcCChHHHHH-HHHhhhcCCCcCceEE--cccc
Q psy8931 61 VQGNQIVFVH-NLLTEKFNIQKRFIRG--LELA 90 (95)
Q Consensus 61 iQGd~~~~v~-~~L~~~~gip~~~I~~--~~~~ 90 (95)
++|.-.++.. +.+.+ +|+|++.+++ ++..
T Consensus 2 ~~gkt~eeAi~~A~~~-l~~~~~~~~~eVi~~g 33 (52)
T PF14804_consen 2 FEGKTVEEAIEKALKE-LGVPREELEYEVIEEG 33 (52)
T ss_dssp EEESSHHHHHHHHHHH-TT--GGGEEEEEEE--
T ss_pred eeECCHHHHHHHHHHH-hCCChHHEEEEEEEcC
Confidence 3454444444 44555 9999998886 4543
No 159
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=20.61 E-value=2.5e+02 Score=20.27 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHH
Q psy8931 30 GIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNL 72 (95)
Q Consensus 30 ~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~ 72 (95)
+.+..+|.+.+++.....=...+..+. ..|.|||+.. .+.+.
T Consensus 8 ~~E~~~fle~l~~~~~~~~~~v~~k~n~l~I~i~G~~~-eike~ 50 (190)
T PF09840_consen 8 DEECEEFLERLSKMVKSIYIYVEVKGNSLKIEIQGYEK-EIKEA 50 (190)
T ss_pred hHHHHHHHHHHHhhccCcEEEEEEeCCEEEEEEecChH-HHHHH
Confidence 346788999998885444332333333 8999999987 44443
No 160
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=20.55 E-value=98 Score=20.01 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=27.3
Q ss_pred CHHHHHHHHhhhcccceEEeeCCCCcEEEEc--CChHHHHHHHHhhhcCCCcCceEEc
Q psy8931 32 DLKEFCKLCQHGVAASTCINMVNNAAQVQVQ--GNQIVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 32 dl~~lak~lkk~~acs~sv~~~~g~~eI~iQ--Gd~~~~v~~~L~~~~gip~~~I~~~ 87 (95)
....|+..++....- ++...+=+- ......+..+|.+++|+|++.|.+.
T Consensus 63 ~~~~l~~al~~~~~~-------~~~~~vW~AgE~~~~r~lR~~l~~~~g~~~~~~~~~ 113 (119)
T PF04954_consen 63 QGSALADALRDLPLP-------AGDGYVWVAGEASAVRALRRHLREERGLPRDRIYAS 113 (119)
T ss_dssp T-HHHHHHHTTS----------SS-EEEEEEEEHHHHHHHHHHHHHH----GGGEEEE
T ss_pred hHHHHHHHHHHhhcc-------CCCeEEEEEecHHHHHHHHHHHHHhhCCCHHHeEEE
Confidence 456677777665541 111334444 4578899999998899999998764
No 161
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=20.43 E-value=2.5e+02 Score=18.13 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=23.5
Q ss_pred EEEEecccCCCCCHHHHHHHHhhhc-ccceEEeeCCCC
Q psy8931 20 VTLVNNLDVYGIDLKEFCKLCQHGV-AASTCINMVNNA 56 (95)
Q Consensus 20 vT~V~Gle~f~idl~~lak~lkk~~-acs~sv~~~~g~ 56 (95)
+-.|.||.. ..|+..+...|+..+ .|||-|....+.
T Consensus 4 ~L~V~NLP~-~~d~~~I~~RL~qLsdNCGGkVl~v~~~ 40 (90)
T PF11608_consen 4 LLYVSNLPT-NKDPSSIKNRLRQLSDNCGGKVLSVSGG 40 (90)
T ss_dssp EEEEES--T-TS-HHHHHHHHHHHHHTTT--EEE--TT
T ss_pred EEEEecCCC-CCCHHHHHHHHHHHhhccCCEEEEEeCC
Confidence 457899997 679999999999887 699988876554
No 162
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=20.09 E-value=4.7e+02 Score=21.04 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=38.8
Q ss_pred CCeeEEEEecccCCCCCHHHHHHHHhhhcccc--------eEEeeC---CCC-cEEEEcCChHHHHHHHHhhhcCCCcC
Q psy8931 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHGVAAS--------TCINMV---NNA-AQVQVQGNQIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 16 g~K~vT~V~Gle~f~idl~~lak~lkk~~acs--------~sv~~~---~g~-~eI~iQGd~~~~v~~~L~~~~gip~~ 82 (95)
.++.|.+|-++. ..-|+.++...|.. |+.- +|+.+. +.+ .-|.+.+.....++++|.++||+|--
T Consensus 198 ~~~~VNiiG~~~-~~gd~~el~~lL~~-~Gl~v~~~~~g~~s~~ei~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~ 274 (457)
T TIGR01284 198 TEYDVNLIGEYN-IQGDLWVLKKYFER-MGIQVLSTFTGNGCYDELRWMHRAKLNVVRCARSANYIANELEERYGIPRL 274 (457)
T ss_pred CCCeEEEEccCC-chhhHHHHHHHHHH-cCCeEEEEECCCCCHHHHHhccccCEEEEEChHHHHHHHHHHHHHhCCCeE
Confidence 356788884333 23466666655543 3222 222221 112 45666667788899999999999943
No 163
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=20.01 E-value=1.3e+02 Score=17.41 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=13.6
Q ss_pred HHHHHHhhhcCCCcCceEE
Q psy8931 68 FVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 68 ~v~~~L~~~~gip~~~I~~ 86 (95)
.+.++|.+ +++|.+.|-+
T Consensus 17 tl~~ll~~-l~~~~~~vav 34 (65)
T PRK05863 17 TVAALLDS-LGFPEKGIAV 34 (65)
T ss_pred cHHHHHHH-cCCCCCcEEE
Confidence 37777777 8888887766
Done!